Citrus Sinensis ID: 011535
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 483 | 2.2.26 [Sep-21-2011] | |||||||
| P82861 | 498 | NADPH:adrenodoxin oxidore | N/A | no | 0.939 | 0.911 | 0.484 | 1e-119 | |
| Q61578 | 494 | NADPH:adrenodoxin oxidore | yes | no | 0.937 | 0.917 | 0.459 | 1e-107 | |
| P22570 | 491 | NADPH:adrenodoxin oxidore | yes | no | 0.933 | 0.918 | 0.472 | 1e-106 | |
| P08165 | 492 | NADPH:adrenodoxin oxidore | yes | no | 0.937 | 0.920 | 0.453 | 1e-105 | |
| P56522 | 494 | NADPH:adrenodoxin oxidore | yes | no | 0.935 | 0.914 | 0.452 | 1e-105 | |
| Q9V3T9 | 466 | NADPH:adrenodoxin oxidore | yes | no | 0.896 | 0.929 | 0.427 | 7e-96 | |
| O05783 | 456 | NADPH-ferredoxin reductas | yes | no | 0.917 | 0.971 | 0.392 | 4e-83 | |
| O32886 | 456 | NADPH-ferredoxin reductas | yes | no | 0.910 | 0.964 | 0.387 | 1e-78 | |
| P65528 | 575 | Probable ferredoxin/ferre | no | no | 0.892 | 0.749 | 0.381 | 2e-76 | |
| P65529 | 575 | Probable ferredoxin/ferre | no | no | 0.892 | 0.749 | 0.381 | 2e-76 |
| >sp|P82861|ADRO_SALFO NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Salvelinus fontinalis GN=fdxr PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/479 (48%), Positives = 312/479 (65%), Gaps = 25/479 (5%)
Query: 11 SFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE 70
S + +S+P +VC+VG GPAGFYTA+ +K + QVDI +RLP PFGLVR GVAPDHPE
Sbjct: 36 STSTPASSP-KVCIVGGGPAGFYTAQHLVKTRTDVQVDIYERLPVPFGLVRFGVAPDHPE 94
Query: 71 TKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL 130
K VIN F++ +H RCSF GNV +G V++ EL++ YH VVL+YGAE +R +G+PGEDL
Sbjct: 95 VKNVINTFTQTARHARCSFHGNVRVGKDVTVEELQEAYHAVVLSYGAEGNRTMGVPGEDL 154
Query: 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190
GV+SA++FV WYNG P + L PDL S +TAVILGQGNVALDVAR+LL P + L TDI
Sbjct: 155 AGVYSAKDFVGWYNGLPRNRELRPDL-SCETAVILGQGNVALDVARMLLSPVDILKKTDI 213
Query: 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250
+A AL SS+R+V +VGRRGP+Q ACT KELRE++ + + + E
Sbjct: 214 TQHALDALAESSVRRVLIVGRRGPLQVACTIKELREMVNLPGTRPEMEASEF---EGIAE 270
Query: 251 EMKN-SRIQRRVYELLSKAAASASSQPML-----GQRELHFVFFRKPDSFLESNERSGHV 304
+K+ +R ++R+ ELL KAA + L +R F F R+P L S +
Sbjct: 271 TLKSLARPRKRLTELLLKAAIETPGEEELEKRNKAERAWGFRFLRRPLEVLPSTDLI-RA 329
Query: 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPN 363
+G+ L+G G G + AV TGE ED++CG+V+ SIGYKS+P++ +PFD K I+PN
Sbjct: 330 AGIRLAVNRLEGDGEGVR-AVATGEVEDVECGLVISSIGYKSLPIDPAVPFDGRKAIIPN 388
Query: 364 IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASS 423
GRV Q GLY GW+KRGPTG+IAT + + +T ++ +D+ +G L S
Sbjct: 389 TMGRV---------QQTAGLYCSGWVKRGPTGVIATTMNDSFDTARTLLQDIGKGTLDVS 439
Query: 424 SGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482
S KPG +G+ LL+ R V+PV FS WEKIDSEE R G R KP+EK+ ++L+VA
Sbjct: 440 S--VKPGSQGVSALLEKRGVKPVSFSDWEKIDSEETRRGETRGKPREKMLDVGEMLQVA 496
|
Salvelinus fontinalis (taxid: 8038) EC: 1EC: .EC: 1EC: 8EC: .EC: 1EC: .EC: 2 |
| >sp|Q61578|ADRO_MOUSE NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Mus musculus GN=Fdxr PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/483 (45%), Positives = 296/483 (61%), Gaps = 30/483 (6%)
Query: 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
+ F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPD
Sbjct: 30 FCQKFSTQEKTP-QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPD 88
Query: 68 HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
HPE K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + LGIPG
Sbjct: 89 HPEVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPG 148
Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L
Sbjct: 149 EELPGVVSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEK 207
Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
TDI A AL S ++ V++VGRRGP+Q A T KELRE++ + + D +
Sbjct: 208 TDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGL-- 265
Query: 248 DEEEMKNSRIQRRVYELLSKAAASASSQP--------MLGQRELHFVFFRKPDSFLESNE 299
++ +K+ + R L +A+ +P L R FFR P L + +
Sbjct: 266 -QDRIKD--VPRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPD 322
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHK 358
V+G+ T+L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD
Sbjct: 323 -GQRVAGIRLAVTSLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKL 380
Query: 359 GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418
G++PN GRV+ N+ GLY GW+KRGPTG+I T + + T ++ EDL+ G
Sbjct: 381 GVIPNTEGRVV-NVP--------GLYCSGWVKRGPTGVITTTMTDSFLTSQALLEDLKAG 431
Query: 419 VLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDL 478
+L S P+PG + LL NR VRPV FS WEK+D+EE G KP+EKL ++
Sbjct: 432 LLPSG---PRPGYVAIQALLSNRGVRPVSFSDWEKLDAEEVSRGQGTGKPREKLVDRREM 488
Query: 479 LKV 481
L++
Sbjct: 489 LRL 491
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P22570|ADRO_HUMAN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/476 (47%), Positives = 294/476 (61%), Gaps = 25/476 (5%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE
Sbjct: 32 FSTQEKTP-QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L
Sbjct: 90 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI
Sbjct: 150 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 208
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
A L S ++ V+LVGRRGP+Q A T KELRE++ + + D + +E
Sbjct: 209 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKE 268
Query: 252 MKNSRIQRRVYELLSKAAA-----SASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
+ R +R+ ELL + A + +++ R FFR P L S + +G
Sbjct: 269 VPRPR--KRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAG 325
Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIR 365
V T L+G + AV TG+ EDL CG+VL SIGYKS PV+ +PFD+ G++PN+
Sbjct: 326 VRLAVTRLEGVDEATR-AVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVE 384
Query: 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSG 425
GRV+ GLY GW+KRGPTG+IAT + + T + +DL+ G+L S
Sbjct: 385 GRVMDV---------PGLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPSG-- 433
Query: 426 LPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
P+PG + LL +R VRPV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 434 -PRPGYAAIQALLSSRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDPQEMLRL 488
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P08165|ADRO_BOVIN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Bos taurus GN=FDXR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/483 (45%), Positives = 296/483 (61%), Gaps = 30/483 (6%)
Query: 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
+ F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPD
Sbjct: 28 FGQHFSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPD 86
Query: 68 HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
HPE K VIN F++ + +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPG
Sbjct: 87 HPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPG 146
Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L
Sbjct: 147 EELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEK 205
Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
TDI A AL S ++ V++VGRRGP+Q A T KELRE++ + + D +
Sbjct: 206 TDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--L 263
Query: 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDSFLESNE 299
+ + +R ++R+ ELL + +A+ +P + + FFR P L S +
Sbjct: 264 QDRIKEAARPRKRLMELLLR---TATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD 320
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHK 358
+G+ T L+G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD
Sbjct: 321 -GRRAAGIRLAVTRLEGIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKL 378
Query: 359 GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418
G+VPN+ GRV+ GLY GW+KRGPTG+I T + + T + +DL+ G
Sbjct: 379 GVVPNMEGRVVDV---------PGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAG 429
Query: 419 VLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDL 478
L S P+PG + LLD+R V PV FS WEK+D+EE G KP+EKL +++
Sbjct: 430 HLPSG---PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEM 486
Query: 479 LKV 481
L++
Sbjct: 487 LRL 489
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P56522|ADRO_RAT NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Fdxr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/484 (45%), Positives = 297/484 (61%), Gaps = 32/484 (6%)
Query: 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
+ F+ + P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPD
Sbjct: 30 FCKKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPD 88
Query: 68 HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
HPE K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + L IPG
Sbjct: 89 HPEVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPG 148
Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L
Sbjct: 149 EELPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEK 207
Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
TDI A L S ++ V++VGRRGP+Q A T KELRE++ + + D +
Sbjct: 208 TDITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL-- 265
Query: 248 DEEEMKN-SRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDSFLESN 298
++ +K+ R ++R+ ELL + +A+ +P + + FFR P L +
Sbjct: 266 -QDRIKDVPRPRKRLTELLLR---TATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTP 321
Query: 299 ERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNH 357
+ V+G+ T L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD
Sbjct: 322 D-GRRVAGIRLAVTRLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPK 379
Query: 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQ 417
GI+PN GRV+ GLY GW+KRGPTG+I T + + T + +DL+
Sbjct: 380 LGIIPNTEGRVVN---------APGLYCSGWVKRGPTGVITTTMTDSFLTSQVLLKDLKA 430
Query: 418 GVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYED 477
G+L S P+PG + LL +R VRPV FS WEK+D+EE G KP+EKL +
Sbjct: 431 GLLPSG---PRPGYTAIQALLSDRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDRRE 487
Query: 478 LLKV 481
+L++
Sbjct: 488 MLQL 491
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9V3T9|ADRO_DROME NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (901), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 198/463 (42%), Positives = 276/463 (59%), Gaps = 30/463 (6%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
R+C+VG+GPAGFY A+ LK VD++++LP PFGLVR GVAPDHPE K VIN F++
Sbjct: 31 RICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPVPFGLVRFGVAPDHPEVKNVINTFTK 90
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+H R +FGN++LG+ VSL ELR YH V+L YGA+ DR L + E L V SAR+FV
Sbjct: 91 TAEHPRLRYFGNISLGTDVSLRELRDRYHAVLLTYGADQDRQLELENEQLDNVISARKFV 150
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
WYNG P +NL+PDL D ++ GQGNVA+DVAR+LL P + L TTD YA AL
Sbjct: 151 AWYNGLPGAENLAPDLSGRDVTIV-GQGNVAVDVARMLLSPLDALKTTDTTEYALEALSC 209
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
S + +V+LVGRRGP+QAA T KELRE+L + N+ R +D S D + K R ++R
Sbjct: 210 SQVERVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRTEDF--SGIDMQLDKLQRPRKR 267
Query: 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320
+ EL+ K+ + G ++ +F R P + + F T L+
Sbjct: 268 LTELMLKSLKEQGR--ISGSKQFLPIFLRAPKAIAPGE--------MEFSVTELQ----- 312
Query: 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQV 379
++ AV T E L ++L+SIGYKS V+ G+ FD +G V NI GR+LK+ + + +V
Sbjct: 313 QEAAVPTSSTERLPSHLILRSIGYKSSCVDTGINFDTRRGRVHNINGRILKDDA--TGEV 370
Query: 380 ENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQLLD 439
+ GLYV GWL GPTG+I T + A +I +D+ L +SS KPG D
Sbjct: 371 DPGLYVAGWLGTGPTGVIVTTMNGAFAVAKTICDDINTNALDTSS--VKPG-------YD 421
Query: 440 NRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482
R V + W++I+ E G + KP+EK+ + E++L+VA
Sbjct: 422 ADGKRVVTWDGWQRINDFESAAGKAKGKPREKIVSIEEMLRVA 464
|
Required for synthesis of steroid hormones, for olfactory sensory behavior and completion of the second larval molt (a steroid mediated developmental transition) and pupariation. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O05783|FPRA_MYCTU NADPH-ferredoxin reductase FprA OS=Mycobacterium tuberculosis GN=fprA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (790), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 268/471 (56%), Gaps = 28/471 (5%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA + VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I +L TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L A +P G R + F F P + V + +
Sbjct: 241 VGKVCKQNIKVLR---GYADREPRPGHRRMVFRFLTSPIEIKGKRK----VERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373
L G G+ A TGE E+L +V++S+GY+ VP GLPFD+ G +PN+ GR I+
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGR----IN 349
Query: 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL---EQGVLASSSGLPKPG 430
G ++ YV GW+KRGPTG+I TN A++TV ++ ++L ++G A P+
Sbjct: 350 GSPNE-----YVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEG--AECKSFPEDH 402
Query: 431 REGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
+ + L R + V + W+ ID+ E+ G +P+ KL + +LL++
Sbjct: 403 ADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRI 453
|
May serve as electron transfer protein and supply electrons to P450 systems. Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O32886|FPRA_MYCLE NADPH-ferredoxin reductase FprA OS=Mycobacterium leprae (strain TN) GN=fprA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 180/465 (38%), Positives = 254/465 (54%), Gaps = 25/465 (5%)
Query: 22 VCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
+ +VGSGP+GF+ A LKA + VD+++ LPTP+GLVRSGVAPDHP+ K +
Sbjct: 9 IAIVGSGPSGFFAAASVLKAADASDEINVAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 68
Query: 77 QFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136
QF + + R FFGNV +G + +EL + Y V+ A GA+SDRAL IPGEDL G +A
Sbjct: 69 QFEKTAEDPRFRFFGNVIVGKHIEPAELAERYDAVIYAVGAQSDRALNIPGEDLPGSIAA 128
Query: 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196
+FV WYN HP+ SPDL S AV++G GNVALDV RIL+ + LA TDIA +A
Sbjct: 129 VDFVGWYNAHPNFHERSPDL-SGSRAVVIGNGNVALDVTRILITDPDVLAFTDIADHALE 187
Query: 197 ALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256
+L I +V +VGRRGP+Q A T ELRE+ I+ + V + L + +DE +
Sbjct: 188 SLRPRGIEEVVIVGRRGPLQTAFTTLELRELADIEGVDVLVDPAQL-EGISDENAAAAGK 246
Query: 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316
R+ ++L P G R + F F P + G V + + L
Sbjct: 247 TTRQNIKVLRDYTVRT---PKPGHRRIVFRFLTSPIEI----KGKGKVERIVLGQNELVT 299
Query: 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376
G+ A TG E+L ++++SIGY+ VP GLPFD+ +PN GRV +
Sbjct: 300 DDNGRVAAKDTGVREELPAQLIVRSIGYRGVPTPGLPFDDSSVTIPNTNGRV------NG 353
Query: 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQ 436
S+ E YV GW+KRGPTG+I TN +++TV ++ E+L G R L +
Sbjct: 354 SRNE---YVVGWIKRGPTGVIGTNKKDSQDTVDTLMENLAGANDTEKFGADHADR--LAE 408
Query: 437 LLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
L R + V + W+ ID E+ G +P+ KL +LL++
Sbjct: 409 WLAERQPKLVTSAHWQAIDRFERAAGEPHGRPRVKLPNLAELLRI 453
|
May serve as electron transfer protein and supply electrons to P450 systems. Mycobacterium leprae (taxid: 1769) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P65528|FPRB_MYCTU Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium tuberculosis GN=fprB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/472 (38%), Positives = 244/472 (51%), Gaps = 41/472 (8%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
PL V VVGSGPA Y A++ L Q QV++ ++LPTP+GLVRSGVAPDH TK V
Sbjct: 111 QPLTVAVVGSGPAAMYAADELL-VQQGVQVNVFEKLPTPYGLVRSGVAPDHQNTKRVTRL 169
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
F R+ H R F+ NV +G + +EL +H V+ A GA DR L I G L G +A
Sbjct: 170 FDRIAGHRRFRFYLNVEIGKHLGHAELLAHHHAVLYAVGAPDDRRLTIDGMGLPGTGTAT 229
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
E V W NGHPD +L DL S + VI+G GNVALDVAR+L ELA TDIA +A +A
Sbjct: 230 ELVAWLNGHPDFNDLPVDL-SHERVVIIGNGNVALDVARVLAADPHELAATDIADHALSA 288
Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN--- 254
L S++R+V + RRGP +A T L E++G+ D++ P D + + +
Sbjct: 289 LRNSAVREVVVAARRGPAHSAFT---LPELIGLTA------GADVVLDPGDHQRVLDDLA 339
Query: 255 ---SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311
+ R E+LS ++ +G+ + + P L R+G GV F
Sbjct: 340 IVADPLTRNKLEILSTLGDGSAPARRVGRPRIRLAYRLTPRRVL-GQRRAG---GVQFSV 395
Query: 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371
T GT E LD G+VL SIGY+ P+ LPFD +VPN GRV+
Sbjct: 396 T-------------GTDELRQLDAGLVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDP 442
Query: 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGR 431
+G+ G YV GW+KRGPTG I TN C+ +TV ++ D G L P
Sbjct: 443 GTGEPVP---GAYVAGWIKRGPTGFIGTNKSCSMQTVQALVADFNDGRLTDPVATPT--- 496
Query: 432 EGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483
L QL+ R + + + W ID+ E GS + + K T ++L AT
Sbjct: 497 -ALDQLVQARQPQAIGCAGWRAIDAAEIARGSADGRVRNKFTDVAEMLAAAT 547
|
Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P65529|FPRB_MYCBO Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fprB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/472 (38%), Positives = 244/472 (51%), Gaps = 41/472 (8%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
PL V VVGSGPA Y A++ L Q QV++ ++LPTP+GLVRSGVAPDH TK V
Sbjct: 111 QPLTVAVVGSGPAAMYAADELL-VQQGVQVNVFEKLPTPYGLVRSGVAPDHQNTKRVTRL 169
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
F R+ H R F+ NV +G + +EL +H V+ A GA DR L I G L G +A
Sbjct: 170 FDRIAGHRRFRFYLNVEIGKHLGHAELLAHHHAVLYAVGAPDDRRLTIDGMGLPGTGTAT 229
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
E V W NGHPD +L DL S + VI+G GNVALDVAR+L ELA TDIA +A +A
Sbjct: 230 ELVAWLNGHPDFNDLPVDL-SHERVVIIGNGNVALDVARVLAADPHELAATDIADHALSA 288
Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN--- 254
L S++R+V + RRGP +A T L E++G+ D++ P D + + +
Sbjct: 289 LRNSAVREVVVAARRGPAHSAFT---LPELIGLTA------GADVVLDPGDHQRVLDDLA 339
Query: 255 ---SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311
+ R E+LS ++ +G+ + + P L R+G GV F
Sbjct: 340 IVADPLTRNKLEILSTLGDGSAPARRVGRPRIRLAYRLTPRRVL-GQRRAG---GVQFSV 395
Query: 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371
T GT E LD G+VL SIGY+ P+ LPFD +VPN GRV+
Sbjct: 396 T-------------GTDELRQLDAGLVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDP 442
Query: 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGR 431
+G+ G YV GW+KRGPTG I TN C+ +TV ++ D G L P
Sbjct: 443 GTGEPVP---GAYVAGWIKRGPTGFIGTNKSCSMQTVQALVADFNDGRLTDPVATPT--- 496
Query: 432 EGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483
L QL+ R + + + W ID+ E GS + + K T ++L AT
Sbjct: 497 -ALDQLVQARQPQAIGCAGWRAIDAAEIARGSADGRVRNKFTDVAEMLAAAT 547
|
Mycobacterium bovis (taxid: 1765) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 483 | ||||||
| 255573812 | 492 | NADPH:adrenodoxin oxidoreductase, mitoch | 0.997 | 0.979 | 0.809 | 0.0 | |
| 225445178 | 486 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.989 | 0.983 | 0.822 | 0.0 | |
| 224065242 | 496 | predicted protein [Populus trichocarpa] | 0.964 | 0.939 | 0.830 | 0.0 | |
| 356513151 | 484 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.991 | 0.989 | 0.776 | 0.0 | |
| 449432374 | 486 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.997 | 0.991 | 0.761 | 0.0 | |
| 449487548 | 486 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.997 | 0.991 | 0.761 | 0.0 | |
| 356553385 | 484 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.991 | 0.989 | 0.770 | 0.0 | |
| 297802792 | 484 | hypothetical protein ARALYDRAFT_913213 [ | 0.989 | 0.987 | 0.723 | 0.0 | |
| 357520949 | 452 | NADPH:adrenodoxin oxidoreductase [Medica | 0.919 | 0.982 | 0.782 | 0.0 | |
| 22329089 | 483 | ferredoxin--NADP+ reductase [Arabidopsis | 0.987 | 0.987 | 0.728 | 0.0 |
| >gi|255573812|ref|XP_002527825.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223532749|gb|EEF34528.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/482 (80%), Positives = 433/482 (89%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
YKA WLSR F+ L+S+PLRVCVVGSGPAGFYTAEK LKAH+EA++DIIDRLPTPFGLVR
Sbjct: 10 YKAMKWLSRRFSNLTSHPLRVCVVGSGPAGFYTAEKMLKAHREAEIDIIDRLPTPFGLVR 69
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKIVINQFSR+VQ+ERCSFFGNVTLGSS+SL+ELR LYHVVVLAYGAESDR
Sbjct: 70 SGVAPDHPETKIVINQFSRLVQNERCSFFGNVTLGSSISLAELRDLYHVVVLAYGAESDR 129
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
ALGIPGEDL+G+HSAREFVWWYNGHPD KNL+PDLK TDTAVILGQGNVALD RILLRP
Sbjct: 130 ALGIPGEDLLGIHSAREFVWWYNGHPDCKNLNPDLKGTDTAVILGQGNVALDATRILLRP 189
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA TDIA +A ALE S IRKVYLVGRRGPVQAACTAKELRE+LGIK+L++HI+E D
Sbjct: 190 TAELARTDIACHALAALEQSCIRKVYLVGRRGPVQAACTAKELREVLGIKDLFIHIKEAD 249
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS 301
L+KS DEEE+K SRIQRR+Y+LLSKAAAS S P GQRELHFVFFRKPD FL+S R
Sbjct: 250 LLKSSDDEEELKGSRIQRRIYDLLSKAAASGPSHPSSGQRELHFVFFRKPDRFLDSEVRI 309
Query: 302 GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361
GHV+GVHFEKT LKG PGKQ AVGTG+FEDLDCGMVLKS+GYKSVPV+GLPFD+ KG+V
Sbjct: 310 GHVAGVHFEKTVLKGISPGKQVAVGTGKFEDLDCGMVLKSVGYKSVPVDGLPFDHQKGVV 369
Query: 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLA 421
P++ GRVL SGDS +E GLYVCGWLKRGPTGIIATNLYCAEETVASI +DLEQG LA
Sbjct: 370 PSVGGRVLTEASGDSKLLEKGLYVCGWLKRGPTGIIATNLYCAEETVASILQDLEQGALA 429
Query: 422 SSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
+++ LPKPG+EGL QLL +RNVR VPFS+WEKIDSEEKRLGS RNKP+EKLT++EDLLKV
Sbjct: 430 AATSLPKPGKEGLRQLLGDRNVRVVPFSSWEKIDSEEKRLGSSRNKPREKLTSWEDLLKV 489
Query: 482 AT 483
AT
Sbjct: 490 AT 491
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445178|ref|XP_002280736.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Vitis vinifera] gi|297738792|emb|CBI28037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/480 (82%), Positives = 431/480 (89%), Gaps = 2/480 (0%)
Query: 3 KARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
+A+ W SRSF++LSSNPLRVCVVGSGPAGFYTAEK LKAHQ A++DI+DRLPTPFGLVRS
Sbjct: 5 RAKTWFSRSFSSLSSNPLRVCVVGSGPAGFYTAEKMLKAHQGAEIDIVDRLPTPFGLVRS 64
Query: 63 GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRA 122
GVAPDHPETKIV+NQFSRV Q++RCSF GNVTLGSS+SLSELR+LYHVVVLAYGAESDR
Sbjct: 65 GVAPDHPETKIVVNQFSRVAQNDRCSFIGNVTLGSSISLSELRELYHVVVLAYGAESDRV 124
Query: 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT 182
LGIPGED G+HSAREFVWWYNGHPD KNL PDLKSTDTAVILGQGNVALDVARILLRPT
Sbjct: 125 LGIPGEDFAGIHSAREFVWWYNGHPDCKNLDPDLKSTDTAVILGQGNVALDVARILLRPT 184
Query: 183 EELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242
ELA TDIAS+A ALE SSIRKVYLVGRRGPVQAACTAKELREILGIK+L VHI+E DL
Sbjct: 185 MELAKTDIASHALAALEESSIRKVYLVGRRGPVQAACTAKELREILGIKDLNVHIQESDL 244
Query: 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG 302
+KSP DEEE+KN+RIQRRVYELLSK AAS S GQRELHFVFFRKPD FL+S +R+G
Sbjct: 245 LKSPADEEELKNNRIQRRVYELLSK-AASGPSLTSSGQRELHFVFFRKPDRFLDSGDRNG 303
Query: 303 HVSGVHFEKTALKGG-GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361
HV+GVH EKT LK G GKQ AVGTG+FEDL+CG+VLKSIGYKSVP+NGLPFD+HKGIV
Sbjct: 304 HVAGVHCEKTILKESVGSGKQIAVGTGQFEDLECGIVLKSIGYKSVPINGLPFDHHKGIV 363
Query: 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLA 421
PNI+GRVL N +G+ + VE GLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG L
Sbjct: 364 PNIQGRVLSNTTGNPTLVEEGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGKLP 423
Query: 422 SSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
S+S LPKPGREGLLQLL RNVR + FS WEKIDSEEKRLGSLRNKP+EKLTT E+LLKV
Sbjct: 424 STSSLPKPGREGLLQLLAERNVRVLSFSTWEKIDSEEKRLGSLRNKPREKLTTREELLKV 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065242|ref|XP_002301734.1| predicted protein [Populus trichocarpa] gi|222843460|gb|EEE81007.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/466 (83%), Positives = 421/466 (90%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
NPLRVCVVG+GPAGFYTAEK LKAHQ A+VDIIDRLPTPFGLVRSGVAPDHP+TKIV+NQ
Sbjct: 30 NPLRVCVVGTGPAGFYTAEKMLKAHQGAEVDIIDRLPTPFGLVRSGVAPDHPDTKIVMNQ 89
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
FS+V QHERCSFFGNVTLGSSVSLSELR+LYHVVVLAYGAESDRALGIPGE L G+HSAR
Sbjct: 90 FSKVAQHERCSFFGNVTLGSSVSLSELRELYHVVVLAYGAESDRALGIPGEYLSGIHSAR 149
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILL+ T LATTDIAS+A A
Sbjct: 150 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLQSTSVLATTDIASHALEA 209
Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257
LE SSIRKVYLVGRRGP QAACTAKELRE+LGIK+L +HI E DL KSP DEE +KN+RI
Sbjct: 210 LEQSSIRKVYLVGRRGPAQAACTAKELREVLGIKDLCIHINEVDLRKSPEDEEVLKNNRI 269
Query: 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317
RRVYELLSKAAASA S P QRELHFVFFRKPD FL+S E SG V+GVHFEKT LK
Sbjct: 270 HRRVYELLSKAAASAPSHPSSSQRELHFVFFRKPDRFLDSGEGSGRVAGVHFEKTMLKAV 329
Query: 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377
GPG+Q AVGTG +EDLDCG+VLKSIGYKSVPV+GLPFD+ KG+VPNI+GRVL + SGD +
Sbjct: 330 GPGRQIAVGTGSYEDLDCGLVLKSIGYKSVPVDGLPFDHEKGVVPNIKGRVLADTSGDPT 389
Query: 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQL 437
+E GLYVCGWLKRGPTGIIATNLYCAEETVASISED+ QG +AS+S LPKPGR+GLLQL
Sbjct: 390 LLEKGLYVCGWLKRGPTGIIATNLYCAEETVASISEDVHQGEIASASTLPKPGRQGLLQL 449
Query: 438 LDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483
LDNR VR VPFSAWEKIDSEE+RLG+LR+KP+EKLTTYEDLLK AT
Sbjct: 450 LDNRGVRVVPFSAWEKIDSEERRLGNLRSKPREKLTTYEDLLKAAT 495
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513151|ref|XP_003525277.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/483 (77%), Positives = 417/483 (86%), Gaps = 4/483 (0%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ AR WL RS +SSNPLRVCVVGSGPAGFYTAEK LKAHQ+AQVDIIDRLPTPFGLV
Sbjct: 6 LLGARRWLCRS---ISSNPLRVCVVGSGPAGFYTAEKMLKAHQQAQVDIIDRLPTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIVINQFSRV HERCSF GNVTLGSS+SLSELR+LYHVVVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVINQFSRVAHHERCSFLGNVTLGSSISLSELRELYHVVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+LGIPGE+L G+HSAREFVWWYNGHPDG+NL PDLKSTDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLGIPGENLKGIHSAREFVWWYNGHPDGRNLEPDLKSTDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELATTDIAS+A LE SSIR VYLVGRRGP QAACTAKELREILGI N+ + I+E
Sbjct: 183 PTTELATTDIASHALATLEESSIRVVYLVGRRGPAQAACTAKELREILGIHNVDIFIQES 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+ +P DEEE+K++RIQRRV+ELLSKAA S L QRELHFVFFRKP+SF ES +R
Sbjct: 243 DLLLTPVDEEELKSNRIQRRVHELLSKAATSKPKHACLNQRELHFVFFRKPNSFQESKDR 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
+GHVSG+HFEKT L+G PGKQ AVG GEFED+ CGM LKSIGY+SVPV+GLPFD+ KG+
Sbjct: 303 AGHVSGMHFEKTVLQGVSPGKQIAVGAGEFEDIKCGMALKSIGYRSVPVDGLPFDHKKGV 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420
VPN RGRVL + S D S +E GLYVCGWL+RGPTGIIATNLYCAEETV+SIS DLE G L
Sbjct: 363 VPNDRGRVLSDPS-DPSVLEKGLYVCGWLRRGPTGIIATNLYCAEETVSSISADLENGGL 421
Query: 421 ASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLK 480
SSS LPKPGR+GLLQLL +RNVR V S WEKIDSEE+RLGS RNKP+EKL ++++L K
Sbjct: 422 ISSSTLPKPGRDGLLQLLHDRNVRVVSLSDWEKIDSEERRLGSSRNKPREKLASWDELYK 481
Query: 481 VAT 483
+
Sbjct: 482 TTS 484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432374|ref|XP_004133974.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/482 (76%), Positives = 417/482 (86%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ +ARA RSF+ +S+P +CVVGSGPAGFYTAEK LKA AQVDIIDRLPTPFGLV
Sbjct: 3 LSRARALFCRSFSTFASHPTHICVVGSGPAGFYTAEKLLKALPNAQVDIIDRLPTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIV+NQF+RV QH+RCSFFGN+ LGSS+SL +LR+LYH VVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVVNQFTRVAQHQRCSFFGNIKLGSSISLLDLRELYHTVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+L IPGEDL G+ SAREFVWWYNGHPD +NL+P LK+TDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLKIPGEDLCGIQSAREFVWWYNGHPDCRNLNPGLKATDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELA+TDIAS+A AL+ SSIRKV LVGRRGPVQAACTAKELRE+LGIKNL++HI+E
Sbjct: 183 PTSELASTDIASHALEALQESSIRKVLLVGRRGPVQAACTAKELREVLGIKNLHIHIQEA 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+KSPTDEEE+KNSRIQRRVYELL+KAAAS G RELHFVFFRKP+ FL S ++
Sbjct: 243 DLLKSPTDEEEVKNSRIQRRVYELLAKAAASGPPHSGTGLRELHFVFFRKPEEFLSSVDK 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
HV+GV FEKT L+G PGKQ A GTGEFEDLDC MVLKSIGYKSVP++GLPFD+ KGI
Sbjct: 303 KDHVAGVRFEKTVLEGSSPGKQIARGTGEFEDLDCQMVLKSIGYKSVPIDGLPFDHQKGI 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420
VPNI GRV+ N+SGD+ Q+E GLYVCGWLKRGP+GIIATNLYCAEETVASI EDL++
Sbjct: 363 VPNISGRVVSNVSGDAIQLEEGLYVCGWLKRGPSGIIATNLYCAEETVASICEDLDKTAS 422
Query: 421 ASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLK 480
S PKPGREGL++ LD++NVR VPFSAWEKIDS EKRLGSL NKP+EKLTT+E+LLK
Sbjct: 423 ESFFSSPKPGREGLIRALDDQNVRYVPFSAWEKIDSVEKRLGSLENKPREKLTTWEELLK 482
Query: 481 VA 482
VA
Sbjct: 483 VA 484
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487548|ref|XP_004157681.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/482 (76%), Positives = 416/482 (86%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ +ARA RSF+ +S+P +CVVGSGPAGFYTAEK LKA AQVDIIDRLPTPFGLV
Sbjct: 3 LSRARALFCRSFSTFASHPTHICVVGSGPAGFYTAEKLLKALPNAQVDIIDRLPTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIV+NQF+RV QH+RCSFFGN+ LGSS+SL +LR+LYH VVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVVNQFTRVAQHQRCSFFGNIKLGSSISLLDLRELYHTVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+L IPGEDL G+ SAREFVWWYNGHPD +NL+P LK+TDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLKIPGEDLCGIQSAREFVWWYNGHPDCRNLNPGLKATDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELA+TDIAS+A AL+ SSIRKV LVGRRGPVQAACTAKELRE+LGIKNL++HI+E
Sbjct: 183 PTSELASTDIASHALEALQESSIRKVLLVGRRGPVQAACTAKELREVLGIKNLHIHIQEA 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+KSPTDEEE+KNSRIQRRVYELL+KAAAS G RELHFVFFRKP+ FL S ++
Sbjct: 243 DLLKSPTDEEEVKNSRIQRRVYELLAKAAASGPPHSGTGLRELHFVFFRKPEEFLSSVDK 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
HV+GV FEKT L+G PGKQ A GTGEFEDLDC MVLKSIGYKSVP++ LPFD+ KGI
Sbjct: 303 KDHVAGVRFEKTVLEGSSPGKQIARGTGEFEDLDCQMVLKSIGYKSVPIDDLPFDHQKGI 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420
VPNI GRV+ NISGD+ Q+E GLYVCGWLKRGP+GIIATNLYCAEETVASI EDL++
Sbjct: 363 VPNISGRVVSNISGDAIQLEKGLYVCGWLKRGPSGIIATNLYCAEETVASICEDLDKTAS 422
Query: 421 ASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLK 480
S PKPGREGL++ LD++NVR VPFSAWEKIDS EKRLGSL NKP+EKLTT+E+LLK
Sbjct: 423 ESFFSSPKPGREGLIRALDDQNVRYVPFSAWEKIDSVEKRLGSLENKPREKLTTWEELLK 482
Query: 481 VA 482
VA
Sbjct: 483 VA 484
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553385|ref|XP_003545037.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/483 (77%), Positives = 414/483 (85%), Gaps = 4/483 (0%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ AR WL RS +SSNPLRVCVVGSGPAGFYTAEK LKAHQ+A VDIIDRL TPFGLV
Sbjct: 6 LLGARRWLCRS---ISSNPLRVCVVGSGPAGFYTAEKMLKAHQQAHVDIIDRLSTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIVINQFSRV HERCSF GNVTLGSS+SLSELR LYHVVVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVINQFSRVAHHERCSFLGNVTLGSSISLSELRDLYHVVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+LGIPGE+L G+HSAREFVWWYNGHPDG+NL PDLKSTDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLGIPGENLKGIHSAREFVWWYNGHPDGRNLEPDLKSTDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELATTDIAS+A LE SSIR VYLVGRRGP QAACTAKELREILGI N+ + I+E
Sbjct: 183 PTTELATTDIASHALATLEESSIRVVYLVGRRGPAQAACTAKELREILGIHNVDIFIQES 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+ +P DEEE+K++RIQRRV+ELLSKAA S L QRELHFVFFRKP+SF ES +R
Sbjct: 243 DLLLTPVDEEELKSNRIQRRVHELLSKAATSKPKHACLNQRELHFVFFRKPNSFQESKDR 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
+GHVSG+HFEKT L+G PGKQ AVG GEFED+ CGM LKSIGY+SVPV+GLPFD+ KG+
Sbjct: 303 AGHVSGMHFEKTVLQGVSPGKQIAVGAGEFEDIKCGMALKSIGYRSVPVDGLPFDHKKGV 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420
VPN RGRVL + S D S +E GLYVCGWLKRGPTGIIATNLYCAEETV+SIS DLE+G L
Sbjct: 363 VPNDRGRVLSDPS-DPSVLEKGLYVCGWLKRGPTGIIATNLYCAEETVSSISADLEKGGL 421
Query: 421 ASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLK 480
SS LPKPGR+GLLQLL +RN+R V S WEKIDSEE+RLGS RNKP+EKL ++++L K
Sbjct: 422 IWSSTLPKPGRDGLLQLLHDRNIRVVSLSDWEKIDSEERRLGSSRNKPREKLASWDELYK 481
Query: 481 VAT 483
+
Sbjct: 482 TTS 484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802792|ref|XP_002869280.1| hypothetical protein ARALYDRAFT_913213 [Arabidopsis lyrata subsp. lyrata] gi|297315116|gb|EFH45539.1| hypothetical protein ARALYDRAFT_913213 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/484 (72%), Positives = 404/484 (83%), Gaps = 6/484 (1%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
Y AR +SR +++SS PL VC+VGSGPAG YTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4 YLARYMVSRYLSSVSSRPLHVCIVGSGPAGLYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKI INQFSRV +HERCSF+GNV LGS + LSELR LYHVVVLAYGAESD+
Sbjct: 64 SGVAPDHPETKIAINQFSRVAKHERCSFYGNVKLGSDLLLSELRDLYHVVVLAYGAESDK 123
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
LGIPGE L G++SAREFVWWYNGHPD +L PDLKS+DTAVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKSSDTAVILGQGNVALDVARILLRP 183
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA+TDIA +A + LE SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL + I+E D
Sbjct: 184 TTELASTDIARHALSVLEESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLRIRIKETD 243
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSK--AAASASSQPMLGQRELHFVFFRKPDSFLESNE 299
L +P DEEEMKNSR ++R+YELLSK AAA+ +S+ QRELHFVFFR+PD FLES+E
Sbjct: 244 LSLTPADEEEMKNSRARKRIYELLSKAAAAAAGTSEADPDQRELHFVFFRQPDRFLESDE 303
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359
R GHVSGV+ EKT L+ G GKQ AVGTGEFEDL+C MVLK+IGYKSVP+NGLPFD+ KG
Sbjct: 304 RKGHVSGVNLEKTILESVGSGKQIAVGTGEFEDLNCSMVLKAIGYKSVPINGLPFDHKKG 363
Query: 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419
+VPN+RGRV+ SGD SQ E GLYVCGWLKRGP GIIATNLYCAEETV SISED+E+GV
Sbjct: 364 VVPNVRGRVVSQTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSISEDIEEGV 423
Query: 420 LASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLL 479
SS K G +GL++LL+ R V+ V FS WEKID++EK++G +NKP+EKL T+EDLL
Sbjct: 424 CKSS----KAGSKGLMELLEKRKVKKVEFSGWEKIDAKEKQMGIEKNKPREKLVTWEDLL 479
Query: 480 KVAT 483
A
Sbjct: 480 AAAA 483
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520949|ref|XP_003630763.1| NADPH:adrenodoxin oxidoreductase [Medicago truncatula] gi|355524785|gb|AET05239.1| NADPH:adrenodoxin oxidoreductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/445 (78%), Positives = 388/445 (87%), Gaps = 1/445 (0%)
Query: 39 LKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98
LKA Q+AQVDIIDRLPTPFGLVRSGVAPDHPETKIV+NQFSRV QHERCSFFGNVTLGS+
Sbjct: 2 LKASQQAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQFSRVAQHERCSFFGNVTLGSN 61
Query: 99 VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS 158
VSL+ELR+LYHVVVLAYGAESDR+LGIPGE+L G+ SAREFVWWYNGHPDG+NL PDLKS
Sbjct: 62 VSLAELRKLYHVVVLAYGAESDRSLGIPGENLKGILSAREFVWWYNGHPDGRNLDPDLKS 121
Query: 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA 218
DTAVILGQGNVALDVARILLRPT ELATTDIAS+A + LE SSIR VYLVGRRGP QAA
Sbjct: 122 IDTAVILGQGNVALDVARILLRPTTELATTDIASHALSTLEESSIRVVYLVGRRGPAQAA 181
Query: 219 CTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPML 278
CTAKELRE+LGIKNL V I+E DL +PTDEEE+K++RI RR++ELLSKAA S L
Sbjct: 182 CTAKELREVLGIKNLDVSIQESDLHLTPTDEEELKSNRIHRRIFELLSKAATSRPIHAGL 241
Query: 279 GQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMV 338
QR+L FVFFRKPDSF ES + +GHVSGV FEKT LKG GPGKQ AVGTGEFEDL CGMV
Sbjct: 242 NQRQLRFVFFRKPDSFQESKDSTGHVSGVLFEKTVLKGVGPGKQIAVGTGEFEDLKCGMV 301
Query: 339 LKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398
LKSIGYKSVPV+GLPFD+ KGIVPN +GRVL + S D++ +E GLYVCGWLKRGPTGI+A
Sbjct: 302 LKSIGYKSVPVDGLPFDHKKGIVPNDKGRVLSDTS-DTAVLEEGLYVCGWLKRGPTGIVA 360
Query: 399 TNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEE 458
TNLYCAEETV+SI EDLE+G L SS+ PKPGR+GLL LL +RNVR V F+ WEKIDSEE
Sbjct: 361 TNLYCAEETVSSILEDLEKGGLISSTAAPKPGRDGLLNLLHDRNVRTVSFNDWEKIDSEE 420
Query: 459 KRLGSLRNKPKEKLTTYEDLLKVAT 483
KRLGSLRNKP+EKL T+ +LL +
Sbjct: 421 KRLGSLRNKPREKLATWNELLTATS 445
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329089|ref|NP_194962.2| ferredoxin--NADP+ reductase [Arabidopsis thaliana] gi|17481351|dbj|BAB79228.1| MFDR [Arabidopsis thaliana] gi|28192433|gb|AAL82814.1| NADP adrenodoxin-like ferredoxin reductase [Arabidopsis thaliana] gi|332660646|gb|AEE86046.1| ferredoxin--NADP+ reductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/482 (72%), Positives = 407/482 (84%), Gaps = 5/482 (1%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
Y AR +SR F++ SS PL VC+VGSGPAGFYTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4 YLARYMVSRYFSSASSRPLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKI INQFSRV QHERCSF GNV LGS +SLSELR LYHVVVLAYGAESD+
Sbjct: 64 SGVAPDHPETKIAINQFSRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDK 123
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
LGIPGE L G++SAREFVWWYNGHPD +L PDLK++D+AVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRP 183
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA+TDIA++A +AL+ SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL++ I++ D
Sbjct: 184 TTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTD 243
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM-LGQRELHFVFFRKPDSFLESNER 300
L +P DEEEMK SR ++R+YELLSKAAA+A + QRELHFVFFR+PD FLES+ER
Sbjct: 244 LSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDER 303
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
GHVSGV+ +KT L+ G GKQ AVGTGEFEDL+C MVLK+IGYKSVPVNGLPFD+ KG+
Sbjct: 304 KGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGV 363
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420
VPN++GRV+ + SGD SQ E GLYVCGWLKRGP GIIATNLYCAEETV SISED+E+GV
Sbjct: 364 VPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSISEDIEEGVW 423
Query: 421 ASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLK 480
SS K G +GL+QLL+ R V+ V FS WEKID++EK++G RNKP+EKL T+EDLL
Sbjct: 424 KSS----KAGSKGLMQLLEKRKVKKVEFSGWEKIDAKEKQMGIERNKPREKLVTWEDLLA 479
Query: 481 VA 482
A
Sbjct: 480 AA 481
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 483 | ||||||
| TAIR|locus:2127811 | 483 | AT4G32360 [Arabidopsis thalian | 0.987 | 0.987 | 0.715 | 1.5e-184 | |
| MGI|MGI:104724 | 494 | Fdxr "ferredoxin reductase" [M | 0.937 | 0.917 | 0.467 | 5.4e-102 | |
| UNIPROTKB|F1NRB1 | 466 | FDXR "NADPH:adrenodoxin oxidor | 0.942 | 0.976 | 0.456 | 2.1e-100 | |
| UNIPROTKB|P22570 | 491 | FDXR "NADPH:adrenodoxin oxidor | 0.933 | 0.918 | 0.472 | 3.4e-100 | |
| UNIPROTKB|E7EQC1 | 522 | FDXR "NADPH:adrenodoxin oxidor | 0.917 | 0.848 | 0.477 | 7.1e-100 | |
| UNIPROTKB|J3QQX3 | 463 | FDXR "NADPH:adrenodoxin oxidor | 0.432 | 0.451 | 0.606 | 4.7e-99 | |
| RGD|621648 | 494 | Fdxr "ferredoxin reductase" [R | 0.937 | 0.917 | 0.457 | 6.4e-99 | |
| UNIPROTKB|P56522 | 494 | Fdxr "NADPH:adrenodoxin oxidor | 0.937 | 0.917 | 0.457 | 6.4e-99 | |
| UNIPROTKB|P08165 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.933 | 0.916 | 0.461 | 1.3e-98 | |
| UNIPROTKB|E2RDC3 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.923 | 0.906 | 0.462 | 3.5e-98 |
| TAIR|locus:2127811 AT4G32360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1790 (635.2 bits), Expect = 1.5e-184, P = 1.5e-184
Identities = 345/482 (71%), Positives = 400/482 (82%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
Y AR +SR F++ SS PL VC+VGSGPAGFYTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4 YLARYMVSRYFSSASSRPLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKI INQFSRV QHERCSF GNV LGS +SLSELR LYHVVVLAYGAESD+
Sbjct: 64 SGVAPDHPETKIAINQFSRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDK 123
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
LGIPGE L G++SAREFVWWYNGHPD +L PDLK++D+AVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRP 183
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA+TDIA++A +AL+ SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL++ I++ D
Sbjct: 184 TTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTD 243
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLXXXXXXX-XXQPMLGQRELHFVFFRKPDSFLESNER 300
L +P DEEEMK SR ++R+YELL + QRELHFVFFR+PD FLES+ER
Sbjct: 244 LSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDER 303
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
GHVSGV+ +KT L+ G GKQ AVGTGEFEDL+C MVLK+IGYKSVPVNGLPFD+ KG+
Sbjct: 304 KGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGV 363
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420
VPN++GRV+ + SGD SQ E GLYVCGWLKRGP GIIATNLYCAEETV SISED+E+GV
Sbjct: 364 VPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSISEDIEEGVW 423
Query: 421 ASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLK 480
SS K G +GL+QLL+ R V+ V FS WEKID++EK++G RNKP+EKL T+EDLL
Sbjct: 424 KSS----KAGSKGLMQLLEKRKVKKVEFSGWEKIDAKEKQMGIERNKPREKLVTWEDLLA 479
Query: 481 VA 482
A
Sbjct: 480 AA 481
|
|
| MGI|MGI:104724 Fdxr "ferredoxin reductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 224/479 (46%), Positives = 297/479 (62%)
Query: 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
+ F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHP
Sbjct: 32 QKFSTQEKTP-QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPDHP 90
Query: 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
E K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + LGIPGE+
Sbjct: 91 EVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPGEE 150
Query: 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TD
Sbjct: 151 LPGVVSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209
Query: 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
I A AL S ++ V++VGRRGP+Q A T KELRE++ + + D + +
Sbjct: 210 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGL---Q 266
Query: 250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
+ +K+ R +RR+ ELL + L R FFR P L + +
Sbjct: 267 DRIKDVPRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPDGQ-R 325
Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVP 362
V+G+ T+L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD G++P
Sbjct: 326 VAGIRLAVTSLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGVIP 384
Query: 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLAS 422
N GRV+ N+ G LY GW+KRGPTG+I T + + T ++ EDL+ G+L S
Sbjct: 385 NTEGRVV-NVPG--------LYCSGWVKRGPTGVITTTMTDSFLTSQALLEDLKAGLLPS 435
Query: 423 SSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
P+PG + LL NR VRPV FS WEK+D+EE G KP+EKL ++L++
Sbjct: 436 G---PRPGYVAIQALLSNRGVRPVSFSDWEKLDAEEVSRGQGTGKPREKLVDRREMLRL 491
|
|
| UNIPROTKB|F1NRB1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
Identities = 221/484 (45%), Positives = 303/484 (62%)
Query: 5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64
R WLS A P R+CVVGSGPAGFYTA+ LK H AQVDI ++LP PFGLVR GV
Sbjct: 2 RRWLSSRAPA----P-RICVVGSGPAGFYTAQHILKHHDLAQVDIYEKLPVPFGLVRFGV 56
Query: 65 APDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALG 124
APDHPE K VIN F+ + +RC+++GNVT+G V++ EL+Q YH VVL+YGAE +R LG
Sbjct: 57 APDHPEVKNVINTFTHTARSDRCAYYGNVTVGRDVTVGELQQAYHAVVLSYGAEDNRVLG 116
Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
IPGE+L GV+SAR FV WYNG P+ ++L PDL S +TA+ILG GNVALD+ARILL P +
Sbjct: 117 IPGENLSGVYSARAFVGWYNGLPENRDLKPDL-SCETALILGHGNVALDIARILLSPLDF 175
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
L TDI + AL S +++V+L GRRGP+Q A T KELRE++ + + D
Sbjct: 176 LRKTDITDCSLAALACSKVKRVWLAGRRGPLQVAFTIKELREMINLPGTQPVLNPADFTG 235
Query: 245 SPTDEEEMKNS-RIQRRVYELLXXXXXXXXXQP-MLGQ----RELHFVFFRKPDSFLESN 298
E +K++ R ++R+ EL+ + ++ Q R+ F R P L +
Sbjct: 236 L---ENAVKDAPRPRKRLTELMIKTALEKHREKAVMAQAAVPRQWGLKFQRSPQEVLPTA 292
Query: 299 ERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNH 357
+ V GV T L+G G + AV TG+ E+L+CG+VL SIGY+S+P++ +PFD
Sbjct: 293 DGM-RVRGVRMALTRLEGSGDSAK-AVPTGDMEELECGLVLSSIGYRSLPLDPAVPFDTQ 350
Query: 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQ 417
I+PN GRV+ G GLY GW+KRGP G+I T + + +T S+ EDL++
Sbjct: 351 HSIIPNNLGRVM----GVP-----GLYCSGWVKRGPVGVIITTMNDSFDTAQSVLEDLQE 401
Query: 418 GVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYED 477
GVL S + K G + +L +R +RPV FS WEKID+ E G KP+EK+ ++
Sbjct: 402 GVLDVS--VSKEGFGAVGSILRSRGIRPVSFSEWEKIDAAEVARGKAAGKPREKIVDPQE 459
Query: 478 LLKV 481
+L++
Sbjct: 460 MLQL 463
|
|
| UNIPROTKB|P22570 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 225/476 (47%), Positives = 290/476 (60%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE
Sbjct: 32 FSTQEKTP-QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L
Sbjct: 90 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI
Sbjct: 150 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 208
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
A L S ++ V+LVGRRGP+Q A T KELRE++ + + D + +E
Sbjct: 209 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKE 268
Query: 252 MKNSRIQRRVYELLXXXXX-----XXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
+ R +R+ ELL + R FFR P L S + +G
Sbjct: 269 VPRPR--KRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAG 325
Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIR 365
V T L+G + AV TG+ EDL CG+VL SIGYKS PV+ +PFD+ G++PN+
Sbjct: 326 VRLAVTRLEGVDEATR-AVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVE 384
Query: 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSG 425
GRV+ V GLY GW+KRGPTG+IAT + + T + +DL+ G+L S
Sbjct: 385 GRVM--------DVP-GLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPSG-- 433
Query: 426 LPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
P+PG + LL +R VRPV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 434 -PRPGYAAIQALLSSRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDPQEMLRL 488
|
|
| UNIPROTKB|E7EQC1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 223/467 (47%), Positives = 287/467 (61%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE K VIN F++
Sbjct: 71 QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQ 129
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L GV SAR FV
Sbjct: 130 TAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFV 189
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI A L
Sbjct: 190 GWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQ 248
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
S ++ V+LVGRRGP+Q A T KELRE++ + + D + +E+ R +R
Sbjct: 249 SRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPR--KR 306
Query: 261 VYELLXXXXX-----XXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315
+ ELL + R FFR P L S + +GV T L+
Sbjct: 307 LTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAGVRLAVTRLE 365
Query: 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISG 374
G + AV TG+ EDL CG+VL SIGYKS PV+ +PFD+ G++PN+ GRV+
Sbjct: 366 GVDEATR-AVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVM----- 419
Query: 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGL 434
V GLY GW+KRGPTG+IAT + + T + +DL+ G+L S P+PG +
Sbjct: 420 ---DVP-GLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPSG---PRPGYAAI 472
Query: 435 LQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
LL +R VRPV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 473 QALLSSRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDPQEMLRL 519
|
|
| UNIPROTKB|J3QQX3 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
Identities = 128/211 (60%), Positives = 151/211 (71%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE
Sbjct: 32 FSTQEKTP-QICVVGSGPAGFYTAQHLLKQHPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 90
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L
Sbjct: 91 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 150
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI
Sbjct: 151 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 209
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAK 222
A L S ++ V+LVGRRGP+Q A T K
Sbjct: 210 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIK 240
|
|
| RGD|621648 Fdxr "ferredoxin reductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 219/479 (45%), Positives = 292/479 (60%)
Query: 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
+ F+ + P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHP
Sbjct: 32 KKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHP 90
Query: 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
E K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + L IPGE+
Sbjct: 91 EVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEE 150
Query: 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TD
Sbjct: 151 LPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209
Query: 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
I A L S ++ V++VGRRGP+Q A T KELRE++ + + D + +
Sbjct: 210 ITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL---Q 266
Query: 250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
+ +K+ R ++R+ ELL + L R FFR P L + +
Sbjct: 267 DRIKDVPRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPD-GRR 325
Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVP 362
V+G+ T L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD GI+P
Sbjct: 326 VAGIRLAVTRLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGIIP 384
Query: 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLAS 422
N GRV+ GLY GW+KRGPTG+I T + + T + +DL+ G+L S
Sbjct: 385 NTEGRVVN---------APGLYCSGWVKRGPTGVITTTMTDSFLTSQVLLKDLKAGLLPS 435
Query: 423 SSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
P+PG + LL +R VRPV FS WEK+D+EE G KP+EKL ++L++
Sbjct: 436 G---PRPGYTAIQALLSDRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDRREMLQL 491
|
|
| UNIPROTKB|P56522 Fdxr "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 219/479 (45%), Positives = 292/479 (60%)
Query: 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
+ F+ + P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHP
Sbjct: 32 KKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHP 90
Query: 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
E K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + L IPGE+
Sbjct: 91 EVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEE 150
Query: 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TD
Sbjct: 151 LPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209
Query: 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
I A L S ++ V++VGRRGP+Q A T KELRE++ + + D + +
Sbjct: 210 ITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL---Q 266
Query: 250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
+ +K+ R ++R+ ELL + L R FFR P L + +
Sbjct: 267 DRIKDVPRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPD-GRR 325
Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVP 362
V+G+ T L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD GI+P
Sbjct: 326 VAGIRLAVTRLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGIIP 384
Query: 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLAS 422
N GRV+ GLY GW+KRGPTG+I T + + T + +DL+ G+L S
Sbjct: 385 NTEGRVVN---------APGLYCSGWVKRGPTGVITTTMTDSFLTSQVLLKDLKAGLLPS 435
Query: 423 SSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
P+PG + LL +R VRPV FS WEK+D+EE G KP+EKL ++L++
Sbjct: 436 G---PRPGYTAIQALLSDRGVRPVSFSDWEKLDAEEVARGQGTGKPREKLVDRREMLQL 491
|
|
| UNIPROTKB|P08165 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 220/477 (46%), Positives = 292/477 (61%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE
Sbjct: 32 FSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV 90
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ + +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L
Sbjct: 91 KNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELP 150
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L TDI
Sbjct: 151 GVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDIT 209
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
A AL S ++ V++VGRRGP+Q A T KELRE++ + + D + ++
Sbjct: 210 EAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGL---QDR 266
Query: 252 MKNS-RIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305
+K + R ++R+ ELL + R FFR P L S + +
Sbjct: 267 IKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAA 325
Query: 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNI 364
G+ T L+G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD G+VPN+
Sbjct: 326 GIRLAVTRLEGIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNM 384
Query: 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSS 424
GRV+ V GLY GW+KRGPTG+I T + + T + +DL+ G L S
Sbjct: 385 EGRVV--------DVP-GLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG- 434
Query: 425 GLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
P+PG + LLD+R V PV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 435 --PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRL 489
|
|
| UNIPROTKB|E2RDC3 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
Identities = 217/469 (46%), Positives = 287/469 (61%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQF 78
P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VIN F
Sbjct: 38 PPQICVVGSGPAGFYTAQHLLKHHPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTF 97
Query: 79 SRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE 138
++ + RC+F GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L GV SAR
Sbjct: 98 TQTARSGRCAFHGNVVVGRDVAVPELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARA 157
Query: 139 FVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTAL 198
FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TDI A L
Sbjct: 158 FVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPEYLEKTDITEAALGVL 216
Query: 199 EGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQ 258
S ++ V++VGRRGP+Q A T KELRE++ + + D + +E+ R
Sbjct: 217 RQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPR-- 274
Query: 259 RRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
+R+ ELL + R FFR P L S + +G+ T
Sbjct: 275 KRLTELLLRTATERPGAEEAARQASASRTWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTR 333
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNI 372
L+G G + AV TG+ EDL CG+VL S+GYKS P++ +PFD+ +G++PN+ GRV+
Sbjct: 334 LEGVGEAAR-AVPTGDSEDLPCGLVLSSVGYKSRPIDPSVPFDSKRGVIPNMEGRVI--- 389
Query: 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGRE 432
V GLY GW+KRGPTG+IAT + + T + +DL+ G+L P+PG
Sbjct: 390 -----DVP-GLYCSGWVKRGPTGVIATTMTDSFLTGQMLLQDLKAGLLPLG---PRPGYA 440
Query: 433 GLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKV 481
+ LL +R VRPV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 441 AIEALLSSRGVRPVSFSDWEKLDAEEVSRGKGAGKPREKLLDPQEMLRL 489
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9V3T9 | ADRO_DROME | 1, ., 1, 8, ., 1, ., 2 | 0.4276 | 0.8964 | 0.9291 | yes | no |
| P08165 | ADRO_BOVIN | 1, ., 1, 8, ., 1, ., 2 | 0.4534 | 0.9378 | 0.9207 | yes | no |
| O32886 | FPRA_MYCLE | 1, ., 1, 8, ., 1, ., 2 | 0.3870 | 0.9109 | 0.9649 | yes | no |
| Q61578 | ADRO_MOUSE | 1, ., 1, 8, ., 1, ., 2 | 0.4596 | 0.9378 | 0.9170 | yes | no |
| Q54KG7 | ADRO_DICDI | 1, ., 1, 8, ., 1, ., 2 | 0.3621 | 0.9565 | 0.8970 | yes | no |
| P48360 | ADRO_YEAST | 1, ., 1, 8, ., 1, ., 2 | 0.3095 | 0.9006 | 0.8823 | yes | no |
| P56522 | ADRO_RAT | 1, ., 1, 8, ., 1, ., 2 | 0.4524 | 0.9358 | 0.9149 | yes | no |
| P22570 | ADRO_HUMAN | 1, ., 1, 8, ., 1, ., 2 | 0.4726 | 0.9337 | 0.9185 | yes | no |
| O05783 | FPRA_MYCTU | 1, ., 1, 8, ., 1, ., 2 | 0.3927 | 0.9171 | 0.9714 | yes | no |
| O59710 | ADRO_SCHPO | 1, ., 1, 8, ., 1, ., 2 | 0.3470 | 0.9254 | 0.9530 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 483 | |||
| PLN02852 | 491 | PLN02852, PLN02852, ferredoxin-NADP+ reductase | 0.0 | |
| PTZ00188 | 506 | PTZ00188, PTZ00188, adrenodoxin reductase; Provisi | 1e-51 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 2e-39 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 2e-25 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 2e-20 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 8e-16 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 2e-15 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 3e-15 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 4e-15 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 1e-14 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 2e-13 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 5e-13 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 2e-12 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 1e-11 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 7e-11 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 7e-11 | |
| PRK12775 | 1006 | PRK12775, PRK12775, putative trifunctional 2-polyp | 7e-11 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 1e-10 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 2e-08 | |
| PRK12779 | 944 | PRK12779, PRK12779, putative bifunctional glutamat | 3e-08 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 4e-07 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-05 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 0.001 |
| >gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Score = 865 bits (2237), Expect = 0.0
Identities = 348/489 (71%), Positives = 397/489 (81%), Gaps = 8/489 (1%)
Query: 1 MYKARAWLSRSF-----TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55
+AR WLSR+ ++ +S PL VCVVGSGPAGFYTA+K LKAH A+VDII+RLPT
Sbjct: 3 RLRARTWLSRALSFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62
Query: 56 PFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAY 115
PFGLVRSGVAPDHPETK V NQFSRV +R SFFGNVTLG VSLSELR LYHVVVLAY
Sbjct: 63 PFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAY 122
Query: 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175
GAESDR LGIPGEDL GV SAREFVWWYNGHPD +L PDLKS+DTAV+LGQGNVALD A
Sbjct: 123 GAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCA 182
Query: 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235
RILLRPT+ELA+TDIA +A AL GSS+RKVYLVGRRGPVQAACTAKELRE+LG+KN+ V
Sbjct: 183 RILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRV 242
Query: 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295
I+E DL SP DEEE+K SR +RRVYELLSKAAA+ P GQRELHFVFFR P FL
Sbjct: 243 RIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFL 302
Query: 296 ESNERSGHVSGVHFEKTALKG-GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354
+S + +GHV+GV E+T L+G G GKQ AVGTGEFEDL CG+VLKSIGYKS+PV+GLPF
Sbjct: 303 DSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPF 362
Query: 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414
D+ +G+VPN+ GRVL + SG + E GLYV GWLKRGPTGII TNL CAEETVASI+ED
Sbjct: 363 DHKRGVVPNVHGRVLSSASG--ADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAED 420
Query: 415 LEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTT 474
LEQG L + PKPGR+GLL+LL++R VR VPFS WEKIDS EK G R KP+EK+T+
Sbjct: 421 LEQGRLRGVASPPKPGRDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITS 480
Query: 475 YEDLLKVAT 483
E++LK A
Sbjct: 481 IEEMLKAAN 489
|
Length = 491 |
| >gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-51
Identities = 130/501 (25%), Positives = 235/501 (46%), Gaps = 56/501 (11%)
Query: 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66
+ + F + P +V ++G+GP+ Y + LK H+ +VDI ++LP P+GL+R GVAP
Sbjct: 27 FTGKCFFTNEAKPFKVGIIGAGPSALYCCKHLLK-HERVKVDIFEKLPNPYGLIRYGVAP 85
Query: 67 DHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGA-ESDRALGI 125
DH K F V FFGNV +G + + ELR Y+ V+ GA E +G
Sbjct: 86 DHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGASEVSIPIGQ 145
Query: 126 PGEDLI------------GVHSAREFVWWYNGHPDG---KNLSPDLKSTD---TAVILGQ 167
ED G+ AR+ +++YN + K + L S + T++I+G
Sbjct: 146 QDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGN 205
Query: 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227
GNV+LD+ARIL++ ++L+ TDI+S ++ +I+ +Y+VGRRG Q++ T ELRE+
Sbjct: 206 GNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELREL 265
Query: 228 LGIKNLYVHIRED--DL---IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282
+ ++N V + + DL +KS DEE + Q +++ + K +
Sbjct: 266 ISLENTKVILSKKNYDLCCHLKS--DEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTY 323
Query: 283 --LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLK 340
+ F+F+ + + G + V E L P + E + L +V+
Sbjct: 324 KIIEFIFYFEIRQIRPID---GAMKNVELE---LNKNVPMSFSSF--KENKVLVTPLVIF 375
Query: 341 SIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400
+ G+K N N+ + ++ D Q + ++ GW +GP G IA+
Sbjct: 376 ATGFKK--------SN---FAENLYNQSVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQ 424
Query: 401 LYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKR 460
+ ++ + + L++ + + + LL + + V F W + EK+
Sbjct: 425 ILNSKNSTHLVLNFLQKVDIFFDNDIS--------SLLKEKQIPYVSFDDWTYLHQLEKQ 476
Query: 461 LGSLRNKPKEKLTTYEDLLKV 481
+G+ +NK +K + ++L++
Sbjct: 477 MGAQQNKIAQKFSQTGEVLRI 497
|
Length = 506 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 111/453 (24%), Positives = 162/453 (35%), Gaps = 42/453 (9%)
Query: 17 SNPLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
R VVGSGP A Y A + L + + +P P GLVR GV DH K+
Sbjct: 3 PKDFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKL 60
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIG 132
+ + R GN+ G+ V EL + A G ++DR IPGE +
Sbjct: 61 IHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE--LP 118
Query: 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIAS 192
+ V P G + DL S + VALD +L + DI
Sbjct: 119 GSRTGKKVAVIGAGPAGLAAADDL-SRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILD 177
Query: 193 YAWTALEGSSIRKVYLVGRRG-PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
LE S + + L R G + KE + D E+
Sbjct: 178 RRLELLERSGV-EFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLD------IPGED 230
Query: 252 MKN-----SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
K + R E+L A + P G+ V D+ ++ + G
Sbjct: 231 AKGVAFALDFLTRLNKEVL-GDFAEDRTPPAKGK---RVVVIGGGDTAMDCA-GTALRLG 285
Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366
+ T E+ + ++S G + V LPF K + N G
Sbjct: 286 AKSVTCFYREDR-----DDETNEWPTWAAQLEVRSAGEEGVE--RLPFVQPKAFIGNEGG 338
Query: 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV-ASISE--DLEQGVLASS 423
RV G +VE G YV GW +RGP G+I T A +TV +I D G+L
Sbjct: 339 RVTGVKFG---RVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEF 395
Query: 424 S-GLPKPGREGLLQLLDNRNVRPVPFSAWEKID 455
L K GR + + L ++ P F+ + +
Sbjct: 396 GLKLDKRGRIKVDENLQQTSI-PGVFAGGDAVR 427
|
Length = 457 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 89/384 (23%), Positives = 127/384 (33%), Gaps = 137/384 (35%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEK-TLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE 70
F +V V+G+GPAG A + K + V I + GL+R G+ PE
Sbjct: 133 FKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGGLLRYGI----PE 185
Query: 71 TKIVINQFSRVVQHE-----------RCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAES 119
++ + +V E R N +G ++L ELR Y V + GA
Sbjct: 186 FRLPKD----IVDREVERLLKLGVEIRT----NTEVGRDITLDELRAGYDAVFIGTGAGL 237
Query: 120 DRALGIPGEDLIGVHSAREF------VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALD 173
R LGIPGE+L GV+SA +F P GK + V++G GN A+D
Sbjct: 238 PRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRV----------VVIGGGNTAMD 287
Query: 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNL 233
AR R G+ V +V RRG
Sbjct: 288 AARTAKR------------------LGA--ESVTIVYRRG-------------------- 307
Query: 234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------F 285
EEM AS + E+ F
Sbjct: 308 ---------------REEM------------------PAS------EEEVEHAKEEGVEF 328
Query: 286 VFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
+ P L G V+GV F + L + G++ G L +V+K+IG
Sbjct: 329 EWLAAPVEILGDE---GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385
Query: 345 KSVPVNGLPFDNHKGIVPNIRGRV 368
N L G+ N G +
Sbjct: 386 TP---NPLILSTTPGLELNRWGTI 406
|
Length = 457 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 85/378 (22%), Positives = 140/378 (37%), Gaps = 78/378 (20%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V V+G+GPAG A+ + V + +R+ GL+ G+ PD K ++++
Sbjct: 125 KVAVIGAGPAGLAAADDL--SRAGHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLE 181
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+++ F NV +G ++L EL + Y V LA GA R L IPGED GV A +F+
Sbjct: 182 LLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFL 241
Query: 141 WWYNGHPDGKNLSPDLKST--DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTAL 198
N G V++G G+ A+D A LR
Sbjct: 242 TRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALR------------------ 283
Query: 199 EGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQ 258
LG K+ V ++E
Sbjct: 284 -----------------------------LGAKS--VTCFYR-----EDRDDETNEWPTW 307
Query: 259 RRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG- 317
E+ S G+ + + F +P +F NE G V+GV F +
Sbjct: 308 AAQLEVRS-----------AGEEGVERLPFVQPKAF-IGNEG-GRVTGVKFGRVEPGEYV 354
Query: 318 -GPGKQYAVG-TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375
G G++ VG G + V+ +IG++ +GL + + RGR+ + +
Sbjct: 355 DGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK--RGRIKVDENLQ 412
Query: 376 SSQVENGLYVCGWLKRGP 393
+ + G++ G RG
Sbjct: 413 QTSIP-GVFAGGDAVRGA 429
|
Length = 457 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 8e-16
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V V+G+GPAG A + KA V + + L P G+V G+ P+ K ++ +
Sbjct: 135 KVAVIGAGPAGLACASELAKAGHS--VTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIK 191
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF- 139
++ +F N +G + +L EL Y V + GA + + IPGE+L GV+SA +F
Sbjct: 192 TLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFL 251
Query: 140 --VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+ +P + + + V++G GN A+D AR LR
Sbjct: 252 TRANLMKAYEFPHADTP-VYAGKSVVVIGGGNTAVDSARTALR 293
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V VVGSGPAG A++ +A V + +R GL+ G+ P+ K ++++
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHT--VTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRID 201
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
++ E F N +G +S EL++ + VVLA GA R L IPG +L G+H A EF+
Sbjct: 202 LLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFL 261
Query: 141 WWYNGHPDGKNLS-PDLKSTD--TAVILGQGNVALDVARILLR 180
GK+ V++G G+ D LR
Sbjct: 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLR 304
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 3e-15
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
+V VVGSGPAG A++ +A H+ V + +R GL+R G+ PD K VI++
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGGLLRYGI-PDFKLEKEVIDRRI 200
Query: 80 RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF 139
+++ E F NV +G ++ EL Y V L GA R LGIPG DL GVH A +F
Sbjct: 201 ELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDF 260
Query: 140 VWWYNGHPDGKNLSPDLKSTDTA-----VILGQGNVALDVARILLR 180
+ G P + +A V++G G+ +D +R
Sbjct: 261 LIQNTRRVLGDETEPFI----SAKGKHVVVIGGGDTGMDCVGTAIR 302
|
Length = 471 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 68/245 (27%), Positives = 96/245 (39%), Gaps = 62/245 (25%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTL--KAHQEAQVDIIDRLPTPFGL-------------- 59
+V ++G+GPAG A L ++ V + D+LP P GL
Sbjct: 15 PPTGKKVAIIGAGPAGL-AAAGYLACLGYE---VHVYDKLPEPGGLMLFGIPEFRIPIER 70
Query: 60 VRSGV-------APDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVV 112
VR GV H TK+ + + E F + VSL EL + Y V+
Sbjct: 71 VREGVKELEEAGVVFHTRTKVCCG--EPLHEEEGDEFVERI-----VSLEELVKKYDAVL 123
Query: 113 LAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA----VILGQG 168
+A G R LGIPGEDL GV+SA E+++ G P K V++G G
Sbjct: 124 IATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLG--YLPWEKVPPVEGKKVVVVGAG 181
Query: 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI- 227
A+D A E L G+ KVYL RR +A E+ +
Sbjct: 182 LTAVDAA-------LE-----------AVLLGA--EKVYLAYRRTINEAPAGKYEIERLI 221
Query: 228 -LGIK 231
G++
Sbjct: 222 ARGVE 226
|
Length = 352 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 21 RVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPDH--PETKIVINQ 77
+V ++G+GPAG A L K H V I D G++R G+ P PE+ VI+
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGGMMRYGI-PRFRLPES--VIDA 248
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
++ F N G ++L EL++ + V+LA GA+ +GIPGE+L GV S
Sbjct: 249 DIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGI 308
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+F+ G L P K V++G GN A+D AR LR
Sbjct: 309 DFLRNVA---LGTALHPGKK----VVVIGGGNTAIDAARTALR 344
|
Length = 652 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 38/174 (21%)
Query: 21 RVCVVGSGPAGFYTAEK-TLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
RV V+G GPAG A H V I + P G++R G+ P + +
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGGMMRYGI-PAY--------RLP 186
Query: 80 R-VVQHE-----------RCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
R V+ E R V +G ++L +L + V +A GA+ + L IPG
Sbjct: 187 REVLDAEIQRILDLGVEVRL----GVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPG 242
Query: 128 EDLIGVHSAREFVWWYN-GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
ED GV A +F+ G P V++G GN A+D AR R
Sbjct: 243 EDAAGVLDAVDFLRAVGEGEPP--------FLGKRVVVIGGGNTAMDAARTARR 288
|
Length = 564 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 89/365 (24%), Positives = 134/365 (36%), Gaps = 93/365 (25%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
RV V+G+GPAG A+ +A QV + DR P GL+ G+ P K V+++
Sbjct: 143 RVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRRE 199
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ F N +G +SL +L + Y V L G G+PGED GV A F+
Sbjct: 200 IFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFL 259
Query: 141 WWYNGHPDGKNLSPDLKSTDTA----VILGQGNVALDVARILLRPTEELATTDIASYAWT 196
G SP+ D V+LG G+ A+D R +R
Sbjct: 260 IANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIR---------------- 303
Query: 197 ALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256
V RR DE M SR
Sbjct: 304 ----LGAASVTCAYRR-----------------------------------DEANMPGSR 324
Query: 257 IQRRVYELLSKAAASASSQPMLGQRE--LHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314
+ A+A RE + F+F +P +E +E G V+GV +TAL
Sbjct: 325 ----------REVANA--------REEGVEFLFNVQPVY-IECDE-DGRVTGVGLVRTAL 364
Query: 315 KGGGP-GKQYAV---GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370
G++ V G+ EF L +V+ + G++ + +P+ GI + GR++
Sbjct: 365 GEPDADGRRRPVPVAGS-EFV-LPADVVIMAFGFQP---HAMPWLAGHGITLDSWGRIIT 419
Query: 371 NISGD 375
Sbjct: 420 GDVSY 424
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH--PETKIV 74
+V V+GSGPAG T L A V I + L P G++ G+ P+ P+ +V
Sbjct: 138 KKGKKVAVIGSGPAGL-TCAGDL-AKMGYDVTIFEALHEPGGVLVYGI-PEFRLPKETVV 194
Query: 75 INQFSRVVQHERCSFFGNVTLGSSVSLSELRQ--LYHVVVLAYGAESDRALGIPGEDLIG 132
+ + + NV +G +V++ EL + + V + GA + +GIPGE+L G
Sbjct: 195 KKEIENIKKLG-VKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNG 253
Query: 133 VHSAREFVWWYNGHPDGKNLSPD----LKSTDTAVILGQGNVALDVARILLR 180
V SA EF+ N K P+ +K ++G GNVA+D AR LR
Sbjct: 254 VFSANEFLTRVN---LMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR 302
|
Length = 464 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V +VGSGPAG A A +V + + L P G++R G+ P ++ +
Sbjct: 285 KVAIVGSGPAGLSAA--YFLATMGYEVTVYESLSKPGGVMRYGI----PSYRLPDEALDK 338
Query: 81 ---VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA- 136
++ N +G + L ELR+ + V L+ G R+ IPG D V A
Sbjct: 339 DIAFIEALGVKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL 398
Query: 137 ---REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
RE + G +G P K + V++G GNVA+D+AR + R
Sbjct: 399 PLLREIRDYLRG--EG----PKPKIPRSLVVIGGGNVAMDIARSMAR 439
|
Length = 604 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 7e-11
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V V+G+GPAG A+ + A QVD+ DR P G++ G+ P + K V++Q
Sbjct: 312 KVAVIGAGPAGLGCAD--ILARAGVQVDVFDRHPEIGGMLTFGIPPFKLD-KTVLSQRRE 368
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ F N +G ++ S+L Y V + G +P ED GV A F+
Sbjct: 369 IFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFL 428
Query: 141 WWYNGHPDGKNLSPDLKSTDT----AVILGQGNVALDVARILLR 180
+ G S + TD V+LG G+ +D R +R
Sbjct: 429 TAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIR 472
|
Length = 639 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 47/234 (20%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
N +V V+GSGPAG A K + V + + L G+++ G+ PE ++
Sbjct: 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYD--VTVFEALHEIGGVLKYGI----PEFRLP-- 480
Query: 77 QFSRVVQHE-------RCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGE 128
++V E F +V +G ++++ EL + + + +A GA + IPGE
Sbjct: 481 --KKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGE 538
Query: 129 DLIGVHSAREFVWWYNGHPDGKNLSPD----LKSTDTAVILGQGNVALDVARILLRPTEE 184
+ GV S+ E++ N SPD +K ++G GN A+D AR R E
Sbjct: 539 NSNGVMSSNEYLTRVNLM---DAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE 595
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL--GIKNLYVH 236
+V +V RR + +E++ GI+ L +H
Sbjct: 596 --------------------RVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLH 629
|
Length = 752 |
| >gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 7e-11
Identities = 87/370 (23%), Positives = 142/370 (38%), Gaps = 96/370 (25%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V + GSGPAG A +K V + + L G+++ G+ I+ + R
Sbjct: 432 KVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQR 489
Query: 81 VVQHERCSFFGNVTLGSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE 138
+V N +G + ++ +L + + V L GA + LGIPGE V+SA E
Sbjct: 490 LVD-IGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANE 548
Query: 139 FVWWYNGHPDGKNLSPDLKST----DTAVILGQGNVALDVARILLRPTEELATTDIASYA 194
F+ N G + P L + + V++G GN A+D R+ R
Sbjct: 549 FLTRVNLM--GGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKR-------------- 592
Query: 195 WTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254
L ++R VY RR +A +E+R H +E+
Sbjct: 593 ---LGAPTVRCVY---RRSEAEAPARIEEIR----------HAKEEG------------- 623
Query: 255 SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314
+ F F P E G V G+ E+ L
Sbjct: 624 ----------------------------IDFFFLHSPVEIYVDAE--GSVRGMKVEEMEL 653
Query: 315 KGGGP---GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371
G P G++ + TGEF+DL+C V+ ++G K+ P+ + G+ N G N
Sbjct: 654 --GEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT---QSTPGLALNKWG----N 704
Query: 372 ISGDSSQVEN 381
I+ D ++E+
Sbjct: 705 IAADDGKLES 714
|
Length = 1006 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 92/404 (22%), Positives = 147/404 (36%), Gaps = 131/404 (32%)
Query: 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
A + +V V+G+GPAG A +A V + +R G+V++
Sbjct: 534 AGIGSRKKVAVIGAGPAGLAAAYFLARAGHP--VTVFEREENAGGVVKN----------- 580
Query: 74 VINQF---SRVVQH--ERCSFFG-NVTLGSSVSLS---ELRQLYHVVVLAYGAESDRALG 124
+I QF + ++QH E G G S L+ + Y VV+A GA+ + L
Sbjct: 581 IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGADKNGGLK 640
Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
+ G + V A F+ Y L + V++G GN A+D AR
Sbjct: 641 LEGGNQ-NVIKALPFLEEYKNKGTALKLGKHV------VVVGGGNTAMDAAR-------- 685
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
AL + KV +V RR T +E+
Sbjct: 686 -----------AALRVPGVEKVTVVYRR-------TKQEM-------------------- 707
Query: 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304
P EE E L + F P+SF + G +
Sbjct: 708 -PAWREE---------YEEALEDG--------------VEFKELLNPESF----DADGTL 739
Query: 305 SGVHFEKTALKGGGP---GKQYAVGTGEFEDLDCGMVLKSIG-------YKSVPVNGLPF 354
+ L G P G++ V TGE L+ V+ +IG K+ NG+P
Sbjct: 740 T---CRVMKL--GEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA---NGIPL 791
Query: 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398
D +G + + +G++S + N +Y+ G ++RGP+ I+A
Sbjct: 792 DK--------KGWPVVDANGETS-LTN-VYMIGDVQRGPSTIVA 825
|
Length = 1019 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 85/398 (21%), Positives = 136/398 (34%), Gaps = 119/398 (29%)
Query: 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
S+ +V V+G+GPAG A V + ++ P G+V K
Sbjct: 532 QGKSSAHKVAVIGAGPAGLSAG--YFLARAGHPVTVFEKKEKPGGVV-----------KN 578
Query: 74 VINQF---SRVVQH--ERCSFFG-NVTLGSS--VSLSEL-RQLYHVVVLAYGAESDRALG 124
+I +F + +Q E F G G S ++++EL Q Y V+LA GA L
Sbjct: 579 IIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLR 638
Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
+ G V + EF+ + P V++G GN A+D AR
Sbjct: 639 LEG-GGERVLKSLEFLRAFKEGP------TINPLGKHVVVVGGGNTAMDAAR-------- 683
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
AL + KV +V RR + +EL E L + K
Sbjct: 684 -----------AALRVPGVEKVTVVYRRTKRYMPASREELEEAL---------EDGVDFK 723
Query: 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304
E ++ + V +L +PD+
Sbjct: 724 ELLSPESFEDGTLTCEVMKL------------------------GEPDA----------- 748
Query: 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS----VPVNGLPFDNHKGI 360
G++ VGTGE DL V+ ++G + + NG+P D +
Sbjct: 749 --------------SGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEY--- 791
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398
G + N + + + N ++V G RGP I+
Sbjct: 792 -----GWPVVNQATGETNITN-VFVIGDANRGPATIVE 823
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRV 81
+ VVGSGP+G A L A + V + + G++R G+ PE ++ V
Sbjct: 309 IAVVGSGPSGLINA--YLLAVEGFPVTVFEAFHDLGGVLRYGI----PEFRLPNQLIDDV 362
Query: 82 VQHERC---SFFGNVTLGSSVSLSELRQL-YHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
V+ + F N +G + +L +L+ + + + GA + +PGE L+GV SA
Sbjct: 363 VEKIKLLGGRFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSAN 422
Query: 138 EFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
EF+ N D + P++K + VI G GN A+D AR R
Sbjct: 423 EFLTRVNLMRGLDDDYETPLPEVKGKEVFVI-GGGNTAMDAARTAKR 468
|
Length = 944 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
RV ++G+GPAG A+ + A V + DR P GL+ G+ P K ++ +
Sbjct: 329 RVAIIGAGPAGLACAD--VLARNGVAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRRE 385
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ F N +G +SL L + Y V + G G+P ED GV+ A F+
Sbjct: 386 IFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFL 445
Query: 141 WWYNGHPDGKNLSPDLKSTDTA----VILGQGNVALDVARILLR 180
G P+ +TA V+LG G+ A+D R LR
Sbjct: 446 IANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALR 489
|
Length = 654 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 43/183 (23%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----------LPTPFGL----------V 60
V ++G GPAG A L A +V +I+R LP L
Sbjct: 1 DVVIIGGGPAG-LAAAIRL-ARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIG 58
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
+ + E + + + VV G T+ + Y +++A GA
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVD----IDRGEKTVVLKDVETGREITYDKLIIATGA-RP 113
Query: 121 RALGIPGEDLI---GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
R GIPG ++ GV + E + K + V++G G + L++A
Sbjct: 114 RIPGIPGVEVATLRGVIDSDEIL---ELLELPKRV----------VVVGGGYIGLELAAA 160
Query: 178 LLR 180
L +
Sbjct: 161 LAK 163
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
F + F N G V+GV +T L G G L +VL ++G+
Sbjct: 346 REFNVQTKEFEGEN---GKVTGVKVVRTELGEGDFEPV----EGSEFVLPADLVLLAMGF 398
Query: 345 KSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP 393
P GL G+ + RGRV + + ++ G ++RG
Sbjct: 399 TG-PEAGL-LAQF-GVELDERGRVAAPDNAYQTSNP-KVFAAGDMRRGQ 443
|
Length = 471 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 483 | |||
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 100.0 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 100.0 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 100.0 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 100.0 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.98 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.98 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.97 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.97 | |
| PLN02507 | 499 | glutathione reductase | 99.97 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.97 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.97 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.97 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| PLN02546 | 558 | glutathione reductase | 99.97 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.97 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.97 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.97 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.97 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.97 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.97 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.97 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.97 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.97 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.97 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.97 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.97 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.97 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.96 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.96 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.96 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.96 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.95 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.95 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.95 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.94 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.94 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.94 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.93 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.93 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.92 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.92 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.92 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.89 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.88 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.78 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.77 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.76 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.73 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.7 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.65 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.57 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.56 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.53 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.48 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.39 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.37 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.29 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.28 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.13 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.9 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.81 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.79 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.74 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.66 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.58 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.57 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.51 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.49 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.44 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.43 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.42 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.41 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.41 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.39 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.34 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.32 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.3 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.27 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.26 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.2 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.2 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.17 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.17 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.13 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.11 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.11 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.09 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.06 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.04 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.04 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.03 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.03 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.02 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.0 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.99 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 97.99 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.97 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.96 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.95 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 97.94 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.94 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 97.94 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.93 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.93 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.92 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.91 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.91 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.91 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.9 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.89 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 97.88 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.87 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.85 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.84 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 97.84 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.83 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.83 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 97.82 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.82 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.82 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 97.81 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.78 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.78 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.78 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.77 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.77 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.76 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.75 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.75 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.74 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 97.73 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.73 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.72 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.72 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.71 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.71 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.7 | |
| PLN02507 | 499 | glutathione reductase | 97.7 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.7 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 97.69 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.69 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.69 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.69 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.67 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.66 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.65 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.64 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.64 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.63 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.63 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.63 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.63 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.62 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.62 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.62 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 97.62 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.6 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.59 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.59 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.58 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.58 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.58 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.58 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.58 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.57 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.56 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.56 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.56 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.55 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.54 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.53 | |
| PLN02546 | 558 | glutathione reductase | 97.53 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.53 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.53 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.52 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.51 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.51 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.5 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.49 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.49 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.49 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.48 | |
| PLN02568 | 539 | polyamine oxidase | 97.48 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.47 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.47 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.46 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.45 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 97.45 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.45 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.44 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.43 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.42 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.42 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.42 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.42 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.41 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.4 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.39 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.38 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.36 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.34 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.33 | |
| PLN02676 | 487 | polyamine oxidase | 97.33 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 97.33 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.32 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.32 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.32 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.32 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.31 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.31 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.29 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.29 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.29 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.27 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 97.27 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.26 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.26 | |
| PLN02612 | 567 | phytoene desaturase | 97.25 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.24 | |
| PLN02985 | 514 | squalene monooxygenase | 97.24 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.23 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.22 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.21 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.21 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.18 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.18 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.18 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.16 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.16 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 97.15 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 97.14 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.12 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.12 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.12 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.09 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.09 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.08 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 97.07 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.05 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 97.03 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.02 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 97.02 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.01 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.0 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 96.97 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 96.97 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 96.96 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.96 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.95 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 96.92 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 96.91 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.9 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.9 | |
| PLN03000 | 881 | amine oxidase | 96.89 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 96.89 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.89 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 96.88 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 96.88 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.87 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 96.87 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 96.86 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.86 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 96.86 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 96.85 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.85 | |
| PLN02976 | 1713 | amine oxidase | 96.84 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.84 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.83 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 96.81 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 96.8 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.8 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.79 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 96.79 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.78 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 96.78 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 96.76 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.74 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.73 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 96.73 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.69 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 96.69 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 96.69 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 96.69 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.68 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.68 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.67 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.66 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.65 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.65 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.65 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 96.64 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 96.63 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.62 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 96.61 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.61 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 96.6 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.6 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.6 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 96.56 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.56 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.54 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 96.52 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.52 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.51 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.49 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 96.49 | |
| PLN02815 | 594 | L-aspartate oxidase | 96.44 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.44 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.41 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 96.4 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 96.39 | |
| PLN02463 | 447 | lycopene beta cyclase | 96.38 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 96.36 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 96.36 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.35 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 96.32 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 96.32 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 96.31 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.3 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 96.28 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.27 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 96.27 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 96.26 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 96.25 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.25 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.25 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.24 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.22 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 96.2 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 96.16 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 96.14 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 96.12 | |
| PRK05868 | 372 | hypothetical protein; Validated | 96.1 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 96.09 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.09 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 96.09 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.06 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 96.06 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.98 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 95.94 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 95.94 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 95.93 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.93 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 95.87 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 95.86 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 95.86 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 95.85 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 95.85 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 95.84 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 95.84 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 95.83 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 95.81 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 95.81 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 95.81 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.79 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 95.78 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.78 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 95.76 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 95.71 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 95.71 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 95.61 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 95.59 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 95.59 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 95.58 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 95.56 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 95.55 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.54 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 95.52 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.51 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 95.49 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 95.49 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 95.46 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.43 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 95.43 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 95.42 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 95.39 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 95.39 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.38 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 95.36 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 95.36 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 95.33 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 95.3 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 95.19 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.17 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 95.17 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 95.16 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 95.16 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 95.16 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.15 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 95.12 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 95.1 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 95.1 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 95.09 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 95.05 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 94.99 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 94.94 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 94.92 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 94.91 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.88 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.87 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 94.87 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 94.86 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 94.85 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 94.84 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 94.83 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 94.81 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 94.81 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 94.79 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 94.74 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.7 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 94.63 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 94.62 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 94.61 | |
| PLN02785 | 587 | Protein HOTHEAD | 94.59 | |
| PLN02985 | 514 | squalene monooxygenase | 94.59 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 94.58 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.5 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 94.45 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 94.4 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.39 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 94.36 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 94.31 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.23 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 94.2 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 94.1 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 94.07 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.03 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 94.02 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 93.94 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 93.83 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 93.8 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.79 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 93.75 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 93.73 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 93.66 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 93.47 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.43 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.43 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 93.41 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.25 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 93.17 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 93.08 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 93.02 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 92.98 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 92.93 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 92.85 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 92.77 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 92.69 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.65 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 92.62 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 92.56 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 92.56 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.52 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 92.46 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 92.46 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 92.45 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 92.4 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 92.38 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 92.34 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 92.33 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 92.28 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 92.04 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 91.79 |
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-82 Score=592.37 Aligned_cols=444 Identities=53% Similarity=0.856 Sum_probs=399.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
++.++|+|||+||||+|+|..|.++.++++|+|+|+.|.|+|+++||++|+|++.+++.+.|.+.+++.++.|+.|+.+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG 97 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG 97 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec
Confidence 34559999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
+++++.+++..||+||||+|+..++.++|||+++.+|+++++|+.|||++|++..+.+|+ .+++|+|||+||+++|+|+
T Consensus 98 ~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dl-s~~~vvIvG~GNVAlDvAR 176 (468)
T KOG1800|consen 98 RDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDL-SGRKVVIVGNGNVALDVAR 176 (468)
T ss_pred ccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCccc-ccceEEEEccCchhhhhhh
Confidence 999999999999999999999889999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHhcCCcccc-ccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 177 ILLRPTEELA-TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 177 ~L~~~~~~l~-~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
.|..+...|. .|||+..+|..|+.+.+++|+|++||++.+++||++||||++++|+++..+++.++.............
T Consensus 177 iLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~ 256 (468)
T KOG1800|consen 177 ILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQH 256 (468)
T ss_pred hhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCccccccc
Confidence 9999888777 999999999999999999999999999999999999999999999999999988776544444444446
Q ss_pred HHHHHHHHHHHHHHHhc---CCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEE
Q 011535 256 RIQRRVYELLSKAAASA---SSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFED 332 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~---~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~ 332 (483)
|.++|+.+.+.+.+... ........+.+.++|...|.+|. . +++.+.++.+..+.+.. . +.+++|+.++
T Consensus 257 RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~--~-~~~~v~~~~~~~t~l~~----~-~~~~tg~~e~ 328 (468)
T KOG1800|consen 257 RPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAIL--P-GADGVSGVRFQVTILEG----T-QAVPTGAFET 328 (468)
T ss_pred CchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhc--c-CcccccceEEEeeeehh----h-cccccCceEe
Confidence 89999999999887642 12334556789999999999998 3 34458888888877652 1 2456888899
Q ss_pred EecCeEEEeeecCCCCCC-CCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 333 LDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~-~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
++|+++|.++||+..+++ ++||+...|+..|.+|++.+.. ..|+||++|||++||.|+++++|++|..+|+.|
T Consensus 329 ~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~------~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I 402 (468)
T KOG1800|consen 329 LPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG------CSPGLYASGWVKHGPTGVIATTMQDAFEVADTI 402 (468)
T ss_pred eccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec------cCCceEEEeeeccCCcceeeehhhhHHHHHHHH
Confidence 999999999999998877 8999999999999999998432 459999999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhh
Q 011535 412 SEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482 (483)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~ 482 (483)
.+++..+-+.. ...++..++..+++++++|.||++||+.|+.+|+..||+||||+++||||+.+
T Consensus 403 ~qD~~~~~~~s-------s~~~l~~~l~~~~v~~v~w~dWe~I~~~E~~~Gk~~~k~reKf~t~Eeml~~~ 466 (468)
T KOG1800|consen 403 VQDLKIQFLDS-------SSAGLEALLESRGVRVVSWSDWEKIDAKEVARGKGTGKPREKFVTFEEMLRLL 466 (468)
T ss_pred HHHHHHhhccc-------hHHHHHHhhhccCCceecchhHHHhhHHHHhhccccCCchHhcCCHHHHHHHh
Confidence 99998553333 35789999999999999999999999999999999999999999999999875
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-76 Score=603.74 Aligned_cols=465 Identities=73% Similarity=1.161 Sum_probs=404.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..+++|+|||||||||+||..|+++.++++|+|||+.+.+||+++||++|+|+..+++...+.+++...+++|+.|+.++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 35689999999999999999999733349999999999999999999999999999999999998888899999999999
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
.+++++++...||+||||||+..++.++|||.++++|+++.+|+.||++++++......+..+++|+|||+|++|+|+|+
T Consensus 104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar 183 (491)
T PLN02852 104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCAR 183 (491)
T ss_pred ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHH
Confidence 99999888778999999999966688999999999999999999999999877654444446899999999999999999
Q ss_pred HHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccH
Q 011535 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (483)
Q Consensus 177 ~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
.|.+.+++|..|||++++++.|+.+++++|+|++||++.+++||++|+|+|.+++++++.+++.++..++........++
T Consensus 184 ~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 263 (491)
T PLN02852 184 ILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASR 263 (491)
T ss_pred HHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999888766566555566788
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC-CCceeeccCCceEEEec
Q 011535 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG-PGKQYAVGTGEFEDLDC 335 (483)
Q Consensus 257 ~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~-~g~~~~~~~g~~~~i~~ 335 (483)
.++|..++|.+++...........++|.|+|..+|++|++..+.+++|.++++..+++..+. +|+..++++|+.++++|
T Consensus 264 ~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~ 343 (491)
T PLN02852 264 PKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPC 343 (491)
T ss_pred hhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEEC
Confidence 99999999998753210000124589999999999999831112378999999999987653 56666677888889999
Q ss_pred CeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHH
Q 011535 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 336 D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l 415 (483)
|+||.|+||++.++.+++|+...++..|.+|+|.++.. +.|+.|||||+|||++||.+++++++.+|..++++|.+++
T Consensus 344 D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~--~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 344 GLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSAS--GADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCC--CccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 99999999997666677888878888999999998865 6689999999999999999999999999999999999999
Q ss_pred hcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 416 EQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
..+.+..+.....++...+..+|..+++.+++|.||++||++|+.+|+..||+|+||+++++||+++.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~v~~~~W~~id~~E~~~g~~~g~~r~K~~~~~~ml~~~~ 489 (491)
T PLN02852 422 EQGRLRGVASPPKPGRDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITSIEEMLKAAN 489 (491)
T ss_pred HcCcccCcccCCCCcHHHHHHHHHHcCCCeeCHHHHHHHHHHHHHhccccCCCccccCCHHHHHHHhc
Confidence 87655432111234667899999999999999999999999999999999999999999999999873
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-73 Score=568.80 Aligned_cols=439 Identities=26% Similarity=0.493 Sum_probs=369.0
Q ss_pred hccCCCCCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEE
Q 011535 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 12 ~~~~~~~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
+......+++|+|||||||||+||.+|++ .+ ++|+|||+.+.+||+++||++|+|+..+.+...+...+...+++|+
T Consensus 32 ~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~ 109 (506)
T PTZ00188 32 FFTNEAKPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFF 109 (506)
T ss_pred cCCCCCCCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEE
Confidence 33444567899999999999999998764 56 9999999999999999999999999999999999988888899999
Q ss_pred eCeEEceEEEecceeeccCEEEEccCCCCCCCCCCC------------CCC----CCCeeecceeeeeecCCCCCC---C
Q 011535 91 GNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIP------------GED----LIGVHSAREFVWWYNGHPDGK---N 151 (483)
Q Consensus 91 ~~~~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ip------------g~~----~~~v~~a~~~~~~~~~~~~~~---~ 151 (483)
.|+.++.+++.+++...||+||+|||+. ++.+| |++ +.|+|++.+|+.|||++|++. .
T Consensus 110 gnv~VG~Dvt~eeL~~~YDAVIlAtGA~---~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~ 186 (506)
T PTZ00188 110 GNVHVGVDLKMEELRNHYNCVIFCCGAS---EVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKA 186 (506)
T ss_pred eeeEecCccCHHHHHhcCCEEEEEcCCC---CCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccc
Confidence 9999999999988888999999999995 23566 665 679999999999999999753 1
Q ss_pred CC---CCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHh
Q 011535 152 LS---PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (483)
Q Consensus 152 ~~---~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~ 228 (483)
.. ..+...++++|||+||+|+|+|+.|++++++|..|||++++|+.|+.+++++|+|++||++.+++||++|||||.
T Consensus 187 ~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~ 266 (506)
T PTZ00188 187 VDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELI 266 (506)
T ss_pred ccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHh
Confidence 21 012245789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHH----HHHHHHHHHHhcCCCCC--CCcceEEEeecCCcceeecccCCCC
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR----VYELLSKAAASASSQPM--LGQRELHFVFFRKPDSFLESNERSG 302 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----~~~~l~~~~~~~~~~~~--~~~~~i~~~~~~~~~~v~~~~~~~g 302 (483)
+++++++.+++.++.+...........+.++| +.+.|.+++.... .+. ...+.|.++|..+|++|. + +++
T Consensus 267 ~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~-~~~~~~~~r~i~l~F~~sP~ei~--~-~~~ 342 (506)
T PTZ00188 267 SLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEK-NKEFYKTYKIIEFIFYFEIRQIR--P-IDG 342 (506)
T ss_pred cCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhcc-CccCCCCceEEEEEccCCceEEE--C-CCC
Confidence 99999999998876531111111223566665 6778877763100 111 246899999999999998 4 357
Q ss_pred ceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCc
Q 011535 303 HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENG 382 (483)
Q Consensus 303 ~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~ 382 (483)
+|.+++++.+++.+ +.. ..+|+.++++||+||.|+||+..+++++||+ .. ..|.+|++.. ..||
T Consensus 343 ~v~~v~~~~n~l~~---~~~--~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd-~~--~~n~~grv~~--------~~~g 406 (506)
T PTZ00188 343 AMKNVELELNKNVP---MSF--SSFKENKVLVTPLVIFATGFKKSNFAENLYN-QS--VQMFKEDIGQ--------HKFA 406 (506)
T ss_pred cEeEEEEEEeeccc---Ccc--CCCCeeEEEEcCEEEEcccccCCCCCCCCcc-cc--CCCCCCcccC--------CCCC
Confidence 99999999998864 221 4577888999999999999999999999998 43 5666788762 2599
Q ss_pred eeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHcc
Q 011535 383 LYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLG 462 (483)
Q Consensus 383 vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g 462 (483)
+|++||+++||.|+|++++.++..+++.|++++... .. .... .+..+|..+++.+++|.||++||++|+++|
T Consensus 407 ~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~d~~~~--~~-----~~~~-~~~~ll~~r~~~~v~~~~W~~Id~~E~~~G 478 (506)
T PTZ00188 407 IFKAGWFDKGPKGNIASQILNSKNSTHLVLNFLQKV--DI-----FFDN-DISSLLKEKQIPYVSFDDWTYLHQLEKQMG 478 (506)
T ss_pred cEEeeecCcCCCceeccCcccHHHHHHHHHHHHhhc--Cc-----ccch-hHHHHHHhcCCCeecHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998762 11 0122 688999999999999999999999999999
Q ss_pred ccCCCCcccccCHHHHHhhhC
Q 011535 463 SLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 463 ~~~~~~r~k~~~~~~~~~~~~ 483 (483)
+..||+|+||++++|||++++
T Consensus 479 ~~~gr~R~K~~~~~eml~~~~ 499 (506)
T PTZ00188 479 AQQNKIAQKFSQTGEVLRILK 499 (506)
T ss_pred cccCCCccccCCHHHHHHHHh
Confidence 999999999999999999874
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=369.13 Aligned_cols=320 Identities=23% Similarity=0.341 Sum_probs=255.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||+||..|++.| ++|+|||+.+.+||+++||+ |++..++++.....+.++..|++|+.|+.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 45799999999999999999999999 99999999999999999998 9999999998888888888999999999999
Q ss_pred eEEEecceee-ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC-CC--CCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NL--SPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~-~~--~~~~~~~~~vvVIG~G~~g~ 172 (483)
++++++++.. .||+|+||||++.++.+++||.++++|+++.+|....+...... .. ......+++|+|||||++|+
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~ 460 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM 460 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence 9999988765 69999999999778999999999999999999876543211100 00 00112579999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|+.+.+ .++ +|++++|++... +|....+.
T Consensus 461 D~A~ta~R--------------------~Ga-~Vtlv~rr~~~~----------------------------mpa~~~e~ 491 (944)
T PRK12779 461 DAARTAKR--------------------LGG-NVTIVYRRTKSE----------------------------MPARVEEL 491 (944)
T ss_pred HHHHHHHH--------------------cCC-EEEEEEecCccc----------------------------ccccHHHH
Confidence 99999986 566 699999986422 22211111
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccC-CCCceEEEEEeeeeee-CCCCCceeeccCCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALK-GGGPGKQYAVGTGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~-~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~ 330 (483)
...+ +.|++++++..++++. ++ +++++.++++...++. .+.+|+...+.+|+.
T Consensus 492 ---------~~a~--------------eeGV~~~~~~~p~~i~--~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e 546 (944)
T PRK12779 492 ---------HHAL--------------EEGINLAVLRAPREFI--GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEI 546 (944)
T ss_pred ---------HHHH--------------HCCCEEEeCcceEEEE--ecCCCCEEEEEEEEEEEeccccCcCceeeecCCce
Confidence 0111 5699999999999997 42 2346888887766553 344676555556777
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVAS 410 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~ 410 (483)
.+++||+||+|+|++|++.. .....++..+++|.|.+++.. ++|+.|+|||+|||++|+..++ .|+.+|+.+|.+
T Consensus 547 ~~i~aD~VI~AiG~~p~~~l---~~~~~gle~~~~G~I~vd~~~-~~Ts~pgVFAaGD~~~G~~~vv-~Ai~eGr~AA~~ 621 (944)
T PRK12779 547 ERVPVDLVIMALGNTANPIM---KDAEPGLKTNKWGTIEVEKGS-QRTSIKGVYSGGDAARGGSTAI-RAAGDGQAAAKE 621 (944)
T ss_pred EEEECCEEEEcCCcCCChhh---hhcccCceECCCCCEEECCCC-CccCCCCEEEEEcCCCChHHHH-HHHHHHHHHHHH
Confidence 78999999999999997621 223457888889999998654 7899999999999999887777 899999999999
Q ss_pred HHHHHhcC
Q 011535 411 ISEDLEQG 418 (483)
Q Consensus 411 I~~~l~~~ 418 (483)
|..+|.-.
T Consensus 622 I~~~L~~~ 629 (944)
T PRK12779 622 IVGEIPFT 629 (944)
T ss_pred HHHHhccc
Confidence 99998743
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=344.82 Aligned_cols=319 Identities=28% Similarity=0.407 Sum_probs=246.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHH-HHHHHHHHHhcCCeEEEeCeE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~-~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+.+.++|+|||||||||+||.+|++.+ ++|+|||+.+.+||++.|++ |.+..+++ +.....+.++..|++|+.++.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCCE
Confidence 456799999999999999999999999 99999999999999999988 76554444 666666777888999999998
Q ss_pred EceEEEecceee--ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCC-CCCCCCCCCeEEEEcCCchH
Q 011535 95 LGSSVSLSELRQ--LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 95 v~~~~~~~~~~~--~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~vvVIG~G~~g 171 (483)
++.+++++++.. .||+||||||++.++.+++||.++++|+++.+|....+....+.. .......+++|+|||+|++|
T Consensus 214 v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va 293 (464)
T PRK12831 214 VGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA 293 (464)
T ss_pred ECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence 877776665432 499999999996688899999999999999888755432211110 11112367999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|+.+.+ .+.+ |++++|++... ++....+
T Consensus 294 ~d~A~~l~r--------------------~Ga~-Vtlv~r~~~~~----------------------------m~a~~~e 324 (464)
T PRK12831 294 MDAARTALR--------------------LGAE-VHIVYRRSEEE----------------------------LPARVEE 324 (464)
T ss_pred HHHHHHHHH--------------------cCCE-EEEEeecCccc----------------------------CCCCHHH
Confidence 999999986 5655 99999986422 1211111
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeecc-CCc
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVG-TGE 329 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~-~g~ 329 (483)
. +.+. +.||++++...+.++. .+++|++.++++...++.. +.+|+..++. +++
T Consensus 325 ~----------~~a~-------------~eGV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~ 379 (464)
T PRK12831 325 V----------HHAK-------------EEGVIFDLLTNPVEIL--GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGS 379 (464)
T ss_pred H----------HHHH-------------HcCCEEEecccceEEE--ecCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence 0 1111 6799999999999997 4246789999887766542 2345433332 455
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
..+++||+||+|+|+.|+.. +... .|+..+++|++.+++.. ++|+.|+|||+|||..++..++ .|+.+|+.+|
T Consensus 380 ~~~i~~D~Vi~AiG~~p~~~----~~~~~~gl~~~~~G~i~vd~~~-~~Ts~pgVfAaGD~~~g~~~v~-~Ai~~G~~AA 453 (464)
T PRK12831 380 EFVLEVDTVIMSLGTSPNPL----ISSTTKGLKINKRGCIVADEET-GLTSKEGVFAGGDAVTGAATVI-LAMGAGKKAA 453 (464)
T ss_pred eEEEECCEEEECCCCCCChh----hhcccCCceECCCCcEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHHH
Confidence 56899999999999999762 3333 67888888999999865 7899999999999998888777 8999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.+|.++|.+
T Consensus 454 ~~I~~~L~~ 462 (464)
T PRK12831 454 KAIDEYLSK 462 (464)
T ss_pred HHHHHHhcC
Confidence 999999865
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=339.95 Aligned_cols=316 Identities=25% Similarity=0.359 Sum_probs=243.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+.++|+|||||||||++|..|++.+ ++|+|||+.+.+||.+.|++ |.+...+++.....+.+...+++|+.+..+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 346789999999999999999999998 99999999999999999987 766666777776667777789999999888
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCC--CCCCCCCCCCCeEEEEcCCchHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+.+++++++...||+||||||+..++.+++||.+.++|+++.++....+....+ .........+++|+|||+|++|+|
T Consensus 207 ~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 286 (449)
T TIGR01316 207 GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVD 286 (449)
T ss_pred CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHH
Confidence 777776655557999999999866888899999999999988876543322111 011111225789999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|+.+.+ .+.+ |++++|+..... +....
T Consensus 287 ~A~~l~~--------------------~G~~-Vtlv~~~~~~~~----------------------------~~~~~--- 314 (449)
T TIGR01316 287 SARTALR--------------------LGAE-VHCLYRRTREDM----------------------------TARVE--- 314 (449)
T ss_pred HHHHHHH--------------------cCCE-EEEEeecCcccC----------------------------CCCHH---
Confidence 9999986 5654 999999864321 11111
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeecc-CCceE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVG-TGEFE 331 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~-~g~~~ 331 (483)
..+.+. +.||+++++..++++. .++++++.+|++....+.. +.+|+..+.+ +++..
T Consensus 315 -------~~~~l~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~ 372 (449)
T TIGR01316 315 -------EIAHAE-------------EEGVKFHFLCQPVEII--GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAEC 372 (449)
T ss_pred -------HHHHHH-------------hCCCEEEeccCcEEEE--EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceE
Confidence 011221 6799999999999997 4246788888887654432 2245433222 45556
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+++||+||+|+|++|+. .+.+..++..+++|++.+|++ ++|+.|+|||+|||+.++..++ .|+.+|+.+|.+|
T Consensus 373 ~i~~D~Vi~AiG~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~Ts~~~VfA~GD~~~g~~~v~-~Ai~~G~~AA~~I 445 (449)
T TIGR01316 373 KLEADAVIVAIGNGSNP----IMAETTRLKTSERGTIVVDED--QRTSIPGVFAGGDIILGAATVI-RAMGQGKRAAKSI 445 (449)
T ss_pred EEECCEEEECCCCCCCc----hhhhccCcccCCCCeEEeCCC--CccCCCCEEEecCCCCCcHHHH-HHHHHHHHHHHHH
Confidence 89999999999999986 255666888888899999987 7899999999999998887776 8999999999999
Q ss_pred HHHH
Q 011535 412 SEDL 415 (483)
Q Consensus 412 ~~~l 415 (483)
.++|
T Consensus 446 ~~~L 449 (449)
T TIGR01316 446 NEYL 449 (449)
T ss_pred HhhC
Confidence 8875
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=364.32 Aligned_cols=321 Identities=26% Similarity=0.374 Sum_probs=255.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
+.++|+|||||||||+||..|++++ ++|+|||+.+.+||+++||+ |.+..++++.....+.+...|++|+.++.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 5689999999999999999999999 99999999999999999998 87777888888888888889999999998888
Q ss_pred EEEeccee--eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCC--CCCCCCCCCCCCeEEEEcCCchHHH
Q 011535 98 SVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPD--GKNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 98 ~~~~~~~~--~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+++++++. ..||+||||||++.++.++|||.++++|+++.+|....+.... +.........+++|+|||||++|+|
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D 585 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMD 585 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHH
Confidence 87776653 3699999999997688899999999999999988866553211 1001111236899999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|+.+.+ .|++.|++++|+.....+....|+
T Consensus 586 ~A~~a~r--------------------lGa~~Vtiv~rr~~~em~a~~~e~----------------------------- 616 (1006)
T PRK12775 586 CLRVAKR--------------------LGAPTVRCVYRRSEAEAPARIEEI----------------------------- 616 (1006)
T ss_pred HHHHHHH--------------------cCCCEEEEEeecCcccCCCCHHHH-----------------------------
Confidence 9998886 688889999998654322221111
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFED 332 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~ 332 (483)
+.+. +.||+++++..+.++. .+++|+|.++++..+.+. .+.+|+..+..+++..+
T Consensus 617 ---------~~a~-------------eeGI~~~~~~~p~~i~--~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 617 ---------RHAK-------------EEGIDFFFLHSPVEIY--VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred ---------HHHH-------------hCCCEEEecCCcEEEE--eCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 1111 6799999999999997 435789999998876654 23456655555666678
Q ss_pred EecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC----CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 333 LDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI----SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~----~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
++||+||+|+|++|+... +....++.++++|.+.+++ .. ++|++|+|||+||+++|+..++ .|+.+|+.+|
T Consensus 673 i~~D~Vi~AiG~~p~~~~---~~~~~gl~l~~~G~I~vd~~~v~~~-~~Ts~pgVFAaGDv~~G~~~vv-~Ai~~Gr~AA 747 (1006)
T PRK12775 673 LECDTVIYALGTKANPII---TQSTPGLALNKWGNIAADDGKLEST-QSTNLPGVFAGGDIVTGGATVI-LAMGAGRRAA 747 (1006)
T ss_pred EEcCEEEECCCcCCChhh---hhccCCcccCCCCcEEeCCCccccC-cCCCCCCEEEecCcCCCccHHH-HHHHHHHHHH
Confidence 999999999999998621 1222467778889998886 23 7899999999999999988777 8999999999
Q ss_pred HHHHHHHhcCc
Q 011535 409 ASISEDLEQGV 419 (483)
Q Consensus 409 ~~I~~~l~~~~ 419 (483)
.+|..+|.++.
T Consensus 748 ~~I~~~L~~~~ 758 (1006)
T PRK12775 748 RSIATYLRLGK 758 (1006)
T ss_pred HHHHHHHhcCC
Confidence 99999998753
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=352.23 Aligned_cols=320 Identities=25% Similarity=0.373 Sum_probs=249.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+.++|+|||||||||+||..|++++ ++|+|||+.+.+||+++||+ |.+..++++.....+.+...|++|+.++.+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 346789999999999999999999999 99999999999999999998 887777777776667777889999999999
Q ss_pred ceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCC-CCCCCCCCCeEEEEcCCchHHH
Q 011535 96 GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 96 ~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+++++++++. ..||+||||||++.++.+++||.+.++|+++.+|....+....+.. .......+++|+|||||++|+|
T Consensus 505 ~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 584 (752)
T PRK12778 505 GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMD 584 (752)
T ss_pred CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHH
Confidence 8888777764 3599999999996688899999999999999988765443222111 0111236799999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|+.+.+ .+.++|++++|++... +|....+.
T Consensus 585 ~A~~~~r--------------------~Ga~~Vtlv~r~~~~~----------------------------~~~~~~e~- 615 (752)
T PRK12778 585 SARTAKR--------------------LGAERVTIVYRRSEEE----------------------------MPARLEEV- 615 (752)
T ss_pred HHHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHH-
Confidence 9999986 6777899999986422 12111110
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeec-cCCceE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAV-GTGEFE 331 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~-~~g~~~ 331 (483)
+.+. +.||++++...+.++. .++++++.++++..+.+.. +.+|+...+ .+++..
T Consensus 616 ---------~~~~-------------~~GV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~ 671 (752)
T PRK12778 616 ---------KHAK-------------EEGIEFLTLHNPIEYL--ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTF 671 (752)
T ss_pred ---------HHHH-------------HcCCEEEecCcceEEE--ECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeE
Confidence 1111 6799999999999997 4346789888887665532 224543222 145556
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+++||+||+|+|++|+... +....++.++++|++.+|++ ++|+.|+|||+|||++++..++ .|+.+|+.+|.+|
T Consensus 672 ~i~~D~Vi~A~G~~p~~~l---~~~~~gl~~~~~G~i~vd~~--~~Ts~~gVfA~GD~~~g~~~vv-~Av~~G~~AA~~I 745 (752)
T PRK12778 672 TVDVDLVIVSVGVSPNPLV---PSSIPGLELNRKGTIVVDEE--MQSSIPGIYAGGDIVRGGATVI-LAMGDGKRAAAAI 745 (752)
T ss_pred EEECCEEEECcCCCCCccc---cccccCceECCCCCEEeCCC--CCCCCCCEEEeCCccCCcHHHH-HHHHHHHHHHHHH
Confidence 8999999999999998621 22234788888899999987 6899999999999998887777 8999999999999
Q ss_pred HHHHhc
Q 011535 412 SEDLEQ 417 (483)
Q Consensus 412 ~~~l~~ 417 (483)
.++|.+
T Consensus 746 ~~~L~~ 751 (752)
T PRK12778 746 DEYLSS 751 (752)
T ss_pred HHHhcc
Confidence 999864
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=324.11 Aligned_cols=317 Identities=28% Similarity=0.421 Sum_probs=242.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+...++|+||||||||+++|..|++.+ ++|+|||+.+.+||++.+++ |.+....++...+.+.+...+++|+.++.+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 456789999999999999999999999 99999999999999999988 776667778777778888889999999988
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+.++++++....||+||+|||+..++.+++||.+.++++++.++......... ...+..+++|+|||+|++|+|+|
T Consensus 214 ~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~----~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVA----DYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccc----cccCCCCCeEEEECCCHHHHHHH
Confidence 76666555556799999999996677788999988899988776654432110 01222578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
..|.+ .+.++|+++.|++.... +....+
T Consensus 290 ~~l~~--------------------~G~~~Vtlv~~~~~~~~----------------------------~~~~~~---- 317 (457)
T PRK11749 290 RTAKR--------------------LGAESVTIVYRRGREEM----------------------------PASEEE---- 317 (457)
T ss_pred HHHHH--------------------cCCCeEEEeeecCcccC----------------------------CCCHHH----
Confidence 99986 57779999999864321 111110
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+. +.||+++++..+.++. + +++.+.+|++....+.. +.+|+.....+++.++++
T Consensus 318 ------~~~~~-------------~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~ 375 (457)
T PRK11749 318 ------VEHAK-------------EEGVEFEWLAAPVEIL--G-DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLP 375 (457)
T ss_pred ------HHHHH-------------HCCCEEEecCCcEEEE--e-cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEE
Confidence 11221 6799999999999997 4 34555677776554432 224432211245667899
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
||+||+|+|++|+.. + +....++..+++|++.+++.. ++|+.|+|||+|||+.++..+. .|+.+|+.+|.+|.++
T Consensus 376 ~D~vi~a~G~~p~~~--l-~~~~~gl~~~~~g~i~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA~~I~~~ 450 (457)
T PRK11749 376 ADLVIKAIGQTPNPL--I-LSTTPGLELNRWGTIIADDET-GRTSLPGVFAGGDIVTGAATVV-WAVGDGKDAAEAIHEY 450 (457)
T ss_pred CCEEEECccCCCCch--h-hccccCccCCCCCCEEeCCCC-CccCCCCEEEeCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999851 1 223456778888999999843 7899999999999997776666 7999999999999999
Q ss_pred HhcC
Q 011535 415 LEQG 418 (483)
Q Consensus 415 l~~~ 418 (483)
|.+.
T Consensus 451 l~g~ 454 (457)
T PRK11749 451 LEGA 454 (457)
T ss_pred Hhcc
Confidence 9864
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=335.54 Aligned_cols=321 Identities=23% Similarity=0.345 Sum_probs=245.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||++|..|++.| ++|+|||+.+.+||++.|++ |.+...+++.....+.++..|++|+.++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 45789999999999999999999999 99999999999999999998 8777777887777777888899999999988
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeec----CCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++++.+....||+|++|||+..++.+++||.+.+|++++.+|..... +.............+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 777666655679999999999767778999999999998766542110 1111000011112578999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|..+.+ .++++|++++|++.... |....+
T Consensus 482 d~A~~a~r--------------------~ga~~Vt~i~~~~~~~~----------------------------~~~~~e- 512 (654)
T PRK12769 482 DCVRTALR--------------------HGASNVTCAYRRDEANM----------------------------PGSKKE- 512 (654)
T ss_pred HHHHHHHH--------------------cCCCeEEEeEecCCCCC----------------------------CCCHHH-
Confidence 99998776 67889999999864322 111111
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-CCCCceeecc-CCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG-GGPGKQYAVG-TGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~-~~~g~~~~~~-~g~~ 330 (483)
.+.+. +.||+++++..++++. .++++++.+|++..+.+.. +.+|+..+.. .|+.
T Consensus 513 ---------~~~~~-------------~~Gv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 513 ---------VKNAR-------------EEGANFEFNVQPVALE--LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred ---------HHHHH-------------HcCCeEEeccCcEEEE--ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 11121 6799999999999997 4246889889887655432 3345533222 4566
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC--CCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~--~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
.++++|+||+|+|+.|+.. .+.+..++.++++|.+.++... .++|+.|+|||+||+.+++..++ .|+.+|+.+|
T Consensus 569 ~~i~~D~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv-~Ai~~Gr~AA 644 (654)
T PRK12769 569 FVMPADAVIMAFGFNPHGM---PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVV-TAMAEGRHAA 644 (654)
T ss_pred EEEECCEEEECccCCCCcc---ccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHH-HHHHHHHHHH
Confidence 6899999999999999753 2456678888889999887521 16799999999999998887777 8999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.+|.++|..
T Consensus 645 ~~I~~~L~~ 653 (654)
T PRK12769 645 QGIIDWLGV 653 (654)
T ss_pred HHHHHHhCc
Confidence 999999864
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=332.29 Aligned_cols=315 Identities=25% Similarity=0.347 Sum_probs=240.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+++++ |.+..++++.....+.+...|++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 45689999999999999999999999 99999999999999999988 7777777777777777778899999998877
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
.++++++....||+||||||+..++.+++||.+.++++++.++........ ....+++|+|||+|++|+|+|.
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~-------~~~~gk~VvVIGgG~~a~e~A~ 340 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT-------ALHPGKKVVVIGGGNTAIDAAR 340 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCC-------cccCCCeEEEECCCHHHHHHHH
Confidence 666665555569999999999656678899999889988776654332110 1226899999999999999999
Q ss_pred HHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccH
Q 011535 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (483)
Q Consensus 177 ~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
.+.+ .+.++|++++|++.... |....+.
T Consensus 341 ~l~~--------------------~Ga~~Vtlv~r~~~~~m----------------------------pa~~~ei---- 368 (652)
T PRK12814 341 TALR--------------------LGAESVTILYRRTREEM----------------------------PANRAEI---- 368 (652)
T ss_pred HHHH--------------------cCCCeEEEeeecCcccC----------------------------CCCHHHH----
Confidence 9886 67789999999874322 2211111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeee-eCCCCCceeecc-CCceEEEe
Q 011535 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVG-TGEFEDLD 334 (483)
Q Consensus 257 ~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l-~~~~~g~~~~~~-~g~~~~i~ 334 (483)
.+.+ +.||+++++..+.++. . +++.+. ++...... ..+.+|+..++. +++..+++
T Consensus 369 -----~~a~--------------~eGV~i~~~~~~~~i~--~-~~~~~~-v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~ 425 (652)
T PRK12814 369 -----EEAL--------------AEGVSLRELAAPVSIE--R-SEGGLE-LTAIKMQQGEPDESGRRRPVPVEGSEFTLQ 425 (652)
T ss_pred -----HHHH--------------HcCCcEEeccCcEEEE--e-cCCeEE-EEEEEEEecccCCCCCCcceecCCceEEEE
Confidence 1111 5689999999999997 4 344432 22221111 112234433322 35556899
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+|.||+|+|+.|+. .+....|+..+.+|++.+|+.. ++|+.|+|||+||++.++..++ .|+.+|+.+|.+|.++
T Consensus 426 ~D~VI~AiG~~p~~----~ll~~~gl~~~~~G~I~vd~~~-~~Ts~pgVfA~GDv~~g~~~v~-~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 426 ADTVISAIGQQVDP----PIAEAAGIGTSRNGTVKVDPET-LQTSVAGVFAGGDCVTGADIAI-NAVEQGKRAAHAIDLF 499 (652)
T ss_pred CCEEEECCCCcCCc----ccccccCccccCCCcEeeCCCC-CcCCCCCEEEcCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999976 3456678888888999999755 8899999999999998887666 7999999999999999
Q ss_pred HhcCcCCC
Q 011535 415 LEQGVLAS 422 (483)
Q Consensus 415 l~~~~~~~ 422 (483)
|.+.++..
T Consensus 500 L~g~~~~~ 507 (652)
T PRK12814 500 LNGKPVTA 507 (652)
T ss_pred HcCCCCCC
Confidence 99876554
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=317.79 Aligned_cols=318 Identities=26% Similarity=0.381 Sum_probs=240.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||+||||+++|..|++.+ ++|+|||+.+.+||++++|+ |.+...+++.....+.+...|++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 36689999999999999999999998 99999999999999999997 7777777787777788888999999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeee----ecCCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW----YNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++.+++....||+||+|||+...+.+++||.++++|+++.+|... +.+.............+++++|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 6665555445799999999996666789999999999987665421 111111101111112578999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|..+.+ .+.++||+++|++.... +....+.
T Consensus 296 d~A~~a~~--------------------~Ga~~Vtvv~r~~~~~~----------------------------~~~~~e~ 327 (467)
T TIGR01318 296 DCVRTAIR--------------------LGAASVTCAYRRDEANM----------------------------PGSRREV 327 (467)
T ss_pred HHHHHHHH--------------------cCCCeEEEEEecCcccC----------------------------CCCHHHH
Confidence 99998775 67788999999875322 1111110
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeecc-CCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~-~g~~ 330 (483)
+.+. +.||+++++..+.++. .++++++.++++...... .+.+|+..+.. +++.
T Consensus 328 ----------~~~~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 382 (467)
T TIGR01318 328 ----------ANAR-------------EEGVEFLFNVQPVYIE--CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE 382 (467)
T ss_pred ----------HHHH-------------hcCCEEEecCCcEEEE--ECCCCeEEEEEEEEEEecccCCCCCccceecCCce
Confidence 1111 6799999999999997 424677888887654432 12244422221 4556
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec----CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN----ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEE 406 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~----~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~ 406 (483)
.+++||.||+|+|++|+.. .+....++..+++|++.++ .+ ++|+.|+|||+|||+.++..+. .|+.+|+.
T Consensus 383 ~~i~~D~Vi~a~G~~p~~~---~~~~~~gl~~~~~g~i~vd~~~~~~--~~T~~~gVfa~GD~~~~~~~~~-~Ai~~G~~ 456 (467)
T TIGR01318 383 FVLPADVVIMAFGFQPHAM---PWLAGHGITLDSWGRIITGDVSYLP--YQTTNPKIFAGGDAVRGADLVV-TAVAEGRQ 456 (467)
T ss_pred EEEECCEEEECCcCCCCcc---ccccccCccCCCCCCEEeCCccccC--ccCCCCCEEEECCcCCCccHHH-HHHHHHHH
Confidence 7899999999999999742 2455667888888999988 33 6789999999999988777666 79999999
Q ss_pred HHHHHHHHHh
Q 011535 407 TVASISEDLE 416 (483)
Q Consensus 407 ~a~~I~~~l~ 416 (483)
+|.+|.++|.
T Consensus 457 aA~~i~~~L~ 466 (467)
T TIGR01318 457 AAQGILDWLG 466 (467)
T ss_pred HHHHHHHHhc
Confidence 9999998874
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=334.82 Aligned_cols=304 Identities=26% Similarity=0.361 Sum_probs=234.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+||||||||++||..|++.| ++|+|||+.+.+||.+++++ |.+..+.++.....+.+...|++|+.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 46789999999999999999999999 99999999999999999876 888777777766667777789999999877
Q ss_pred eEEEecceee-ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 97 ~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+++++++.. .||+||||||++.+++++++|.+ .+++++.++...++... .....+++|+|||||++|+|+|
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~------~~~~~GKrVVVIGGGnVAmD~A 684 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG------TALKLGKHVVVVGGGNTAMDAA 684 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc------ccccCCCEEEEECCChHHHHHH
Confidence 455555544 49999999999767778889875 57887777665542211 1122579999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
+.+.+ ..++++|++++|+.... +|....+.
T Consensus 685 r~a~R-------------------lgGakeVTLVyRr~~~~----------------------------MPA~~eEl--- 714 (1019)
T PRK09853 685 RAALR-------------------VPGVEKVTVVYRRTKQE----------------------------MPAWREEY--- 714 (1019)
T ss_pred HHHHh-------------------cCCCceEEEEEccCccc----------------------------ccccHHHH---
Confidence 98875 23557999999986422 12211111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+ +.||++++...+.++. . ++++. .....+. .+.+|+...+.+++..+++
T Consensus 715 ------e~Al--------------eeGVe~~~~~~p~~I~--~--dG~l~---~~~~~lg~~d~~Gr~~~v~tg~~~~I~ 767 (1019)
T PRK09853 715 ------EEAL--------------EDGVEFKELLNPESFD--A--DGTLT---CRVMKLGEPDESGRRRPVETGETVTLE 767 (1019)
T ss_pred ------HHHH--------------HcCCEEEeCCceEEEE--c--CCcEE---EEEEEeecccCCCceEEeeCCCeEEEE
Confidence 1111 4689999999999996 3 55543 2222222 1234655555677778999
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
||+||+|+|++|+. .+.+..|+..+++|++.+++. ++|+.|+|||+|||+++|..++ .|+.+|+.+|.+|+..
T Consensus 768 aD~VIvAIG~~Pnt----elle~~GL~ld~~G~I~VDet--lqTs~pgVFAaGD~a~Gp~tvv-~Ai~qGr~AA~nI~~~ 840 (1019)
T PRK09853 768 ADTVITAIGEQVDT----ELLKANGIPLDKKGWPVVDAN--GETSLTNVYMIGDVQRGPSTIV-AAIADARRAADAILSR 840 (1019)
T ss_pred eCEEEECCCCcCCh----hHHHhcCccccCCCCEEeCCC--cccCCCCEEEEeccccCchHHH-HHHHHHHHHHHHHhhh
Confidence 99999999999976 355667888888899999876 7789999999999998888887 8999999999999987
Q ss_pred Hh
Q 011535 415 LE 416 (483)
Q Consensus 415 l~ 416 (483)
+.
T Consensus 841 ~~ 842 (1019)
T PRK09853 841 EG 842 (1019)
T ss_pred cC
Confidence 65
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=329.56 Aligned_cols=321 Identities=22% Similarity=0.338 Sum_probs=246.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||++|..|++.| ++|+|||+.+.+||+++||+ |.+...+++.....+.+...|++|+.++.++
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence 35799999999999999999999999 99999999999999999999 7676777777777778888999999999888
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeec----CCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++++.++...||+|++|||+..++.+++||.+.++++++.+|....+ +.......+.....+++|+|||+|++|+
T Consensus 385 ~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~ 464 (639)
T PRK12809 385 RDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTM 464 (639)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 777776666679999999999767778999999999998766653211 1111001111122579999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
|+|..+.+ .++++|++++|++.... |....+.
T Consensus 465 d~a~~~~~--------------------~Ga~~Vt~v~rr~~~~~----------------------------~~~~~e~ 496 (639)
T PRK12809 465 DCLRTSIR--------------------LNAASVTCAYRRDEVSM----------------------------PGSRKEV 496 (639)
T ss_pred HHHHHHHH--------------------cCCCeEEEeeecCcccC----------------------------CCCHHHH
Confidence 99988765 68889999999865432 2211111
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeecc-CCce
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~-~g~~ 330 (483)
... . +.||+++++..++++. .+++++|.++++..+.+. .+.+|+..+.. .|+.
T Consensus 497 ----------~~a----~---------~eGv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 497 ----------VNA----R---------EEGVEFQFNVQPQYIA--CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred ----------HHH----H---------HcCCeEEeccCCEEEE--ECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 001 1 6799999999999997 434678888887665542 23355533332 4566
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC--CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS--GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~--~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
.++++|+||+|+|++|+.. .+.+..++.++++|++.+++. ..++|+.|+|||+||+.+++..++ .|+.+|+.+|
T Consensus 552 ~~i~aD~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv-~Ai~~Gr~AA 627 (639)
T PRK12809 552 FELPADVLIMAFGFQAHAM---PWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVV-TAMAAGRQAA 627 (639)
T ss_pred EEEECCEEEECcCCCCCcc---ccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHH-HHHHHHHHHH
Confidence 7899999999999999652 245667888888999988752 116799999999999998887766 8999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.+|..+|.+
T Consensus 628 ~~i~~~l~~ 636 (639)
T PRK12809 628 RDMLTLFDT 636 (639)
T ss_pred HHHHHHHhh
Confidence 999999875
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=312.04 Aligned_cols=326 Identities=24% Similarity=0.308 Sum_probs=236.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+++++ |.+....++.....+.+...|++++.++.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 45689999999999999999999999 99999999999999999988 7776677777777777788899999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC-CCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
.+++..+....||+||+|||+..++.+++||.+.++|+++.+|....+...... ........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 655444444579999999999667888999999999998876653321110000 0000112578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
..+.+ .+.++|+++.+......... .....+....
T Consensus 298 ~~~~~--------------------~ga~~Vt~~~~~~~~~~~~~--------------------~~~~~~~~~~----- 332 (471)
T PRK12810 298 GTAIR--------------------QGAKSVTQRDIMPMPPSRRN--------------------KNNPWPYWPM----- 332 (471)
T ss_pred HHHHH--------------------cCCCeEEEccccCCCccccc--------------------cccCCcccch-----
Confidence 98775 57778885544321100000 0000000000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEec
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC 335 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~ 335 (483)
....+.+. +.||+++++..+.++. + ++++|.+|++....+. +|+... ..++..+++|
T Consensus 333 ---~~~~~~~~-------------~~GV~i~~~~~~~~i~--~-~~g~v~~V~~~~~~~~---~g~~~~-~~g~~~~i~~ 389 (471)
T PRK12810 333 ---KLEVSNAH-------------EEGVEREFNVQTKEFE--G-ENGKVTGVKVVRTELG---EGDFEP-VEGSEFVLPA 389 (471)
T ss_pred ---HHHHHHHH-------------HcCCeEEeccCceEEE--c-cCCEEEEEEEEEEEec---CCCccc-cCCceEEEEC
Confidence 00011111 6799999999999997 5 4788988888765442 121111 1355568999
Q ss_pred CeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec-CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN-ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 336 D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~-~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
|+||+|+|++|+.. .|.+..++..+++|++.++ ++ ++|+.|+|||+|||+.++..++ .|+.+|+.+|.+|.++
T Consensus 390 D~VI~A~G~~p~~~---~l~~~~gl~~~~~g~i~vd~~~--~~Ts~~gVfa~GD~~~g~~~~~-~Av~~G~~AA~~i~~~ 463 (471)
T PRK12810 390 DLVLLAMGFTGPEA---GLLAQFGVELDERGRVAAPDNA--YQTSNPKVFAAGDMRRGQSLVV-WAIAEGRQAARAIDAY 463 (471)
T ss_pred CEEEECcCcCCCch---hhccccCcccCCCCCEEeCCCc--ccCCCCCEEEccccCCCchhHH-HHHHHHHHHHHHHHHH
Confidence 99999999999752 2446667888888999987 45 7799999999999998776666 7999999999999999
Q ss_pred HhcCc
Q 011535 415 LEQGV 419 (483)
Q Consensus 415 l~~~~ 419 (483)
|.+..
T Consensus 464 L~g~~ 468 (471)
T PRK12810 464 LMGST 468 (471)
T ss_pred HhcCC
Confidence 98753
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=308.85 Aligned_cols=335 Identities=24% Similarity=0.299 Sum_probs=239.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+.+||++.|++ |.+...+++.....++++..|++++.++.++
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 217 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIG 217 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeC
Confidence 34589999999999999999999998 99999999999999999998 7766666676666677788899999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCC---CCCCCCCCCCCCCeEEEEcCCchHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP---DGKNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
.+++.+.....||+|++|||+..++.+++||.++++|+++.++....+... ....+......+++|+|||+|++|+|
T Consensus 218 ~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d 297 (485)
T TIGR01317 218 VDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGAD 297 (485)
T ss_pred CccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHH
Confidence 555444444569999999999668888999999999998876654322110 00011111136799999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+|..+.+ .+.++|+++.+.+......... ..+|......
T Consensus 298 ~a~~a~~--------------------~ga~~V~vv~~~~~~~~~~~~~--------------------~~~~~~~~~~- 336 (485)
T TIGR01317 298 CVGTSLR--------------------HGAASVHQFEIMPKPPEARAKD--------------------NPWPEWPRVY- 336 (485)
T ss_pred HHHHHHH--------------------cCCCEEEEEEecCCChhhcccc--------------------cCCCccchhh-
Confidence 9988775 6778999998765421100000 0011100000
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEE-EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeecc-CCceE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELH-FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGEFE 331 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~-~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~-~g~~~ 331 (483)
.....+.+.. ...|+. ++++..+.++. +++++++.++++....+..+.+|+..++. .++..
T Consensus 337 ------e~~~a~~e~~---------~~~gv~~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~ 399 (485)
T TIGR01317 337 ------RVDYAHEEAA---------AHYGRDPREYSILTKEFI--GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE 399 (485)
T ss_pred ------hhHHHHHhhh---------hhcCccceEEecCcEEEE--EcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence 0001111111 123554 35788899997 52347899998877666555566643332 45666
Q ss_pred EEecCeEEEeeecC-CCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYK-SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVAS 410 (483)
Q Consensus 332 ~i~~D~vi~a~G~~-~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~ 410 (483)
+++||+||+|+|+. |+. .+....|+..+.+|++.+++.. ++|+.|+|||+|||+.++..++ .|+.+|+.+|.+
T Consensus 400 ~i~~D~Vi~AiG~~~p~~----~~~~~~gl~~~~~G~i~~~~~~-~~Ts~~gVfAaGD~~~g~~~~~-~Av~~G~~AA~~ 473 (485)
T TIGR01317 400 VFEADLVLLAMGFVGPEQ----ILLDDFGVKKTRRGNISAGYDD-YSTSIPGVFAAGDCRRGQSLIV-WAINEGRKAAAA 473 (485)
T ss_pred EEECCEEEEccCcCCCcc----ccccccCcccCCCCCEEecCCC-ceECCCCEEEeeccCCCcHHHH-HHHHHHHHHHHH
Confidence 89999999999997 654 2556667888888988654433 8899999999999998887777 799999999999
Q ss_pred HHHHHhcC
Q 011535 411 ISEDLEQG 418 (483)
Q Consensus 411 I~~~l~~~ 418 (483)
|.++|.+.
T Consensus 474 i~~~L~g~ 481 (485)
T TIGR01317 474 VDRYLMGS 481 (485)
T ss_pred HHHHHhcC
Confidence 99999875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=323.50 Aligned_cols=304 Identities=26% Similarity=0.363 Sum_probs=227.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+|||||||||+||..|++.| ++|+|||+.+.+||.+++++ |.+..+.+......+.+...|++|+.++..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~- 610 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP- 610 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc-
Confidence 35689999999999999999999999 99999999999999998876 877666666666666777789999888532
Q ss_pred eEEEecceee-ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 97 ~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
++++.+... .||+||||||++.+++++++|.+ .+++++.++...++.... ....+++|+|||||++|+|+|
T Consensus 611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~~------~~~~GK~VVVIGGGnvAmD~A 682 (1012)
T TIGR03315 611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGPT------INPLGKHVVVVGGGNTAMDAA 682 (1012)
T ss_pred -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhcccc------ccccCCeEEEECCCHHHHHHH
Confidence 234444433 59999999999767778888864 567777666654432211 122589999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
+.+.+ ..++++|++++|+.... +|....+.
T Consensus 683 r~a~R-------------------l~Ga~kVtLVyRr~~~~----------------------------Mpa~~eEl--- 712 (1012)
T TIGR03315 683 RAALR-------------------VPGVEKVTVVYRRTKRY----------------------------MPASREEL--- 712 (1012)
T ss_pred HHHHH-------------------hCCCceEEEEEccCccc----------------------------cccCHHHH---
Confidence 98875 23778999999986422 12111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+ +.||+++++..+.++. ++++ ++....+. .+.+|+...+.+|+..+++
T Consensus 713 ------~~al--------------eeGVe~~~~~~p~~I~-----~g~l---~v~~~~l~~~d~sGr~~~v~~Gee~~I~ 764 (1012)
T TIGR03315 713 ------EEAL--------------EDGVDFKELLSPESFE-----DGTL---TCEVMKLGEPDASGRRRPVGTGETVDLP 764 (1012)
T ss_pred ------HHHH--------------HcCCEEEeCCceEEEE-----CCeE---EEEEEEeecccCCCceeeecCCCeEEEE
Confidence 1111 4689999999998886 3433 23222222 2234555555567777999
Q ss_pred cCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
||+||+|+|++|+. .+.+..|+.++++|++.+|+.. ++|+.|+|||+|||+.+|..++ .|+.+|+.+|.+|++.
T Consensus 765 aD~VIvAiG~~Pnt----~lle~~GL~ld~~G~I~VD~~~-~~Ts~pgVFAaGD~a~GP~tVv-~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 765 ADTVIAAVGEQVDT----DLLQKNGIPLDEYGWPVVNQAT-GETNITNVFVIGDANRGPATIV-EAIADGRKAANAILSR 838 (1012)
T ss_pred eCEEEEecCCcCCh----HHHHhcCcccCCCCCEEeCCCC-CccCCCCEEEEeCcCCCccHHH-HHHHHHHHHHHHHhcc
Confidence 99999999999976 3446678888889999999765 6799999999999998888877 7999999999999875
Q ss_pred Hh
Q 011535 415 LE 416 (483)
Q Consensus 415 l~ 416 (483)
..
T Consensus 839 ~~ 840 (1012)
T TIGR03315 839 EG 840 (1012)
T ss_pred cc
Confidence 43
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=297.39 Aligned_cols=321 Identities=17% Similarity=0.202 Sum_probs=233.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCceecccCCCCCChHHHHHHHHHHHhcCC-eEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~-v~~~~~~~v 95 (483)
.+++|||||||++|+++|..|.++.++.+|++||+.++ ++-.+.|.++.+..+..++...+.++++..+ ++|+.+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 46899999999999999999999843699999999976 4566777787777788889899999998555 999999877
Q ss_pred ce-----EEEecc-eeeccCEEEEccCCCCCCCCCCCCCC-----CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEE
Q 011535 96 GS-----SVSLSE-LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVI 164 (483)
Q Consensus 96 ~~-----~~~~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvV 164 (483)
.. .+++++ ....||+||+|+|+ .+..+++||.. ++.+..+..+..++....+..+...+...-.+++|
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs-~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCC-cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 43 456666 34579999999999 57778999943 45555555555444321111111111012358999
Q ss_pred EcCCchHHHHHHHHhcCCccccccccchHHHHHHhc-CC---ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEG-SS---IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 165 IG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~-~~---~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|||++|+|+|.+|.. ..-+.++. .. --+|+++.+.+.+...|.
T Consensus 161 vGgG~TGVElAgeL~~------------~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~-------------------- 208 (405)
T COG1252 161 VGGGPTGVELAGELAE------------RLHRLLKKFRVDPSELRVILVEAGPRILPMFP-------------------- 208 (405)
T ss_pred ECCChhHHHHHHHHHH------------HHHHHhhhhcCCccccEEEEEccCchhccCCC--------------------
Confidence 9999999999999985 11112221 11 127889888887765444
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
+++.+...+.|. ++||++++++.++++. . + .|++.+
T Consensus 209 --------------~~l~~~a~~~L~-------------~~GV~v~l~~~Vt~v~--~--~----~v~~~~--------- 244 (405)
T COG1252 209 --------------PKLSKYAERALE-------------KLGVEVLLGTPVTEVT--P--D----GVTLKD--------- 244 (405)
T ss_pred --------------HHHHHHHHHHHH-------------HCCCEEEcCCceEEEC--C--C----cEEEcc---------
Confidence 222223333443 7899999999999997 2 2 233322
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-----
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT----- 394 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~----- 394 (483)
++. +|+||++|||+|.++++ +..+ .++..|..|++.|++++ +..++|+||++|||+..+.
T Consensus 245 -------g~~-~I~~~tvvWaaGv~a~~-----~~~~l~~~e~dr~Grl~V~~~L-~~~~~~~IFa~GD~A~~~~~~p~P 310 (405)
T COG1252 245 -------GEE-EIPADTVVWAAGVRASP-----LLKDLSGLETDRRGRLVVNPTL-QVPGHPDIFAAGDCAAVIDPRPVP 310 (405)
T ss_pred -------CCe-eEecCEEEEcCCCcCCh-----hhhhcChhhhccCCCEEeCCCc-ccCCCCCeEEEeccccCCCCCCCC
Confidence 222 79999999999999987 3344 46777889999999998 8899999999999996432
Q ss_pred chhHhhHHHHHHHHHHHHHHHhcCcCCCCCCCCCC
Q 011535 395 GIIATNLYCAEETVASISEDLEQGVLASSSGLPKP 429 (483)
Q Consensus 395 ~~~~~a~~~g~~~a~~I~~~l~~~~~~~~~~~~~~ 429 (483)
+....|++||..+|.||.+++.+.++.++.+...+
T Consensus 311 ~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~G 345 (405)
T COG1252 311 PTAQAAHQQGEYAAKNIKARLKGKPLKPFKYKDKG 345 (405)
T ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCCCCCcccceE
Confidence 33347999999999999999999988888655433
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=291.11 Aligned_cols=324 Identities=27% Similarity=0.376 Sum_probs=226.2
Q ss_pred hhhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcC
Q 011535 6 AWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE 85 (483)
Q Consensus 6 ~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~ 85 (483)
.|++. ...+...++|+|||+|++|+++|..|++.+ .+|++||+.+.++|++.++..+.....+.+.....++. ..
T Consensus 7 ~~~~~--~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~-~~ 81 (352)
T PRK12770 7 AFMCK--EKPPPTGKKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELE-EA 81 (352)
T ss_pred hhhcc--cCCCCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHH-hC
Confidence 35554 233456789999999999999999999998 99999999999999887765333323334444444444 44
Q ss_pred CeEEEeCeEEceE---------------EEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCC-CC
Q 011535 86 RCSFFGNVTLGSS---------------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP-DG 149 (483)
Q Consensus 86 ~v~~~~~~~v~~~---------------~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~-~~ 149 (483)
+++++.++.+... +..++....||+||||||+..++.+++||.+.++++++.++..++.... .+
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~ 161 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGY 161 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccc
Confidence 8999988766211 0111112369999999999546778899988888888765543332211 10
Q ss_pred CCC--CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHH
Q 011535 150 KNL--SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (483)
Q Consensus 150 ~~~--~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~ 227 (483)
... .++. .+++++|||+|++|+|+|..|.. .+.++|+++.|+.......+
T Consensus 162 ~~~~~~~~~-~g~~vvViG~G~~g~e~A~~l~~--------------------~g~~~Vtvi~~~~~~~~~~~------- 213 (352)
T PRK12770 162 LPWEKVPPV-EGKKVVVVGAGLTAVDAALEAVL--------------------LGAEKVYLAYRRTINEAPAG------- 213 (352)
T ss_pred ccccccccc-CCCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEeecchhhCCCC-------
Confidence 010 0112 47899999999999999998875 56667999998764221111
Q ss_pred hcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEE
Q 011535 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v 307 (483)
.+..+.|. +++|+++++..+.++. + ++++..+
T Consensus 214 -------------------------------~~~~~~l~-------------~~gi~i~~~~~v~~i~--~--~~~~~~v 245 (352)
T PRK12770 214 -------------------------------KYEIERLI-------------ARGVEFLELVTPVRII--G--EGRVEGV 245 (352)
T ss_pred -------------------------------HHHHHHHH-------------HcCCEEeeccCceeee--c--CCcEeEE
Confidence 01112232 6799999999999997 4 4667777
Q ss_pred EEeeeeeeCC-CCCceee-ccCCceEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCcee
Q 011535 308 HFEKTALKGG-GPGKQYA-VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLY 384 (483)
Q Consensus 308 ~~~~~~l~~~-~~g~~~~-~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vy 384 (483)
++....+... .+++... ..+++..+++||.||+++|++|++ .+... .|+..+++|++.+|++ ++|+.|+||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~----~l~~~~~g~~~~~~g~i~vd~~--~~t~~~~vy 319 (352)
T PRK12770 246 ELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP----PFAKECLGIELNRKGEIVVDEK--HMTSREGVF 319 (352)
T ss_pred EEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc----hhhhcccCceecCCCcEeeCCC--cccCCCCEE
Confidence 7765443221 1111111 113556689999999999999976 23333 6788888899999987 678999999
Q ss_pred eeccCCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 385 VCGWLKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 385 a~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
++|||+.++..+. .|+.+|+.+|.+|.++|..
T Consensus 320 aiGD~~~~~~~~~-~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 320 AAGDVVTGPSKIG-KAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred EEcccccCcchHH-HHHHHHHHHHHHHHHHHhc
Confidence 9999988776555 8999999999999999864
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=306.71 Aligned_cols=320 Identities=24% Similarity=0.281 Sum_probs=231.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..+.++|+|||+||||+++|..|.+.+ ++|+|||+.+.++|.+.+++ |.+...+++.....+.++..|++++.++.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 346789999999999999999999999 99999999999999999987 776666666666666778889999999988
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+.+++.+.....||+||+|||+..++++++||.+..+++++.++...++...... ......+++|+|||||++|+|+|
T Consensus 357 ~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~--~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 357 GKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGE--GPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred CCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccC--CCcCCCCCcEEEECCchHHHHHH
Confidence 7665555555579999999999767889999999889998877654333211100 00011468999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeec-CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR-GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~-~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (483)
..|.+... ...+..+|+++..+ .... ++....+.
T Consensus 435 ~~l~r~~~---------------~~~g~~~V~v~~~~r~~~~----------------------------~~~~~~e~-- 469 (604)
T PRK13984 435 RSMARLQK---------------MEYGEVNVKVTSLERTFEE----------------------------MPADMEEI-- 469 (604)
T ss_pred HHHHhccc---------------cccCceEEEEeccccCccc----------------------------CCCCHHHH--
Confidence 99975100 01134578876432 1111 12111110
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeec-cCCceEEE
Q 011535 255 SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV-GTGEFEDL 333 (483)
Q Consensus 255 ~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~-~~g~~~~i 333 (483)
.+.+ +.||+++++..+.++. . +++++.++++.......+.+|+.... .+++..++
T Consensus 470 -------~~~~--------------~~GV~i~~~~~~~~i~--~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i 525 (604)
T PRK13984 470 -------EEGL--------------EEGVVIYPGWGPMEVV--I-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIV 525 (604)
T ss_pred -------HHHH--------------HcCCEEEeCCCCEEEE--c-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEE
Confidence 0111 5699999999999987 4 47888888876543222334442222 24556789
Q ss_pred ecCeEEEeeecCCCCCCCCCccCC--CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 334 DCGMVLKSIGYKSVPVNGLPFDNH--KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 334 ~~D~vi~a~G~~~~~~~~l~~~~~--~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
++|+||+|+|++|+.- . +... .++.. ++|++.+|++ ++|++|+|||+||++.++. ++ .|+.+|+.+|.+|
T Consensus 526 ~aD~Vi~aiG~~p~~~-~--l~~~~~~~l~~-~~G~i~vd~~--~~Ts~~gVfAaGD~~~~~~-~v-~Ai~~G~~AA~~I 597 (604)
T PRK13984 526 EADMVVEAIGQAPDYS-Y--LPEELKSKLEF-VRGRILTNEY--GQTSIPWLFAGGDIVHGPD-II-HGVADGYWAAEGI 597 (604)
T ss_pred ECCEEEEeeCCCCChh-h--hhhhhccCccc-cCCeEEeCCC--CccCCCCEEEecCcCCchH-HH-HHHHHHHHHHHHH
Confidence 9999999999999751 1 1111 23444 4688999987 7899999999999998774 45 7999999999999
Q ss_pred HHHHhc
Q 011535 412 SEDLEQ 417 (483)
Q Consensus 412 ~~~l~~ 417 (483)
.++|.+
T Consensus 598 ~~~L~~ 603 (604)
T PRK13984 598 DMYLRK 603 (604)
T ss_pred HHHhcc
Confidence 999865
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=299.05 Aligned_cols=314 Identities=24% Similarity=0.317 Sum_probs=237.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
....++|+|||+||+||++|..|++.| ++|++||+.+.+||++++++ |.+..++++.....+.+...|++++.++.+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 346789999999999999999999999 99999999999999999998 777777777666666677789999999877
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
+.++........||+|++|||+.....+.++|.+..+++.+..+........ .. ..+++|+|||+|++|+|++
T Consensus 211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~------~~-~~gk~v~ViGgg~~a~d~a 283 (564)
T PRK12771 211 GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE------PP-FLGKRVVVIGGGNTAMDAA 283 (564)
T ss_pred CCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC------Cc-CCCCCEEEECChHHHHHHH
Confidence 5554443333469999999999766777899988888887766543221111 11 2578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhcc
Q 011535 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (483)
..+.+ .+.++|++++|++.... +....
T Consensus 284 ~~a~~--------------------lga~~v~ii~r~~~~~~----------------------------~~~~~----- 310 (564)
T PRK12771 284 RTARR--------------------LGAEEVTIVYRRTREDM----------------------------PAHDE----- 310 (564)
T ss_pred HHHHH--------------------cCCCEEEEEEecCcccC----------------------------CCCHH-----
Confidence 87775 56678999999864321 11111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeeccCCceEEEe
Q 011535 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (483)
Q Consensus 256 ~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~~g~~~~i~ 334 (483)
.+.+.. +.||+++++..+.++. . +++.+.++++....+. .+.+|+..++ +++..+++
T Consensus 311 --------~~~~a~----------~~GVki~~~~~~~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~-~g~~~~i~ 368 (564)
T PRK12771 311 --------EIEEAL----------REGVEINWLRTPVEIE--G-DENGATGLRVITVEKMELDEDGRPSPV-TGEEETLE 368 (564)
T ss_pred --------HHHHHH----------HcCCEEEecCCcEEEE--c-CCCCEEEEEEEEEEecccCCCCCeeec-CCceEEEE
Confidence 111111 5689999999999997 4 2333337766554432 2334554443 56667999
Q ss_pred cCeEEEeeecCCCCCCCCCccC-CCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 335 CGMVLKSIGYKSVPVNGLPFDN-HKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 335 ~D~vi~a~G~~~~~~~~l~~~~-~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|+||+|+|++|++ .+.+ ..++. +++|++.+|+.. ++|+.|+|||+||+..++..++ .|+.+|+.+|.+|.+
T Consensus 369 ~D~Vi~A~G~~p~~----~~~~~~~gl~-~~~G~i~vd~~~-~~ts~~~Vfa~GD~~~g~~~v~-~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 369 ADLVVLAIGQDIDS----AGLESVPGVE-VGRGVVQVDPNF-MMTGRPGVFAGGDMVPGPRTVT-TAIGHGKKAARNIDA 441 (564)
T ss_pred CCEEEECcCCCCch----hhhhhccCcc-cCCCCEEeCCCC-ccCCCCCEEeccCcCCCchHHH-HHHHHHHHHHHHHHH
Confidence 99999999999965 2333 35666 778999999855 8899999999999998888777 799999999999999
Q ss_pred HHhcCcCC
Q 011535 414 DLEQGVLA 421 (483)
Q Consensus 414 ~l~~~~~~ 421 (483)
+|.+....
T Consensus 442 ~L~g~~~~ 449 (564)
T PRK12771 442 FLGGEPYE 449 (564)
T ss_pred HHcCCCCC
Confidence 99876543
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=288.76 Aligned_cols=326 Identities=26% Similarity=0.381 Sum_probs=255.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+.++|+|||||||||++|..|.+.+ +.|+++|+.+.+||+++||+ |.+...+++.....+.++..|++|+.++.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 456699999999999999999999999 99999999999999999998 999999999999999999999999999999
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCC--CCCCCCCCCeEEEEcCCchHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN--LSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~vvVIG~G~~g~e 173 (483)
+++++++++...||+|++|||+..++.+++||.++++|+.|.+|+...+..-.... .......+++|+|||+|++++|
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D 276 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMD 276 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHH
Confidence 99999999988899999999998899999999999999999999877664322110 1112225699999999999999
Q ss_pred HHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 174 ~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
+++...+ .|+++|+.++|...... ++..+.
T Consensus 277 ~~~t~~r--------------------~Ga~~v~~~~~~~~~~~---------------------------~~~~~~--- 306 (457)
T COG0493 277 CAGTALR--------------------LGAKSVTCFYREDRDDE---------------------------TNEWPT--- 306 (457)
T ss_pred HHHHHhh--------------------cCCeEEEEecccccccc---------------------------CCcccc---
Confidence 9988776 79999999875432200 000000
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC--CCCceeecc-CCce
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG--GPGKQYAVG-TGEF 330 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~--~~g~~~~~~-~g~~ 330 (483)
+.. +...+ ...++|+.+.+...+.++. .+++|+|..+++..+..... +.++...++ .|+.
T Consensus 307 --~~~----~~~~~---------~a~eeg~~~~~~~~~~~~~--~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~ 369 (457)
T COG0493 307 --WAA----QLEVR---------SAGEEGVERLPFVQPKAFI--GNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTE 369 (457)
T ss_pred --cch----hhhhh---------hhhhcCCcccccCCceeEe--ecCCCcEeeeecccccccCcccccccccCccccCce
Confidence 000 01111 1126789999999999998 54689999998877655422 122322332 4677
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVAS 410 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~ 410 (483)
.++++|+|+.++|+.++..... + ...++..+..|++.++... .+|+.|++||.||+.+|..-++ .|+.+|+.+|+.
T Consensus 370 ~~~~aD~v~~aig~~~~~~~~~-~-~~~~~~~~~~g~i~~~~~~-~~ts~~~vfa~gD~~~g~~~vv-~ai~eGr~aak~ 445 (457)
T COG0493 370 KTDAADTVILAIGFEGDATDGL-L-LEFGLKLDKRGRIKVDENL-QQTSIPGVFAGGDAVRGAALVV-WAIAEGREAAKA 445 (457)
T ss_pred EEehHHHHHHHhccCCCccccc-c-cccccccCCCCceeccccc-ccccCCCeeeCceeccchhhhh-hHHhhchHHHHh
Confidence 7999999999999998753211 1 1226778889999999874 3899999999999999877777 899999999999
Q ss_pred HHHHH
Q 011535 411 ISEDL 415 (483)
Q Consensus 411 I~~~l 415 (483)
|..++
T Consensus 446 i~~~~ 450 (457)
T COG0493 446 IDKEL 450 (457)
T ss_pred hhHHH
Confidence 99443
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=281.01 Aligned_cols=288 Identities=17% Similarity=0.201 Sum_probs=203.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC---------------------------CC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH---------------------------PE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~---------------------------~~ 70 (483)
..++|+||||||||++||..|++.| .+|+|||+.+..|+++..|+.|.. ..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLG--MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 3589999999999999999999999 999999998655656666665531 11
Q ss_pred hHHHH-----------HHHHHHHhcC-CeEEEeCeEE---ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 011535 71 TKIVI-----------NQFSRVVQHE-RCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (483)
Q Consensus 71 ~~~~~-----------~~~~~~~~~~-~v~~~~~~~v---~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~ 135 (483)
...+. ..+...++.. +++++.++.+ .+.+.+......||+||||||+ .|+.+++||.+..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs-~p~~p~i~G~~~~~~~~ 160 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGA-RAAIPPIPGLDEVGYLT 160 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCC-CCCCCCCCCCCcCceEc
Confidence 11111 1233445555 8998888754 2234444334579999999999 67888999987666666
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.++... + ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.+.+.+
T Consensus 161 ~~~~~~~------------~-~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~~ 206 (463)
T PRK06370 161 NETIFSL------------D-ELPEHLVIIGGGYIGLEFAQMFRR--------------------FG-SEVTVIERGPRL 206 (463)
T ss_pred chHhhCc------------c-ccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCCC
Confidence 5443211 0 146899999999999999999985 34 479999998754
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...+. +.....+.+.|. +.||++++++.+.++.
T Consensus 207 l~~~~----------------------------------~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~ 239 (463)
T PRK06370 207 LPRED----------------------------------EDVAAAVREILE-------------REGIDVRLNAECIRVE 239 (463)
T ss_pred CcccC----------------------------------HHHHHHHHHHHH-------------hCCCEEEeCCEEEEEE
Confidence 32211 111112222332 6799999999999997
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. +++.+ .+.+.. ++...++++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 240 --~-~~~~~-~v~~~~---------------~~~~~~i~~D~Vi~A~G~~pn~~-~l~-l~~~g~~~~~~G~i~vd~~-- 296 (463)
T PRK06370 240 --R-DGDGI-AVGLDC---------------NGGAPEITGSHILVAVGRVPNTD-DLG-LEAAGVETDARGYIKVDDQ-- 296 (463)
T ss_pred --E-cCCEE-EEEEEe---------------CCCceEEEeCEEEECcCCCcCCC-CcC-chhhCceECCCCcEeECcC--
Confidence 3 22221 222211 12235799999999999999862 121 3556888888999999988
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.... .|..||+.+|+||+.
T Consensus 297 l~t~~~~IyAiGD~~~~~~~~~-~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGRGAFTH-TAYNDARIVAANLLD 333 (463)
T ss_pred CcCCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHhC
Confidence 7799999999999987666555 799999999999974
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=294.20 Aligned_cols=337 Identities=21% Similarity=0.298 Sum_probs=247.8
Q ss_pred ccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 13 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.+..++.++|+|||+|||||+||-.|-+.| +.|+++||.+.+||++.||+ |.....+.++..-.+++...|++|+.|
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~tn 1855 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVTN 1855 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEee
Confidence 445678899999999999999999999999 99999999999999999999 888777778887788888899999999
Q ss_pred eEEceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC--CCCCCCCCCCeEEEEcCCch
Q 011535 93 VTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK--NLSPDLKSTDTAVILGQGNV 170 (483)
Q Consensus 93 ~~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~vvVIG~G~~ 170 (483)
+++++++.++.+...+|++|+|+|++.|+.+++||-+++||.-+.+|.+.-....--. +....-.++|+|+|||||.+
T Consensus 1856 ~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1856 TEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred ccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCc
Confidence 9999999999999999999999999999999999999999998888775321110000 11111137899999999999
Q ss_pred HHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHH
Q 011535 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (483)
Q Consensus 171 g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (483)
|-||...-.+ .|++.|.-+.-= +.|....
T Consensus 1936 g~dcigtsvr--------------------hg~~sv~n~ell-------------------------------p~pp~~r 1964 (2142)
T KOG0399|consen 1936 GTDCIGTSVR--------------------HGCKSVGNFELL-------------------------------PQPPPER 1964 (2142)
T ss_pred cccccccchh--------------------hccceecceeec-------------------------------CCCCccc
Confidence 9999987665 566655322110 1111111
Q ss_pred HhhccHHHH-HHHHHH--HHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeecc-
Q 011535 251 EMKNSRIQR-RVYELL--SKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG- 326 (483)
Q Consensus 251 ~~~~~~~~~-r~~~~l--~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~- 326 (483)
....+|+.. |+.+.- ...+.. .-....+-..+ ..++++ ++++|.|++++..+++.+.+..|+++...
T Consensus 1965 a~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~v----ltk~f~--~~~~g~v~gl~~vrvew~k~~~g~w~~~ei 2035 (2142)
T KOG0399|consen 1965 APDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSV----LTKRFI--GDDNGNVTGLETVRVEWEKDDKGRWQMKEI 2035 (2142)
T ss_pred CCCCCCccCceEEEeecchHHHHH---HhCCCcceeee----eeeeee--ccCCCceeeEEEEEEEEEecCCCceEEEEc
Confidence 111111111 000000 000000 00011122222 235677 55799999999999999888888876554
Q ss_pred CCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHH
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEE 406 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~ 406 (483)
.++.+.|+||+||+|.||-.+... ..++.++..+.++.+.+.... .++++++|||+|||.+|.+-++ .|+++|++
T Consensus 2036 ~~see~~eadlv~lamgf~gpe~~---~~~~~~~~~d~rsni~t~~~~-y~t~v~~vfaagdcrrgqslvv-wai~egrq 2110 (2142)
T KOG0399|consen 2036 NNSEEIIEADLVILAMGFVGPEKS---VIEQLNLKTDPRSNILTPKDS-YSTDVAKVFAAGDCRRGQSLVV-WAIQEGRQ 2110 (2142)
T ss_pred CCcceeeecceeeeeccccCcchh---hhhhcCcccCccccccCCCcc-ccccccceeecccccCCceEEE-EEehhhhH
Confidence 556678999999999999875422 346677888888888765554 7799999999999999988888 89999999
Q ss_pred HHHHHHHHHhc
Q 011535 407 TVASISEDLEQ 417 (483)
Q Consensus 407 ~a~~I~~~l~~ 417 (483)
+|..+-..+.+
T Consensus 2111 ~a~~vd~~~~~ 2121 (2142)
T KOG0399|consen 2111 AARQVDELMGG 2121 (2142)
T ss_pred HHHHHHHHhCC
Confidence 99999885444
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=274.66 Aligned_cols=283 Identities=18% Similarity=0.210 Sum_probs=195.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC---------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP---------------------------E 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~---------------------------~ 70 (483)
.++|+||||||||++||..|++.| .+|+|||+.. +|| ++..|+.|... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 479999999999999999999999 9999999964 555 45566655420 1
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCC-CCCCCCCCCeee
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDLIGVHS 135 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~-~ipg~~~~~v~~ 135 (483)
... +...+...++..+++++.++..- ..+.+......||+||||||+ .|+.| ++||.+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs-~p~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGG-KPSFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCCCce--eEc
Confidence 111 11224445566789988876641 223333334579999999999 46666 7887642 122
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.++.. +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+
T Consensus 156 ~~~~~~----------~~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~~i 201 (450)
T TIGR01421 156 SDGFFA----------LE---ELPKRVVIVGAGYIAVELAGVLHG--------------------LG-SETHLVIRHERV 201 (450)
T ss_pred HHHhhC----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCCC
Confidence 222211 00 135799999999999999999985 33 579999998765
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...|.. .....+.+.|. ++||+++++..+.++.
T Consensus 202 l~~~d~----------------------------------~~~~~~~~~l~-------------~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 202 LRSFDS----------------------------------MISETITEEYE-------------KEGINVHKLSKPVKVE 234 (450)
T ss_pred CcccCH----------------------------------HHHHHHHHHHH-------------HcCCEEEcCCEEEEEE
Confidence 433321 11222223333 6799999999999987
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. +++....+.+. .+ .++++||.||+|+|++|++. .+ ..+..++.++++|++.+|++
T Consensus 235 --~-~~~~~~~v~~~----------------~g-~~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~G~i~vd~~-- 290 (450)
T TIGR01421 235 --K-TVEGKLVIHFE----------------DG-KSIDDVDELIWAIGRKPNTK-GL-GLENVGIKLNEKGQIIVDEY-- 290 (450)
T ss_pred --E-eCCceEEEEEC----------------CC-cEEEEcCEEEEeeCCCcCcc-cC-CccccCcEECCCCcEEeCCC--
Confidence 3 12211122221 12 14799999999999999872 11 24667888999999999998
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|++|+|||+|||+..+.... .|.++|+.+|++|..
T Consensus 291 ~~T~~p~IyAiGD~~~~~~~~~-~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKVELTP-VAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCCcccHH-HHHHHHHHHHHHHhc
Confidence 7899999999999987665554 799999999999863
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=257.13 Aligned_cols=284 Identities=22% Similarity=0.251 Sum_probs=208.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCeEEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v~~~ 90 (483)
..++|+|||||||||+||.++.+.+ .+++||+....+||.+... -.|+++ ...++...+.+++...++++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 3579999999999999999999999 9955555555566543211 113333 345778888888888898887
Q ss_pred eCeEEc----e---EEEecceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCC
Q 011535 91 GNVTLG----S---SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (483)
Q Consensus 91 ~~~~v~----~---~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (483)
...+.. . .+.+.+....+++||||||+ .++.+++||+. .++|..+.... . +..++
T Consensus 80 ~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~-~~~~~~~~~e~e~~g~gv~yc~~cd-------------g-~~~~k 144 (305)
T COG0492 80 EDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYCATCD-------------G-FFKGK 144 (305)
T ss_pred EEEEEEEeecCceEEEEECCCeEEEeEEEECcCC-cccCCCCCcchhhcCCceEEeeecC-------------c-cccCC
Confidence 743321 1 23444445568999999999 68888888654 23444333211 1 22678
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||||++|+|-|..|.+ -+++||+++|++.+..
T Consensus 145 ~v~ViGgG~sAve~Al~L~~---------------------~a~~Vtlv~r~~~~ra----------------------- 180 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSK---------------------IAKKVTLVHRRDEFRA----------------------- 180 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHH---------------------hcCeEEEEecCcccCc-----------------------
Confidence 99999999999999999985 5578999999986421
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+.+.+.+.+ ..+|.+++++.+.++. + ++ +.++++.+++
T Consensus 181 -----------------~~~~~~~l~~------------~~~i~~~~~~~i~ei~--G--~~-v~~v~l~~~~------- 219 (305)
T COG0492 181 -----------------EEILVERLKK------------NVKIEVLTNTVVKEIL--G--DD-VEGVVLKNVK------- 219 (305)
T ss_pred -----------------CHHHHHHHHh------------cCCeEEEeCCceeEEe--c--Cc-cceEEEEecC-------
Confidence 0011122221 2389999999999998 6 44 7788887631
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-chhHh
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT-GIIAT 399 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~-~~~~~ 399 (483)
++..++++|-++.++|+.|+. .|....++ ++++|++.+++. ++|++|||||+||++..+. .++ +
T Consensus 220 -------~~~~~~~~~gvf~~iG~~p~~----~~~~~~~~-~~~~g~I~v~~~--~~TsvpGifAaGDv~~~~~rqi~-t 284 (305)
T COG0492 220 -------GEEKELPVDGVFIAIGHLPNT----ELLKGLGV-LDENGYIVVDEE--METSVPGIFAAGDVADKNGRQIA-T 284 (305)
T ss_pred -------CceEEEEeceEEEecCCCCch----HHHhhccc-cCCCCcEEcCCC--cccCCCCEEEeEeeccCcccEEe-e
Confidence 455689999999999999986 24455555 788999999987 8999999999999987665 455 8
Q ss_pred hHHHHHHHHHHHHHHHhcC
Q 011535 400 NLYCAEETVASISEDLEQG 418 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l~~~ 418 (483)
|..+|..+|.++.++|...
T Consensus 285 a~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 285 AAGDGAIAALSAERYLESL 303 (305)
T ss_pred hhhhHHHHHHHHHHHhhhc
Confidence 9999999999999998753
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=260.37 Aligned_cols=280 Identities=23% Similarity=0.315 Sum_probs=197.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-c---cCCCCC---ChHHHHHHHHHHHhcCCeEEEeC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---VAPDHP---ETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g---~~p~~~---~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
++|+||||||||+++|..|++.+ .+|+|||+.+ +||.+.. . -.|+++ ...++..++.+.++..+++++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 48999999999999999999998 9999999887 5554321 1 114432 33577888888888889998874
Q ss_pred eEEce-------EEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 93 VTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 93 ~~v~~-------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.++.. .+.+.++ ...||+||+|||+ .++.+++||.+. .+++... .+. .....+++
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~i~g~~~~~~~~~~~~~----~~~---------~~~~~~~~ 143 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA-SARKLGIPGEDEFLGRGVSYCA----TCD---------GPFFKNKE 143 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC-CcccCCCCChhhcCCccEEEee----ecC---------hhhcCCCE
Confidence 33321 1223332 3469999999999 577778888541 1222111 110 01125789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ ..++|+++.|++.+..
T Consensus 144 v~ViG~G~~~~e~a~~l~~---------------------~~~~V~~v~~~~~~~~------------------------ 178 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTR---------------------IAKKVTLVHRRDKFRA------------------------ 178 (300)
T ss_pred EEEECCChHHHHHHHHHHh---------------------hcCEEEEEEeCcccCc------------------------
Confidence 9999999999999999875 3468999998764210
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc-eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR-ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+.+.+.+. ++ +|++++++.+.++. . ++++..+++...
T Consensus 179 ----------------~~~~~~~l~-------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~-------- 217 (300)
T TIGR01292 179 ----------------EKILLDRLR-------------KNPNIEFLWNSTVKEIV--G--DNKVEGVKIKNT-------- 217 (300)
T ss_pred ----------------CHHHHHHHH-------------hCCCeEEEeccEEEEEE--c--cCcEEEEEEEec--------
Confidence 001112222 44 99999999999997 4 445555655431
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcchhHh
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTGIIAT 399 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~~~~~ 399 (483)
.+++..++++|+||||+|++|+. .+.+.. +..+++|++.++++ +++++|+||++|||+. .+.... .
T Consensus 218 -----~~g~~~~i~~D~vi~a~G~~~~~----~~l~~~-~~~~~~g~i~v~~~--~~t~~~~vya~GD~~~~~~~~~~-~ 284 (300)
T TIGR01292 218 -----VTGEEEELKVDGVFIAIGHEPNT----ELLKGL-LELDEGGYIVTDEG--MRTSVPGVFAAGDVRDKGYRQAV-T 284 (300)
T ss_pred -----CCCceEEEEccEEEEeeCCCCCh----HHHHHh-heecCCCcEEECCC--CccCCCCEEEeecccCcchhhhh-h
Confidence 13555689999999999999976 233433 55677899999988 7799999999999987 455454 7
Q ss_pred hHHHHHHHHHHHHHHH
Q 011535 400 NLYCAEETVASISEDL 415 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l 415 (483)
|+.+|+.+|.+|.++|
T Consensus 285 A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 285 AAGDGCIAALSAERYL 300 (300)
T ss_pred hhhhHHHHHHHHHhhC
Confidence 9999999999998764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=275.20 Aligned_cols=286 Identities=19% Similarity=0.240 Sum_probs=200.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC-------------------------Ch---
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-------------------------ET--- 71 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~-------------------------~~--- 71 (483)
++|+||||||||++||..+++.+ .+|+|||+.+..|.++.+|+.|... ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 48999999999999999999999 9999999987555556666666311 01
Q ss_pred ----HHHHHH-----HHHHHhcCCeEEEeCeEE---ceEEEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCeeecc
Q 011535 72 ----KIVINQ-----FSRVVQHERCSFFGNVTL---GSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (483)
Q Consensus 72 ----~~~~~~-----~~~~~~~~~v~~~~~~~v---~~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~ 137 (483)
+++... +..+++..+++++.+... ...+.+.++ ...||+||||||+ .|..+++||.+..++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs-~p~~p~i~G~~~~~~~~~~ 157 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGA-RPAIPPIPGLKEAGYLTSE 157 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCC-CCCCCCCCCcccCceECch
Confidence 112111 334566678998877654 223444442 3469999999999 5787889997755555544
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++... . ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+..
T Consensus 158 ~~~~~------------~-~~~~~vvIIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 158 EALAL------------D-RIPESLAVIGGGAIGVELAQAFAR--------------------LG-SEVTILQRSDRLLP 203 (463)
T ss_pred hhhCc------------c-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCCcCCC
Confidence 33210 0 135799999999999999999885 34 47999999865432
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +.....+.+.+. +.||+++++..+.++.
T Consensus 204 ~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~V~~i~-- 234 (463)
T TIGR02053 204 REE----------------------------------PEISAAVEEALA-------------EEGIEVVTSAQVKAVS-- 234 (463)
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------HcCCEEEcCcEEEEEE--
Confidence 211 111112222332 6789999999999987
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. ++....+.+.. .+..+++++|.||+|+|++|+.. .+ ..+..++..+++|++.+|++ ++
T Consensus 235 ~--~~~~~~v~~~~---------------~~~~~~i~~D~ViiA~G~~p~~~-~l-~l~~~g~~~~~~G~i~vd~~--~~ 293 (463)
T TIGR02053 235 V--RGGGKIITVEK---------------PGGQGEVEADELLVATGRRPNTD-GL-GLEKAGVKLDERGGILVDET--LR 293 (463)
T ss_pred E--cCCEEEEEEEe---------------CCCceEEEeCEEEEeECCCcCCC-CC-CccccCCEECCCCcEeECCC--cc
Confidence 3 22222233221 12335899999999999999862 12 13566788888999999987 78
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+.++.... .|+.||+.+|.||+.
T Consensus 294 Ts~~~VyAiGD~~~~~~~~~-~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 294 TSNPGIYAAGDVTGGLQLEY-VAAKEGVVAAENALG 328 (463)
T ss_pred CCCCCEEEeeecCCCcccHh-HHHHHHHHHHHHhcC
Confidence 99999999999988766555 799999999999974
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=264.53 Aligned_cols=287 Identities=18% Similarity=0.286 Sum_probs=207.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC---------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~--------------------------- 69 (483)
..++++|||+||||..+|.++++.+ .+|.++|+.+..|| ++++||.|...
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 4689999999999999999999999 77999999965554 56777766421
Q ss_pred ChHHHH-----------HHHHHHHhcCCeEEEeCeEE---ceEEEecc---eeeccCEEEEccCCCCCCCCCCCCCCCCC
Q 011535 70 ETKIVI-----------NQFSRVVQHERCSFFGNVTL---GSSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (483)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~~v~~~~~~~v---~~~~~~~~---~~~~yd~vvlAtG~~~~~~~~ipg~~~~~ 132 (483)
..+++. ..+..+++..+++++.+... ...+.+.. ....++++|||||+ .|..|+++|.+...
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS-~p~~~~~~~~~~~~ 159 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS-RPRIPPGPGIDGAR 159 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC-CCcCCCCCCCCCCe
Confidence 111111 12334455567877766543 12344443 34579999999999 68888888887666
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
++++.+..... ..+++++|||||.+|+|+|..+.+ .|. +|||+.|.
T Consensus 160 ~~~s~~~l~~~-------------~lP~~lvIiGgG~IGlE~a~~~~~--------------------LG~-~VTiie~~ 205 (454)
T COG1249 160 ILDSSDALFLL-------------ELPKSLVIVGGGYIGLEFASVFAA--------------------LGS-KVTVVERG 205 (454)
T ss_pred EEechhhcccc-------------cCCCEEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecC
Confidence 76665533211 146899999999999999999986 564 79999999
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+.. +. .+.+.+.|. +.++.++++..+.
T Consensus 206 ~~iLp~~D~-----------------------------ei-----~~~~~~~l~-------------~~gv~i~~~~~v~ 238 (454)
T COG1249 206 DRILPGEDP-----------------------------EI-----SKELTKQLE-------------KGGVKILLNTKVT 238 (454)
T ss_pred CCCCCcCCH-----------------------------HH-----HHHHHHHHH-------------hCCeEEEccceEE
Confidence 876543331 11 111223332 5689999999998
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . .++. ..+.+++ ++..++++|.|++|+|.+||. +++.+ ++.|+.++++|+|.||.
T Consensus 239 ~~~--~-~~~~-v~v~~~~----------------g~~~~~~ad~vLvAiGR~Pn~-~~LgL-e~~Gv~~~~rg~I~VD~ 296 (454)
T COG1249 239 AVE--K-KDDG-VLVTLED----------------GEGGTIEADAVLVAIGRKPNT-DGLGL-ENAGVELDDRGFIKVDD 296 (454)
T ss_pred EEE--e-cCCe-EEEEEec----------------CCCCEEEeeEEEEccCCccCC-CCCCh-hhcCceECCCCCEEeCC
Confidence 887 3 2222 2344332 222279999999999999986 44433 67899999999999994
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
. ++|++|+|||+|||..++. ....|..+|+.+|++|+.
T Consensus 297 -~-~~Tnvp~IyA~GDV~~~~~-Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 297 -Q-MTTNVPGIYAIGDVIGGPM-LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred -c-cccCCCCEEEeeccCCCcc-cHhHHHHHHHHHHHHHhC
Confidence 4 7888999999999988888 445899999999999997
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=274.15 Aligned_cols=311 Identities=15% Similarity=0.126 Sum_probs=205.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
.++++|||||||+||+.+|..|.+.. ++|+|||+++++ +..+.+.++.+.....++...+.+.+...+++|+.+.+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~--~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK--YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC--CeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 45689999999999999999997655 999999998864 223333344444456677777888787778888887665
Q ss_pred ce-----EEEe----------cce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeeccee------eeeecCCCCCCC--
Q 011535 96 GS-----SVSL----------SEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF------VWWYNGHPDGKN-- 151 (483)
Q Consensus 96 ~~-----~~~~----------~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~------~~~~~~~~~~~~-- 151 (483)
.. .+.+ .++ ...||+||||||+ .+..+++||.+. .++....+ ...+....+...
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs-~~~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 163 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA-RPNTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASLP 163 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCc-ccCCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 32 2333 222 3579999999999 567778888642 22222211 111110000000
Q ss_pred -CCC-CCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc-----CCccEEEEEeecCcccccCCHHHH
Q 011535 152 -LSP-DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG-----SSIRKVYLVGRRGPVQAACTAKEL 224 (483)
Q Consensus 152 -~~~-~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~-----~~~~~V~li~r~~~~~~~f~~~el 224 (483)
.+. .....++++|||+|++|+|+|.+|... .-+..++ ....+|+++.+.+.+...+.
T Consensus 164 ~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~------------~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~---- 227 (424)
T PTZ00318 164 TTSVEERKRLLHFVVVGGGPTGVEFAAELADF------------FRDDVRNLNPELVEECKVTVLEAGSEVLGSFD---- 227 (424)
T ss_pred CCChHHHhccCEEEEECCCHHHHHHHHHHHHH------------HHHHHHhhhhcccccCEEEEEcCCCcccccCC----
Confidence 000 011235899999999999999998740 0000000 02357999998865432222
Q ss_pred HHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCce
Q 011535 225 REILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304 (483)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v 304 (483)
+...+.+.+.|. ++||+++++..+.++. . +
T Consensus 228 ------------------------------~~~~~~~~~~L~-------------~~gV~v~~~~~v~~v~--~--~--- 257 (424)
T PTZ00318 228 ------------------------------QALRKYGQRRLR-------------RLGVDIRTKTAVKEVL--D--K--- 257 (424)
T ss_pred ------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCeEEEEe--C--C---
Confidence 112222334443 7799999999998886 2 2
Q ss_pred EEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCcee
Q 011535 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLY 384 (483)
Q Consensus 305 ~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vy 384 (483)
.+.+. +| +++++|++||++|.+|++ +....++..+++|+|.+|+++ +.+++|+||
T Consensus 258 -~v~~~----------------~g--~~i~~d~vi~~~G~~~~~-----~~~~~~l~~~~~G~I~Vd~~l-~~~~~~~If 312 (424)
T PTZ00318 258 -EVVLK----------------DG--EVIPTGLVVWSTGVGPGP-----LTKQLKVDKTSRGRISVDDHL-RVKPIPNVF 312 (424)
T ss_pred -EEEEC----------------CC--CEEEccEEEEccCCCCcc-----hhhhcCCcccCCCcEEeCCCc-ccCCCCCEE
Confidence 23322 22 389999999999999976 445567777888999999985 557999999
Q ss_pred eeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhcCc-CCCC
Q 011535 385 VCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQGV-LASS 423 (483)
Q Consensus 385 a~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~~~-~~~~ 423 (483)
|+|||+.. |.... .|++||..+|.||.+.+.+.+ +.++
T Consensus 313 AiGD~a~~~~~~~~~~~~-~A~~qg~~~A~ni~~~l~g~~~~~~~ 356 (424)
T PTZ00318 313 ALGDCAANEERPLPTLAQ-VASQQGVYLAKEFNNELKGKPMSKPF 356 (424)
T ss_pred EEeccccCCCCCCCCchH-HHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999863 22333 699999999999999998875 4544
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=258.89 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=197.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc----CCCC---CChHHHHHHHHHHHhcCCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDH---PETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~----~p~~---~~~~~~~~~~~~~~~~~~v~~ 89 (483)
...++|+|||||||||+||..|++++ +++++||.. .+||.+.... .|.. .....+..++.+.....+.++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 45689999999999999999999999 899999954 4565532210 1321 233455667777777666666
Q ss_pred EeCeEEce-----E--EEecceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCC
Q 011535 90 FGNVTLGS-----S--VSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (483)
Q Consensus 90 ~~~~~v~~-----~--~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (483)
..+..... . ++.+.....||+||||||+ .++.+++||.+ ..+++.+. +... ....+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~-~~~~~~i~g~~~~~~~~v~~~~----~~~~---------~~~~g 146 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACA----TCDG---------FFYRN 146 (321)
T ss_pred EeeEEEEEEecCCeEEEEecCCEEEECEEEECCCC-CCCCCCCCCHHHcCCCcEEEee----cCCH---------HHcCC
Confidence 55433211 1 2222233569999999999 57778888854 22332211 1111 11257
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~ 239 (483)
++|+|||+|++|+|+|..|.+ ..++|+++.|++.+. +.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~---------------------~~~~Vtlv~~~~~~~--~~------------------- 184 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN---------------------IASEVHLIHRRDGFR--AE------------------- 184 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEECCccC--CC-------------------
Confidence 899999999999999999985 346899999986431 00
Q ss_pred ccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCC
Q 011535 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (483)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~ 319 (483)
+...+++.+.| .+.+|+++++..+.++. + +++.+..+++....
T Consensus 185 ---------------~~~~~~~~~~l-------------~~~gV~i~~~~~v~~v~--~-~~~~~~~v~~~~~~------ 227 (321)
T PRK10262 185 ---------------KILIKRLMDKV-------------ENGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ------ 227 (321)
T ss_pred ---------------HHHHHHHHhhc-------------cCCCeEEEeCCEEEEEE--c-CCccEEEEEEEEcC------
Confidence 01111122222 27789999999999997 4 34456666665411
Q ss_pred CceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC---CCCcccCceeeeccCCCCC-cc
Q 011535 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGP-TG 395 (483)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~---~~~t~~p~vya~Gd~~~g~-~~ 395 (483)
..++.+++++|.|||++|++|+.. +... ++.. ++|++.++++. .++|++|+|||+|||++.+ ..
T Consensus 228 ------~~~~~~~i~~D~vv~a~G~~p~~~----l~~~-~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~ 295 (321)
T PRK10262 228 ------NSDNIESLDVAGLFVAIGHSPNTA----IFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ 295 (321)
T ss_pred ------CCCeEEEEECCEEEEEeCCccChh----Hhhc-cccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcce
Confidence 023345899999999999999872 2222 3444 46889888621 1789999999999998654 45
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 396 IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+. .|+.+|..+|..|.++|.+.
T Consensus 296 ~~-~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 296 AI-TSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred EE-EEehhHHHHHHHHHHHHHhc
Confidence 55 69999999999999999764
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=271.21 Aligned_cols=286 Identities=15% Similarity=0.174 Sum_probs=193.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC--------------------------Ch
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------ET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~--------------------------~~ 71 (483)
.++|+||||||||+++|..|++.| .+|+|||+.+.+|| .+.+|+.|... ..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI 81 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 589999999999999999999999 99999999876776 45566555421 01
Q ss_pred HHHHH-----------HHHHHHhcCCeEEEeCeEEc---eE--EEecce---eeccCEEEEccCCCCCC-CCCCCCCCCC
Q 011535 72 KIVIN-----------QFSRVVQHERCSFFGNVTLG---SS--VSLSEL---RQLYHVVVLAYGAESDR-ALGIPGEDLI 131 (483)
Q Consensus 72 ~~~~~-----------~~~~~~~~~~v~~~~~~~v~---~~--~~~~~~---~~~yd~vvlAtG~~~~~-~~~ipg~~~~ 131 (483)
..+.. .+...++..+++++.+...- .. +...++ ...||+||||||+ .|+ ++.+++ +.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~p~~~~-~~~ 159 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGS-RPIQLPFIPH-DDP 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCC-CCCCCCCCCC-CCC
Confidence 11111 12234556789988776431 12 222233 3479999999999 454 344454 334
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
+++++.+.... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+
T Consensus 160 ~v~~~~~~~~~----------~---~~~~~vvIiGgG~iG~E~A~~l~~--------------------~G-~~Vtlv~~ 205 (471)
T PRK06467 160 RIWDSTDALEL----------K---EVPKRLLVMGGGIIGLEMGTVYHR--------------------LG-SEVDVVEM 205 (471)
T ss_pred cEEChHHhhcc----------c---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CCEEEEec
Confidence 55544433311 0 135899999999999999999885 34 57999998
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
.+.+...+.. + ....+.+.|. ++ +.++++..+
T Consensus 206 ~~~il~~~d~-~---------------------------------~~~~~~~~l~-------------~~-v~i~~~~~v 237 (471)
T PRK06467 206 FDQVIPAADK-D---------------------------------IVKVFTKRIK-------------KQ-FNIMLETKV 237 (471)
T ss_pred CCCCCCcCCH-H---------------------------------HHHHHHHHHh-------------hc-eEEEcCCEE
Confidence 8765432221 1 1111222222 44 888988888
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~ 371 (483)
.++. . .++.+ .+++... .++.+++++|.||+|+|++|+.- .+ .....|+.++++|++.+|
T Consensus 238 ~~i~--~-~~~~~-~v~~~~~--------------~~~~~~i~~D~vi~a~G~~pn~~-~l-~~~~~gl~~~~~G~I~Vd 297 (471)
T PRK06467 238 TAVE--A-KEDGI-YVTMEGK--------------KAPAEPQRYDAVLVAVGRVPNGK-LL-DAEKAGVEVDERGFIRVD 297 (471)
T ss_pred EEEE--E-cCCEE-EEEEEeC--------------CCcceEEEeCEEEEeecccccCC-cc-ChhhcCceECCCCcEeeC
Confidence 8886 3 22222 2332210 12235799999999999999862 11 235668889899999999
Q ss_pred CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 372 ~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|+.|+|||+|||+..+.... .|+.+|+.+|.+|+.
T Consensus 298 ~~--~~t~~p~VyAiGDv~~~~~la~-~A~~eG~~aa~~i~g 336 (471)
T PRK06467 298 KQ--CRTNVPHIFAIGDIVGQPMLAH-KGVHEGHVAAEVIAG 336 (471)
T ss_pred CC--cccCCCCEEEehhhcCCcccHH-HHHHHHHHHHHHHcC
Confidence 88 7799999999999987666555 799999999999864
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=268.29 Aligned_cols=281 Identities=17% Similarity=0.177 Sum_probs=192.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCC--------------------------C-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------E- 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~--------------------------~- 70 (483)
.++|+||||||||++||..+++.| .+|+|||+. .+||. ...|+.|... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG--AKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 479999999999999999999999 999999985 56664 4456656431 0
Q ss_pred ----------hHHHHHHHHHHHhcCCeEEEeCeEEce---EEEe--cceeeccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 011535 71 ----------TKIVINQFSRVVQHERCSFFGNVTLGS---SVSL--SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (483)
Q Consensus 71 ----------~~~~~~~~~~~~~~~~v~~~~~~~v~~---~~~~--~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~ 135 (483)
...+...+...++..+++++.+..... .+.. ......||+||||||+ .|..+++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs-~p~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGG-RPQKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCC-cCCCCCCCCccc--eec
Confidence 011223445556677899887754311 2222 1123479999999999 577778888642 222
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.+... +. ..+++++|||+|.+|+|+|..+.+ .+ .+|+++.+.+.+
T Consensus 156 ~~~~~~----------l~---~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~~ 201 (446)
T TIGR01424 156 SNEAFH----------LP---TLPKSILILGGGYIAVEFAGIWRG--------------------LG-VQVTLIYRGELI 201 (446)
T ss_pred hHHhhc----------cc---ccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEeCCCC
Confidence 222110 00 136799999999999999999875 33 579999988654
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...+. +.....+.+.|. ++||+++++..+.++.
T Consensus 202 l~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~ 234 (446)
T TIGR01424 202 LRGFD----------------------------------DDMRALLARNME-------------GRGIRIHPQTSLTSIT 234 (446)
T ss_pred CcccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE
Confidence 32221 111112223332 6789999999888886
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. +++.+ .+.+. ++.++++|.||+|+|++|+.. .+ ..+..|+.++++|++.+|++
T Consensus 235 --~-~~~~~-~v~~~------------------~g~~i~~D~viva~G~~pn~~-~l-~l~~~g~~~~~~G~i~vd~~-- 288 (446)
T TIGR01424 235 --K-TDDGL-KVTLS------------------HGEEIVADVVLFATGRSPNTK-GL-GLEAAGVELNDAGAIAVDEY-- 288 (446)
T ss_pred --E-cCCeE-EEEEc------------------CCcEeecCEEEEeeCCCcCCC-cC-CccccCeEECCCCcEEeCCC--
Confidence 3 12211 12211 123799999999999999862 11 23567888888999999998
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|++|+|||+|||+.++.-.. .|++||+.+|++|+.
T Consensus 289 ~~Ts~~~IyA~GD~~~~~~l~~-~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDRINLTP-VAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCCccchh-HHHHHHHHHHHHHhc
Confidence 7899999999999986555444 799999999999964
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=268.56 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=193.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC---------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP---------------------------E 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~---------------------------~ 70 (483)
.++|+||||||||++||..|++.+ .+|+|||+. .+|| .++.|+.|... .
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 479999999999999999999999 999999986 5565 34445444310 0
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
... +...+.+.+...+++++.+.... ..+.++.....||+||||||+ .|..+++||.+ .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~g~~--~~~~~ 157 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGG-RPSIPDIPGAE--YGITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCcc--eeEch
Confidence 111 11223344556789988876432 234443334579999999998 57777888864 23333
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++..+ . ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+.
T Consensus 158 ~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l 203 (450)
T PRK06116 158 DGFFAL----------E---ELPKRVAVVGAGYIAVEFAGVLNG--------------------LG-SETHLFVRGDAPL 203 (450)
T ss_pred hHhhCc----------c---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCCCc
Confidence 322110 0 135899999999999999999875 34 5799999887543
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..+. +...+.+.+.|. ++||+++++..+.++.
T Consensus 204 ~~~~----------------------------------~~~~~~l~~~L~-------------~~GV~i~~~~~V~~i~- 235 (450)
T PRK06116 204 RGFD----------------------------------PDIRETLVEEME-------------KKGIRLHTNAVPKAVE- 235 (450)
T ss_pred cccC----------------------------------HHHHHHHHHHHH-------------HCCcEEECCCEEEEEE-
Confidence 2222 111222223332 6799999999999997
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~ 376 (483)
.++++.+ .+.+. +| +++++|.||+|+|++|+.- .+ ..+..|+.++++|++.+|++ +
T Consensus 236 -~~~~g~~-~v~~~----------------~g--~~i~~D~Vv~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~vd~~--~ 291 (450)
T PRK06116 236 -KNADGSL-TLTLE----------------DG--ETLTVDCLIWAIGREPNTD-GL-GLENAGVKLNEKGYIIVDEY--Q 291 (450)
T ss_pred -EcCCceE-EEEEc----------------CC--cEEEeCEEEEeeCCCcCCC-CC-CchhcCceECCCCcEecCCC--C
Confidence 3123322 12221 22 3799999999999999762 11 13556888888999999988 7
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++|+|||+|||+.++.... .|+.+|+.+|.+|..
T Consensus 292 ~Ts~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 327 (450)
T PRK06116 292 NTNVPGIYAVGDVTGRVELTP-VAIAAGRRLSERLFN 327 (450)
T ss_pred CcCCCCEEEEeecCCCcCcHH-HHHHHHHHHHHHHhC
Confidence 799999999999986655554 799999999999964
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=268.09 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=198.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCCCC--------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP--------------------------E 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~~~--------------------------~ 70 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.+||.. ..|+.|... .
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 4589999999999999999999999 9999999987777754 445544211 1
Q ss_pred hHHHH-----------HHHHHHHhcCCeEEEeCeEEc---e--EEEecce---eeccCEEEEccCCCCCCCCCCCCCCCC
Q 011535 71 TKIVI-----------NQFSRVVQHERCSFFGNVTLG---S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLI 131 (483)
Q Consensus 71 ~~~~~-----------~~~~~~~~~~~v~~~~~~~v~---~--~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~ 131 (483)
..++. ..+.+.+...+++++.+.... . .+...++ ...||+||||||+ .|..|++++.+.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs-~p~~p~~~~~~~~ 160 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGS-RPYRPPDVDFDHP 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCCCCC
Confidence 11111 123344556788888776531 1 1222232 3469999999998 5666677776666
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
+++++.++.... ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|
T Consensus 161 ~v~~~~~~~~~~-------------~~~~~v~IiGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~ 206 (461)
T PRK05249 161 RIYDSDSILSLD-------------HLPRSLIIYGAGVIGCEYASIFAA--------------------LG-VKVTLINT 206 (461)
T ss_pred eEEcHHHhhchh-------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEec
Confidence 677665543210 146899999999999999999985 33 57999999
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
++.+...+. +.....+.+.+. ++||+++++..+
T Consensus 207 ~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gI~v~~~~~v 239 (461)
T PRK05249 207 RDRLLSFLD----------------------------------DEISDALSYHLR-------------DSGVTIRHNEEV 239 (461)
T ss_pred CCCcCCcCC----------------------------------HHHHHHHHHHHH-------------HcCCEEEECCEE
Confidence 876532222 111122223332 668999999999
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~ 371 (483)
.++. . +++. +.+.. .++ .++++|.||+|+|++|+.. . ...+..++.++++|++.+|
T Consensus 240 ~~i~--~-~~~~---~~v~~--------------~~g--~~i~~D~vi~a~G~~p~~~-~-l~l~~~g~~~~~~G~i~vd 295 (461)
T PRK05249 240 EKVE--G-GDDG---VIVHL--------------KSG--KKIKADCLLYANGRTGNTD-G-LNLENAGLEADSRGQLKVN 295 (461)
T ss_pred EEEE--E-eCCe---EEEEE--------------CCC--CEEEeCEEEEeecCCcccc-C-CCchhhCcEecCCCcEeeC
Confidence 8886 3 2222 22211 022 3799999999999999862 1 1235678888889999999
Q ss_pred CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 372 ~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|+.|+|||+|||+..+.... .|+.+|+.+|.+|..
T Consensus 296 ~~--~~t~~~~IyAiGD~~~~~~~~~-~A~~~g~~aa~~i~g 334 (461)
T PRK05249 296 EN--YQTAVPHIYAVGDVIGFPSLAS-ASMDQGRIAAQHAVG 334 (461)
T ss_pred CC--cccCCCCEEEeeecCCCcccHh-HHHHHHHHHHHHHcC
Confidence 87 7899999999999987666555 799999999999973
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=269.63 Aligned_cols=285 Identities=19% Similarity=0.230 Sum_probs=197.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccC---CCC--CChHHHHHHHHHHHhcCCeEEEeC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVA---PDH--PETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~---p~~--~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.++|+|||||||||+||..|++.+ ++|+|||+. ..||.+.. ... |+. ....++...+.+.++..+++++..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~ 80 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence 489999999999999999999998 999999996 45665432 111 322 233567777888888888888654
Q ss_pred eEEce-------EEEecceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 93 VTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 93 ~~v~~-------~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.+... .+...+....|++||||||+ .++.+++||.+ ..+++.... ... ....+++|
T Consensus 81 ~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa-~p~~~~ipG~~~~~~~~v~~~~~----~~~---------~~~~g~~V 146 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARGDYKTLAVLIATGA-SPRKLGFPGEEEFTGRGVAYCAT----CDG---------EFFTGMDV 146 (555)
T ss_pred EEEEEEecCCEEEEEecCCEEEEeEEEECCCC-ccCCCCCCCHHHhCCceEEEEee----cCh---------hhcCCCEE
Confidence 43321 12233334568899999999 57888899864 223322111 110 11257899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ ...+|+++.|.+.+.. .
T Consensus 147 vVIGgG~~g~E~A~~L~~---------------------~g~~Vtli~~~~~~~~--~---------------------- 181 (555)
T TIGR03143 147 FVIGGGFAAAEEAVFLTR---------------------YASKVTVIVREPDFTC--A---------------------- 181 (555)
T ss_pred EEECCCHHHHHHHHHHHc---------------------cCCEEEEEEeCCcccc--C----------------------
Confidence 999999999999999875 3468999998864210 0
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.. ..+.+. ..+||+++++..+.++. + ++.+..+.+...
T Consensus 182 ------------~~----~~~~~~------------~~~gV~i~~~~~V~~i~--~--~~~v~~v~~~~~---------- 219 (555)
T TIGR03143 182 ------------KL----IAEKVK------------NHPKIEVKFNTELKEAT--G--DDGLRYAKFVNN---------- 219 (555)
T ss_pred ------------HH----HHHHHH------------hCCCcEEEeCCEEEEEE--c--CCcEEEEEEEEC----------
Confidence 00 001111 15689999999999997 4 455544444321
Q ss_pred eeccCCceEE--EecCe----EEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-Ccc
Q 011535 323 YAVGTGEFED--LDCGM----VLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTG 395 (483)
Q Consensus 323 ~~~~~g~~~~--i~~D~----vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~ 395 (483)
.+|+..+ ++||. ||+++|++|++ .+... ++.++++|+|.+|++ ++|++|+|||+|||+.. +..
T Consensus 220 ---~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~----~l~~~-~l~l~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~~ 289 (555)
T TIGR03143 220 ---VTGEITEYKAPKDAGTFGVFVFVGYAPSS----ELFKG-VVELDKRGYIPTNED--METNVPGVYAAGDLRPKELRQ 289 (555)
T ss_pred ---CCCCEEEEeccccccceEEEEEeCCCCCh----hHHhh-hcccCCCCeEEeCCc--cccCCCCEEEceeccCCCcch
Confidence 1233333 34776 99999999987 23332 567788899999987 78999999999999753 344
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 396 IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+. .|+.+|+.+|.+|.++|.+.
T Consensus 290 v~-~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 290 VV-TAVADGAIAATSAERYVKEL 311 (555)
T ss_pred he-eHHhhHHHHHHHHHHHHHhh
Confidence 54 79999999999999999754
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=268.86 Aligned_cols=287 Identities=20% Similarity=0.268 Sum_probs=204.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CCC--CCChHHHHHHHHHHHhcCCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p~--~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
...++|+||||||||++||.+|++.+ .+|+||++ .+||.+.. ++ .+. +....++...+.+.++..+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 45689999999999999999999999 99999975 46665531 11 011 12445677788888888899998
Q ss_pred eCeEEce--------EEEecce-eeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 91 ~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
.+..+.. .+.+.++ ...||+||+|||+ .++.+++||.+ ..+++... +.+ .....
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa-~~~~~~ipG~~~~~~~~v~~~~--------~~~-----~~~~~ 351 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA-RWRKLGVPGEKEYIGKGVAYCP--------HCD-----GPFFK 351 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC-CcCCCCCCCHHHcCCCeEEEee--------ccC-----hhhcC
Confidence 8765421 2333333 2469999999999 47778888853 12222111 100 01125
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|+. ..++|+++.+.+.+..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~---------------------~g~~Vtli~~~~~l~~--------------------- 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG---------------------IVRHVTVLEFADELKA--------------------- 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh---------------------cCcEEEEEEeCCcCCh---------------------
Confidence 7899999999999999999975 3468999987654310
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
.+.+.+.+. ...||+++++..+.++. + +++++.++.+.+.
T Consensus 390 -------------------~~~l~~~l~------------~~~gV~i~~~~~v~~i~--~-~~~~v~~v~~~~~------ 429 (515)
T TIGR03140 390 -------------------DKVLQDKLK------------SLPNVDILTSAQTTEIV--G-DGDKVTGIRYQDR------ 429 (515)
T ss_pred -------------------hHHHHHHHh------------cCCCCEEEECCeeEEEE--c-CCCEEEEEEEEEC------
Confidence 000112221 03689999999999997 4 3467777776541
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+++.++++||.||+|+|++|++ .+.+.. +..+++|+|.+|++ ++|++|+|||+|||+..+...+.
T Consensus 430 -------~~~~~~~i~~D~vi~a~G~~Pn~----~~l~~~-~~~~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~~~~ 495 (515)
T TIGR03140 430 -------NSGEEKQLDLDGVFVQIGLVPNT----EWLKDA-VELNRRGEIVIDER--GRTSVPGIFAAGDVTTVPYKQII 495 (515)
T ss_pred -------CCCcEEEEEcCEEEEEeCCcCCc----hHHhhh-cccCCCCeEEECCC--CCCCCCCEEEcccccCCccceEE
Confidence 13445689999999999999987 343444 66777899999998 77999999999999876654333
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 011535 399 TNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~ 417 (483)
.|+.+|..+|.+|..+|..
T Consensus 496 ~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 496 IAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred EEEccHHHHHHHHHHHHhh
Confidence 7999999999999998753
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=268.85 Aligned_cols=284 Identities=18% Similarity=0.178 Sum_probs=192.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec---------CCCCCCc-eecccCCCCC-----------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---------LPTPFGL-VRSGVAPDHP----------------- 69 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~---------~~~~ggl-~~~g~~p~~~----------------- 69 (483)
...++|+||||||||+++|..+++.| .+|+|||+ ...+||. +..|+.|...
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~ 100 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNY 100 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999 99999996 2345664 3445544211
Q ss_pred ----------ChHHHH-----------HHHHHHHhcCCeEEEeCeEE--c---eEEEeccee---eccCEEEEccCCCCC
Q 011535 70 ----------ETKIVI-----------NQFSRVVQHERCSFFGNVTL--G---SSVSLSELR---QLYHVVVLAYGAESD 120 (483)
Q Consensus 70 ----------~~~~~~-----------~~~~~~~~~~~v~~~~~~~v--~---~~~~~~~~~---~~yd~vvlAtG~~~~ 120 (483)
....+. ..+...+...+++++.+... . ..++..++. ..||+||||||+ .+
T Consensus 101 G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs-~p 179 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGS-RA 179 (499)
T ss_pred CcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCC-CC
Confidence 111111 12234455578888887542 1 223333432 468999999999 57
Q ss_pred CCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc
Q 011535 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (483)
Q Consensus 121 ~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~ 200 (483)
..+++||.+. ..++.+... +. ..+++++|||+|++|+|+|..|.+
T Consensus 180 ~~p~ipG~~~--~~~~~~~~~----------l~---~~~k~vvVIGgG~ig~E~A~~l~~-------------------- 224 (499)
T PLN02507 180 QRPNIPGKEL--AITSDEALS----------LE---ELPKRAVVLGGGYIAVEFASIWRG-------------------- 224 (499)
T ss_pred CCCCCCCccc--eechHHhhh----------hh---hcCCeEEEECCcHHHHHHHHHHHH--------------------
Confidence 7778888542 222222111 00 135799999999999999999875
Q ss_pred CCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCc
Q 011535 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ 280 (483)
Q Consensus 201 ~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~ 280 (483)
. ..+|+|+.|.+.....|. +.....+.+.|. +
T Consensus 225 ~-G~~Vtli~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~ 256 (499)
T PLN02507 225 M-GATVDLFFRKELPLRGFD----------------------------------DEMRAVVARNLE-------------G 256 (499)
T ss_pred c-CCeEEEEEecCCcCcccC----------------------------------HHHHHHHHHHHH-------------h
Confidence 3 358999998865432222 111222223332 6
Q ss_pred ceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCc
Q 011535 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~ 360 (483)
+||+++++..+.++. . +++.+ .+.+ +++.++++|.||+++|++|+.. .+ ..+..|+
T Consensus 257 ~GI~i~~~~~V~~i~--~-~~~~~-~v~~------------------~~g~~i~~D~vl~a~G~~pn~~-~l-~l~~~gl 312 (499)
T PLN02507 257 RGINLHPRTNLTQLT--K-TEGGI-KVIT------------------DHGEEFVADVVLFATGRAPNTK-RL-NLEAVGV 312 (499)
T ss_pred CCCEEEeCCEEEEEE--E-eCCeE-EEEE------------------CCCcEEEcCEEEEeecCCCCCC-CC-CchhhCc
Confidence 789999999999987 3 22322 1211 1224799999999999999872 11 1356788
Q ss_pred ccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 361 ~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.++++|++.+|++ ++|+.|+|||+|||+.++.... .|++||+.+|+||..
T Consensus 313 ~~~~~G~I~Vd~~--~~Ts~p~IyAiGDv~~~~~l~~-~A~~qg~~aa~ni~g 362 (499)
T PLN02507 313 ELDKAGAVKVDEY--SRTNIPSIWAIGDVTNRINLTP-VALMEGTCFAKTVFG 362 (499)
T ss_pred EECCCCcEecCCC--CcCCCCCEEEeeEcCCCCccHH-HHHHHHHHHHHHHcC
Confidence 8888999999988 7799999999999987665554 799999999999863
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=267.94 Aligned_cols=288 Identities=20% Similarity=0.251 Sum_probs=207.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CC--CCCChHHHHHHHHHHHhcCCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--AP--DHPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p--~~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
...++|+||||||||++||.+|++.| ++|+||++. +||.+.. ++ .+ .+....++...+.+.++..+++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG--IRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34689999999999999999999999 999999864 6776531 11 01 123456788888888888899988
Q ss_pred eCeEEce--------EEEecce-eeccCEEEEccCCCCCCCCCCCCCC-C--CCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED-L--IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 91 ~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~-~--~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
.++.+.. .+.+.++ ...||.||+|||+ .++.+++||.+ . .+++... +.+ . ....
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~-~~r~~~ipG~~~~~~~~v~~~~--------~~~----~-~~~~ 350 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA-RWRNMNVPGEDEYRNKGVAYCP--------HCD----G-PLFK 350 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC-CcCCCCCCCHHHhcCceEEEee--------ccC----c-hhcC
Confidence 8765522 1223333 3469999999999 57778888853 1 2222111 111 0 1126
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|.. ..++|+++.|++.+..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~---------------------~~~~Vtlv~~~~~l~~--------------------- 388 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG---------------------IVKHVTVLEFAPELKA--------------------- 388 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEEECccccc---------------------
Confidence 7899999999999999999985 3478999988764310
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
. +.+.+.+. ...||++++++.+.++. + +++++..+++.+.
T Consensus 389 ----------------~---~~l~~~l~------------~~~gI~i~~~~~v~~i~--~-~~g~v~~v~~~~~------ 428 (517)
T PRK15317 389 ----------------D---QVLQDKLR------------SLPNVTIITNAQTTEVT--G-DGDKVTGLTYKDR------ 428 (517)
T ss_pred ----------------c---HHHHHHHh------------cCCCcEEEECcEEEEEE--c-CCCcEEEEEEEEC------
Confidence 0 00111111 13689999999999998 4 3467777776541
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+++..+++||.|++++|++|++ .|.+.. +..+++|++.+|++ ++|++|+|||+|||+..+...+.
T Consensus 429 -------~~g~~~~i~~D~v~~~~G~~p~~----~~l~~~-v~~~~~g~i~vd~~--l~Ts~p~IyAaGDv~~~~~k~~~ 494 (517)
T PRK15317 429 -------TTGEEHHLELEGVFVQIGLVPNT----EWLKGT-VELNRRGEIIVDAR--GATSVPGVFAAGDCTTVPYKQII 494 (517)
T ss_pred -------CCCcEEEEEcCEEEEeECCccCc----hHHhhh-eeeCCCCcEEECcC--CCCCCCCEEECccccCCCCCEEE
Confidence 13455689999999999999987 344444 67788899999988 67999999999999886644333
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 011535 399 TNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~ 418 (483)
.|+.+|..+|.++.++|...
T Consensus 495 ~A~~eG~~Aa~~~~~~l~~~ 514 (517)
T PRK15317 495 IAMGEGAKAALSAFDYLIRN 514 (517)
T ss_pred EhhhhHHHHHHHHHHHHhhc
Confidence 89999999999999998754
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=263.79 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=192.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC--------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------E 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~--------------------------~ 70 (483)
..++|+||||||||++||..|++.+ .+|+|||+.+ .|| ++..|+.|.+. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 3579999999999999999999999 9999999987 666 45666656421 1
Q ss_pred hHHHHHH-----------HHHHHhcCCeEEEeCeEEc---eEEEec--c--eeeccCEEEEccCCCCCCCCCCCCCCCCC
Q 011535 71 TKIVINQ-----------FSRVVQHERCSFFGNVTLG---SSVSLS--E--LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (483)
Q Consensus 71 ~~~~~~~-----------~~~~~~~~~v~~~~~~~v~---~~~~~~--~--~~~~yd~vvlAtG~~~~~~~~ipg~~~~~ 132 (483)
..++..+ +...++..+++++.+.... ..+++. + ....||+||||||+. +.. +||.+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~-p~~--~pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSR-PRE--LPGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCC-CCC--CCCCCCCC
Confidence 1222222 3445566789988876542 123332 1 235799999999994 433 34544322
Q ss_pred --eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 133 --VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 133 --v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
+++..+... +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 157 ~~v~~~~~~~~----------~~---~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g-~~Vtli~ 202 (462)
T PRK06416 157 RVIWTSDEALN----------LD---EVPKSLVVIGGGYIGVEFASAYAS--------------------LG-AEVTIVE 202 (462)
T ss_pred CeEEcchHhhC----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEE
Confidence 333322211 01 135799999999999999999875 34 4799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 290 (483)
|.+.+...+. +.....+.+.+. ++||+++++..
T Consensus 203 ~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~ 235 (462)
T PRK06416 203 ALPRILPGED----------------------------------KEISKLAERALK-------------KRGIKIKTGAK 235 (462)
T ss_pred cCCCcCCcCC----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCCE
Confidence 8875432211 111122223332 67899999999
Q ss_pred cceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee
Q 011535 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 291 ~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v 370 (483)
+.++. . +++.+ .+.+.+ .++.+++++|.||+|+|++|+.. .+. .+..|+..+ +|++.+
T Consensus 236 V~~i~--~-~~~~v-~v~~~~---------------gg~~~~i~~D~vi~a~G~~p~~~-~l~-l~~~gl~~~-~g~i~v 293 (462)
T PRK06416 236 AKKVE--Q-TDDGV-TVTLED---------------GGKEETLEADYVLVAVGRRPNTE-NLG-LEELGVKTD-RGFIEV 293 (462)
T ss_pred EEEEE--E-eCCEE-EEEEEe---------------CCeeEEEEeCEEEEeeCCccCCC-CCC-chhcCCeec-CCEEeE
Confidence 99997 3 23322 122211 12335799999999999999862 111 245678787 899999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.||..
T Consensus 294 d~~--~~t~~~~VyAiGD~~~~~~~~~-~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 294 DEQ--LRTNVPNIYAIGDIVGGPMLAH-KASAEGIIAAEAIAG 333 (462)
T ss_pred CCC--CccCCCCEEEeeecCCCcchHH-HHHHHHHHHHHHHcC
Confidence 988 6799999999999987665555 799999999999975
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=264.11 Aligned_cols=300 Identities=15% Similarity=0.196 Sum_probs=199.0
Q ss_pred eEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+|||||||+||+.+|..|.++ .++.+|+|||++++. +....+++..+.....++...+.++++..+++|+.+.+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999765 467999999998763 22222222233334556666777788888999988766533
Q ss_pred ----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeec---CCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 98 ----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN---GHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 98 ----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
.+.+.++. ..||+||||||+ .+..+++||. .++++....+..... ...+. .. +...+++++|||+|.
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~-~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~vvVvG~G~ 155 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGS-TTPLSGVEGA-ADLAVPVKPIENFLARWEALLES--AD-APPGTKRLAVVGGGA 155 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCC-CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHH--Hh-cCCCCceEEEECCCH
Confidence 34454443 469999999999 5777788884 333433222111100 00000 00 011357999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCc-cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~-~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 248 (483)
+|+|+|..|.+ .+++.+. .+|+++ +.+.+...+.
T Consensus 156 ~g~E~A~~l~~----------------~~~~~g~~~~V~li-~~~~~l~~~~---------------------------- 190 (364)
T TIGR03169 156 AGVEIALALRR----------------RLPKRGLRGQVTLI-AGASLLPGFP---------------------------- 190 (364)
T ss_pred HHHHHHHHHHH----------------HHHhcCCCceEEEE-eCCcccccCC----------------------------
Confidence 99999999974 1222232 479988 4433221111
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCC
Q 011535 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (483)
Q Consensus 249 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g 328 (483)
+.....+.+.|. +.||+++++..+.++. . + .+.+. +|
T Consensus 191 ------~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~---~---~v~~~----------------~g 227 (364)
T TIGR03169 191 ------AKVRRLVLRLLA-------------RRGIEVHEGAPVTRGP--D---G---ALILA----------------DG 227 (364)
T ss_pred ------HHHHHHHHHHHH-------------HCCCEEEeCCeeEEEc--C---C---eEEeC----------------CC
Confidence 111222223333 6789999998888885 2 2 23221 12
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCc-ccCceeeeccCCCC-----CcchhHhhHH
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWLKRG-----PTGIIATNLY 402 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t-~~p~vya~Gd~~~g-----~~~~~~~a~~ 402 (483)
.++++|.||+|+|++|++ +....++..+++|++.+|++ +++ +.|+|||+|||+.. +.... .|+.
T Consensus 228 --~~i~~D~vi~a~G~~p~~-----~l~~~gl~~~~~g~i~vd~~--l~~~~~~~Iya~GD~~~~~~~~~~~~~~-~A~~ 297 (364)
T TIGR03169 228 --RTLPADAILWATGARAPP-----WLAESGLPLDEDGFLRVDPT--LQSLSHPHVFAAGDCAVITDAPRPKAGV-YAVR 297 (364)
T ss_pred --CEEecCEEEEccCCChhh-----HHHHcCCCcCCCCeEEECCc--cccCCCCCEEEeeeeeecCCCCCCCchH-HHHH
Confidence 379999999999999976 33445677788899999987 555 89999999999852 22233 6999
Q ss_pred HHHHHHHHHHHHHhcCcCCCC
Q 011535 403 CAEETVASISEDLEQGVLASS 423 (483)
Q Consensus 403 ~g~~~a~~I~~~l~~~~~~~~ 423 (483)
||+.+|.||.+.+.+.+++.+
T Consensus 298 ~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 298 QAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred hHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999988876665
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=261.52 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=196.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCc-eecccCCCCC---------ChHHHHH-----------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHP---------ETKIVIN----------- 76 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl-~~~g~~p~~~---------~~~~~~~----------- 76 (483)
.++|+||||||||++||..|++.+ .+|+|||+.+. +||. +..|+.|.+. ...++..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 99999999875 4663 5667767543 1122211
Q ss_pred HHHHHHhcCCeEEEeCeEE---ceEEEecc----eeeccCEEEEccCCCCCCCCCCCCCC-CCCeeecceeeeeecCCCC
Q 011535 77 QFSRVVQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHPD 148 (483)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~v---~~~~~~~~----~~~~yd~vvlAtG~~~~~~~~ipg~~-~~~v~~a~~~~~~~~~~~~ 148 (483)
...+.+...+++++.+... .+.+.+.. ....||+||||||+ .++.+++||.+ .++++++.++..+.
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs-~~~~p~i~G~~~~~~v~~~~~~~~~~----- 154 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGA-VSNVLPIPGLADSKHVYDSTGIQSLE----- 154 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCC-CCCCCCCCCcCCCCcEEchHHHhcch-----
Confidence 1223455668888877642 12233321 23479999999999 57778899963 56677665544211
Q ss_pred CCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHh
Q 011535 149 GKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (483)
Q Consensus 149 ~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~ 228 (483)
..+++|+|||+|++|+|+|..|++ .+ .+|+++.|.+.+...+. +
T Consensus 155 --------~~~~~vvIIGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~-~------ 198 (438)
T PRK07251 155 --------TLPERLGIIGGGNIGLEFAGLYNK--------------------LG-SKVTVLDAASTILPREE-P------ 198 (438)
T ss_pred --------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCccCCCCC-H------
Confidence 135799999999999999999875 34 47999999875432211 1
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEE
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~ 308 (483)
.....+.+.+. ++||+++++..+.++. . +++. +.
T Consensus 199 ---------------------------~~~~~~~~~l~-------------~~GI~i~~~~~V~~i~--~-~~~~---v~ 232 (438)
T PRK07251 199 ---------------------------SVAALAKQYME-------------EDGITFLLNAHTTEVK--N-DGDQ---VL 232 (438)
T ss_pred ---------------------------HHHHHHHHHHH-------------HcCCEEEcCCEEEEEE--e-cCCE---EE
Confidence 11112222332 6789999999999987 3 2222 21
Q ss_pred EeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeecc
Q 011535 309 FEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGW 388 (483)
Q Consensus 309 ~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd 388 (483)
+.. ++ .++++|.||+|+|++|+. ..+. .+..++..+++|.+.+|++ ++|+.|+|||+||
T Consensus 233 v~~---------------~g--~~i~~D~viva~G~~p~~-~~l~-l~~~~~~~~~~g~i~vd~~--~~t~~~~IyaiGD 291 (438)
T PRK07251 233 VVT---------------ED--ETYRFDALLYATGRKPNT-EPLG-LENTDIELTERGAIKVDDY--CQTSVPGVFAVGD 291 (438)
T ss_pred EEE---------------CC--eEEEcCEEEEeeCCCCCc-ccCC-chhcCcEECCCCcEEECCC--cccCCCCEEEeee
Confidence 111 12 379999999999999975 2222 2345677778899999987 7899999999999
Q ss_pred CCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 389 LKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 389 ~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.++.... .+..+|+.++.++..
T Consensus 292 ~~~~~~~~~-~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 292 VNGGPQFTY-ISLDDFRIVFGYLTG 315 (438)
T ss_pred cCCCcccHh-HHHHHHHHHHHHHcC
Confidence 987766666 789999988887764
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=270.59 Aligned_cols=289 Identities=14% Similarity=0.167 Sum_probs=195.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC----CceecccCCC-CCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPD-HPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g----gl~~~g~~p~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
++|+|||||+||+++|..|++.+++.+|+|||+++.++ ++..+ . ++ +....++.....+.+...+++++.+..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYF-V-GGFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceE-e-ccccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 48999999999999999999987778999999998753 11111 1 22 223344444445556667899887654
Q ss_pred Ec------eEEEecc---e-eec--cCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 95 LG------SSVSLSE---L-RQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 95 v~------~~~~~~~---~-~~~--yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
+. +.+.+.+ . ... ||+||||||+ .+..+++||.+.+++++...+.....-.. .-.+. .+++|
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~g~~~~~v~~~~~~~~~~~l~~----~l~~~-~~~~v 152 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA-RPIIPPIKNINLENVYTLKSMEDGLALKE----LLKDE-EIKNI 152 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHH----HHhhc-CCCEE
Confidence 42 2233322 1 233 9999999999 57777889987777776554322111000 00001 46899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-cCCHHHHHHHhcCCCeeEEecccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-ACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
+|||+|++|+|+|..|.+ .+ ++|+++.+.+.+.. .|.
T Consensus 153 vVvGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~~--------------------- 190 (444)
T PRK09564 153 VIIGAGFIGLEAVEAAKH--------------------LG-KNVRIIQLEDRILPDSFD--------------------- 190 (444)
T ss_pred EEECCCHHHHHHHHHHHh--------------------cC-CcEEEEeCCcccCchhcC---------------------
Confidence 999999999999998875 33 57999988764321 111
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
+.....+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 191 -------------~~~~~~l~~~l~-------------~~gI~v~~~~~v~~i~--~--~~~~~~v~~------------ 228 (444)
T PRK09564 191 -------------KEITDVMEEELR-------------ENGVELHLNEFVKSLI--G--EDKVEGVVT------------ 228 (444)
T ss_pred -------------HHHHHHHHHHHH-------------HCCCEEEcCCEEEEEe--c--CCcEEEEEe------------
Confidence 111222223332 6789999999999886 3 444332221
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--------
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------- 393 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-------- 393 (483)
.+ .+++||.||+|+|++|+. ++.+..|+..+++|++.+|++ ++|+.|+|||+|||+..+
T Consensus 229 -----~~--~~i~~d~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~ 295 (444)
T PRK09564 229 -----DK--GEYEADVVIVATGVKPNT----EFLEDTGLKTLKNGAIIVDEY--GETSIENIYAAGDCATIYNIVSNKNV 295 (444)
T ss_pred -----CC--CEEEcCEEEECcCCCcCH----HHHHhcCccccCCCCEEECCC--cccCCCCEEEeeeEEEEEeccCCCee
Confidence 11 269999999999999975 456777888888899999987 678999999999998531
Q ss_pred -cchhHhhHHHHHHHHHHHHH
Q 011535 394 -TGIIATNLYCAEETVASISE 413 (483)
Q Consensus 394 -~~~~~~a~~~g~~~a~~I~~ 413 (483)
......|+.||+.+|.||..
T Consensus 296 ~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 296 YVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred eccchHHHHHHHHHHHHHhcC
Confidence 11233689999999999874
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=262.04 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=195.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCc-eecccCCCCC---------ChH-------HHHHHH--
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHP---------ETK-------IVINQF-- 78 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl-~~~g~~p~~~---------~~~-------~~~~~~-- 78 (483)
.++|+||||||||++||..|++.+ .+|+|||+.+. .||. ...|+.|... ... .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999 99999999864 5664 3566666532 111 111112
Q ss_pred ---HHHHhcCCeEEEeCeEEc-----eEEEecce--eeccCEEEEccCCCCCCCCCCCCCC-CCCeeecceeeeeecCCC
Q 011535 79 ---SRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHP 147 (483)
Q Consensus 79 ---~~~~~~~~v~~~~~~~v~-----~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~-~~~v~~a~~~~~~~~~~~ 147 (483)
.++.+..+++++.+.... ..+...+. ...||+||||||+ .+..+++||.+ .++++++..+...
T Consensus 81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs-~p~~p~i~G~~~~~~v~~~~~~~~~----- 154 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGA-QTVVPPIPGITTTPGVYDSTGLLNL----- 154 (441)
T ss_pred hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCC-cCCCCCCCCccCCCCEEChhHhhcc-----
Confidence 122334488887765431 12233333 3579999999999 57778899964 5667665443311
Q ss_pred CCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHH
Q 011535 148 DGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (483)
Q Consensus 148 ~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~ 227 (483)
. ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+...+.
T Consensus 155 -------~-~~~~~v~ViGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~------- 198 (441)
T PRK08010 155 -------K-ELPGHLGILGGGYIGVEFASMFAN--------------------FG-SKVTILEAASLFLPRED------- 198 (441)
T ss_pred -------c-ccCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCCCCCCcC-------
Confidence 0 135799999999999999999985 33 57999999765432221
Q ss_pred hcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEE
Q 011535 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v 307 (483)
+.....+.+.|. ++||+++++..+.++. . +++. +
T Consensus 199 ---------------------------~~~~~~l~~~l~-------------~~gV~v~~~~~v~~i~--~-~~~~---v 232 (441)
T PRK08010 199 ---------------------------RDIADNIATILR-------------DQGVDIILNAHVERIS--H-HENQ---V 232 (441)
T ss_pred ---------------------------HHHHHHHHHHHH-------------hCCCEEEeCCEEEEEE--E-cCCE---E
Confidence 111112223332 6799999999999987 3 2332 2
Q ss_pred EEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeec
Q 011535 308 HFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCG 387 (483)
Q Consensus 308 ~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~G 387 (483)
.+.. ++ .++++|.|++|+|.+|++. . ...+..|+.++++|++.+|++ ++|++|+|||+|
T Consensus 233 ~v~~----------------~~-g~i~~D~vl~a~G~~pn~~-~-l~~~~~gl~~~~~G~i~vd~~--~~Ts~~~IyA~G 291 (441)
T PRK08010 233 QVHS----------------EH-AQLAVDALLIASGRQPATA-S-LHPENAGIAVNERGAIVVDKY--LHTTADNIWAMG 291 (441)
T ss_pred EEEE----------------cC-CeEEeCEEEEeecCCcCCC-C-cCchhcCcEECCCCcEEECCC--cccCCCCEEEee
Confidence 2211 11 1588999999999999862 1 123566888888899999988 789999999999
Q ss_pred cCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 388 WLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 388 d~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
||+.++.-.. .|..+|+.++.+|+.
T Consensus 292 D~~~~~~~~~-~a~~~~~~~~~~~~g 316 (441)
T PRK08010 292 DVTGGLQFTY-ISLDDYRIVRDELLG 316 (441)
T ss_pred ecCCCccchh-HHHHHHHHHHHHHcC
Confidence 9987666555 799999999999853
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=266.77 Aligned_cols=283 Identities=14% Similarity=0.155 Sum_probs=192.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC---------CCCCC-ceecccCCCCC-------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---------PTPFG-LVRSGVAPDHP------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~---------~~~gg-l~~~g~~p~~~------------------- 69 (483)
.++|+|||+||||+.||..+++.| .+|+|||+. ..+|| ++++|+.|...
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 478999999999999999999999 999999962 22344 34444433210
Q ss_pred --------Ch-------H----HHHHHHHHHHhcCCeEEEeCeEE--c-eEEEecceeeccCEEEEccCCCCCCCCCCCC
Q 011535 70 --------ET-------K----IVINQFSRVVQHERCSFFGNVTL--G-SSVSLSELRQLYHVVVLAYGAESDRALGIPG 127 (483)
Q Consensus 70 --------~~-------~----~~~~~~~~~~~~~~v~~~~~~~v--~-~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg 127 (483)
.. + .+...+.+.++..+++++.+... . ..+.++.....||+||||||+ .+..|++||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs-~p~~P~IpG 235 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGG-RPFIPDIPG 235 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCC-CCCCCCCCC
Confidence 00 1 12234455566778999887443 1 224333334579999999999 577778888
Q ss_pred CCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEE
Q 011535 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (483)
Q Consensus 128 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~ 207 (483)
.+ .++++.++..+ . ..+++|+|||+|.+|+|+|..|.. . ..+|+
T Consensus 236 ~~--~v~~~~~~l~~----------~---~~~k~V~VIGgG~iGvE~A~~L~~--------------------~-g~~Vt 279 (558)
T PLN02546 236 IE--HAIDSDAALDL----------P---SKPEKIAIVGGGYIALEFAGIFNG--------------------L-KSDVH 279 (558)
T ss_pred hh--hccCHHHHHhc----------c---ccCCeEEEECCCHHHHHHHHHHHh--------------------c-CCeEE
Confidence 54 23333322210 0 146899999999999999999875 2 35899
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEee
Q 011535 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (483)
Q Consensus 208 li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~ 287 (483)
++.|.+.+...|. +.....+.+.|. ++||++++
T Consensus 280 lv~~~~~il~~~d----------------------------------~~~~~~l~~~L~-------------~~GV~i~~ 312 (558)
T PLN02546 280 VFIRQKKVLRGFD----------------------------------EEVRDFVAEQMS-------------LRGIEFHT 312 (558)
T ss_pred EEEeccccccccC----------------------------------HHHHHHHHHHHH-------------HCCcEEEe
Confidence 9998865432222 111122223333 67999999
Q ss_pred cCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCe
Q 011535 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (483)
Q Consensus 288 ~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~ 367 (483)
+..+.++. .++++.+ .+. +++++.+.+|.||+++|++|+.. .+ ..+..|+.++++|+
T Consensus 313 ~~~v~~i~--~~~~g~v---~v~----------------~~~g~~~~~D~Viva~G~~Pnt~-~L-~le~~gl~~d~~G~ 369 (558)
T PLN02546 313 EESPQAII--KSADGSL---SLK----------------TNKGTVEGFSHVMFATGRKPNTK-NL-GLEEVGVKMDKNGA 369 (558)
T ss_pred CCEEEEEE--EcCCCEE---EEE----------------ECCeEEEecCEEEEeeccccCCC-cC-ChhhcCCcCCCCCc
Confidence 99999886 3123322 111 11223456899999999999872 11 13567888888999
Q ss_pred eeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 368 v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|.+|++ ++|++|+|||+|||+.++.... .|+.+|..+|.+|..
T Consensus 370 I~VD~~--l~Ts~p~IYAaGDv~~~~~l~~-~A~~~g~~~a~~i~g 412 (558)
T PLN02546 370 IEVDEY--SRTSVPSIWAVGDVTDRINLTP-VALMEGGALAKTLFG 412 (558)
T ss_pred EeECCC--ceeCCCCEEEeeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 999988 7899999999999987665554 799999999999864
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=257.83 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=192.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCC-ceecccCCCCCChHHHHH-HHHHHHhcCCeEEEeCeEEc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFG-LVRSGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~gg-l~~~g~~p~~~~~~~~~~-~~~~~~~~~~v~~~~~~~v~ 96 (483)
++|+|||||+||+++|..|++.+++.+|+||++++. ++. .....+..+....+++.. ...+++++.+++++.+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 689999999999999999999888899999998875 231 111122233334455543 35566677899998876552
Q ss_pred ------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCch
Q 011535 97 ------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (483)
Q Consensus 97 ------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~ 170 (483)
+.+..+.....||+||||||+ .+..+++||.+. +++...+..+.. ....+..+++++|||+|++
T Consensus 83 ~id~~~~~v~~~~~~~~yd~LVlATG~-~~~~p~i~G~~~--v~~~~~~~~~~~-------~~~~~~~~~~vvViGgG~~ 152 (377)
T PRK04965 83 DIDAEAQVVKSQGNQWQYDKLVLATGA-SAFVPPIPGREL--MLTLNSQQEYRA-------AETQLRDAQRVLVVGGGLI 152 (377)
T ss_pred EEECCCCEEEECCeEEeCCEEEECCCC-CCCCCCCCCCce--EEEECCHHHHHH-------HHHHhhcCCeEEEECCCHH
Confidence 124444444579999999999 577778888653 444332221100 0001124689999999999
Q ss_pred HHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHH
Q 011535 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (483)
Q Consensus 171 g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (483)
|+|+|..|.+ . ..+|+++.+.+.+...+..
T Consensus 153 g~e~A~~L~~--------------------~-g~~Vtlv~~~~~~l~~~~~----------------------------- 182 (377)
T PRK04965 153 GTELAMDLCR--------------------A-GKAVTLVDNAASLLASLMP----------------------------- 182 (377)
T ss_pred HHHHHHHHHh--------------------c-CCeEEEEecCCcccchhCC-----------------------------
Confidence 9999999985 2 3579999988654221111
Q ss_pred HhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCce
Q 011535 251 EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEF 330 (483)
Q Consensus 251 ~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~ 330 (483)
+.....+.+.+. +.||+++++..+.++. . +++.+ .+.+. ++
T Consensus 183 ----~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~-~~~~~-~v~~~------------------~g 223 (377)
T PRK04965 183 ----PEVSSRLQHRLT-------------EMGVHLLLKSQLQGLE--K-TDSGI-RATLD------------------SG 223 (377)
T ss_pred ----HHHHHHHHHHHH-------------hCCCEEEECCeEEEEE--c-cCCEE-EEEEc------------------CC
Confidence 111222333333 6689999999999987 3 22221 22221 22
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAEET 407 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g~~~ 407 (483)
++++||+||+|+|++|++ .+....|+..+ +| +.+|++ ++|+.|+|||+|||+..+ .+.+..|+.||+.+
T Consensus 224 ~~i~~D~vI~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~ 295 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNT----ALARRAGLAVN-RG-IVVDSY--LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMAL 295 (377)
T ss_pred cEEECCEEEECcCCCcch----HHHHHCCCCcC-CC-EEECCC--cccCCCCEEEeeecEeECCceeehHHHHHHHHHHH
Confidence 479999999999999976 34456677765 46 788887 779999999999998532 22344588999999
Q ss_pred HHHHHH
Q 011535 408 VASISE 413 (483)
Q Consensus 408 a~~I~~ 413 (483)
|.||..
T Consensus 296 a~n~~g 301 (377)
T PRK04965 296 AKNLLG 301 (377)
T ss_pred HHHhcC
Confidence 988864
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=259.82 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=193.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecC--------CCCCC-ceecccCCCCC------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL--------PTPFG-LVRSGVAPDHP------------------ 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~--------~~~gg-l~~~g~~p~~~------------------ 69 (483)
..++|+||||||+|+.||..+++. + .+|+|||+. ..+|| ++++|+.|...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 458999999999999999999997 8 999999974 34565 35555555211
Q ss_pred ----------ChHH-----------HHHHHHHHHhc-CCeEEEeCeEE--c-eEEEecc---------eeeccCEEEEcc
Q 011535 70 ----------ETKI-----------VINQFSRVVQH-ERCSFFGNVTL--G-SSVSLSE---------LRQLYHVVVLAY 115 (483)
Q Consensus 70 ----------~~~~-----------~~~~~~~~~~~-~~v~~~~~~~v--~-~~~~~~~---------~~~~yd~vvlAt 115 (483)
..+. +...+...++. .+++++.+... + ..+.+.. ....||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 1111 11122334544 48988877643 1 1233321 135799999999
Q ss_pred CCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHH
Q 011535 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (483)
Q Consensus 116 G~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~ 195 (483)
|+ .|..+++||.+. +++..++.. +. ..+++++|||+|++|+|+|..+..
T Consensus 160 Gs-~p~~p~i~G~~~--~~~~~~~~~----------~~---~~~~~vvIIGgG~iG~E~A~~~~~--------------- 208 (486)
T TIGR01423 160 GS-WPQMLGIPGIEH--CISSNEAFY----------LD---EPPRRVLTVGGGFISVEFAGIFNA--------------- 208 (486)
T ss_pred CC-CCCCCCCCChhh--eechhhhhc----------cc---cCCCeEEEECCCHHHHHHHHHHHH---------------
Confidence 99 577788888642 333322211 01 145899999999999999987753
Q ss_pred HHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCC
Q 011535 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ 275 (483)
Q Consensus 196 ~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~ 275 (483)
|... ..+|+|+.+.+.+...|. +.+.+.+.+.|.
T Consensus 209 --l~~~-G~~Vtli~~~~~il~~~d----------------------------------~~~~~~l~~~L~--------- 242 (486)
T TIGR01423 209 --YKPR-GGKVTLCYRNNMILRGFD----------------------------------STLRKELTKQLR--------- 242 (486)
T ss_pred --hccC-CCeEEEEecCCccccccC----------------------------------HHHHHHHHHHHH---------
Confidence 1112 358999998876543222 111222233333
Q ss_pred CCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCcc
Q 011535 276 PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFD 355 (483)
Q Consensus 276 ~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~ 355 (483)
++||+++++..+.++. . +++....+.+. ++ .++++|.||+|+|++|+.. .+ ..
T Consensus 243 ----~~GI~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g--~~i~~D~vl~a~G~~Pn~~-~l-~l 295 (486)
T TIGR01423 243 ----ANGINIMTNENPAKVT--L-NADGSKHVTFE----------------SG--KTLDVDVVMMAIGRVPRTQ-TL-QL 295 (486)
T ss_pred ----HcCCEEEcCCEEEEEE--E-cCCceEEEEEc----------------CC--CEEEcCEEEEeeCCCcCcc-cC-Cc
Confidence 6789999999999886 3 12222223221 12 3799999999999999872 11 23
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+..|+.++++|+|.+|++ ++|+.|+|||+|||+.++.... .|++||+.+|+||+.
T Consensus 296 ~~~gl~~~~~G~I~Vd~~--l~Ts~~~IyA~GDv~~~~~l~~-~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 296 DKVGVELTKKGAIQVDEF--SRTNVPNIYAIGDVTDRVMLTP-VAINEGAAFVDTVFG 350 (486)
T ss_pred hhhCceECCCCCEecCCC--CcCCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHhC
Confidence 567888888999999998 6799999999999987665555 799999999999964
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=279.15 Aligned_cols=319 Identities=14% Similarity=0.129 Sum_probs=213.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCC-Cce-ecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPF-GLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~g-gl~-~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+++|||||+|+||+.+|..|.++. ++++|+||++.++++ ... .+.... +...+++.....++++..+++++.++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~-~~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFS-HHTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHc-CCCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 468999999999999999998764 458999999998753 211 111112 223445544455667778999998865
Q ss_pred Ec------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 95 v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
+. +.+.+.++. ..||+||||||+ .|..+++||.+..+++..+.+.....-. .....+++++|||+
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~l~-------~~~~~~k~vvVIGg 153 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGS-YPWIPPIKGSETQDCFVYRTIEDLNAIE-------ACARRSKRGAVVGG 153 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHH-------HHHhcCCeEEEECC
Confidence 42 224444443 579999999999 5777889998877776543322111000 00114689999999
Q ss_pred CchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCC
Q 011535 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (483)
Q Consensus 168 G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~ 247 (483)
|.+|+|+|..|.+ .+. +|+++.+.+.+......
T Consensus 154 G~iGlE~A~~L~~--------------------~G~-~VtvVe~~~~ll~~~ld-------------------------- 186 (847)
T PRK14989 154 GLLGLEAAGALKN--------------------LGV-ETHVIEFAPMLMAEQLD-------------------------- 186 (847)
T ss_pred CHHHHHHHHHHHH--------------------cCC-eEEEEeccccchhhhcC--------------------------
Confidence 9999999999986 444 69999887653211100
Q ss_pred cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccC
Q 011535 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (483)
Q Consensus 248 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~ 327 (483)
+.....+.+.|. ++||+++++..+.++. .+.++.+..+.+. +
T Consensus 187 -------~~~~~~l~~~L~-------------~~GV~v~~~~~v~~I~--~~~~~~~~~v~~~----------------d 228 (847)
T PRK14989 187 -------QMGGEQLRRKIE-------------SMGVRVHTSKNTLEIV--QEGVEARKTMRFA----------------D 228 (847)
T ss_pred -------HHHHHHHHHHHH-------------HCCCEEEcCCeEEEEE--ecCCCceEEEEEC----------------C
Confidence 111122223333 6799999999999997 3112333333332 1
Q ss_pred CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHH
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCA 404 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g 404 (483)
| +++++|+||+|+|++|++ .+....|+.++++|.|.||++ ++|+.|+|||+|||+..+ .+.+..+..+|
T Consensus 229 G--~~i~~D~Vv~A~G~rPn~----~L~~~~Gl~~~~~G~I~VD~~--l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a 300 (847)
T PRK14989 229 G--SELEVDFIVFSTGIRPQD----KLATQCGLAVAPRGGIVINDS--CQTSDPDIYAIGECASWNNRVFGLVAPGYKMA 300 (847)
T ss_pred C--CEEEcCEEEECCCcccCc----hHHhhcCccCCCCCcEEECCC--CcCCCCCEEEeecceeEcCcccccHHHHHHHH
Confidence 2 379999999999999987 355677888888999999987 789999999999998643 34455678888
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhh
Q 011535 405 EETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSA 450 (483)
Q Consensus 405 ~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (483)
+.+|.+|+. .+ ..+. .......++..++.+.++++
T Consensus 301 ~vaa~~i~g----~~-~~~~------g~~~~~~lk~~G~~v~s~G~ 335 (847)
T PRK14989 301 QVAVDHLLG----SE-NAFE------GADLSAKLKLLGVDVGGIGD 335 (847)
T ss_pred HHHHHHhcC----CC-cCCC------CcccceEEEECCcceEeccc
Confidence 888888753 21 1121 11223456666777777763
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=258.15 Aligned_cols=284 Identities=18% Similarity=0.178 Sum_probs=193.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCC----------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE---------------------------- 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~---------------------------- 70 (483)
+++|+|||+||+|+.+|..+++++ .+|+|||+.+.-|-++++|+.|....
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 368999999999999999999999 99999999864444455666553210
Q ss_pred -hHH-------H----HHHHHHHHhcCCeEEEeCeEEc-------eE--EEecce---eeccCEEEEccCCCCCCCCCCC
Q 011535 71 -TKI-------V----INQFSRVVQHERCSFFGNVTLG-------SS--VSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (483)
Q Consensus 71 -~~~-------~----~~~~~~~~~~~~v~~~~~~~v~-------~~--~~~~~~---~~~yd~vvlAtG~~~~~~~~ip 126 (483)
.+. + ...+.+.++..+++++.+.... .. +...++ ...||+||||||+ .|..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs-~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA-SPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC-CCCCCCCC
Confidence 001 1 1233445566789998875432 12 222333 3469999999999 46555544
Q ss_pred CCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 127 g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
+.+...+++..++.. .. ..+++++|||+|.+|+|+|..|.+ .+ .+|
T Consensus 158 ~~~~~~v~~~~~~~~----------~~---~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g-~~V 203 (466)
T PRK07845 158 EPDGERILTWRQLYD----------LD---ELPEHLIVVGSGVTGAEFASAYTE--------------------LG-VKV 203 (466)
T ss_pred CCCCceEEeehhhhc----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeE
Confidence 444445555443321 00 135799999999999999999875 33 579
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.+.+.+...+.. .....+.+.|. ++||+++
T Consensus 204 tli~~~~~~l~~~d~----------------------------------~~~~~l~~~L~-------------~~gV~i~ 236 (466)
T PRK07845 204 TLVSSRDRVLPGEDA----------------------------------DAAEVLEEVFA-------------RRGMTVL 236 (466)
T ss_pred EEEEcCCcCCCCCCH----------------------------------HHHHHHHHHHH-------------HCCcEEE
Confidence 999988754322221 11112223332 6799999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G 366 (483)
++..+.++. . +++.+. +.+. +| +++++|.||+++|++|+.. .+ ..++.|+.++++|
T Consensus 237 ~~~~v~~v~--~-~~~~~~-v~~~----------------~g--~~l~~D~vl~a~G~~pn~~-~l-~l~~~gl~~~~~G 292 (466)
T PRK07845 237 KRSRAESVE--R-TGDGVV-VTLT----------------DG--RTVEGSHALMAVGSVPNTA-GL-GLEEAGVELTPSG 292 (466)
T ss_pred cCCEEEEEE--E-eCCEEE-EEEC----------------CC--cEEEecEEEEeecCCcCCC-CC-CchhhCceECCCC
Confidence 999888886 3 233221 2211 12 3799999999999999862 11 1356788888899
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++.+|++ ++|+.|+|||+|||+..+.... .|..||..++.+|+.
T Consensus 293 ~i~Vd~~--~~Ts~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 336 (466)
T PRK07845 293 HITVDRV--SRTSVPGIYAAGDCTGVLPLAS-VAAMQGRIAMYHALG 336 (466)
T ss_pred cEeECCC--cccCCCCEEEEeeccCCccchh-HHHHHHHHHHHHHcC
Confidence 9999987 7899999999999987655555 799999999999874
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=257.97 Aligned_cols=286 Identities=18% Similarity=0.267 Sum_probs=188.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCCChH-------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETK------------------------- 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~~~~------------------------- 72 (483)
.++|+||||||||++||..+++.| .+|+|||+...+||. ++.|+.|......
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 479999999999999999999999 999999986667775 5566666432110
Q ss_pred --HH-----------HHHHHHHHhcCCeEEEeCeEE--c-e--EEEecce---eeccCEEEEccCCCCCCCCCCCCCCCC
Q 011535 73 --IV-----------INQFSRVVQHERCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLI 131 (483)
Q Consensus 73 --~~-----------~~~~~~~~~~~~v~~~~~~~v--~-~--~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~ 131 (483)
++ ...+...++..+++++.+... + . .+...++ ...||+||||||+ .|. ++||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~--~ipg~~~~ 157 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS-EPT--PLPGVTID 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCC-CCC--CCCCCCCC
Confidence 00 011122334456777655421 1 1 1222232 3579999999999 343 46665433
Q ss_pred C--eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEE
Q 011535 132 G--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (483)
Q Consensus 132 ~--v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li 209 (483)
+ ++++.++.. +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++
T Consensus 158 ~~~~~~~~~~~~----------~~---~~~~~vvIIGgG~ig~E~A~~l~~--------------------~G-~~Vtli 203 (466)
T PRK06115 158 NQRIIDSTGALS----------LP---EVPKHLVVIGAGVIGLELGSVWRR--------------------LG-AQVTVV 203 (466)
T ss_pred CCeEECHHHHhC----------Cc---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEE
Confidence 3 333322211 00 146899999999999999998875 34 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecC
Q 011535 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 210 ~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
.+.+.+...+. +.....+.+.|. +.||+++++.
T Consensus 204 e~~~~il~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~ 236 (466)
T PRK06115 204 EYLDRICPGTD----------------------------------TETAKTLQKALT-------------KQGMKFKLGS 236 (466)
T ss_pred eCCCCCCCCCC----------------------------------HHHHHHHHHHHH-------------hcCCEEEECc
Confidence 98775432221 111122223332 6799999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++.+ .+.+... .+++.+++++|.||+|+|++|+. ..+. .+..++..+++|. .
T Consensus 237 ~V~~i~--~-~~~~v-~v~~~~~-------------~~g~~~~i~~D~vi~a~G~~pn~-~~l~-~~~~g~~~~~~G~-~ 296 (466)
T PRK06115 237 KVTGAT--A-GADGV-SLTLEPA-------------AGGAAETLQADYVLVAIGRRPYT-QGLG-LETVGLETDKRGM-L 296 (466)
T ss_pred EEEEEE--E-cCCeE-EEEEEEc-------------CCCceeEEEeCEEEEccCCcccc-ccCC-cccccceeCCCCE-E
Confidence 999997 3 22222 2222210 12344589999999999999986 2222 2455777777774 5
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++++ ++|+.|+|||+|||+.++.... .|..||+.+|+||+.
T Consensus 297 vd~~--~~Ts~~~IyA~GD~~~~~~la~-~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 297 ANDH--HRTSVPGVWVIGDVTSGPMLAH-KAEDEAVACIERIAG 337 (466)
T ss_pred ECCC--eecCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 6665 7899999999999988776555 799999999999975
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=262.62 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=182.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCC-ChHHHHHH-HHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP-ETKIVINQ-FSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~ 94 (483)
++|+|||||+||++||..|++.+++.+|+|||+++.++ ....++ ..+.. ..++.... ...+..+.+++++.+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~ 80 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHE 80 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCE
Confidence 58999999999999999999887789999999997643 111111 11111 11222211 23344556899887655
Q ss_pred Ec------eEEEecce------eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 95 LG------SSVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 95 v~------~~~~~~~~------~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
+. +.+.+.+. ...||+||||||+ .++.++++ .+++++...+.... ...++ -.. ..++++
T Consensus 81 V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs-~~~~~~~~---~~~~~~~~~~~~~~-~l~~~---l~~-~~~~~v 151 (438)
T PRK13512 81 VIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA-SANSLGFE---SDITFTLRNLEDTD-AIDQF---IKA-NQVDKA 151 (438)
T ss_pred EEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC-CCCCCCCC---CCCeEEecCHHHHH-HHHHH---Hhh-cCCCEE
Confidence 42 22333321 2369999999999 45554443 33454433221100 00000 000 135899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ .+|+++.+.+.+...+.
T Consensus 152 vViGgG~ig~E~A~~l~~--------------------~g-~~Vtli~~~~~l~~~~d---------------------- 188 (438)
T PRK13512 152 LVVGAGYISLEVLENLYE--------------------RG-LHPTLIHRSDKINKLMD---------------------- 188 (438)
T ss_pred EEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecccccchhcC----------------------
Confidence 999999999999999985 34 47999998875432111
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
+...+.+.+.|. ++||+++++..+.++. . . .+++.
T Consensus 189 ------------~~~~~~l~~~l~-------------~~gI~i~~~~~v~~i~--~---~---~v~~~------------ 223 (438)
T PRK13512 189 ------------ADMNQPILDELD-------------KREIPYRLNEEIDAIN--G---N---EVTFK------------ 223 (438)
T ss_pred ------------HHHHHHHHHHHH-------------hcCCEEEECCeEEEEe--C---C---EEEEC------------
Confidence 111222223332 6799999999988885 2 1 23321
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC-------c-
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------T- 394 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-------~- 394 (483)
++ +++++|.|++|+|++|+. ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+..+ .
T Consensus 224 ----~g--~~~~~D~vl~a~G~~pn~----~~l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~ 291 (438)
T PRK13512 224 ----SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDDKGFIPVNDK--FETNVPNIYAIGDIITSHYRHVDLPAS 291 (438)
T ss_pred ----CC--CEEEeCEEEECcCCCcCh----HHHHhcCcccCCCCcEEECCC--cccCCCCEEEeeeeEEeeeccCCCcee
Confidence 12 368999999999999986 355677888888899999987 779999999999997421 1
Q ss_pred -chhHhhHHHHHHHHHHHHH
Q 011535 395 -GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 -~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|.++|+.+|+||..
T Consensus 292 ~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 292 VPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred cccchHHHHHHHHHHHHhcC
Confidence 1122477888888888853
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=267.15 Aligned_cols=319 Identities=20% Similarity=0.204 Sum_probs=220.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC---------------------------C-CCCceecccCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP---------------------------T-PFGLVRSGVAPD 67 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~---------------------------~-~ggl~~~g~~p~ 67 (483)
+.+.++|+|||||||||+||.+|++.| ++|++||+.+ . +||++.||+ |
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p- 455 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T- 455 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-
Confidence 457899999999999999999999999 9999999852 2 789999999 4
Q ss_pred CCChHHHHHHHHHHHhc-CCeEEEeCeEEceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecC
Q 011535 68 HPETKIVINQFSRVVQH-ERCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG 145 (483)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~ 145 (483)
+..+++....+...+.. .+++|+.|+.++.+++.++.. ..||+|+||||++.++.+++||.+.++|+++.+|....+.
T Consensus 456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~ 535 (1028)
T PRK06567 456 VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS 535 (1028)
T ss_pred ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence 44556666555555443 468888899999998888764 4699999999997799999999999999999997765432
Q ss_pred CCCC-CCCCCCCCCCCeEEEEcCCchHHHHHHHHhcC-------------Cc--cccccccchHHHHHHhcCCc------
Q 011535 146 HPDG-KNLSPDLKSTDTAVILGQGNVALDVARILLRP-------------TE--ELATTDIASYAWTALEGSSI------ 203 (483)
Q Consensus 146 ~~~~-~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~-------------~~--~l~~~di~~~~~~~l~~~~~------ 203 (483)
...+ .....++..+++|||||||++|+|+|+..... .. .....+|+...+..+++.+.
T Consensus 536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred cccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccch
Confidence 1111 01112233468999999999999999955430 01 11234566655555544211
Q ss_pred --------cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc---HHHhhccHHHHHHHHHHHHHHHhc
Q 011535 204 --------RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD---EEEMKNSRIQRRVYELLSKAAASA 272 (483)
Q Consensus 204 --------~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~l~~~~~~~ 272 (483)
..|++++|+...+ +|+. .++. .+++
T Consensus 616 v~~l~~~~G~VtIvYRr~~~e----------------------------mpA~~~~~eEv---------~~A~------- 651 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQD----------------------------SPAYKLNHEEL---------IYAL------- 651 (1028)
T ss_pred hhhhhccCCceEEEecCChhh----------------------------CCCCCCCHHHH---------HHHH-------
Confidence 1188888887544 2331 1111 1111
Q ss_pred CCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeee-----eC--CC----CCceeecc-CCceEEEecCeEEE
Q 011535 273 SSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-----KG--GG----PGKQYAVG-TGEFEDLDCGMVLK 340 (483)
Q Consensus 273 ~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l-----~~--~~----~g~~~~~~-~g~~~~i~~D~vi~ 340 (483)
+.||.++++..|.++. .|++|++.++++..... .+ +. .|+..+.+ .++..+|+||.||.
T Consensus 652 -------eEGV~f~~~~~P~~i~--~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~ 722 (1028)
T PRK06567 652 -------ALGVDFKENMQPLRIN--VDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIM 722 (1028)
T ss_pred -------HcCcEEEecCCcEEEE--ecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEE
Confidence 7899999999999998 54579999999987652 11 00 12222222 23446899999999
Q ss_pred eeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 341 SIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 341 a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
|+|..|++. ++. . .+ . .-++.+++|+- .++ .||++|+.++.+|.++|...+
T Consensus 723 A~G~~~~~~----~~~-------~--~~----s--~~~d~~~~f~G--------tvv-~A~as~k~~~~~i~~~l~~~~ 773 (1028)
T PRK06567 723 AIGIENNTQ----FDE-------D--KY----S--YFGDCNPKYSG--------SVV-KALASSKEGYDAINKKLINNN 773 (1028)
T ss_pred ecccCCccc----ccc-------c--cc----c--cccCCCCcccc--------HHH-HHHHHHHhHHHHHHHHHhhCC
Confidence 999999872 210 0 00 0 22445666663 455 899999999999999998763
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=256.05 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=190.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC----------------------------Ch
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP----------------------------ET 71 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~----------------------------~~ 71 (483)
++|+||||||||++||..+++.+ .+|+|||+.+..|.++..|+.|... ..
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNG--KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 38999999999999999999999 9999999987555555555555211 11
Q ss_pred HHHH-----------HHHHHHHhcCCeEEEeCeEE---ceE--EEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCe
Q 011535 72 KIVI-----------NQFSRVVQHERCSFFGNVTL---GSS--VSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (483)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~v~~~~~~~v---~~~--~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v 133 (483)
..+. ......++..+++++.+... ... +..++. ...||+||||||+ .|+.+++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs-~p~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGS-EPTELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCC-CCCCCCCCCCCCCeE
Confidence 1111 11223345567888776543 112 222222 3569999999999 466666777655555
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+++.+.... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+
T Consensus 158 ~~~~~~~~~----------~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~ 203 (458)
T PRK06912 158 INSKHAMSL----------P---SIPSSLLIVGGGVIGCEFASIYSR--------------------LG-TKVTIVEMAP 203 (458)
T ss_pred EcchHHhCc----------c---ccCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCC
Confidence 554332211 0 135799999999999999998875 34 4799999886
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +...+.+.+.|. ++||++++++.+.+
T Consensus 204 ~ll~~~d----------------------------------~e~~~~l~~~L~-------------~~GI~i~~~~~V~~ 236 (458)
T PRK06912 204 QLLPGED----------------------------------EDIAHILREKLE-------------NDGVKIFTGAALKG 236 (458)
T ss_pred CcCcccc----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEEE
Confidence 5432111 111222223333 67999999999988
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . ++. .+.+.. +++..++++|.||+|+|.+|+. ..+ ..+..|+..+++| +.+|++
T Consensus 237 i~--~--~~~--~v~~~~---------------~g~~~~i~~D~vivA~G~~p~~-~~l-~l~~~gv~~~~~g-i~Vd~~ 292 (458)
T PRK06912 237 LN--S--YKK--QALFEY---------------EGSIQEVNAEFVLVSVGRKPRV-QQL-NLEKAGVQFSNKG-ISVNEH 292 (458)
T ss_pred EE--E--cCC--EEEEEE---------------CCceEEEEeCEEEEecCCccCC-CCC-CchhcCceecCCC-EEeCCC
Confidence 86 3 222 122221 2333579999999999999975 222 2345677777777 888887
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||..++.... .|+.+|+.+|.+|..
T Consensus 293 --~~ts~~~VyA~GD~~~~~~la~-~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 --MQTNVPHIYACGDVIGGIQLAH-VAFHEGTTAALHASG 329 (458)
T ss_pred --eecCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 7799999999999987666555 799999999999863
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=257.58 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=187.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCCh--HHHHHHHH-----------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--KIVINQFS----------------- 79 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~--~~~~~~~~----------------- 79 (483)
.++|+||||||||++||..|++.+ .+|+|||+....|..+..|+.|..... .++...+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 479999999999999999999999 999999997555556667776642211 01111111
Q ss_pred ------------------HHHhcCCeEEEeCeEE---ceEEEe--cce---eeccCEEEEccCCCCCCCCCCCCCCC-CC
Q 011535 80 ------------------RVVQHERCSFFGNVTL---GSSVSL--SEL---RQLYHVVVLAYGAESDRALGIPGEDL-IG 132 (483)
Q Consensus 80 ------------------~~~~~~~v~~~~~~~v---~~~~~~--~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~-~~ 132 (483)
..++..+++++.+... ...+.+ .++ ...||+||||||+. |+. +||.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~-p~~--~pg~~~~~~ 158 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSS-TRL--LPGTSLSEN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCC-CCC--CCCCCCCCc
Confidence 1112234555443211 112222 222 34699999999994 543 355442 23
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
+++..+... .+ ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.
T Consensus 159 v~~~~~~~~------------~~-~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtlv~~~ 204 (466)
T PRK07818 159 VVTYEEQIL------------SR-ELPKSIVIAGAGAIGMEFAYVLKN--------------------YG-VDVTIVEFL 204 (466)
T ss_pred EEchHHHhc------------cc-cCCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecC
Confidence 443322110 00 135799999999999999999885 34 479999987
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+. +.....+.+.|. ++||++++++.+.
T Consensus 205 ~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~v~ 237 (466)
T PRK07818 205 DRALPNED----------------------------------AEVSKEIAKQYK-------------KLGVKILTGTKVE 237 (466)
T ss_pred CCcCCccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEE
Confidence 65432211 111222223333 6799999999999
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . ++....+.+.. .+|+..++++|.||+|+|++|+.. .+ ..+..|+.++++|++.+|+
T Consensus 238 ~i~--~--~~~~~~v~~~~--------------~~g~~~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~g~i~vd~ 297 (466)
T PRK07818 238 SID--D--NGSKVTVTVSK--------------KDGKAQELEADKVLQAIGFAPRVE-GY-GLEKTGVALTDRGAIAIDD 297 (466)
T ss_pred EEE--E--eCCeEEEEEEe--------------cCCCeEEEEeCEEEECcCcccCCC-CC-CchhcCcEECCCCcEeeCC
Confidence 997 3 22222233321 034445899999999999999862 11 1356788888889999998
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+ ++|+.|+|||+|||+.++.... .|+.+|+.+|.+|+.
T Consensus 298 ~--~~Ts~p~IyAiGD~~~~~~l~~-~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 Y--MRTNVPHIYAIGDVTAKLQLAH-VAEAQGVVAAETIAG 335 (466)
T ss_pred C--cccCCCCEEEEeecCCCcccHh-HHHHHHHHHHHHHcC
Confidence 8 7899999999999986655555 799999999999964
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=255.38 Aligned_cols=285 Identities=20% Similarity=0.268 Sum_probs=188.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCC--------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPD--------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~--------------------------~~~ 70 (483)
..++|+||||||||++||..|++.+ .+|+|||+ ..+||.. ..|+.|. ...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 3479999999999999999999999 99999999 5566643 3333331 112
Q ss_pred hHHHHHHHH------------HHHhcCCeEEEeCeEE---ceEEEecceeeccCEEEEccCCCCCCCCCCCCCC---CCC
Q 011535 71 TKIVINQFS------------RVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIG 132 (483)
Q Consensus 71 ~~~~~~~~~------------~~~~~~~v~~~~~~~v---~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~ 132 (483)
.+++..... ..+...+++++.+... ...+.+......||+||||||+. .|.+||.+ ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 223322222 2233446776655332 12233333345799999999994 44667753 223
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
+++..+... +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.
T Consensus 156 ~~~~~~~~~----------~~---~~~k~v~VIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~ 201 (460)
T PRK06292 156 LLTSDDAFE----------LD---KLPKSLAVIGGGVIGLELGQALSR--------------------LG-VKVTVFERG 201 (460)
T ss_pred EECchHHhC----------cc---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecC
Confidence 333322211 00 146899999999999999999885 34 469999988
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+. +.....+.+.|. ++ |+++++..+.
T Consensus 202 ~~~l~~~d----------------------------------~~~~~~~~~~l~-------------~~-I~i~~~~~v~ 233 (460)
T PRK06292 202 DRILPLED----------------------------------PEVSKQAQKILS-------------KE-FKIKLGAKVT 233 (460)
T ss_pred CCcCcchh----------------------------------HHHHHHHHHHHh-------------hc-cEEEcCCEEE
Confidence 75432111 111112222232 55 9999999999
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . ++. ..+++.. .+++..++++|.||+|+|++|+.- .+ ..+..|+..+++|++.+|+
T Consensus 234 ~i~--~--~~~-~~v~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~~-~l-~l~~~g~~~~~~g~i~vd~ 292 (460)
T PRK06292 234 SVE--K--SGD-EKVEELE--------------KGGKTETIEADYVLVATGRRPNTD-GL-GLENTGIELDERGRPVVDE 292 (460)
T ss_pred EEE--E--cCC-ceEEEEE--------------cCCceEEEEeCEEEEccCCccCCC-CC-CcHhhCCEecCCCcEeECC
Confidence 987 3 222 2233211 124445899999999999999862 11 2356688888899999999
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+ ++|+.|+|||+|||+..+.... .|+.||+.+|.+|...
T Consensus 293 ~--~~ts~~~IyA~GD~~~~~~~~~-~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 293 H--TQTSVPGIYAAGDVNGKPPLLH-EAADEGRIAAENAAGD 331 (460)
T ss_pred C--cccCCCCEEEEEecCCCccchh-HHHHHHHHHHHHhcCC
Confidence 8 7899999999999987665555 7999999999999753
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=256.74 Aligned_cols=283 Identities=12% Similarity=0.181 Sum_probs=189.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC-------------------------ChH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-------------------------ETK 72 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~-------------------------~~~ 72 (483)
..++|+||||||||++||..+++.| .+|+|||+...-|..+.+|+.|... ...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 4579999999999999999999999 9999999975334356666655321 001
Q ss_pred H-------H----HHHHHHHHhcCCeEEEeCeEE--c-eEEE--------------------e--------cce-eeccC
Q 011535 73 I-------V----INQFSRVVQHERCSFFGNVTL--G-SSVS--------------------L--------SEL-RQLYH 109 (483)
Q Consensus 73 ~-------~----~~~~~~~~~~~~v~~~~~~~v--~-~~~~--------------------~--------~~~-~~~yd 109 (483)
. + ...+.+.++..+++++.+... + ..+. + +++ ...||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 1 1 122334456678888777642 1 1111 1 222 35799
Q ss_pred EEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccc
Q 011535 110 VVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189 (483)
Q Consensus 110 ~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~d 189 (483)
+||||||+ .|..|++||.+ .++++.++.. +..+++|+|||+|.+|+|+|..|.+
T Consensus 205 ~lVIATGS-~P~~P~IpG~~--~v~ts~~~~~--------------l~~pk~VvIIGgG~iGlE~A~~l~~--------- 258 (561)
T PTZ00058 205 NILIAVGN-KPIFPDVKGKE--FTISSDDFFK--------------IKEAKRIGIAGSGYIAVELINVVNR--------- 258 (561)
T ss_pred EEEEecCC-CCCCCCCCCce--eEEEHHHHhh--------------ccCCCEEEEECCcHHHHHHHHHHHH---------
Confidence 99999999 57778888864 2444433221 1136899999999999999999885
Q ss_pred cchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHH
Q 011535 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAA 269 (483)
Q Consensus 190 i~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~ 269 (483)
.+ .+|+++.+++.+...+. .+ ....+.+.|.
T Consensus 259 -----------~G-~~Vtli~~~~~il~~~d-~~---------------------------------i~~~l~~~L~--- 289 (561)
T PTZ00058 259 -----------LG-AESYIFARGNRLLRKFD-ET---------------------------------IINELENDMK--- 289 (561)
T ss_pred -----------cC-CcEEEEEecccccccCC-HH---------------------------------HHHHHHHHHH---
Confidence 34 57999999875433222 11 1112223332
Q ss_pred HhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC
Q 011535 270 ASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV 349 (483)
Q Consensus 270 ~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~ 349 (483)
++||+++++..+.++. .++++.+. +.+ ++..+++++|.|++|+|++|+.
T Consensus 290 ----------~~GV~i~~~~~V~~I~--~~~~~~v~-v~~-----------------~~~~~~i~aD~VlvA~Gr~Pn~- 338 (561)
T PTZ00058 290 ----------KNNINIITHANVEEIE--KVKEKNLT-IYL-----------------SDGRKYEHFDYVIYCVGRSPNT- 338 (561)
T ss_pred ----------HCCCEEEeCCEEEEEE--ecCCCcEE-EEE-----------------CCCCEEEECCEEEECcCCCCCc-
Confidence 6799999999999987 31122221 111 1222479999999999999986
Q ss_pred CCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC----------------------------------CCcc
Q 011535 350 NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR----------------------------------GPTG 395 (483)
Q Consensus 350 ~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~----------------------------------g~~~ 395 (483)
..+.+ +..++. +++|+|.+|++ ++|+.|+|||+|||+. ++.-
T Consensus 339 ~~L~l-~~~~~~-~~~G~I~VDe~--lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l 414 (561)
T PTZ00058 339 EDLNL-KALNIK-TPKGYIKVDDN--QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQL 414 (561)
T ss_pred cccCc-ccccee-cCCCeEEECcC--CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCc
Confidence 22211 223343 46899999998 7899999999999986 2333
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 011535 396 IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~ 413 (483)
. ..|..+|+.+|.||..
T Consensus 415 a-~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 415 T-PVAINAGRLLADRLFG 431 (561)
T ss_pred h-HHHHHHHHHHHHHHhC
Confidence 3 3799999999999964
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=255.31 Aligned_cols=280 Identities=14% Similarity=0.161 Sum_probs=188.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC--------------------------ChHH
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------------------------ETKI 73 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~--------------------------~~~~ 73 (483)
++|+||||||+|.+||..+ .| .+|+|||+...-|.+++.|+.|... ..++
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--AD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CC--CeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHH
Confidence 6899999999999998763 47 9999999976555566677666321 1111
Q ss_pred H-------HHHH-----HHH-HhcCCeEEEeCeEE---ceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 74 V-------INQF-----SRV-VQHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 74 ~-------~~~~-----~~~-~~~~~v~~~~~~~v---~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
+ ...+ ... ++..+++++.+... .+.+.+.++ ...||+||||||+ .|+.|++||.+...+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs-~p~~p~i~g~~~~~~~~~ 156 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS-RPVIPPVIADSGVRYHTS 156 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC-CCCCCCCCCcCCccEEch
Confidence 1 1111 112 44567787776554 233555443 3579999999999 577788888654444443
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 157 ~~~~~l----------~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~~Vtli~~~~~ll 202 (451)
T PRK07846 157 DTIMRL----------P---ELPESLVIVGGGFIAAEFAHVFSA--------------------LG-VRVTVVNRSGRLL 202 (451)
T ss_pred HHHhhh----------h---hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCccc
Confidence 332210 0 135799999999999999999985 34 5799999987543
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..+. ++ ..+.+.+.+ +.+|+++++..+.++.
T Consensus 203 ~~~d-~~---------------------------------~~~~l~~l~--------------~~~v~i~~~~~v~~i~- 233 (451)
T PRK07846 203 RHLD-DD---------------------------------ISERFTELA--------------SKRWDVRLGRNVVGVS- 233 (451)
T ss_pred cccC-HH---------------------------------HHHHHHHHH--------------hcCeEEEeCCEEEEEE-
Confidence 2211 11 111111111 4469999999888886
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~ 376 (483)
. +++.+ .+.+ .++.+++||.||+|+|++|+. ..+. .+..++.++++|++.+|++ +
T Consensus 234 -~-~~~~v-~v~~------------------~~g~~i~~D~vl~a~G~~pn~-~~l~-~~~~gl~~~~~G~i~Vd~~--~ 288 (451)
T PRK07846 234 -Q-DGSGV-TLRL------------------DDGSTVEADVLLVATGRVPNG-DLLD-AAAAGVDVDEDGRVVVDEY--Q 288 (451)
T ss_pred -E-cCCEE-EEEE------------------CCCcEeecCEEEEEECCccCc-cccC-chhcCceECCCCcEeECCC--c
Confidence 3 22222 1221 112379999999999999986 1111 2456888888999999998 7
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++|+|||+|||+..+.-.. .|.+||+.+|+||+.
T Consensus 289 ~Ts~p~IyA~GD~~~~~~l~~-~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 289 RTSAEGVFALGDVSSPYQLKH-VANHEARVVQHNLLH 324 (451)
T ss_pred ccCCCCEEEEeecCCCccChh-HHHHHHHHHHHHHcC
Confidence 799999999999987554444 799999999999974
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=275.28 Aligned_cols=316 Identities=19% Similarity=0.197 Sum_probs=212.6
Q ss_pred EEEECccHHHHHHHHHHHhcC-CCCeEEEEecCCCCC-Cc-eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--
Q 011535 22 VCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPF-GL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~-~~~~v~lie~~~~~g-gl-~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-- 96 (483)
|||||+|+||+++|..|.+.. ++++|+||++.++++ .. ..+.+..+....+++.....++++..+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999998876 568999999998853 21 1112334444555665555667777899999986552
Q ss_pred ----eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchH
Q 011535 97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 97 ----~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g 171 (483)
+.+.+.++ ...||+||||||+ .++.+++||.+.++++..+.+..... . ......+++++|||+|.+|
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~-i------~~~~~~~k~vvVVGgG~~G 152 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGS-YPFILPIPGADKKGVYVFRTIEDLDA-I------MAMAQRFKKAAVIGGGLLG 152 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCC-CcCCCCCCCCCCCCEEEeCCHHHHHH-H------HHHhhcCCeEEEECCCHHH
Confidence 23444444 3579999999999 57888899988888876543321100 0 0001246899999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|..|.+ .+ .+|+++.+.+.+......
T Consensus 153 lE~A~~L~~--------------------~G-~~Vtvv~~~~~ll~~~ld------------------------------ 181 (785)
T TIGR02374 153 LEAAVGLQN--------------------LG-MDVSVIHHAPGLMAKQLD------------------------------ 181 (785)
T ss_pred HHHHHHHHh--------------------cC-CeEEEEccCCchhhhhcC------------------------------
Confidence 999999985 34 479999887653211000
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceE
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~ 331 (483)
+.....+.+.+. +.||+++++..+.++. + ++.+..+++.+ | +
T Consensus 182 ---~~~~~~l~~~l~-------------~~GV~v~~~~~v~~i~--~--~~~~~~v~~~d----------------G--~ 223 (785)
T TIGR02374 182 ---QTAGRLLQRELE-------------QKGLTFLLEKDTVEIV--G--ATKADRIRFKD----------------G--S 223 (785)
T ss_pred ---HHHHHHHHHHHH-------------HcCCEEEeCCceEEEE--c--CCceEEEEECC----------------C--C
Confidence 111112222332 6799999999999997 4 45555554432 2 3
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAEETV 408 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g~~~a 408 (483)
++++|+||+++|++|++ .+....|+..+ |.+.+|++ ++|+.|+|||+|||+..+ .+.+..+..||+.+|
T Consensus 224 ~i~~D~Vi~a~G~~Pn~----~la~~~gl~~~--ggI~Vd~~--~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA 295 (785)
T TIGR02374 224 SLEADLIVMAAGIRPND----ELAVSAGIKVN--RGIIVNDS--MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLA 295 (785)
T ss_pred EEEcCEEEECCCCCcCc----HHHHhcCCccC--CCEEECCC--cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHH
Confidence 79999999999999987 35556677665 55788887 789999999999998633 345556888999999
Q ss_pred HHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHH
Q 011535 409 ASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWE 452 (483)
Q Consensus 409 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~ 452 (483)
.||.. .+...+.. ......++..++.+++.++..
T Consensus 296 ~ni~g----~~~~~~~~------~~~~~~lk~~g~~v~s~G~~~ 329 (785)
T TIGR02374 296 DHICG----VECEEYEG------SDLSAKLKLLGVDVWSAGDAQ 329 (785)
T ss_pred HHhcC----CCCcCCCC------CccceEEEECCcceEecccCC
Confidence 88863 22122210 112345566667777766543
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=260.53 Aligned_cols=281 Identities=19% Similarity=0.262 Sum_probs=188.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCC-------------------------C--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDH-------------------------P-- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~-------------------------~-- 69 (483)
..++|+||||||||++||..|++.| .+|+|||+. .+||. ++.|+.|.. +
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 4589999999999999999999999 999999997 55653 233333311 1
Q ss_pred ChHHHHHH------------HHHHHhcC-CeEEEeCeEEce-----EEEecce---eeccCEEEEccCCCCCCCCCCCCC
Q 011535 70 ETKIVINQ------------FSRVVQHE-RCSFFGNVTLGS-----SVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 70 ~~~~~~~~------------~~~~~~~~-~v~~~~~~~v~~-----~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
..+.+... +...+... +++++.+...-. .+...++ ...||+||||||+ .|..|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGA-SPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCC
Confidence 11222111 11223333 688877644311 2333333 3579999999999 5777788886
Q ss_pred CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEE
Q 011535 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (483)
Q Consensus 129 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~l 208 (483)
+...+++..+.. ... ..+++++|||+|++|+|+|..|.+ .+ .+|++
T Consensus 253 ~~~~~~~~~~~~------------~~~-~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtl 298 (561)
T PRK13748 253 KETPYWTSTEAL------------VSD-TIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTI 298 (561)
T ss_pred CccceEccHHHh------------hcc-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 532222222111 001 145899999999999999999985 34 57999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeec
Q 011535 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (483)
Q Consensus 209 i~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 288 (483)
+.|.. ....+. +...+.+.+.|. +.||+++++
T Consensus 299 i~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gI~i~~~ 330 (561)
T PRK13748 299 LARST-LFFRED----------------------------------PAIGEAVTAAFR-------------AEGIEVLEH 330 (561)
T ss_pred EecCc-cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEcC
Confidence 98853 211111 111222223333 679999999
Q ss_pred CCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCee
Q 011535 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (483)
Q Consensus 289 ~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v 368 (483)
..+.++. . +++. +.+.. .+ .++++|.||+|+|++|+.. .+ ..+..|+..+++|+|
T Consensus 331 ~~v~~i~--~-~~~~---~~v~~---------------~~--~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~g~i 385 (561)
T PRK13748 331 TQASQVA--H-VDGE---FVLTT---------------GH--GELRADKLLVATGRAPNTR-SL-ALDAAGVTVNAQGAI 385 (561)
T ss_pred CEEEEEE--e-cCCE---EEEEe---------------cC--CeEEeCEEEEccCCCcCCC-Cc-CchhcCceECCCCCE
Confidence 9888886 3 2332 21111 11 1599999999999999872 11 235678888889999
Q ss_pred eecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 369 ~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
.+|++ ++|+.|+|||+|||+..+.... .|+.+|+.+|.+|+
T Consensus 386 ~vd~~--~~Ts~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~ 426 (561)
T PRK13748 386 VIDQG--MRTSVPHIYAAGDCTDQPQFVY-VAAAAGTRAAINMT 426 (561)
T ss_pred eECCC--cccCCCCEEEeeecCCCccchh-HHHHHHHHHHHHHc
Confidence 99998 7899999999999987776665 79999999999996
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=253.82 Aligned_cols=284 Identities=19% Similarity=0.219 Sum_probs=185.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCC--------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------E 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~--------------------------~ 70 (483)
..++|+||||||||++||..|++.| .+|+|||+. .+||. ..+|+.|.+. .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 3589999999999999999999999 999999996 45553 4555555321 1
Q ss_pred hHH-------HHH----HHHHHHhcCCeEEEeCeEEc------------eEEEecce---eeccCEEEEccCCCCCCCCC
Q 011535 71 TKI-------VIN----QFSRVVQHERCSFFGNVTLG------------SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 71 ~~~-------~~~----~~~~~~~~~~v~~~~~~~v~------------~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ 124 (483)
... +.. ....++++.+++++.+.... ..+...++ ...||+||||||+ .|..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs-~p~~~- 157 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS-RPVEL- 157 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-CCCCC-
Confidence 111 111 22344566789988886431 12333333 3469999999999 45433
Q ss_pred CCCCC--CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 125 IPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 125 ipg~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|+.. ...++++.+... +. ..+++++|||+|++|+|+|..|.+ .+
T Consensus 158 -p~~~~~~~~~~~~~~~~~----------~~---~~~~~vvIIGgG~~G~E~A~~l~~--------------------~g 203 (472)
T PRK05976 158 -PGLPFDGEYVISSDEALS----------LE---TLPKSLVIVGGGVIGLEWASMLAD--------------------FG 203 (472)
T ss_pred -CCCCCCCceEEcchHhhC----------cc---ccCCEEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 3332 222333332221 00 135899999999999999999985 34
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|.+.+...+. +.+...+.+.|. ++|
T Consensus 204 -~~Vtli~~~~~il~~~~----------------------------------~~~~~~l~~~l~-------------~~g 235 (472)
T PRK05976 204 -VEVTVVEAADRILPTED----------------------------------AELSKEVARLLK-------------KLG 235 (472)
T ss_pred -CeEEEEEecCccCCcCC----------------------------------HHHHHHHHHHHH-------------hcC
Confidence 57999998875432111 111122223332 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~ 362 (483)
|++++++.+.++. .+.++.+..+.. .+|+.+++++|.||+|+|.+|+. ..+. .+..++..
T Consensus 236 I~i~~~~~v~~i~--~~~~~~~~~~~~----------------~~g~~~~i~~D~vi~a~G~~p~~-~~l~-l~~~~~~~ 295 (472)
T PRK05976 236 VRVVTGAKVLGLT--LKKDGGVLIVAE----------------HNGEEKTLEADKVLVSVGRRPNT-EGIG-LENTDIDV 295 (472)
T ss_pred CEEEeCcEEEEEE--EecCCCEEEEEE----------------eCCceEEEEeCEEEEeeCCccCC-CCCC-chhcCcee
Confidence 9999999888886 201232221111 13444579999999999999976 2221 13345544
Q ss_pred CCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 363 ~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
++|.+.++++ ++|+.|+|||+|||+.++.... .|+.+|..+|.+|.
T Consensus 296 -~~g~i~Vd~~--l~ts~~~IyAiGD~~~~~~~~~-~A~~~g~~aa~~i~ 341 (472)
T PRK05976 296 -EGGFIQIDDF--CQTKERHIYAIGDVIGEPQLAH-VAMAEGEMAAEHIA 341 (472)
T ss_pred -cCCEEEECCC--cccCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHc
Confidence 4689999988 7799999999999987666555 79999999999985
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=251.97 Aligned_cols=282 Identities=17% Similarity=0.246 Sum_probs=186.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCC-------------------------C
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDH-------------------------P 69 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~-------------------------~ 69 (483)
....++|+||||||||++||..|++.+ .+|+|||+.. +|| +...|+.|.+ +
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERG--ARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 346789999999999999999999999 9999999874 454 2333333321 1
Q ss_pred --ChHHHHH-------HH-----HHHHhc-CCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCC
Q 011535 70 --ETKIVIN-------QF-----SRVVQH-ERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (483)
Q Consensus 70 --~~~~~~~-------~~-----~~~~~~-~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ip 126 (483)
....+.. .+ ...++. .+++++.+.... ..+++.++ ...||+||||||+ .|+.+++|
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs-~p~~p~i~ 158 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA-RPAEPPVP 158 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC-CCCCCCCC
Confidence 1112211 11 122322 378887775442 23444443 3579999999999 67888899
Q ss_pred CCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 127 g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
|.+...+++..+.. .+ +. .+++++|||+|++|+|+|..|.+ .+ .+|
T Consensus 159 G~~~~~~~~~~~~~----------~l--~~-~~~~vvViG~G~~G~E~A~~l~~--------------------~g-~~V 204 (468)
T PRK14694 159 GLAETPYLTSTSAL----------EL--DH-IPERLLVIGASVVALELAQAFAR--------------------LG-SRV 204 (468)
T ss_pred CCCCCceEcchhhh----------ch--hc-CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeE
Confidence 87543333322111 01 11 35799999999999999999885 34 579
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.+.. ....+. +.....+.+.|. ++||+++
T Consensus 205 tlv~~~~-~l~~~~----------------------------------~~~~~~l~~~l~-------------~~GI~v~ 236 (468)
T PRK14694 205 TVLARSR-VLSQED----------------------------------PAVGEAIEAAFR-------------REGIEVL 236 (468)
T ss_pred EEEECCC-CCCCCC----------------------------------HHHHHHHHHHHH-------------hCCCEEE
Confidence 9997642 211111 111222223333 6799999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G 366 (483)
++..+.++. . ++.. +.+.. .+ .++++|.||+|+|.+|+.. .+ ..+..++.. ++|
T Consensus 237 ~~~~v~~i~--~--~~~~--~~v~~---------------~~--~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~-~~G 290 (468)
T PRK14694 237 KQTQASEVD--Y--NGRE--FILET---------------NA--GTLRAEQLLVATGRTPNTE-NL-NLESIGVET-ERG 290 (468)
T ss_pred eCCEEEEEE--E--cCCE--EEEEE---------------CC--CEEEeCEEEEccCCCCCcC-CC-CchhcCccc-CCC
Confidence 999888886 3 2221 11111 11 1699999999999999872 11 124456765 579
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
++.+|++ ++|++|+|||+|||+..+..+. .|+.+|+.+|.+|+
T Consensus 291 ~i~vd~~--~~Ts~~~IyA~GD~~~~~~~~~-~A~~~G~~aa~~i~ 333 (468)
T PRK14694 291 AIRIDEH--LQTTVSGIYAAGDCTDQPQFVY-VAAAGGSRAAINMT 333 (468)
T ss_pred eEeeCCC--cccCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHhc
Confidence 9999988 7899999999999987776665 79999999999986
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=253.57 Aligned_cols=288 Identities=17% Similarity=0.224 Sum_probs=188.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec------CCCCCCc-eecccCCCCC----------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR------LPTPFGL-VRSGVAPDHP---------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~------~~~~ggl-~~~g~~p~~~---------------------- 69 (483)
.++|+||||||||++||.++++.+ .+|+|||+ ...+||. ..+++.|.+.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 579999999999999999999999 99999998 2344442 3333333210
Q ss_pred -----ChHH-------H----HHHHHHHHhcCCeEEEeCeEE-------ceEEEecc--e-eeccCEEEEccCCCCCCCC
Q 011535 70 -----ETKI-------V----INQFSRVVQHERCSFFGNVTL-------GSSVSLSE--L-RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 70 -----~~~~-------~----~~~~~~~~~~~~v~~~~~~~v-------~~~~~~~~--~-~~~yd~vvlAtG~~~~~~~ 123 (483)
.... + ...+..+++..+++++.+... ...+.+.. . ...||+||||||+ .|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs-~p~~~ 160 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS-EPRHL 160 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC-CCCCC
Confidence 0011 1 112334455567888766542 12233321 1 3579999999999 45433
Q ss_pred CCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc
Q 011535 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (483)
Q Consensus 124 ~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~ 203 (483)
+..+.+...++++.....+ . ..+++|+|||+|++|+|+|..|.+ .+
T Consensus 161 p~~~~~~~~~~~~~~~~~~------------~-~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g- 206 (475)
T PRK06327 161 PGVPFDNKIILDNTGALNF------------T-EVPKKLAVIGAGVIGLELGSVWRR--------------------LG- 206 (475)
T ss_pred CCCCCCCceEECcHHHhcc------------c-ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-
Confidence 2222222334333222110 0 145899999999999999998875 33
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceE
Q 011535 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (483)
Q Consensus 204 ~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i 283 (483)
.+|+++.|++.+...+. ++ +...+.+.|. ++||
T Consensus 207 ~~Vtli~~~~~~l~~~d-~~---------------------------------~~~~~~~~l~-------------~~gi 239 (475)
T PRK06327 207 AEVTILEALPAFLAAAD-EQ---------------------------------VAKEAAKAFT-------------KQGL 239 (475)
T ss_pred CeEEEEeCCCccCCcCC-HH---------------------------------HHHHHHHHHH-------------HcCc
Confidence 57999998875432111 11 1112223332 6789
Q ss_pred EEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccC
Q 011535 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN 363 (483)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~ 363 (483)
++++++.+.++. . +++.+ .+.+.+ .+++..++++|.||+|+|++|+. ..+ ..+..++..+
T Consensus 240 ~i~~~~~v~~i~--~-~~~~v-~v~~~~--------------~~g~~~~i~~D~vl~a~G~~p~~-~~l-~~~~~g~~~~ 299 (475)
T PRK06327 240 DIHLGVKIGEIK--T-GGKGV-SVAYTD--------------ADGEAQTLEVDKLIVSIGRVPNT-DGL-GLEAVGLKLD 299 (475)
T ss_pred EEEeCcEEEEEE--E-cCCEE-EEEEEe--------------CCCceeEEEcCEEEEccCCccCC-CCC-CcHhhCceeC
Confidence 999999999997 3 23322 233322 02343579999999999999986 211 2355678888
Q ss_pred CCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 364 IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 364 ~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|++.+|++ ++|+.|+|||+|||+.++.... .|..||..+|.+|..
T Consensus 300 ~~G~i~vd~~--~~Ts~~~VyA~GD~~~~~~~~~-~A~~~G~~aa~~i~g 346 (475)
T PRK06327 300 ERGFIPVDDH--CRTNVPNVYAIGDVVRGPMLAH-KAEEEGVAVAERIAG 346 (475)
T ss_pred CCCeEeECCC--CccCCCCEEEEEeccCCcchHH-HHHHHHHHHHHHHcC
Confidence 8999999987 7899999999999987776655 799999999999964
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=253.15 Aligned_cols=285 Identities=18% Similarity=0.240 Sum_probs=190.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCCCh--------------------------H
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET--------------------------K 72 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~~~--------------------------~ 72 (483)
++|+||||||||++||..|++.+ .+|+|||+ +.+||. ..+|+.|..... .
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 68999999999999999999999 99999999 666664 445554431100 0
Q ss_pred HH-----------HHHHHHHHhcCCeEEEeCeEEc---eEE--Eecc--eeeccCEEEEccCCCCCCCCCCC-CCCCCCe
Q 011535 73 IV-----------INQFSRVVQHERCSFFGNVTLG---SSV--SLSE--LRQLYHVVVLAYGAESDRALGIP-GEDLIGV 133 (483)
Q Consensus 73 ~~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~--~~~~--~~~~yd~vvlAtG~~~~~~~~ip-g~~~~~v 133 (483)
.+ ...+...++..+++++.+.... ..+ ...+ ....||+||||||+ .|+.+++| +.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~-~p~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGS-RPRSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCC-CCCCCCCCCCCCCceE
Confidence 00 0111233445677877765532 112 2222 23569999999998 56666665 3322224
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+++.+... + + ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|.+
T Consensus 158 ~~~~~~~~----------~--~-~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~ 203 (461)
T TIGR01350 158 ITSTGALN----------L--K-EVPESLVIIGGGVIGIEFASIFAS--------------------LG-SKVTVIEMLD 203 (461)
T ss_pred EcchHHhc----------c--c-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCC
Confidence 43332221 0 0 135799999999999999999885 34 4799999887
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +.....+.+.+. +.||++++++.+.+
T Consensus 204 ~~l~~~~----------------------------------~~~~~~~~~~l~-------------~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 204 RILPGED----------------------------------AEVSKVVAKALK-------------KKGVKILTNTKVTA 236 (461)
T ss_pred CCCCCCC----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCCEEEE
Confidence 5422111 111122223332 66899999999998
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . +++.+. ++.. .+...++++|.||+|+|++|+. .++ +.+..++..+++|++.+|++
T Consensus 237 i~--~-~~~~v~-v~~~----------------~g~~~~i~~D~vi~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~~ 294 (461)
T TIGR01350 237 VE--K-NDDQVV-YENK----------------GGETETLTGEKVLVAVGRKPNT-EGL-GLENLGVELDERGRIVVDEY 294 (461)
T ss_pred EE--E-eCCEEE-EEEe----------------CCcEEEEEeCEEEEecCCcccC-CCC-CcHhhCceECCCCcEeeCCC
Confidence 86 3 233332 2211 2333479999999999999976 221 34567888888999999987
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++|+.|+|||+|||+.++.... .|+.+|+.+|.+|...
T Consensus 295 --l~t~~~~IyaiGD~~~~~~~~~-~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 295 --MRTNVPGIYAIGDVIGGPMLAH-VASHEGIVAAENIAGK 332 (461)
T ss_pred --cccCCCCEEEeeecCCCcccHH-HHHHHHHHHHHHHcCC
Confidence 7789999999999987666555 7999999999999753
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=253.45 Aligned_cols=289 Identities=14% Similarity=0.172 Sum_probs=186.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCc--eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGL--VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl--~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..++|+|||||+||++||..|++.+++.+|+||++.+.+ |.. +...+.... ........-.+++...+++++.++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~g~~ 80 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLED-SPQLQQVLPANWWQENNVHLHSGVT 80 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCC-CccccccCCHHHHHHCCCEEEcCCE
Confidence 356899999999999999999999877899999988654 211 100010000 0000000112334556899998865
Q ss_pred E-c-----eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 95 L-G-----SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 95 v-~-----~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
+ . +.+.+.++. ..||+||||||+ .++.+++++...+++++.+.+.... .+...+..+++++|||+
T Consensus 81 V~~id~~~~~v~~~~g~~~~yd~LViATGs-~~~~~p~~~~~~~~v~~~~~~~da~-------~l~~~~~~~~~vvViGg 152 (396)
T PRK09754 81 IKTLGRDTRELVLTNGESWHWDQLFIATGA-AARPLPLLDALGERCFTLRHAGDAA-------RLREVLQPERSVVIVGA 152 (396)
T ss_pred EEEEECCCCEEEECCCCEEEcCEEEEccCC-CCCCCCCCCcCCCCEEecCCHHHHH-------HHHHHhhcCCeEEEECC
Confidence 4 2 234444443 579999999999 4666666666666676543322110 00011225689999999
Q ss_pred CchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCC
Q 011535 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (483)
Q Consensus 168 G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~ 247 (483)
|.+|+|+|..|.+ .+ .+|+++.+.+.+......
T Consensus 153 G~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~-------------------------- 185 (396)
T PRK09754 153 GTIGLELAASATQ--------------------RR-CKVTVIELAATVMGRNAP-------------------------- 185 (396)
T ss_pred CHHHHHHHHHHHH--------------------cC-CeEEEEecCCcchhhhcC--------------------------
Confidence 9999999999985 34 479999988654221111
Q ss_pred cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccC
Q 011535 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (483)
Q Consensus 248 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~ 327 (483)
+.....+.+.+. ++||+++++..+.++. . ++.+ .+.+. +
T Consensus 186 -------~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~~~-~v~l~----------------~ 224 (396)
T PRK09754 186 -------PPVQRYLLQRHQ-------------QAGVRILLNNAIEHVV--D--GEKV-ELTLQ----------------S 224 (396)
T ss_pred -------HHHHHHHHHHHH-------------HCCCEEEeCCeeEEEE--c--CCEE-EEEEC----------------C
Confidence 111122223332 6799999999998886 2 2222 12221 2
Q ss_pred CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--cc------hhHh
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--TG------IIAT 399 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~--~~------~~~~ 399 (483)
| ++++||+||+++|++|++ .|....|+..+ +.+.+|++ ++|+.|+|||+|||+..+ .+ ....
T Consensus 225 g--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~--~gi~vd~~--~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~ 294 (396)
T PRK09754 225 G--ETLQADVVIYGIGISAND----QLAREANLDTA--NGIVIDEA--CRTCDPAIFAGGDVAITRLDNGALHRCESWEN 294 (396)
T ss_pred C--CEEECCEEEECCCCChhh----HHHHhcCCCcC--CCEEECCC--CccCCCCEEEccceEeeeCCCCCEEEECcHHH
Confidence 2 379999999999999986 34455666553 45889987 779999999999998422 22 1236
Q ss_pred hHHHHHHHHHHHHH
Q 011535 400 NLYCAEETVASISE 413 (483)
Q Consensus 400 a~~~g~~~a~~I~~ 413 (483)
|..||+.+|.||+.
T Consensus 295 A~~qg~~aa~ni~g 308 (396)
T PRK09754 295 ANNQAQIAAAAMLG 308 (396)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=249.30 Aligned_cols=286 Identities=15% Similarity=0.173 Sum_probs=188.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCCc-eecccCCCCC--------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHP-------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~ggl-~~~g~~p~~~-------------------- 69 (483)
.++|+|||+||||+++|..+++.+ .+|+|||+.. ..||. ++.|+.|...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 469999999999999999999999 9999999741 24553 4555555211
Q ss_pred -------ChHH-------H----HHHHHHHHhcCCeEEEeCeEE--c-eEEEec--ce---eeccCEEEEccCCCCCCCC
Q 011535 70 -------ETKI-------V----INQFSRVVQHERCSFFGNVTL--G-SSVSLS--EL---RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 70 -------~~~~-------~----~~~~~~~~~~~~v~~~~~~~v--~-~~~~~~--~~---~~~yd~vvlAtG~~~~~~~ 123 (483)
.... + ...+...++..+++++.+... + ..+.+. ++ ...||+||||||+ .|+.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGE-RPRYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCC-CCCCC
Confidence 0110 1 112334456678888776543 1 123322 21 3479999999999 57778
Q ss_pred CCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc
Q 011535 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (483)
Q Consensus 124 ~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~ 203 (483)
++||.+. ..+++.++... . ...++++|||+|++|+|+|..|.+ .+
T Consensus 159 ~ipG~~~-~~~~~~~~~~~----------~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G- 203 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFSL----------P---YCPGKTLVVGASYVALECAGFLAG--------------------IG- 203 (484)
T ss_pred CCCCccc-eeecHHHhhcc----------c---ccCCCEEEECCCHHHHHHHHHHHH--------------------hC-
Confidence 8888642 12333322210 0 134689999999999999999985 34
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceE
Q 011535 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (483)
Q Consensus 204 ~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i 283 (483)
.+|+++.|. .+...|. + .+...+.+.|. ++||
T Consensus 204 ~~Vtli~~~-~~l~~~d-~---------------------------------~~~~~l~~~L~-------------~~gV 235 (484)
T TIGR01438 204 LDVTVMVRS-ILLRGFD-Q---------------------------------DCANKVGEHME-------------EHGV 235 (484)
T ss_pred CcEEEEEec-ccccccC-H---------------------------------HHHHHHHHHHH-------------HcCC
Confidence 479999874 3222121 1 11122223333 6799
Q ss_pred EEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccC
Q 011535 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN 363 (483)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~ 363 (483)
+++++..+.++. . .++.+ .+++.+ .+..+++++|.||+|+|++|++ ..+ ..+..|+..+
T Consensus 236 ~i~~~~~v~~v~--~-~~~~~-~v~~~~---------------~~~~~~i~~D~vl~a~G~~pn~-~~l-~l~~~gv~~~ 294 (484)
T TIGR01438 236 KFKRQFVPIKVE--Q-IEAKV-KVTFTD---------------STNGIEEEYDTVLLAIGRDACT-RKL-NLENVGVKIN 294 (484)
T ss_pred EEEeCceEEEEE--E-cCCeE-EEEEec---------------CCcceEEEeCEEEEEecCCcCC-CcC-Ccccccceec
Confidence 999999888886 3 23322 233321 1112479999999999999987 211 1356788877
Q ss_pred C-CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 364 I-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 364 ~-~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+ +|+|.+|+. ++|+.|+|||+|||+.+.......|+.+|+.+|.+|..
T Consensus 295 ~~~G~I~Vd~~--~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 295 KKTGKIPADEE--EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcCCeEecCCC--cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 5 599999987 78999999999999864333344799999999999974
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.31 Aligned_cols=283 Identities=16% Similarity=0.226 Sum_probs=187.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCCC------------------------CC--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH------------------------PE-- 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~~------------------------~~-- 70 (483)
.+++|+|||+||||+++|..|++.+ .+|+|||+.+.+||.+ ..|+.|.. +.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 92 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID 92 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence 5689999999999999999999999 9999999986677643 33333311 11
Q ss_pred hHHH-------HHH-----HHHHHhcC-CeEEEeCeEE--c-e--EEEecce---eeccCEEEEccCCCCCCCCCCCCCC
Q 011535 71 TKIV-------INQ-----FSRVVQHE-RCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (483)
Q Consensus 71 ~~~~-------~~~-----~~~~~~~~-~v~~~~~~~v--~-~--~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~ 129 (483)
...+ ... +...++.. +++++.+... + . .+...++ ...||+||||||+ .|+.|++||.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~p~i~G~~ 171 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS-TPTIPPIPGLM 171 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC-CCCCCCCCCcC
Confidence 1111 111 22223322 6777665432 1 1 2333333 3469999999999 67888899865
Q ss_pred CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEE
Q 011535 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (483)
Q Consensus 130 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li 209 (483)
...+++..+.. . .. ..+++++|||+|++|+|+|..|.+ .+ .+|+++
T Consensus 172 ~~~~~~~~~~l---~---------~~-~~~k~vvVIGgG~iG~E~A~~l~~--------------------~G-~~Vtlv 217 (479)
T PRK14727 172 DTPYWTSTEAL---F---------SD-ELPASLTVIGSSVVAAEIAQAYAR--------------------LG-SRVTIL 217 (479)
T ss_pred ccceecchHHh---c---------cc-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEE
Confidence 33233222111 0 00 135899999999999999999875 34 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecC
Q 011535 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 210 ~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
.|.. +...+. +.....+.+.|. +.||+++++.
T Consensus 218 ~~~~-~l~~~d----------------------------------~~~~~~l~~~L~-------------~~GV~i~~~~ 249 (479)
T PRK14727 218 ARST-LLFRED----------------------------------PLLGETLTACFE-------------KEGIEVLNNT 249 (479)
T ss_pred EcCC-CCCcch----------------------------------HHHHHHHHHHHH-------------hCCCEEEcCc
Confidence 8753 221111 111112223332 6789999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++ .+.+.. .+ .++++|.||+|+|++|++. .+ ..+..|+..+++|++.
T Consensus 250 ~V~~i~--~-~~~---~~~v~~----------------~~-g~i~aD~VlvA~G~~pn~~-~l-~l~~~g~~~~~~G~i~ 304 (479)
T PRK14727 250 QASLVE--H-DDN---GFVLTT----------------GH-GELRAEKLLISTGRHANTH-DL-NLEAVGVTTDTSGAIV 304 (479)
T ss_pred EEEEEE--E-eCC---EEEEEE----------------cC-CeEEeCEEEEccCCCCCcc-CC-CchhhCceecCCCCEE
Confidence 888886 3 122 122211 11 2589999999999999872 11 1355688888899999
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++ ++|++|+|||+|||+..+.... .|+.+|+.+|.+|..
T Consensus 305 Vd~~--~~Ts~~~IyA~GD~~~~~~~~~-~A~~~G~~aa~~i~g 345 (479)
T PRK14727 305 VNPA--METSAPDIYAAGDCSDLPQFVY-VAAAAGSRAGINMTG 345 (479)
T ss_pred ECCC--eecCCCCEEEeeecCCcchhhh-HHHHHHHHHHHHHcC
Confidence 9998 7899999999999987776555 799999999999864
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=243.87 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=181.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCCc-eecccCCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDH--------------------- 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~ggl-~~~g~~p~~--------------------- 68 (483)
.++|+||||||||++||..|++.+ .+|+|||+.+ .+||. +..|+.|..
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 479999999999999999999999 9999999732 25664 555665631
Q ss_pred -----CChHHHHHHHHHH-----------HhcCCeEEEeCeEE---ceEEEecc----eeeccCEEEEccCCCCCCCC-C
Q 011535 69 -----PETKIVINQFSRV-----------VQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRAL-G 124 (483)
Q Consensus 69 -----~~~~~~~~~~~~~-----------~~~~~v~~~~~~~v---~~~~~~~~----~~~~yd~vvlAtG~~~~~~~-~ 124 (483)
....++...+... ++..+++++.+... ...+.+.+ ....||+||||||+ .|..| +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs-~p~~p~~ 161 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG-RPSIPED 161 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-CCCCCCC
Confidence 1112222222222 22346666654332 11233221 23579999999999 45544 5
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
+||.+.. .+++.++.. +. ..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 162 i~G~~~~-~~~~~~~~~----------~~---~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~ 206 (499)
T PTZ00052 162 VPGAKEY-SITSDDIFS----------LS---KDPGKTLIVGASYIGLETAGFLNE--------------------LG-F 206 (499)
T ss_pred CCCccce-eecHHHHhh----------hh---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 8875421 223322211 00 135789999999999999999985 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+||++.++. ....+. +...+.+.+.|. ++||+
T Consensus 207 ~Vtli~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~GV~ 238 (499)
T PTZ00052 207 DVTVAVRSI-PLRGFD----------------------------------RQCSEKVVEYMK-------------EQGTL 238 (499)
T ss_pred cEEEEEcCc-ccccCC----------------------------------HHHHHHHHHHHH-------------HcCCE
Confidence 799998743 222221 111222233333 67899
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. . .++.+ .+.+. ++ +++++|.||+|+|++|+. ..+. .+..++.+++
T Consensus 239 i~~~~~v~~v~--~-~~~~~-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~-~~l~-l~~~g~~~~~ 294 (499)
T PTZ00052 239 FLEGVVPINIE--K-MDDKI-KVLFS----------------DG--TTELFDTVLYATGRKPDI-KGLN-LNAIGVHVNK 294 (499)
T ss_pred EEcCCeEEEEE--E-cCCeE-EEEEC----------------CC--CEEEcCEEEEeeCCCCCc-cccC-chhcCcEECC
Confidence 99999888886 3 12222 22221 12 268999999999999986 2111 2567888888
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++.+++ .+|+.|+|||+|||+.+.......|+.+|+.+|.+|..
T Consensus 295 ~G~ii~~~---~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 295 SNKIIAPN---DCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred CCCEeeCC---CcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence 89876654 26899999999999864434444799999999999964
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=242.96 Aligned_cols=301 Identities=13% Similarity=0.099 Sum_probs=186.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-CCCCC-ceecccCCCCC---------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFG-LVRSGVAPDHP--------------------------- 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~~~gg-l~~~g~~p~~~--------------------------- 69 (483)
.++|+|||+||+|+.+|..+++.| .+|+|||+. ..+|| .+..|+.|...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G--~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 469999999999999999999999 999999975 23454 35555555211
Q ss_pred --------------------ChHHHH-----------HHHHHHHhcCC-------eEEEeCeEE--c-eEEEec-c-eee
Q 011535 70 --------------------ETKIVI-----------NQFSRVVQHER-------CSFFGNVTL--G-SSVSLS-E-LRQ 106 (483)
Q Consensus 70 --------------------~~~~~~-----------~~~~~~~~~~~-------v~~~~~~~v--~-~~~~~~-~-~~~ 106 (483)
....+. ..+...++..+ ++++.+... . ..+... + ...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 011111 11222233332 555544331 1 122221 2 234
Q ss_pred ccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCcccc
Q 011535 107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA 186 (483)
Q Consensus 107 ~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~ 186 (483)
.||+||||||+ .|..|++++.+..+++++.+...+ . ..+++|+|||+|.+|+|+|..|..
T Consensus 274 ~ad~lIIATGS-~P~~P~~~~~~~~~V~ts~d~~~l----------~---~lpk~VvIVGgG~iGvE~A~~l~~------ 333 (659)
T PTZ00153 274 KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVKL----------E---GLQNYMGIVGMGIIGLEFMDIYTA------ 333 (659)
T ss_pred ECCEEEEcCCC-CCCCCCCCCCCCCcEEehHHhhhh----------h---hcCCceEEECCCHHHHHHHHHHHh------
Confidence 79999999999 566666666555667766544321 0 035799999999999999988875
Q ss_pred ccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHH
Q 011535 187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLS 266 (483)
Q Consensus 187 ~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~ 266 (483)
.+ .+|+++.+.+.+...+.. + ..+.+.+.+.
T Consensus 334 --------------~G-~eVTLIe~~~~ll~~~d~-e---------------------------------is~~l~~~ll 364 (659)
T PTZ00153 334 --------------LG-SEVVSFEYSPQLLPLLDA-D---------------------------------VAKYFERVFL 364 (659)
T ss_pred --------------CC-CeEEEEeccCcccccCCH-H---------------------------------HHHHHHHHHh
Confidence 34 589999998765432221 1 1111112111
Q ss_pred HHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 267 KAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
.++||+++++..+.++. .++++....+.+.... .++..+. ....++.+++++|.||||+|++|
T Consensus 365 ------------~~~GV~I~~~~~V~~I~--~~~~~~~v~v~~~~~~-~~~~~~~--~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 365 ------------KSKPVRVHLNTLIEYVR--AGKGNQPVIIGHSERQ-TGESDGP--KKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred ------------hcCCcEEEcCCEEEEEE--ecCCceEEEEEEeccc-ccccccc--ccccccceEEEcCEEEEEECccc
Confidence 15789999999999997 3112211122221100 0000000 00011224799999999999999
Q ss_pred CCCCCCCccCCCCcccCCCCeeeecCCCCCCcc------cCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 347 VPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQV------ENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 347 ~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~------~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+. ..+. .+..++..+ +|+|.||++ ++|+ +|+|||+|||...+.-. ..|..||+.++++|..
T Consensus 428 nt-~~L~-l~~~gi~~~-~G~I~VDe~--lqTs~~~~~~v~~IYAiGDv~g~~~La-~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 428 NT-NNLG-LDKLKIQMK-RGFVSVDEH--LRVLREDQEVYDNIFCIGDANGKQMLA-HTASHQALKVVDWIEG 494 (659)
T ss_pred CC-ccCC-chhcCCccc-CCEEeECCC--CCcCCCCCCCCCCEEEEEecCCCccCH-HHHHHHHHHHHHHHcC
Confidence 86 2221 244567665 499999998 6665 69999999997655444 4799999999999975
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=239.57 Aligned_cols=281 Identities=12% Similarity=0.157 Sum_probs=179.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCC--------------------------ChH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------------------------ETK 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~--------------------------~~~ 72 (483)
.++|+|||+||+|+.+|.. ..| .+|+|||+...-|-+++.|+.|... ..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FAD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCC--CeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 4799999999999998654 357 9999999865444455666655311 111
Q ss_pred HHH--------HHHH----HH-H--hcCCeEEEeCeEE---ceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCe
Q 011535 73 IVI--------NQFS----RV-V--QHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (483)
Q Consensus 73 ~~~--------~~~~----~~-~--~~~~v~~~~~~~v---~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v 133 (483)
.+. ..+. .. . +..+++++.+... ...+.+.++ ...||+||||||+ .|..|++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs-~p~~p~~~~~~~~~~ 156 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS-RPYIPPAIADSGVRY 156 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC-CCCCCCCCCCCCCEE
Confidence 111 1111 11 1 2257887776543 223444443 3479999999999 455544333221112
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+..+... +. ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+
T Consensus 157 ~~~~~~~~----------l~---~~~k~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtli~~~~ 202 (452)
T TIGR03452 157 HTNEDIMR----------LP---ELPESLVIVGGGYIAAEFAHVFSA--------------------LG-TRVTIVNRST 202 (452)
T ss_pred EcHHHHHh----------hh---hcCCcEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEEccC
Confidence 22222211 00 135799999999999999999875 34 5799999876
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. . ... +.+.+.. +.+|+++++..+.+
T Consensus 203 ~ll~~~d-~---------------------------------~~~----~~l~~~~----------~~gI~i~~~~~V~~ 234 (452)
T TIGR03452 203 KLLRHLD-E---------------------------------DIS----DRFTEIA----------KKKWDIRLGRNVTA 234 (452)
T ss_pred ccccccC-H---------------------------------HHH----HHHHHHH----------hcCCEEEeCCEEEE
Confidence 5421111 0 111 1121111 34799999998888
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . +++.+ .+.+. ++ +++++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 235 i~--~-~~~~v-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~~-~l~-~~~~gl~~~~~G~i~vd~~ 290 (452)
T TIGR03452 235 VE--Q-DGDGV-TLTLD----------------DG--STVTADVLLVATGRVPNGD-LLD-AEAAGVEVDEDGRIKVDEY 290 (452)
T ss_pred EE--E-cCCeE-EEEEc----------------CC--CEEEcCEEEEeeccCcCCC-CcC-chhcCeeECCCCcEeeCCC
Confidence 87 3 23322 12211 22 3799999999999999861 111 2456888888999999998
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.-.. .|.+||+.+|+||..
T Consensus 291 --~~Ts~~~IyA~GD~~~~~~l~~-~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 --GRTSARGVWALGDVSSPYQLKH-VANAEARVVKHNLLH 327 (452)
T ss_pred --cccCCCCEEEeecccCcccChh-HHHHHHHHHHHHhcC
Confidence 6799999999999987554444 699999999999974
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=202.66 Aligned_cols=291 Identities=19% Similarity=0.263 Sum_probs=208.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC----CCCCCceec----ccCCCCC---ChHHHHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRS----GVAPDHP---ETKIVINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~----~~~ggl~~~----g~~p~~~---~~~~~~~~~~~~~~~~~v 87 (483)
+.+|+|||+|||+..||+++++.. ++-+|||-- -.+||.+.. .-.|++| .-.++.+.++++..+.|.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 458999999999999999999998 899999843 235666532 1225554 345788889999999999
Q ss_pred EEEeCeEEceEEE-------ecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCC--CCCCCCCCC
Q 011535 88 SFFGNVTLGSSVS-------LSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKS 158 (483)
Q Consensus 88 ~~~~~~~v~~~~~-------~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~ 158 (483)
+++..++-..+++ .+.....+|+||+|||+ ..+.+.+||... +-| |-.+...+ ++-...+.+
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGA-sAkRl~~pg~ge-~~f-------WqrGiSaCAVCDGaapifr 156 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGA-SAKRLHLPGEGE-GEF-------WQRGISACAVCDGAAPIFR 156 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEeccc-ceeeeecCCCCc-chH-------HhcccchhhcccCcchhhc
Confidence 8887765433222 23333469999999999 567778888621 111 21121111 111222347
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+|..+|||||.+++|-|..|.+ -.++|+||.|++.+.+
T Consensus 157 nk~laVIGGGDsA~EEA~fLtk---------------------yaskVyii~Rrd~fRA--------------------- 194 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTK---------------------YASKVYIIHRRDHFRA--------------------- 194 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHh---------------------hccEEEEEEEhhhhhH---------------------
Confidence 8999999999999999999986 4578999999975311
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
...+.+.+. ...+|++++++...+.. + +.+.+..+++.++
T Consensus 195 -----------------------s~~Mq~ra~--------~npnI~v~~nt~~~ea~--g-d~~~l~~l~ikn~------ 234 (322)
T KOG0404|consen 195 -----------------------SKIMQQRAE--------KNPNIEVLYNTVAVEAL--G-DGKLLNGLRIKNV------ 234 (322)
T ss_pred -----------------------HHHHHHHHh--------cCCCeEEEechhhhhhc--c-CcccccceEEEec------
Confidence 122222222 26789999999999988 6 3455666766553
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-Ccchh
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTGII 397 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~~~ 397 (483)
.+|+...++++-+++++|-.|++ .|.+. .++++.+|+|++.+.. ..|++||+||+||+... -.+.+
T Consensus 235 -------~tge~~dl~v~GlFf~IGH~Pat----~~l~g-qve~d~~GYi~t~pgt-s~TsvpG~FAAGDVqD~kyRQAv 301 (322)
T KOG0404|consen 235 -------KTGEETDLPVSGLFFAIGHSPAT----KFLKG-QVELDEDGYIVTRPGT-SLTSVPGVFAAGDVQDKKYRQAV 301 (322)
T ss_pred -------ccCcccccccceeEEEecCCchh----hHhcC-ceeeccCceEEeccCc-ccccccceeeccccchHHHHHHH
Confidence 36777799999999999999987 34443 7889999999988765 77999999999999753 23444
Q ss_pred HhhHHHHHHHHHHHHHHHh
Q 011535 398 ATNLYCAEETVASISEDLE 416 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~ 416 (483)
+|...|..+|....++|.
T Consensus 302 -TaAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 302 -TAAGSGCIAALDAERYLT 319 (322)
T ss_pred -hhhccchhhhhhHHHHhh
Confidence 678888888877777765
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-26 Score=251.35 Aligned_cols=281 Identities=21% Similarity=0.175 Sum_probs=198.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc--CCCCCChHHHHHHHHHHHhcC-CeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHPETKIVINQFSRVVQHE-RCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~--~p~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v 95 (483)
.++|+|||||||||+||..+++.+ ++|+|||+.+.+||.+.+.. .++ ....++...+.+.+... ++++..++.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 578999999999999999999998 99999999999999876422 122 22334444444444444 5888877654
Q ss_pred ce-----------EEE----------ecce--eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCC
Q 011535 96 GS-----------SVS----------LSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNL 152 (483)
Q Consensus 96 ~~-----------~~~----------~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~ 152 (483)
.. ... ..+. ...||.||||||+ .++++++||.+.++|+++.....+++..
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa-~~r~~pipG~~~pgV~~~~~~~~~l~~~------ 312 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA-HERPLVFANNDRPGVMLAGAARTYLNRY------ 312 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC-CCcCCCCCCCCCCCcEEchHHHHHHHhh------
Confidence 11 000 0011 2469999999999 5888899999999999875544333221
Q ss_pred CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCC
Q 011535 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN 232 (483)
Q Consensus 153 ~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~ 232 (483)
....+++|+|||+|++|+|+|..|.+ .+.+.|+++.+++...
T Consensus 313 --~~~~gk~VvViG~G~~g~e~A~~L~~--------------------~G~~vV~vv~~~~~~~---------------- 354 (985)
T TIGR01372 313 --GVAPGKRIVVATNNDSAYRAAADLLA--------------------AGIAVVAIIDARADVS---------------- 354 (985)
T ss_pred --CcCCCCeEEEECCCHHHHHHHHHHHH--------------------cCCceEEEEccCcchh----------------
Confidence 11257899999999999999999986 6777889987664220
Q ss_pred eeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeee
Q 011535 233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (483)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~ 312 (483)
..+.+.+. +.||+++++..+.++. + ++++.+|++...
T Consensus 355 --------------------------~~l~~~L~-------------~~GV~i~~~~~v~~i~--g--~~~v~~V~l~~~ 391 (985)
T TIGR01372 355 --------------------------PEARAEAR-------------ELGIEVLTGHVVAATE--G--GKRVSGVAVARN 391 (985)
T ss_pred --------------------------HHHHHHHH-------------HcCCEEEcCCeEEEEe--c--CCcEEEEEEEec
Confidence 01112222 6689999999999997 4 567777776531
Q ss_pred eeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcc--cCCC--CeeeecCCCCCCcccCceeeecc
Q 011535 313 ALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV--PNIR--GRVLKNISGDSSQVENGLYVCGW 388 (483)
Q Consensus 313 ~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~--~~~~--G~v~v~~~~~~~t~~p~vya~Gd 388 (483)
+++.++++||.|++++|++|+. .+....|+. .++. +++ ..|++|+||++||
T Consensus 392 --------------~g~~~~i~~D~V~va~G~~Pnt----~L~~~lg~~~~~~~~~~~~~-------~~t~v~gVyaaGD 446 (985)
T TIGR01372 392 --------------GGAGQRLEADALAVSGGWTPVV----HLFSQRGGKLAWDAAIAAFL-------PGDAVQGCILAGA 446 (985)
T ss_pred --------------CCceEEEECCEEEEcCCcCchh----HHHHhcCCCeeeccccCcee-------cCCCCCCeEEeec
Confidence 2445689999999999999987 233333332 2221 222 2267899999999
Q ss_pred CCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 389 LKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 389 ~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
++ +..++. .|+.+|..+|..|+.++..
T Consensus 447 ~~-g~~~~~-~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 447 AN-GLFGLA-AALADGAAAGAAAARAAGF 473 (985)
T ss_pred cC-CccCHH-HHHHHHHHHHHHHHHHcCC
Confidence 86 666776 7999999999999998864
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=204.76 Aligned_cols=285 Identities=18% Similarity=0.233 Sum_probs=194.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCC--------------------C-----Ch
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDH--------------------P-----ET 71 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~--------------------~-----~~ 71 (483)
..++.+|||||-+|+.+|++++..| .++.|+|-.-..|| .+.+|+.|.. + +.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 4689999999999999999999999 99999998745555 3455554421 0 00
Q ss_pred ---------HHHHH----HHHHHHhcCCeEEEeCeEE-c----eEEEeccee---eccCEEEEccCCCCCCCCCCCCCCC
Q 011535 72 ---------KIVIN----QFSRVVQHERCSFFGNVTL-G----SSVSLSELR---QLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 72 ---------~~~~~----~~~~~~~~~~v~~~~~~~v-~----~~~~~~~~~---~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
+..+. .+++.+...+++++.+..- . -++...++. ....+++||||. .|..|.|||.++
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg-~p~~PnIpG~E~ 175 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG-RPIIPNIPGAEL 175 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC-ccCCCCCCchhh
Confidence 01111 2334445556777665432 1 123334443 246789999999 677789999764
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
. .++..|.. ++ ..+++++|||+|++|+|+|..+.. .+ .+++++.
T Consensus 176 g--idSDgff~----------Le---e~Pkr~vvvGaGYIavE~Agi~~g--------------------Lg-sethlfi 219 (478)
T KOG0405|consen 176 G--IDSDGFFD----------LE---EQPKRVVVVGAGYIAVEFAGIFAG--------------------LG-SETHLFI 219 (478)
T ss_pred c--cccccccc----------hh---hcCceEEEEccceEEEEhhhHHhh--------------------cC-CeeEEEE
Confidence 2 12222221 11 156899999999999999999985 34 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 290 (483)
|.......|.. -++.-+.+.+. .+||++|.+++
T Consensus 220 R~~kvLR~FD~----------------------------------~i~~~v~~~~~-------------~~ginvh~~s~ 252 (478)
T KOG0405|consen 220 RQEKVLRGFDE----------------------------------MISDLVTEHLE-------------GRGINVHKNSS 252 (478)
T ss_pred ecchhhcchhH----------------------------------HHHHHHHHHhh-------------hcceeeccccc
Confidence 98766544441 11111222222 78999999999
Q ss_pred cceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee
Q 011535 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 291 ~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v 370 (483)
+.++.. . +++-...+. ..+ ....+|.++||+|.+|++ .+|.+ ++.|+.++++|.|.+
T Consensus 253 ~~~v~K-~-~~g~~~~i~-----------------~~~--~i~~vd~llwAiGR~Pnt-k~L~l-e~vGVk~~~~g~Iiv 309 (478)
T KOG0405|consen 253 VTKVIK-T-DDGLELVIT-----------------SHG--TIEDVDTLLWAIGRKPNT-KGLNL-ENVGVKTDKNGAIIV 309 (478)
T ss_pred ceeeee-c-CCCceEEEE-----------------ecc--ccccccEEEEEecCCCCc-ccccc-hhcceeeCCCCCEEE
Confidence 999872 2 233221111 112 244599999999999987 34433 678999999999999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
|++ +.|++|+||++||+. +.....+.|++.|+.+++.+...
T Consensus 310 DeY--q~Tnvp~I~avGDv~-gk~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 310 DEY--QNTNVPSIWAVGDVT-GKINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred ecc--ccCCCCceEEecccc-CcEecchHHHhhhhhHHHHhhcC
Confidence 998 999999999999995 55555567999999888877664
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=208.97 Aligned_cols=285 Identities=20% Similarity=0.248 Sum_probs=202.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc--c-----CCCCCChHHHHHHHHHHHhcCCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--V-----APDHPETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g--~-----~p~~~~~~~~~~~~~~~~~~~~v~~ 89 (483)
+..++|+||||||||-+||.+.+|+| ++.-++- ...||....- + .|. .+-..+...+++..+++.+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKG--iRTGl~a--erfGGQvldT~~IENfIsv~~-teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKG--IRTGLVA--ERFGGQVLDTMGIENFISVPE-TEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhc--chhhhhh--hhhCCeeccccchhheecccc-ccchHHHHHHHHHHhhcCchh
Confidence 45799999999999999999999999 8877774 3456654321 1 122 222345666777777766655
Q ss_pred EeCeEE---------c--eEEEecceee-ccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCC
Q 011535 90 FGNVTL---------G--SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSP 154 (483)
Q Consensus 90 ~~~~~v---------~--~~~~~~~~~~-~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~ 154 (483)
...... + ..+++.++.. ....+|||||+ .++..++||++ .+||- |+ -|++ .
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA-rWRn~nvPGE~e~rnKGVa----yC----PHCD-----G 349 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA-RWRNMNVPGEDEYRNKGVA----YC----PHCD-----G 349 (520)
T ss_pred hhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc-chhcCCCCchHHHhhCCee----eC----CCCC-----C
Confidence 332111 1 2355555543 58899999999 68889999987 44543 22 2222 2
Q ss_pred CCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCee
Q 011535 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY 234 (483)
Q Consensus 155 ~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~ 234 (483)
.+.++|+|+||||||+|+|.|..|+- -+++||++.-.+.+
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAG---------------------iv~hVtllEF~~eL------------------- 389 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEL------------------- 389 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHh---------------------hhheeeeeecchhh-------------------
Confidence 34489999999999999999999984 45788887533221
Q ss_pred EEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeee
Q 011535 235 VHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (483)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l 314 (483)
... +.|.+... .-.++.+..+...++|. + +..+|.++++.+.
T Consensus 390 ------------------kAD-------~VLq~kl~--------sl~Nv~ii~na~Ttei~--G-dg~kV~Gl~Y~dr-- 431 (520)
T COG3634 390 ------------------KAD-------AVLQDKLR--------SLPNVTIITNAQTTEVK--G-DGDKVTGLEYRDR-- 431 (520)
T ss_pred ------------------hhH-------HHHHHHHh--------cCCCcEEEecceeeEEe--c-CCceecceEEEec--
Confidence 001 11221111 14678999999999998 7 4578888887762
Q ss_pred eCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc
Q 011535 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT 394 (483)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~ 394 (483)
.+|+...++-+-|+.-+|.-||+ .|.+.. +.+++.|.|++|.. ..|++|||||+|||...|.
T Consensus 432 -----------~sge~~~l~LeGvFVqIGL~PNT----~WLkg~-vel~~rGEIivD~~--g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 432 -----------VSGEEHHLELEGVFVQIGLLPNT----EWLKGA-VELNRRGEIIVDAR--GETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred -----------cCCceeEEEeeeeEEEEecccCh----hHhhch-hhcCcCccEEEecC--CCcCCCceeecCcccCCcc
Confidence 25666789999999999999998 587765 88999999999998 7899999999999987664
Q ss_pred chhHhhHHHHHHHHHHHHHHHh
Q 011535 395 GIIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 395 ~~~~~a~~~g~~~a~~I~~~l~ 416 (483)
..+-.+|..|..++-....+|-
T Consensus 494 KQIIIamG~GA~AaL~AFDyLI 515 (520)
T COG3634 494 KQIIIAMGEGAKASLSAFDYLI 515 (520)
T ss_pred ceEEEEecCcchhhhhhhhhhe
Confidence 4333789888888877666653
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=217.53 Aligned_cols=271 Identities=18% Similarity=0.252 Sum_probs=197.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CCCceecccCCCCC--ChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVRSGVAPDHP--ETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~ggl~~~g~~p~~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..+.++|||+|++|..|+..+...++--+++++-+... |+.-.+. |... ..++......++.+..+++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~L---s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARL---SKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhc---ccceeeccccccccChhhHhhcCceEEEcce
Confidence 46899999999999999999999997778888875543 3322111 1111 1123334455677888999999987
Q ss_pred Ec------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 95 v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
+. +.+.+.++. ..|++++||||+ .++.+++||.+.++++.-++... ...+........+|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs-~~~~l~~pG~~~~nv~~ireied-------a~~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGS-SAKTLDIPGVELKNVFYLREIED-------ANRLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecC-ccccCCCCCccccceeeeccHHH-------HHHHHHHhccCceEEEECc
Confidence 73 234444444 369999999999 78889999999888876655431 1111112224678999999
Q ss_pred CchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCC
Q 011535 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (483)
Q Consensus 168 G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~ 247 (483)
|..|+|+|..|.. ...+||++.+.+.....+
T Consensus 222 G~ig~Evaa~l~~---------------------~~~~VT~V~~e~~~~~~l---------------------------- 252 (478)
T KOG1336|consen 222 GFIGMEVAAALVS---------------------KAKSVTVVFPEPWLLPRL---------------------------- 252 (478)
T ss_pred hHHHHHHHHHHHh---------------------cCceEEEEccCccchhhh----------------------------
Confidence 9999999999985 578999999886543211
Q ss_pred cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccC
Q 011535 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (483)
Q Consensus 248 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~ 327 (483)
-.+.+.++..+.+. ++||+++.++.+.++. +..+|.+..|.+.+
T Consensus 253 -----f~~~i~~~~~~y~e-------------~kgVk~~~~t~~s~l~--~~~~Gev~~V~l~d---------------- 296 (478)
T KOG1336|consen 253 -----FGPSIGQFYEDYYE-------------NKGVKFYLGTVVSSLE--GNSDGEVSEVKLKD---------------- 296 (478)
T ss_pred -----hhHHHHHHHHHHHH-------------hcCeEEEEecceeecc--cCCCCcEEEEEecc----------------
Confidence 11334444445554 7899999999999998 43467777776654
Q ss_pred CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP 393 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~ 393 (483)
+.+++||+||.++|.+|++ .+.+. +..++..|.+.|++. ++|++|+|||+||+++-|
T Consensus 297 --g~~l~adlvv~GiG~~p~t----~~~~~-g~~~~~~G~i~V~~~--f~t~~~~VyAiGDva~fp 353 (478)
T KOG1336|consen 297 --GKTLEADLVVVGIGIKPNT----SFLEK-GILLDSKGGIKVDEF--FQTSVPNVYAIGDVATFP 353 (478)
T ss_pred --CCEeccCeEEEeecccccc----ccccc-cceecccCCEeehhc--eeeccCCcccccceeecc
Confidence 2489999999999999987 34454 777889999999998 889999999999999644
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=227.37 Aligned_cols=319 Identities=18% Similarity=0.242 Sum_probs=228.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCC--CceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPF--GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~g--gl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+++|||.|+||..+...+++..| ..+|++|-..|++. -.+...+.++..+.+++...-.+++++.+++++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 5789999999999999999999654 47999998877652 12222344555567777777788889999999998776
Q ss_pred c------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCC
Q 011535 96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (483)
Q Consensus 96 ~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G 168 (483)
. +.++.+.+. ..||.||||||| .|..+++||.++++++..+.+...+... ++ .+..++.+|||||
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS-~pfi~PiPG~~~~~v~~~R~i~D~~am~-~~------ar~~~~avVIGGG 154 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGS-YPFILPIPGSDLPGVFVYRTIDDVEAML-DC------ARNKKKAVVIGGG 154 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCc-cccccCCCCCCCCCeeEEecHHHHHHHH-HH------HhccCCcEEEccc
Confidence 2 345555544 469999999999 5787889999999999877665332211 11 1245678999999
Q ss_pred chHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc
Q 011535 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (483)
Q Consensus 169 ~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 248 (483)
..|+|+|..|.. .+ -++++++-.+.+.
T Consensus 155 LLGlEaA~~L~~--------------------~G-m~~~Vvh~~~~lM-------------------------------- 181 (793)
T COG1251 155 LLGLEAARGLKD--------------------LG-MEVTVVHIAPTLM-------------------------------- 181 (793)
T ss_pred hhhhHHHHHHHh--------------------CC-CceEEEeecchHH--------------------------------
Confidence 999999999985 34 3566665443221
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCC
Q 011535 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (483)
Q Consensus 249 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g 328 (483)
+. ++.+.--++|+.... ++|++++++....++. + .+.+.++++.+ |
T Consensus 182 --er---QLD~~ag~lL~~~le---------~~Gi~~~l~~~t~ei~--g--~~~~~~vr~~D--------G-------- 227 (793)
T COG1251 182 --ER---QLDRTAGRLLRRKLE---------DLGIKVLLEKNTEEIV--G--EDKVEGVRFAD--------G-------- 227 (793)
T ss_pred --HH---hhhhHHHHHHHHHHH---------hhcceeecccchhhhh--c--CcceeeEeecC--------C--------
Confidence 00 111111122322222 7899999999999987 4 77777777754 2
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---CcchhHhhHHHHH
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGIIATNLYCAE 405 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~~~~a~~~g~ 405 (483)
..+++|+|+||+|++|+. .+....|+.+|+ |. +++++ ++|+.|+|||+|+|+.. -.|.++.+..|++
T Consensus 228 --~~i~ad~VV~a~GIrPn~----ela~~aGlavnr-GI-vvnd~--mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~ 297 (793)
T COG1251 228 --TEIPADLVVMAVGIRPND----ELAKEAGLAVNR-GI-VVNDY--MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAK 297 (793)
T ss_pred --CcccceeEEEeccccccc----HhHHhcCcCcCC-Ce-eeccc--ccccCCCeeehhhHHHhcCccceehhHHHHHHH
Confidence 389999999999999987 466778898887 54 55555 89999999999999853 2355667888888
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHH
Q 011535 406 ETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWE 452 (483)
Q Consensus 406 ~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~ 452 (483)
++|+++.....+ .+ .-...++.|+..|+.+.|.+|.+
T Consensus 298 v~a~hl~~~~~~----~y------~gsv~stkLKv~Gvdl~S~GD~~ 334 (793)
T COG1251 298 VLADHLCGGEAE----AY------EGSVTSTKLKVSGVDVFSAGDFQ 334 (793)
T ss_pred HHHHHhccCccc----cc------ccccchhhhcccccceeeccchh
Confidence 888877655433 12 22345778899999999988776
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=212.85 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=198.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcC--CeEEEeCe
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHE--RCSFFGNV 93 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~--~v~~~~~~ 93 (483)
..+++|||+|+|.+|.+++..|-... ++|++|++.++. +-.+.+.+.-+-.+.+.+.+.....++.. +++++...
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 35789999999999999999998887 999999977652 33333333223334567777777776654 46666554
Q ss_pred EEce-----EEEe-----cc----eeeccCEEEEccCCCCCCCCCCCCCC-----CCCeeecceeeeeecCCCCCCCC--
Q 011535 94 TLGS-----SVSL-----SE----LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNL-- 152 (483)
Q Consensus 94 ~v~~-----~~~~-----~~----~~~~yd~vvlAtG~~~~~~~~ipg~~-----~~~v~~a~~~~~~~~~~~~~~~~-- 152 (483)
.... .++. .. ....||+||+|+|+ .+..++|||.. ++.+.++.++...+-...+...+
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA-~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~ 209 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA-EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPG 209 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccC-CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Confidence 4321 1221 11 22369999999999 68888999854 45555555543322211111111
Q ss_pred --CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC-CccEEEEEeecCcccccCCHHHHHHHhc
Q 011535 153 --SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS-SIRKVYLVGRRGPVQAACTAKELREILG 229 (483)
Q Consensus 153 --~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~-~~~~V~li~r~~~~~~~f~~~el~~~~~ 229 (483)
+++.++-.++||||||++|+|+|.+|+. +|.+..-+++-.. .--+||++...+.+...|
T Consensus 210 l~~eerkRlLh~VVVGGGPTGVEFAaEL~D--------fi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mF---------- 271 (491)
T KOG2495|consen 210 LSDEERKRLLHFVVVGGGPTGVEFAAELAD--------FIPEDLRKIYPELKKDIKVTLIEAADHILNMF---------- 271 (491)
T ss_pred CChHHhhheEEEEEECCCCcceeehHHHHH--------HHHHHHHHhhhcchhheEEEeeccchhHHHHH----------
Confidence 1112234589999999999999999985 3333332222111 112466665554332222
Q ss_pred CCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEE
Q 011535 230 IKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHF 309 (483)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~ 309 (483)
.+|+.+...+.. .+.+|.++.++.++.+. . . .+..
T Consensus 272 ----------------------------dkrl~~yae~~f---------~~~~I~~~~~t~Vk~V~--~---~---~I~~ 306 (491)
T KOG2495|consen 272 ----------------------------DKRLVEYAENQF---------VRDGIDLDTGTMVKKVT--E---K---TIHA 306 (491)
T ss_pred ----------------------------HHHHHHHHHHHh---------hhccceeecccEEEeec--C---c---EEEE
Confidence 222222222222 26789999888888885 2 2 2332
Q ss_pred eeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC--eeeecCCCCCCcccCceeeec
Q 011535 310 EKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG--RVLKNISGDSSQVENGLYVCG 387 (483)
Q Consensus 310 ~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G--~v~v~~~~~~~t~~p~vya~G 387 (483)
.. .+|+.++||..+++|+||..|.++. ....-..++.| ++.+|+++ +..+.+||||+|
T Consensus 307 ~~--------------~~g~~~~iPYG~lVWatG~~~rp~~-----k~lm~~i~e~~rr~L~vDE~L-rV~G~~nvfAiG 366 (491)
T KOG2495|consen 307 KT--------------KDGEIEEIPYGLLVWATGNGPRPVI-----KDLMKQIDEQGRRGLAVDEWL-RVKGVKNVFAIG 366 (491)
T ss_pred Ec--------------CCCceeeecceEEEecCCCCCchhh-----hhHhhcCCccCceeeeeecee-eccCcCceEEec
Confidence 22 1456679999999999999997732 22222344555 77889988 788999999999
Q ss_pred cCCCC----CcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 388 WLKRG----PTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 388 d~~~g----~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
||+.. |.+. .|.+||..+|.++-.....+.+
T Consensus 367 Dca~~~~~~~tAQ--VA~QqG~yLAk~fn~m~k~~~~ 401 (491)
T KOG2495|consen 367 DCADQRGLKPTAQ--VAEQQGAYLAKNFNKMGKGGNL 401 (491)
T ss_pred cccccccCccHHH--HHHHHHHHHHHHHHHHhcccCC
Confidence 99832 2333 4899999999988776654433
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=215.03 Aligned_cols=163 Identities=19% Similarity=0.271 Sum_probs=120.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc--------------------------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------------------------- 64 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------------------------------- 64 (483)
...++|+|||||||||+||++|++.| ++|+|||+++.+||.+.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 45689999999999999999999999 99999999999999886520
Q ss_pred -----CC-------------CCCChHHHHHHHHHHHhcCCeE--EEeCeEEce--------EEEecce-----eeccCEE
Q 011535 65 -----AP-------------DHPETKIVINQFSRVVQHERCS--FFGNVTLGS--------SVSLSEL-----RQLYHVV 111 (483)
Q Consensus 65 -----~p-------------~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~--------~~~~~~~-----~~~yd~v 111 (483)
.| .++...++..++++++++.++. +.+++.|.. .++..+. ...||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 01 1234467888999999888876 667766522 2332211 2359999
Q ss_pred EEccCC-CCCCCCCCCCCC-CCC-eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCcccccc
Q 011535 112 VLAYGA-ESDRALGIPGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATT 188 (483)
Q Consensus 112 vlAtG~-~~~~~~~ipg~~-~~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~ 188 (483)
|+|||. ..|+.|.+||.+ .+| ++++..+. .+ +...+|+|+|||+|++|+|+|..|..
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr-----~~-------~~~~gk~VvVVG~G~Sg~diA~~L~~-------- 225 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYR-----VP-------DPFKNEVVVVIGNFASGADISRDIAK-------- 225 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccC-----Cc-------cccCCCEEEEECCCcCHHHHHHHHHH--------
Confidence 999996 357778899874 343 23333222 11 12278999999999999999999985
Q ss_pred ccchHHHHHHhcCCccEEEEEeecCc
Q 011535 189 DIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 189 di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+++.|++.
T Consensus 226 -------------~a~~V~l~~r~~~ 238 (461)
T PLN02172 226 -------------VAKEVHIASRASE 238 (461)
T ss_pred -------------hCCeEEEEEeecc
Confidence 4679999999864
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=199.12 Aligned_cols=289 Identities=22% Similarity=0.322 Sum_probs=197.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCCCCh-------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPET------------------------- 71 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~~~~------------------------- 71 (483)
..++|+|||+||+|..||..+++.| +..+++|+....||. +..|+.|.....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 4689999999999999999999999 999999999888774 455666642211
Q ss_pred --------------HHHHHHHHHHHhcCCeEEEeCeEE--c-eEEEe--cc---eeeccCEEEEccCCCCCCCCCCCCC-
Q 011535 72 --------------KIVINQFSRVVQHERCSFFGNVTL--G-SSVSL--SE---LRQLYHVVVLAYGAESDRALGIPGE- 128 (483)
Q Consensus 72 --------------~~~~~~~~~~~~~~~v~~~~~~~v--~-~~~~~--~~---~~~~yd~vvlAtG~~~~~~~~ipg~- 128 (483)
+++..-+...++..++.++.+.-. + ..++. .+ ......++|+||||..+ ++||.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~---~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT---PFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccC---CCCCeE
Confidence 111222334444455555444321 1 01211 11 12357889999998433 34564
Q ss_pred -CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEE
Q 011535 129 -DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (483)
Q Consensus 129 -~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~ 207 (483)
|.+.+.++...+. +. .-+++++|||+|..|+|+.....+ .| .+||
T Consensus 193 IDekkIVSStgALs----------L~---~vPk~~~viG~G~IGLE~gsV~~r--------------------LG-seVT 238 (506)
T KOG1335|consen 193 IDEKKIVSSTGALS----------LK---EVPKKLTVIGAGYIGLEMGSVWSR--------------------LG-SEVT 238 (506)
T ss_pred ecCceEEecCCccc----------hh---hCcceEEEEcCceeeeehhhHHHh--------------------cC-CeEE
Confidence 3444555443221 11 146899999999999999998876 44 4788
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEee
Q 011535 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (483)
Q Consensus 208 li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~ 287 (483)
++.--+.+...+. .| +.+...+.|. ..|+.|++
T Consensus 239 ~VEf~~~i~~~mD-~E---------------------------------isk~~qr~L~-------------kQgikF~l 271 (506)
T KOG1335|consen 239 VVEFLDQIGGVMD-GE---------------------------------ISKAFQRVLQ-------------KQGIKFKL 271 (506)
T ss_pred EEEehhhhccccC-HH---------------------------------HHHHHHHHHH-------------hcCceeEe
Confidence 8876654432222 11 1111222232 67999999
Q ss_pred cCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCe
Q 011535 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (483)
Q Consensus 288 ~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~ 367 (483)
++.+..+.+++ +|.| .|++++. .+++.++++||.++.|+|.+|.+ .+|.+ ++.|++.|.+||
T Consensus 272 ~tkv~~a~~~~--dg~v-~i~ve~a-------------k~~k~~tle~DvlLVsiGRrP~t-~GLgl-e~iGi~~D~r~r 333 (506)
T KOG1335|consen 272 GTKVTSATRNG--DGPV-EIEVENA-------------KTGKKETLECDVLLVSIGRRPFT-EGLGL-EKIGIELDKRGR 333 (506)
T ss_pred ccEEEEeeccC--CCce-EEEEEec-------------CCCceeEEEeeEEEEEccCcccc-cCCCh-hhcccccccccc
Confidence 99999988433 6544 3555442 25677899999999999999965 45555 567899999999
Q ss_pred eeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 368 v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|.++.. ++|.+|+||++||+..||.-.. .|-.+|..+.+.|..
T Consensus 334 v~v~~~--f~t~vP~i~~IGDv~~gpMLAh-kAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 334 VIVNTR--FQTKVPHIYAIGDVTLGPMLAH-KAEEEGIAAVEGIAG 376 (506)
T ss_pred eecccc--ccccCCceEEecccCCcchhhh-hhhhhchhheeeecc
Confidence 999986 7899999999999999998888 688999888877754
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=215.59 Aligned_cols=275 Identities=16% Similarity=0.186 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC----CC-hHHHHHH-HHHHHhcCCeEEEeCeEEce------EEE
Q 011535 33 YTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH----PE-TKIVINQ-FSRVVQHERCSFFGNVTLGS------SVS 100 (483)
Q Consensus 33 ~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~----~~-~~~~~~~-~~~~~~~~~v~~~~~~~v~~------~~~ 100 (483)
+||.+|++..++++|+|||+++.++. ..+++ |.+ .. .++.... ..+++...+++++.+..+.. .+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~-~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF-ANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE-EcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 47889988877899999999986421 11122 211 11 2222222 23455777899887755532 232
Q ss_pred ecc----eeec--cCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHH
Q 011535 101 LSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174 (483)
Q Consensus 101 ~~~----~~~~--yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~ 174 (483)
+.. .... ||+||||||+ .++.+++||.+.+++++...+..... . ...... ..+++|+|||+|++|+|+
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~-~p~~~~i~G~~~~~v~~~~~~~~~~~-~---~~~l~~-~~~~~vvViGgG~~g~e~ 152 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGA-SPIVPNIEGINLDIVFTLRNLEDTDA-I---KQYIDK-NKVENVVIIGGGYIGIEM 152 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHH-H---HHHHhh-cCCCeEEEECCCHHHHHH
Confidence 321 1234 9999999999 67778899987666665443221000 0 000000 146899999999999999
Q ss_pred HHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhh
Q 011535 175 ARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (483)
Q Consensus 175 A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (483)
|..|.+ .+ .+|+++.+.+.+.. .+.
T Consensus 153 A~~l~~--------------------~g-~~Vtli~~~~~~~~~~~~--------------------------------- 178 (427)
T TIGR03385 153 AEALRE--------------------RG-KNVTLIHRSERILNKLFD--------------------------------- 178 (427)
T ss_pred HHHHHh--------------------CC-CcEEEEECCcccCccccC---------------------------------
Confidence 998875 33 47999998865421 111
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEE
Q 011535 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333 (483)
Q Consensus 254 ~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i 333 (483)
+.....+.+.+. ++||+++++..+.++. . ++.+ +.+. +| .++
T Consensus 179 -~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~--~~~~--v~~~----------------~g--~~i 220 (427)
T TIGR03385 179 -EEMNQIVEEELK-------------KHEINLRLNEEVDSIE--G--EERV--KVFT----------------SG--GVY 220 (427)
T ss_pred -HHHHHHHHHHHH-------------HcCCEEEeCCEEEEEe--c--CCCE--EEEc----------------CC--CEE
Confidence 111222223332 6789999999999986 3 3332 2211 22 379
Q ss_pred ecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------chhHhhHHHH
Q 011535 334 DCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIATNLYCA 404 (483)
Q Consensus 334 ~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---------~~~~~a~~~g 404 (483)
++|.||+|+|++|+. ++.+..|+..+++|++.+|++ ++|+.|+|||+|||+..+. .....|.+||
T Consensus 221 ~~D~vi~a~G~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 294 (427)
T TIGR03385 221 QADMVILATGIKPNS----ELAKDSGLKLGETGAIWVNEK--FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMG 294 (427)
T ss_pred EeCEEEECCCccCCH----HHHHhcCcccCCCCCEEECCC--cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHH
Confidence 999999999999986 355667888888899999987 7799999999999985321 1233689999
Q ss_pred HHHHHHHHH
Q 011535 405 EETVASISE 413 (483)
Q Consensus 405 ~~~a~~I~~ 413 (483)
+.+|.||..
T Consensus 295 ~~~a~ni~g 303 (427)
T TIGR03385 295 RIAGENIAG 303 (427)
T ss_pred HHHHHHhcC
Confidence 999999863
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=205.63 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=111.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc---------c-----------------------CC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---------V-----------------------AP 66 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g---------~-----------------------~p 66 (483)
.|+|+|||||++||.+|+.|.+.| +++++||+++.+||++++. + .|
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 479999999999999999999999 9999999999999998642 0 12
Q ss_pred CCCChHHHHHHHHHHHhcCCe--EEEeCeEEce-------------EEEecc-e---eeccCEEEEccCCC-CCCCC--C
Q 011535 67 DHPETKIVINQFSRVVQHERC--SFFGNVTLGS-------------SVSLSE-L---RQLYHVVVLAYGAE-SDRAL--G 124 (483)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~-------------~~~~~~-~---~~~yd~vvlAtG~~-~~~~~--~ 124 (483)
.++...++.++++.++++.++ .+.+|+.|.. .++... + ...||+||+|||.. .|..| .
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 344557899999999998775 3667776632 233221 1 13599999999974 35544 3
Q ss_pred CCCCC--CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 125 IPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 125 ipg~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+||.+ ...++|+.+|.. + ..+ ++|+|+|||+|+||+|+|.+|++ .
T Consensus 159 ~~G~e~F~G~i~HS~~yr~-----~------~~f-~gKrVlVVG~g~Sg~DIa~el~~---------------------~ 205 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRD-----P------EPF-KGKRVLVVGGGNSGADIAVELSR---------------------V 205 (531)
T ss_dssp -CTGGGHCSEEEEGGG--T-----G------GGG-TTSEEEEESSSHHHHHHHHHHTT---------------------T
T ss_pred hhhhhcCCeeEEccccCcC-----h------hhc-CCCEEEEEeCCHhHHHHHHHHHH---------------------h
Confidence 78865 334677776542 1 123 78999999999999999999985 5
Q ss_pred ccEEEEEeecCccc
Q 011535 203 IRKVYLVGRRGPVQ 216 (483)
Q Consensus 203 ~~~V~li~r~~~~~ 216 (483)
+++|++..|++.+.
T Consensus 206 a~~v~~s~R~~~wv 219 (531)
T PF00743_consen 206 AKKVYLSTRRGAWV 219 (531)
T ss_dssp SCCEEEECC-----
T ss_pred cCCeEEEEeccccc
Confidence 67899999998654
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=179.59 Aligned_cols=292 Identities=19% Similarity=0.275 Sum_probs=186.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-CCC-------CC-ceecccCCCCC-----------------
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTP-------FG-LVRSGVAPDHP----------------- 69 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~~~-------gg-l~~~g~~p~~~----------------- 69 (483)
.+..++++|||||.+||+||+.++..| .+|.++|-- |.| || ....|++|...
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G--~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ky 93 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLG--AKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKY 93 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcC--CcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999 999998732 222 22 23444444210
Q ss_pred -------Ch----HHHHHHHHHHHhcCC----eEEEeCeEE---------ce---EEEeccee---eccCEEEEccCCCC
Q 011535 70 -------ET----KIVINQFSRVVQHER----CSFFGNVTL---------GS---SVSLSELR---QLYHVVVLAYGAES 119 (483)
Q Consensus 70 -------~~----~~~~~~~~~~~~~~~----v~~~~~~~v---------~~---~~~~~~~~---~~yd~vvlAtG~~~ 119 (483)
.. ..+.+..++..+..+ +.+....+. +. ..+...++ ..++.+|||||. +
T Consensus 94 GW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~-R 172 (503)
T KOG4716|consen 94 GWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL-R 172 (503)
T ss_pred CCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC-C
Confidence 00 012222333333322 111111110 00 11222222 247899999998 7
Q ss_pred CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 120 ~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
|+-|+|||...-+ .++.++.. . + . .+.+-+|||+|.+|+|||..|..
T Consensus 173 PrYp~IpG~~Ey~-ITSDDlFs----l------~--~-~PGkTLvVGa~YVaLECAgFL~g------------------- 219 (503)
T KOG4716|consen 173 PRYPDIPGAKEYG-ITSDDLFS----L------P--Y-EPGKTLVVGAGYVALECAGFLKG------------------- 219 (503)
T ss_pred CCCCCCCCceeee-eccccccc----c------c--C-CCCceEEEccceeeeehhhhHhh-------------------
Confidence 9999999954222 23333321 1 1 1 33456789999999999999985
Q ss_pred cCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011535 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~ 279 (483)
.+ -+|++..|+=.+ ..|. +.+.+.+.+++.
T Consensus 220 -fg-~~vtVmVRSI~L-rGFD--------------------------------------qdmae~v~~~m~--------- 249 (503)
T KOG4716|consen 220 -FG-YDVTVMVRSILL-RGFD--------------------------------------QDMAELVAEHME--------- 249 (503)
T ss_pred -cC-CCcEEEEEEeec-cccc--------------------------------------HHHHHHHHHHHH---------
Confidence 34 368888887321 1121 123345555554
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
++||+|.....|.+++.. +++++. |.... +.+++..+-+.|+|+||+|.++.. ..+.+ +..|
T Consensus 250 ~~Gikf~~~~vp~~Veq~--~~g~l~-v~~k~-------------t~t~~~~~~~ydTVl~AiGR~~~~-~~l~L-~~~G 311 (503)
T KOG4716|consen 250 ERGIKFLRKTVPERVEQI--DDGKLR-VFYKN-------------TNTGEEGEEEYDTVLWAIGRKALT-DDLNL-DNAG 311 (503)
T ss_pred HhCCceeecccceeeeec--cCCcEE-EEeec-------------ccccccccchhhhhhhhhccccch-hhcCC-Cccc
Confidence 789999988888888732 356532 22211 124444567899999999999865 33444 4678
Q ss_pred cccCC-CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 360 IVPNI-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 360 ~~~~~-~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+..|+ .|.|.+++. .+|++|+|||+||+..+..-..+.|+..|+.+|+.|..
T Consensus 312 Vk~n~ks~KI~v~~~--e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 312 VKTNEKSGKIPVDDE--EATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred eeecccCCccccChH--HhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 88865 588888886 78999999999999987666666899999999988765
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=158.72 Aligned_cols=156 Identities=26% Similarity=0.340 Sum_probs=102.4
Q ss_pred EEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecc------cCC---------------------------CC
Q 011535 23 CVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSG------VAP---------------------------DH 68 (483)
Q Consensus 23 vIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g------~~p---------------------------~~ 68 (483)
+|||||||||++|..|.+.+ .+ ++|||+++.+||.+... ..| .+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999999998 88 99999999888865420 001 12
Q ss_pred CChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce-eeccCEEEEccCC-CCCCCCCCCC-CCCCCeeecc
Q 011535 69 PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGA-ESDRALGIPG-EDLIGVHSAR 137 (483)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~-~~~~~~~ipg-~~~~~v~~a~ 137 (483)
+..+++..++++++++.++++..++.|.. .+++++. ...+|+||+|||. +.|+.|.++| .+. .+++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 23456778888899888888888877632 3566665 4569999999997 4577888888 433 444544
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++... .++ .+++|+|||+|++|+|+|..|++ .+ ++|+++.|++.
T Consensus 158 ~~~~~-----------~~~-~~k~V~VVG~G~SA~d~a~~l~~--------------------~g-~~V~~~~R~~~ 201 (203)
T PF13738_consen 158 DWRDP-----------EDF-KGKRVVVVGGGNSAVDIAYALAK--------------------AG-KSVTLVTRSPI 201 (203)
T ss_dssp G-STT-----------GGC-TTSEEEEE--SHHHHHHHHHHTT--------------------TC-SEEEEEESS--
T ss_pred hcCCh-----------hhc-CCCcEEEEcChHHHHHHHHHHHh--------------------hC-CEEEEEecCCC
Confidence 43211 122 67999999999999999999986 44 89999999864
|
... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=165.96 Aligned_cols=149 Identities=23% Similarity=0.352 Sum_probs=107.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc--------c---------------CCC-------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------V---------------APD------- 67 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g--------~---------------~p~------- 67 (483)
..++|+|||||||||.+|+.|.+.| +++++|||.+.+||++.|- - .|+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 4689999999999999999999999 9999999999999998764 0 011
Q ss_pred ---CCChHHHHHHHHHHHhcCCe--EEEeCeEEce---------EEEecce-----eeccCEEEEccCCCC-CCCCCCCC
Q 011535 68 ---HPETKIVINQFSRVVQHERC--SFFGNVTLGS---------SVSLSEL-----RQLYHVVVLAYGAES-DRALGIPG 127 (483)
Q Consensus 68 ---~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~---------~~~~~~~-----~~~yd~vvlAtG~~~-~~~~~ipg 127 (483)
++...++.+++..+++++++ .+.+++.+.+ .+...+. ..-||.|++|||-.. |+.|.++|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 13345788999999998874 3444542211 1222221 234999999999864 77777777
Q ss_pred C---CC-CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhc
Q 011535 128 E---DL-IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 128 ~---~~-~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
. .. ..++|+.++. . ++...+++|+|||.|+||+|++..++.
T Consensus 163 ~~~~~f~G~~iHS~~Yk-----~-------~e~f~~k~VlVIG~g~SG~DIs~d~~~ 207 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYK-----S-------PEKFRDKVVLVVGCGNSGMDISLDLLR 207 (448)
T ss_pred CchhhcCCcceehhhcc-----C-------cccccCceEEEECCCccHHHHHHHHHH
Confidence 3 22 2355555543 1 122378999999999999999999875
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-17 Score=166.43 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=175.0
Q ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC---ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--
Q 011535 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG---LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg---l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-- 96 (483)
++|||+|+||+++|..+.+..++.+++++...+.... ...+.+.........+..... .....++.+..++.+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 5899999999999999999888889998877754321 111112111112222222222 2234567777766552
Q ss_pred ----eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 97 ----SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 97 ----~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
+.+.+.++...||++++|||+. +..++ +....++++.+......... ......++++|||+|..|+
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa~-~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~vvG~G~~gl 149 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGAR-PRPPP--ISDWEGVVTLRLREDAEALK-------GGAEPPKDVVVVGAGPIGL 149 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCCc-ccCCC--ccccCceEEECCHHHHHHHH-------HHHhccCeEEEECCcHHHH
Confidence 2355555555699999999994 54443 44444454443322111100 0000247999999999999
Q ss_pred HHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHh
Q 011535 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (483)
Q Consensus 173 e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (483)
++|..+.+ .| .+|+++...+.....+..
T Consensus 150 e~A~~~~~--------------------~G-~~v~l~e~~~~~~~~~~~------------------------------- 177 (415)
T COG0446 150 EAAEAAAK--------------------RG-KKVTLIEAADRLGGQLLD------------------------------- 177 (415)
T ss_pred HHHHHHHH--------------------cC-CeEEEEEcccccchhhhh-------------------------------
Confidence 99999986 45 679999888765322210
Q ss_pred hccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEE
Q 011535 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFED 332 (483)
Q Consensus 253 ~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~ 332 (483)
+. +.+.+.+... .+||+++++..+.++. . ..+.+.... .. ......
T Consensus 178 --~~----~~~~~~~~l~---------~~gi~~~~~~~~~~i~--~-~~~~~~~~~-~~---------------~~~~~~ 223 (415)
T COG0446 178 --PE----VAEELAELLE---------KYGVELLLGTKVVGVE--G-KGNTLVVER-VV---------------GIDGEE 223 (415)
T ss_pred --HH----HHHHHHHHHH---------HCCcEEEeCCceEEEE--c-ccCcceeeE-EE---------------EeCCcE
Confidence 11 1122222222 6789999999999997 3 222222110 00 122348
Q ss_pred EecCeEEEeeecCCCCCCCCCccCCCC-cccCCCCeeeecCCCCCCcc-cCceeeeccCCCCCc------c---hhHhhH
Q 011535 333 LDCGMVLKSIGYKSVPVNGLPFDNHKG-IVPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGPT------G---IIATNL 401 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~~l~~~~~~g-~~~~~~G~v~v~~~~~~~t~-~p~vya~Gd~~~g~~------~---~~~~a~ 401 (483)
+++|+++.++|.+|+. .+..+.+ .....+|.+.++.. ++++ .++||++|||+..+. + ....+.
T Consensus 224 ~~~d~~~~~~g~~p~~----~l~~~~~~~~~~~~g~i~v~~~--~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~ 297 (415)
T COG0446 224 IKADLVIIGPGERPNV----VLANDALPGLALAGGAVLVDER--GGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAV 297 (415)
T ss_pred EEeeEEEEeecccccH----HHHhhCccceeccCCCEEEccc--cccCCCCCEEeccceEeeecccCCceeeeechhhHh
Confidence 9999999999999975 2333333 14556788999987 6676 999999999875321 1 122455
Q ss_pred HHHHHHHHHHHH
Q 011535 402 YCAEETVASISE 413 (483)
Q Consensus 402 ~~g~~~a~~I~~ 413 (483)
.++..++.++..
T Consensus 298 ~~~~i~~~~~~~ 309 (415)
T COG0446 298 AAGRIAAENIAG 309 (415)
T ss_pred hhhHHHHHHhcc
Confidence 666666666653
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=163.81 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=115.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecccC--------------CCCC--------ChH
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVA--------------PDHP--------ETK 72 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~~--------------p~~~--------~~~ 72 (483)
.....+|+|||||++||++|.+|.+.+ .. ++|||++..+||.+++... |..+ ...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 446789999999999999999999999 66 9999999999887554211 1111 111
Q ss_pred HHHHHHHHHHhcCC----eEEEeCeEEc--------eEEEeccee---eccCEEEEccCC-CCCCCCCCCCCC--CCCee
Q 011535 73 IVINQFSRVVQHER----CSFFGNVTLG--------SSVSLSELR---QLYHVVVLAYGA-ESDRALGIPGED--LIGVH 134 (483)
Q Consensus 73 ~~~~~~~~~~~~~~----v~~~~~~~v~--------~~~~~~~~~---~~yd~vvlAtG~-~~~~~~~ipg~~--~~~v~ 134 (483)
.+..++...++.++ +.|...+.+. ..++++.+. ..+|.||+|||. ..|..|.++|.+ ...++
T Consensus 83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 24444555555444 3444444331 124444433 239999999997 458888899976 23356
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
|+.++.+ +.++ .+|+|+|||+|+||+++|.+|.+ .+ ++|+++.|++.
T Consensus 163 HS~~~~~-----------~~~~-~GKrV~VIG~GaSA~di~~~l~~--------------------~g-a~vt~~qRs~~ 209 (443)
T COG2072 163 HSADWPN-----------PEDL-RGKRVLVIGAGASAVDIAPELAE--------------------VG-ASVTLSQRSPP 209 (443)
T ss_pred chhcCCC-----------cccc-CCCeEEEECCCccHHHHHHHHHh--------------------cC-CeeEEEecCCC
Confidence 6655442 1234 89999999999999999999996 45 89999999987
Q ss_pred cc
Q 011535 215 VQ 216 (483)
Q Consensus 215 ~~ 216 (483)
..
T Consensus 210 ~~ 211 (443)
T COG2072 210 HI 211 (443)
T ss_pred ce
Confidence 54
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=147.80 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=82.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
+.||++..+ .+.++.. . .++. ..|+.+++ -+|...++++|+|++++|+.|.+-.. .+....|
T Consensus 427 ~~gV~fIRG-rvaei~e-~-p~~~-l~V~~EdT-------------l~g~~~e~~~DLVVLa~Gmep~~g~~-kia~iLg 488 (622)
T COG1148 427 DYGVRFIRG-RVAEIAE-F-PKKK-LIVRVEDT-------------LTGEVKEIEADLVVLATGMEPSEGAK-KIAKILG 488 (622)
T ss_pred hhchhhhcC-ChHHhee-C-CCCe-eEEEEEec-------------cCccceecccceEEEeeccccCcchH-HHHHhcC
Confidence 567777644 4566662 2 3444 34555553 14566799999999999999854111 1234457
Q ss_pred cccCCCCeeeecCCC--CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 360 IVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~--~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
+..+++|++...+.. ...+..+|||.+|-+ .||.-+. .++.||..+|......+..+.
T Consensus 489 L~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a-qgPkdI~-~siaqa~aAA~kA~~~l~~g~ 548 (622)
T COG1148 489 LSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA-QGPKDIA-DSIAQAKAAAAKAAQLLGRGE 548 (622)
T ss_pred cccCCCCccccCCCCcccccccCCcEEEeecc-cCCccHH-HHHHHhHHHHHHHHHHhhcCc
Confidence 777888888755331 133677899999965 7899887 799999999998888887654
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=149.76 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=133.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC---CCceecc----c----------CC----------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSG----V----------AP---------------- 66 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~---ggl~~~g----~----------~p---------------- 66 (483)
.++++||.||++|+.|..|...+ +.++..||+.+.. -|++..+ + -|
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 58999999999999999999886 6899999988752 2333221 0 01
Q ss_pred --------CCCChHHHHHHHHHHHhcCCeEEEeCeEEce------------EEEec-----ceeeccCEEEEccCCCCCC
Q 011535 67 --------DHPETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLS-----ELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 67 --------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~------------~~~~~-----~~~~~yd~vvlAtG~~~~~ 121 (483)
.++...++..++.+.+++..-.+..+..|.. .+.+. .....++.||||||. .|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~-~P~ 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG-QPR 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-----EE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC-CCC
Confidence 1234456667777777776543555555421 23331 112358999999996 455
Q ss_pred CCCCC-CCC-CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 122 ALGIP-GED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 122 ~~~ip-g~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
.|... ... .+.|+++.++...... ....++|+|||||.+|.|++..|.+
T Consensus 161 iP~~~~~~~~~~~v~Hss~~~~~~~~----------~~~~~~V~VVGgGQSAAEi~~~L~~------------------- 211 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFHSSEYLSRIDQ----------SLAGKRVAVVGGGQSAAEIFLDLLR------------------- 211 (341)
T ss_dssp --GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHH-------------------
T ss_pred CCcchhhcCCCCCEEEehHhhhcccc----------ccCCCeEEEECCcHhHHHHHHHHHh-------------------
Confidence 44322 222 2679999888755432 1267899999999999999999986
Q ss_pred cCCccEEEEEeecCccc----ccC-----CHHHHHHHhcCCC-eeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHH
Q 011535 200 GSSIRKVYLVGRRGPVQ----AAC-----TAKELREILGIKN-LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAA 269 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~----~~f-----~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~ 269 (483)
..+..+|+++.|+.... ++| +++-...+..+|. .+..+....-..+ .....+.+.+++.+.+.+..
T Consensus 212 ~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n----y~~i~~~~l~~iy~~lY~~~ 287 (341)
T PF13434_consen 212 RGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN----YGGIDPDLLEAIYDRLYEQR 287 (341)
T ss_dssp H-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT----SSEB-HHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc----CCCCCHHHHHHHHHHHHHHH
Confidence 22336899999997543 233 2332222222211 0000000000000 00000223333334433222
Q ss_pred HhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecC
Q 011535 270 ASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (483)
Q Consensus 270 ~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 345 (483)
. ..+..+.++.++.+..+... +++.+ .+.+.+ ..+++..++++|.||+||||+
T Consensus 288 v-------~g~~~~~l~~~~~v~~~~~~--~~~~~-~l~~~~-------------~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 288 V-------SGRGRLRLLPNTEVTSAEQD--GDGGV-RLTLRH-------------RQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp H-------HT---SEEETTEEEEEEEEE--S-SSE-EEEEEE-------------TTT--EEEEEESEEEE---EE
T ss_pred h-------cCCCCeEEeCCCEEEEEEEC--CCCEE-EEEEEE-------------CCCCCeEEEecCEEEEcCCcc
Confidence 1 11345778888888888731 23433 344433 125667899999999999996
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=126.05 Aligned_cols=336 Identities=15% Similarity=0.135 Sum_probs=180.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC---CCceeccc--------------CC-------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSGV--------------AP------------- 66 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~---ggl~~~g~--------------~p------------- 66 (483)
....+++.||-||+.|+.|..|.... +.++..+|+.|.+ .|++..|. .|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 35679999999999999999998875 4789999999852 33332220 01
Q ss_pred -----------CCCChHHHHHHHHHHHhcCCeEEEeCeEEce----------E--EEecce-eeccCEEEEccCCCCCCC
Q 011535 67 -----------DHPETKIVINQFSRVVQHERCSFFGNVTLGS----------S--VSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 67 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----------~--~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.++...+...+..+.+... -.+.++..|.. . +...+. ...+..|||++|.+...|
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 1223334444555555544 34455555531 0 111122 235788999999853333
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+-+.....+.+|++.++.+... ++...+.|.|||+|.+|.|+...|..... ..
T Consensus 161 ~~f~~l~~~~vfHss~~~~~~~----------~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~-----------------~~ 213 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLERHP----------ELLQKRSVTVIGSGQSAAEIFLDLLNSQP-----------------PQ 213 (436)
T ss_pred hHHhCcCccceeehHHHHHhhH----------HhhcCceEEEEcCCccHHHHHHHHHhCCC-----------------Cc
Confidence 3334444467999988774322 22133459999999999999999885211 01
Q ss_pred ccEEEEEeecCccc----ccCCHHHHHHHhcCCCeeEEecccccc-CCCCcH-HHh----------hccHHHHHHHHHHH
Q 011535 203 IRKVYLVGRRGPVQ----AACTAKELREILGIKNLYVHIREDDLI-KSPTDE-EEM----------KNSRIQRRVYELLS 266 (483)
Q Consensus 203 ~~~V~li~r~~~~~----~~f~~~el~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~----------~~~~~~~r~~~~l~ 266 (483)
-.++.+|.|+.... ++|+..-+ . ....+++ .++... .++ .......++.+.|.
T Consensus 214 ~~~l~witR~~gf~p~d~Skf~~e~F----~-------P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY 282 (436)
T COG3486 214 DYQLNWITRSSGFLPMDYSKFGLEYF----S-------PEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLY 282 (436)
T ss_pred CccceeeeccCCCCccccchhhhhhc----C-------chhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHH
Confidence 12588899985322 33332100 0 0000000 000000 000 01233334444444
Q ss_pred HHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 267 KAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 267 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.. -...+..+.++..+.+..+++.+ +|++ .+.+... .+++.+++++|.||+||||+.
T Consensus 283 ~~~------l~~~~~~v~l~~~~ev~~~~~~G--~g~~-~l~~~~~-------------~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 283 EQS------LGGRKPDVRLLSLSEVQSVEPAG--DGRY-RLTLRHH-------------ETGELETVETDAVILATGYRR 340 (436)
T ss_pred HHH------hcCCCCCeeeccccceeeeecCC--CceE-EEEEeec-------------cCCCceEEEeeEEEEeccccc
Confidence 331 23346778899999999998433 4542 3443331 267778999999999999994
Q ss_pred CCCCCCCccCCC--CcccCCCCeeeecCCCCCC---cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 347 VPVNGLPFDNHK--GIVPNIRGRVLKNISGDSS---QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 347 ~~~~~l~~~~~~--g~~~~~~G~v~v~~~~~~~---t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.. + .|++.. .+..+++|+..++.+.-.. ...-.||+.|=+-+ ..|+-..-..-+..=+..|++.|.+.
T Consensus 341 ~~-P--~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h-tHGig~pdLsl~a~Raa~I~~~L~g~ 413 (436)
T COG3486 341 AV-P--SFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH-THGIGAPDLSLGAWRAAVILNSLLGR 413 (436)
T ss_pred CC-c--hhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc-ccccCCccchHHHHHHHHHHHHHhCc
Confidence 32 1 122211 1233444554444431011 11235999996642 33333222333333344566666553
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=138.79 Aligned_cols=298 Identities=15% Similarity=0.184 Sum_probs=169.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC-CC-------CceecccCCC-----------------CCChH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PF-------GLVRSGVAPD-----------------HPETK 72 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~-~g-------gl~~~g~~p~-----------------~~~~~ 72 (483)
....-+|||+|.+.++++.......++..|.+|...|. || -+|.|+- |. +..++
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecCC
Confidence 34567999999999998887777767799999977654 22 2333322 11 00111
Q ss_pred HHHHHHHHH--HhcCCeEEEeCeEE------ceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeee
Q 011535 73 IVINQFSRV--VQHERCSFFGNVTL------GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWY 143 (483)
Q Consensus 73 ~~~~~~~~~--~~~~~v~~~~~~~v------~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~ 143 (483)
.+...-+++ ..+-|+-+..+..+ .+.+.+.++. ..||.++||||. .|+.+..-....+.+.. -..++
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~-~Pk~l~~~~~A~~evk~---kit~f 331 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGV-RPKKLQVFEEASEEVKQ---KITYF 331 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCc-CcccchhhhhcCHHhhh---heeEE
Confidence 111111111 22335555554433 1235666665 479999999999 57665542222111211 11111
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec-CcccccCCHH
Q 011535 144 NGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR-GPVQAACTAK 222 (483)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~-~~~~~~f~~~ 222 (483)
..-.++..+..-+..-++|.|||+|..|-|+|..|.+ ..+..+. +|+-+... .++.
T Consensus 332 r~p~DF~rlek~~aek~siTIiGnGflgSELacsl~r----------------k~r~~g~-eV~QvF~Ek~nm~------ 388 (659)
T KOG1346|consen 332 RYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKR----------------KYRNEGV-EVHQVFEEKYNME------ 388 (659)
T ss_pred ecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHH----------------hhhccCc-EEEEeecccCChh------
Confidence 1111222222222234789999999999999999986 1222333 44443322 2110
Q ss_pred HHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC
Q 011535 223 ELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG 302 (483)
Q Consensus 223 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g 302 (483)
.....-+.+.-.+.++ +.||.++.+..+..+. . ..+
T Consensus 389 ----------------------------kiLPeyls~wt~ekir-------------~~GV~V~pna~v~sv~--~-~~~ 424 (659)
T KOG1346|consen 389 ----------------------------KILPEYLSQWTIEKIR-------------KGGVDVRPNAKVESVR--K-CCK 424 (659)
T ss_pred ----------------------------hhhHHHHHHHHHHHHH-------------hcCceeccchhhhhhh--h-hcc
Confidence 0000111111223332 6789998888877775 2 122
Q ss_pred ceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCC-CeeeecCCCCCCcccC
Q 011535 303 HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIR-GRVLKNISGDSSQVEN 381 (483)
Q Consensus 303 ~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~-G~v~v~~~~~~~t~~p 381 (483)
++ .++ ..++.++..|+|+.|+|-.||. .+.+..|+..+++ |.+.++..+ ..-.
T Consensus 425 nl-~lk------------------L~dG~~l~tD~vVvavG~ePN~----ela~~sgLeiD~~lGGfrvnaeL---~ar~ 478 (659)
T KOG1346|consen 425 NL-VLK------------------LSDGSELRTDLVVVAVGEEPNS----ELAEASGLEIDEKLGGFRVNAEL---KARE 478 (659)
T ss_pred ce-EEE------------------ecCCCeeeeeeEEEEecCCCch----hhcccccceeecccCcEEeehee---eccc
Confidence 22 122 2233489999999999999988 5667888888865 666777654 3458
Q ss_pred ceeeeccCCCCCcchh--------HhhHHHHHHHHHHHHH
Q 011535 382 GLYVCGWLKRGPTGII--------ATNLYCAEETVASISE 413 (483)
Q Consensus 382 ~vya~Gd~~~g~~~~~--------~~a~~~g~~~a~~I~~ 413 (483)
|||++||++.-..++. .+|+-.|+.+.+|+..
T Consensus 479 NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtg 518 (659)
T KOG1346|consen 479 NVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTG 518 (659)
T ss_pred ceeeecchhhhhcccccceeccccccceeeceeccccccc
Confidence 9999999985333332 2566677777777654
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=128.21 Aligned_cols=171 Identities=17% Similarity=0.164 Sum_probs=94.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccC------CC--CCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA------PD--HPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~------p~--~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
+.+|||||.||.+||..|+...|..+|.|+..++..-....|.-. .+ .....++-..+++++.+ +.- .+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~--v~~-~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND--VVT-WD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh--hhh-hc
Confidence 368999999999999999999999999999887653222111100 00 00001111112222211 000 00
Q ss_pred eEEceEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchH
Q 011535 93 VTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 93 ~~v~~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g 171 (483)
+. ...+.++++. ..|++|++|||. .|.. ...|.+ +.+..-++-.. ..-+...+...|.|.|+|+|-++
T Consensus 78 s~-ehci~t~~g~~~ky~kKOG~tg~-kPkl-q~E~~n-~~Iv~irDtDs-------aQllq~kl~kaK~VlilgnGgia 146 (334)
T KOG2755|consen 78 SS-EHCIHTQNGEKLKYFKLCLCTGY-KPKL-QVEGIN-PKIVGIRDTDS-------AQLLQCKLVKAKIVLILGNGGIA 146 (334)
T ss_pred cc-cceEEecCCceeeEEEEEEecCC-Ccce-eecCCC-ceEEEEecCcH-------HHHHHHHHhhcceEEEEecCchh
Confidence 00 1123444443 469999999998 4443 223322 11221111100 00001123468999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHh
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~ 228 (483)
+|++.++.. -+|++......+...|..+...+++
T Consensus 147 ~El~yElk~-----------------------~nv~w~ikd~~IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 147 MELTYELKI-----------------------LNVTWKIKDEGISATFFDPGAAEFY 180 (334)
T ss_pred HHHHHHhhc-----------------------ceeEEEecchhhhhcccCccHHHHh
Confidence 999999864 3577777666666666665555444
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-14 Score=133.31 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=61.8
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCC-CChHHHH--H--HHHHHHhcCCeEEEeC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDH-PETKIVI--N--QFSRVVQHERCSFFGN 92 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~-~~~~~~~--~--~~~~~~~~~~v~~~~~ 92 (483)
||+||||||||++||..|++.+ .+|+|+|+.+..+.. +........ ....... . .+.+.+...++++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--CeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeec
Confidence 6999999999999999999888 999999887643221 110000000 0000111 0 2333334567777544
Q ss_pred eEE-ceEE----------E-----e-cceeeccCEEEEccCCCCCCCCCCCCC
Q 011535 93 VTL-GSSV----------S-----L-SELRQLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 93 ~~v-~~~~----------~-----~-~~~~~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
..+ ..+. . . ......||+||||||+ .++.+++||.
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~i~g~ 130 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS-RPRTPNIPGE 130 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE-EEEEESSTTT
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCcc-ccceeecCCC
Confidence 322 1110 0 1 1223469999999997 5777788886
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=121.76 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=82.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
++.|.+.+....++|. . +.+.. .|+.. + ..|..++++.+++-...-.++.. +...+.
T Consensus 248 ~rni~vn~krnLiEV~--~--~~~~A--vFe~L-------~-----kPG~t~ei~yslLHv~Ppms~pe-----~l~~s~ 304 (446)
T KOG3851|consen 248 ERNITVNYKRNLIEVR--T--NDRKA--VFENL-------D-----KPGVTEEIEYSLLHVTPPMSTPE-----VLANSD 304 (446)
T ss_pred hcceEeeeccceEEEe--c--cchhh--HHHhc-------C-----CCCceeEEeeeeeeccCCCCChh-----hhhcCc
Confidence 7889999999999997 4 33322 22221 0 13777899999999876665533 333333
Q ss_pred cccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc-hhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG-IIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~-~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
..+..|++-||....|++..|+||++|||.+.|.. ..+....|+..+-.||...+++...
T Consensus 305 -~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~p 365 (446)
T KOG3851|consen 305 -LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRP 365 (446)
T ss_pred -ccCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCc
Confidence 35678999888765477889999999999987653 3334567888899999999987643
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-10 Score=113.87 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=36.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC-CCCeEEEEecCCCCCCceec
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~-~~~~v~lie~~~~~ggl~~~ 62 (483)
+++|+|||+|++|+++|.+|++.. ++..|.|||+.+..|.-+.|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 368999999999999999999986 44459999999887765444
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=118.12 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=73.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC-----------
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP----------- 348 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~----------- 348 (483)
+.|+.++++..+.++. . +++.+..+. .. .+....+++|.||+|+|..+..
T Consensus 271 ~~Gv~I~~g~~V~~v~--~-~~~~V~~v~-~~---------------~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~E 331 (422)
T PRK05329 271 RLGGRIMPGDEVLGAE--F-EGGRVTAVW-TR---------------NHGDIPLRARHFVLATGSFFSGGLVAERDGIRE 331 (422)
T ss_pred hCCCEEEeCCEEEEEE--E-eCCEEEEEE-ee---------------CCceEEEECCEEEEeCCCcccCceeccCCcccc
Confidence 6789999999999887 3 244443332 11 2344579999999999976432
Q ss_pred -CCCCCcc-------------------CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcch-----hHhhHHH
Q 011535 349 -VNGLPFD-------------------NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI-----IATNLYC 403 (483)
Q Consensus 349 -~~~l~~~-------------------~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~-----~~~a~~~ 403 (483)
+.+++.. ...|+.+|+.-+++ +.. ..+..+||||+|++..|...+ .+.|+..
T Consensus 332 pif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~-~~~--g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~t 408 (422)
T PRK05329 332 PIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPL-DSQ--GGPVIENLYAAGAVLGGYDPIREGCGSGVALAT 408 (422)
T ss_pred ccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcc-cCC--CCeeccceEEeeehhcCCchHHhCCCchhHHHH
Confidence 1122110 24566666654433 222 456789999999998765432 1358899
Q ss_pred HHHHHHHHHHHH
Q 011535 404 AEETVASISEDL 415 (483)
Q Consensus 404 g~~~a~~I~~~l 415 (483)
|..++++|.+..
T Consensus 409 a~~a~~~~~~~~ 420 (422)
T PRK05329 409 ALHAAEQIAEEA 420 (422)
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-12 Score=129.45 Aligned_cols=418 Identities=25% Similarity=0.262 Sum_probs=238.2
Q ss_pred CCeEEEECccH-HHHHHHHHHHhcCC--CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~-aGl~aA~~l~~~~~--~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..+.+++|.++ ++++.|.++...++ ...+-+.+.-|.+.+++++|. .|+..+.+...+.--.-..++-+..+...
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~g~--~~~a~~~i~~tn~~p~~~gRvcp~~~~ce 82 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKLIHKTNNLPAITGRVCPLGNLCE 82 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCCccccCCcCCCcCCCHHHHHhcCC--cHHHHHHHHHhCCCccccCccCCCCCcee
Confidence 57899999999 99999999999872 113555666677788888776 33333333222211111123444444455
Q ss_pred ceEEEe-cceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHH
Q 011535 96 GSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174 (483)
Q Consensus 96 ~~~~~~-~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~ 174 (483)
+..+.. .+....|+.|..++|....+...+++. .++.. .+++|+|||+|+.|+.+
T Consensus 83 g~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~-~~~~~-----------------------tg~~VaviGaGPAGl~~ 138 (457)
T COG0493 83 GACVLGIEELPVNIGALERAIGDKADREGWIPGE-LPGSR-----------------------TGKKVAVIGAGPAGLAA 138 (457)
T ss_pred eeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCC-CCCCC-----------------------CCCEEEEECCCchHhhh
Confidence 544443 445567888888888744444444443 22111 46899999999999999
Q ss_pred HHHHhcCCc---------------------cccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcC---
Q 011535 175 ARILLRPTE---------------------ELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI--- 230 (483)
Q Consensus 175 A~~L~~~~~---------------------~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~--- 230 (483)
|..|++... .+.++||.+..++.|+..| .++.+..+.+. .++.++|++.+..
T Consensus 139 a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G-v~~~~~~~vG~---~it~~~L~~e~Dav~l 214 (457)
T COG0493 139 ADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG-VEFKLNVRVGR---DITLEELLKEYDAVFL 214 (457)
T ss_pred HHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC-eEEEEcceECC---cCCHHHHHHhhCEEEE
Confidence 999887332 2356899999999999999 78888888874 4567777666521
Q ss_pred CCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEe
Q 011535 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~ 310 (483)
..-....+...+.-.....-....+.+.+...+.+..... ........++-|.+-++..+.++. . .....+.+..
T Consensus 215 ~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~-~~~~~~~gk~vvVIGgG~Ta~D~~--~--t~~r~Ga~~v 289 (457)
T COG0493 215 ATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAE-DRTPPAKGKRVVVIGGGDTAMDCA--G--TALRLGAKSV 289 (457)
T ss_pred eccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhccccc-ccCCCCCCCeEEEECCCCCHHHHH--H--HHhhcCCeEE
Confidence 1111111111111111101111111222111122221110 001111224455555666655554 2 1111112111
Q ss_pred eeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCC
Q 011535 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (483)
Q Consensus 311 ~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~ 390 (483)
......+.. ..+....+++....+-..++...+ ..++....++..|++|+|..... ....++-|..||..
T Consensus 290 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~eeg~~--~~~~~~~~~~~~~e~GrV~~~~~---~~~~~~~~~~~~~r 359 (457)
T COG0493 290 TCFYREDRD-----DETNEWPTWAAQLEVRSAGEEGVE--RLPFVQPKAFIGNEGGRVTGVKF---GRVEPGEYVDGWGR 359 (457)
T ss_pred EEecccccc-----ccCCcccccchhhhhhhhhhcCCc--ccccCCceeEeecCCCcEeeeec---ccccccCccccccc
Confidence 111000000 012333467888889899988743 44677778888899999985542 23457889999999
Q ss_pred CCCcchhHhhHHHHHHHHHHHHHHHhcCcC---CCC-CCCCCCChhhHHHHHhcCCCcccchhhHHhhh-HHHHHccccC
Q 011535 391 RGPTGIIATNLYCAEETVASISEDLEQGVL---ASS-SGLPKPGREGLLQLLDNRNVRPVPFSAWEKID-SEEKRLGSLR 465 (483)
Q Consensus 391 ~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id-~~e~~~g~~~ 465 (483)
.+|.++.+........++..+......... ... ......+...+........+.. .|.+|..++ +.|+-.|...
T Consensus 360 ~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~-vfa~gD~~~g~~~vv~ai~e 438 (457)
T COG0493 360 RGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPG-VFAGGDAVRGAALVVWAIAE 438 (457)
T ss_pred ccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCC-eeeCceeccchhhhhhHHhh
Confidence 999888765555555555444442211100 000 0001112222333332445555 999999999 9999999999
Q ss_pred CCCcccccCHHHHHhhh
Q 011535 466 NKPKEKLTTYEDLLKVA 482 (483)
Q Consensus 466 ~~~r~k~~~~~~~~~~~ 482 (483)
||.+.|+++.+.|+..+
T Consensus 439 Gr~aak~i~~~~l~~~~ 455 (457)
T COG0493 439 GREAAKAIDKELLLGKA 455 (457)
T ss_pred chHHHHhhhHHHHhhcc
Confidence 99999999999998653
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-09 Score=111.10 Aligned_cols=182 Identities=13% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---------------CCC----------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---------------APD---------------- 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---------------~p~---------------- 67 (483)
+++|+||||||+|+++|.+|.+....++|+|||+++.+|.-+.|.. +|.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 3689999999999999999998765689999999877763221110 000
Q ss_pred ---------------CCCh-------HHHHHHHHHHHhcCC--eEEEeCeEEce--------EEEecc--eeeccCEEEE
Q 011535 68 ---------------HPET-------KIVINQFSRVVQHER--CSFFGNVTLGS--------SVSLSE--LRQLYHVVVL 113 (483)
Q Consensus 68 ---------------~~~~-------~~~~~~~~~~~~~~~--v~~~~~~~v~~--------~~~~~~--~~~~yd~vvl 113 (483)
+... .++...+.+.+...| +.++.+..|.. .+++.+ ....+|.||+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0000 011111222223334 56665544321 233322 1246999999
Q ss_pred ccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchH
Q 011535 114 AYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193 (483)
Q Consensus 114 AtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~ 193 (483)
|||...+..+ ++. ++.+ ... ++ ....... .+.+|+|+|.|.+++|++..|......|..++=...
T Consensus 161 AtGh~~p~~~--~~~--~~yi-~~p-------w~--~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~ 225 (534)
T PRK09897 161 ATGHVWPDEE--EAT--RTYF-PSP-------WS--GLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHV 225 (534)
T ss_pred CCCCCCCCCC--hhh--cccc-CCC-------Cc--chhhcCC-CCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcc
Confidence 9997433221 111 1111 111 11 0111122 368999999999999999999864333433221111
Q ss_pred HHHHHhcCCccEEEEEeecCcc
Q 011535 194 AWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 194 ~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.+.........+|++++|++..
T Consensus 226 ~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 226 VFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred eeeecCCCCCceEEEEeCCCCC
Confidence 1111111233589999999863
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=98.10 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=73.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee------------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR------------------------------------ 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~------------------------------------ 61 (483)
..++|+|||||||||.||..+++.+ .+|+|||+.+.+|--++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 4579999999999999999999999 99999999987642110
Q ss_pred -----------cc----------cCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--------eEEEecce-eeccCEE
Q 011535 62 -----------SG----------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL-RQLYHVV 111 (483)
Q Consensus 62 -----------~g----------~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~--------~~~~~~~~-~~~yd~v 111 (483)
+| +.|.-.....+++.+...++..|++++.++.+. ..+++.++ ...+|.|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 11 223323445677777778888899999988763 23455566 4679999
Q ss_pred EEccCC
Q 011535 112 VLAYGA 117 (483)
Q Consensus 112 vlAtG~ 117 (483)
|||||.
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999996
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=101.45 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=56.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-----------e---------e------------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-----------V---------R------------------ 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-----------~---------~------------------ 61 (483)
++|+|||||||||.||..|++.+ .+|+|+|+++.+|-- . .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 58999999999999999999999 999999999765410 0 0
Q ss_pred ----------cc----------cCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce---------EEEe-cceeeccCEE
Q 011535 62 ----------SG----------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSL-SELRQLYHVV 111 (483)
Q Consensus 62 ----------~g----------~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~---------~~~~-~~~~~~yd~v 111 (483)
.| +.|......++.+.+.+.+++.++++++++.+.. .+.. ......+|.|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 01 1122123345667777778888999999887632 2344 3334569999
Q ss_pred EEccCCC
Q 011535 112 VLAYGAE 118 (483)
Q Consensus 112 vlAtG~~ 118 (483)
|||||..
T Consensus 159 ILAtGG~ 165 (409)
T PF03486_consen 159 ILATGGK 165 (409)
T ss_dssp EE----S
T ss_pred EEecCCC
Confidence 9999974
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-06 Score=86.73 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|++|+++|..+.+.+ .+|.|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g--~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 47999999999999999999998 9999999874
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.5e-08 Score=91.22 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=60.3
Q ss_pred hhhhhhhhhccC-CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------------------
Q 011535 4 ARAWLSRSFTAL-SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-------------------- 62 (483)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-------------------- 62 (483)
++..+.+++... .....+|+||||||||++||++|++.+ ++|+|+|+.+.++|.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~ 86 (257)
T PRK04176 9 TRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDE 86 (257)
T ss_pred HHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCCccccCccccccccchHHHHHHHHH
Confidence 344444444332 234579999999999999999999998 999999999887653211
Q ss_pred -cc-----CCCC--CChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 63 -GV-----APDH--PETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 63 -g~-----~p~~--~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++ .+++ ....++...+.+.+...|++++.++.+
T Consensus 87 ~gv~~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V 127 (257)
T PRK04176 87 FGIRYKEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSV 127 (257)
T ss_pred CCCCceeecCcceeccHHHHHHHHHHHHHHcCCEEEcCcee
Confidence 11 0111 123345556666777788998888665
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=72.48 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=56.4
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+++|||+|++|+|+|..|.+ .+ .+|+++.|++.+...+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--------------------~g-~~vtli~~~~~~~~~~~-------------------- 39 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--------------------LG-KEVTLIERSDRLLPGFD-------------------- 39 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TT-SEEEEEESSSSSSTTSS--------------------
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------hC-cEEEEEeccchhhhhcC--------------------
Confidence 68999999999999999986 34 68999999987652222
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEee
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~ 311 (483)
+...+.+.+.+. ++||+++++..+.++. .++++ +. |++++
T Consensus 40 --------------~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 40 --------------PDAAKILEEYLR-------------KRGVEVHTNTKVKEIE--KDGDG-VE-VTLED 79 (80)
T ss_dssp --------------HHHHHHHHHHHH-------------HTTEEEEESEEEEEEE--EETTS-EE-EEEET
T ss_pred --------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE--EeCCE-EE-EEEec
Confidence 122222333443 6799999999999998 42344 66 76653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.9e-07 Score=86.40 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=41.5
Q ss_pred hhhhhhhhhccC-CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 4 ARAWLSRSFTAL-SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|..+.+.+... .....+|+||||||||++||+.|++.+ .+|+|+|+++.+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Gg 58 (254)
T TIGR00292 5 SRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGG 58 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 344444443332 234689999999999999999999999 99999999988754
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=82.29 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...+|+||||||+||+||++|++.+ ++|+|||++-.+||-+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCccc
Confidence 4579999999999999999999999 99999999988876544
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.7e-07 Score=80.07 Aligned_cols=44 Identities=36% Similarity=0.487 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g 63 (483)
...+|+|||||||||+||++|++.+ ++|.+||++..+||.+..|
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~~G 59 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMWGG 59 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTTS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCcccccc
Confidence 4579999999999999999999999 9999999998887755433
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=89.51 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=67.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-c---------cCCCCC------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---------VAPDHP------------------ 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g---------~~p~~~------------------ 69 (483)
..++|+||||||||.+||+.|++.| ++|+|+|+.+.+|..... + +.|...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 4689999999999999999999999 999999998776532111 0 011110
Q ss_pred -------------ChHHHHHHHHHHHhcCCeEEEeCeEEceEEEec--------c--eeeccCEEEEccCCC
Q 011535 70 -------------ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLS--------E--LRQLYHVVVLAYGAE 118 (483)
Q Consensus 70 -------------~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~--------~--~~~~yd~vvlAtG~~ 118 (483)
....+...+.+.+.+.|.+++.++.+....... . ....+++||.|+|+.
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 012333445666777888888887764322211 1 134699999999974
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.6e-07 Score=95.41 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||+|+||++||..+++++ .+|+|+||.+..||..
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcc
Confidence 3579999999999999999999999 9999999998877653
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-07 Score=67.94 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.6
Q ss_pred EECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 24 IIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
|||||++||++|..|++.+ .+|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeE
Confidence 8999999999999999998 999999999999987653
|
... |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=84.36 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=64.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-------------------------------c---cC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-------------------------------G---VA 65 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-------------------------------g---~~ 65 (483)
++|+||||||||+++|..|++.+ .+|+|||+.+.+...... + ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 47999999999999999999998 999999999764321100 0 00
Q ss_pred CC------CCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecc--eeeccCEEEEccCCC
Q 011535 66 PD------HPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE--LRQLYHVVVLAYGAE 118 (483)
Q Consensus 66 p~------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~--~~~~yd~vvlAtG~~ 118 (483)
+. ......+...+.+.+...+++++.++.+.. .+.+.+ ....+|+||+|+|..
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 00 011234555666777777899888766532 122222 234689999999974
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-06 Score=85.57 Aligned_cols=100 Identities=24% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-----CCcee-----ccc-------CCC------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-----FGLVR-----SGV-------APD------------ 67 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-----ggl~~-----~g~-------~p~------------ 67 (483)
....+|+||||||||+++|..|++.| ++|+|||+.+.. ++.+. .++ .+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~G--l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAG--LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCC--CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 34579999999999999999999998 999999987531 22110 000 000
Q ss_pred ----C--CChHHHHHHHHHHHhcCCeEEEeCeEEc-------eEEEecce-eeccCEEEEccCCC
Q 011535 68 ----H--PETKIVINQFSRVVQHERCSFFGNVTLG-------SSVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 68 ----~--~~~~~~~~~~~~~~~~~~v~~~~~~~v~-------~~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
+ ...+++...+.+.+...+++++...+.. ..++++++ ...+|.||.|+|..
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 0 1223444556666666788886443221 12444454 35799999999984
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-06 Score=83.17 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=35.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||||+||+.||+.|++. ++.+|+|||+...+||
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccccc
Confidence 357999999999999999999976 2399999999988765
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.7e-06 Score=64.15 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=54.2
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
+|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. +. ...++...+.+.+++.|++++.++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDRLL--------PG--FDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSSSS--------TT--SSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccchhh--------hh--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 6899999999999999999999 9999999998753 11 2235667778888888999999988743
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-05 Score=73.26 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=31.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+.+|+|||||.||++|+++|++.| .++.||.+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCC
Confidence 578999999999999999999999 999999876
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-05 Score=73.91 Aligned_cols=205 Identities=20% Similarity=0.227 Sum_probs=110.7
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccC-------C----HHHHHHHh
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC-------T----AKELREIL 228 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f-------~----~~el~~~~ 228 (483)
-+|+|||+|++|+-+|..|++ .+ .+|.++.++......+ . ..+..+++
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~--------------------~G-~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l 84 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAK--------------------AG-LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEIL 84 (257)
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CC-CeEEEEecCCCCCCccccCccccccccchHHHHHHH
Confidence 479999999999999999986 34 4689999875432211 0 11222222
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEE
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~ 308 (483)
.--++.+......+... . ...+...|.+.+. +.|+++++++.+..+. .++++++.++.
T Consensus 85 ~~~gv~~~~~~~g~~~v---------d--~~~l~~~L~~~A~---------~~Gv~I~~~t~V~dl~--~~~~g~V~Gvv 142 (257)
T PRK04176 85 DEFGIRYKEVEDGLYVA---------D--SVEAAAKLAAAAI---------DAGAKIFNGVSVEDVI--LREDPRVAGVV 142 (257)
T ss_pred HHCCCCceeecCcceec---------c--HHHHHHHHHHHHH---------HcCCEEEcCceeceee--EeCCCcEEEEE
Confidence 21122222111110000 0 1233344444443 5689999999998886 31244777776
Q ss_pred EeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC---------CCCCccCCCCcccCCCCeeeecCCCCCCcc
Q 011535 309 FEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV---------NGLPFDNHKGIVPNIRGRVLKNISGDSSQV 379 (483)
Q Consensus 309 ~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~---------~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~ 379 (483)
........ .+. ..+..++.|+.||.|+|...... .............+.....+++. ...-
T Consensus 143 ~~~~~v~~--~g~-----~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~---t~~~ 212 (257)
T PRK04176 143 INWTPVEM--AGL-----HVDPLTIEAKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVEN---TGEV 212 (257)
T ss_pred Eccccccc--cCC-----CCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhc---CCeE
Confidence 54311100 010 12335899999999999654221 00001111122222222333333 2346
Q ss_pred cCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHHhc
Q 011535 380 ENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 380 ~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
+||+|++|-.++ +| .| +++.=.-.|+.+|+-|++.|..
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 899999998763 22 23 3332356899999999988764
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-06 Score=85.66 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|+||||||||++||..|+++| ++|+|+|+.+.++
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence 4589999999999999999999999 9999999987653
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.8e-06 Score=84.00 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=34.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+||||||||++||+.|++.| ++|+|||+.+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCC
Confidence 4589999999999999999999999 999999998764
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.8e-06 Score=81.86 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+||||||||+++|..|.+.+ ++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 3579999999999999999999999 99999998864
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.4e-06 Score=82.43 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=61.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc------------------------C-CCC-------
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------------------------A-PDH------- 68 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~------------------------~-p~~------- 68 (483)
+|+||||||||+++|..|++.+ .+|+|||+.+..++...+++ . +..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 6999999999999999999998 99999999875443211110 0 110
Q ss_pred ---CChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce-eeccCEEEEccCCC
Q 011535 69 ---PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.....+...+.+.+...+++++.+..... .++..++ ...++.||.|+|..
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCc
Confidence 11233445555556666777765543321 1233333 34699999999984
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=82.05 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred EEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 23 CVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 23 vIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|||||+|||+||..|++.+ .+|+|+|+++.+|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccc
Confidence 69999999999999999998 99999999987654
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-05 Score=76.61 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|+|||+|.|||++|+.|.+. .+|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCC
Confidence 899999999999999999887 89999998864
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-05 Score=80.71 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.-+++++|||||+.|+..|..+.+.| .+|||+|+.+.+ .|. ...++...+.+.++..+++++.++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--~~VTiie~~~~i--------Lp~--~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRI--------LPG--EDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCC--------CCc--CCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 46789999999999999999999999 999999999874 243 345777888888888789999998763
Q ss_pred eE--------EEeccee---eccCEEEEccCCCCCCC
Q 011535 97 SS--------VSLSELR---QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 97 ~~--------~~~~~~~---~~yd~vvlAtG~~~~~~ 122 (483)
.. +.++++. ..+|.|++|+|. .|+.
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR-~Pn~ 274 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR-KPNT 274 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCC-ccCC
Confidence 21 3333332 359999999997 4544
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.5e-05 Score=77.70 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.++..+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLG--SKVTVIEMLDRIL--------PG--EDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCCCC--------CC--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4579999999999999999999998 9999999987642 22 1234556667777778999998876531
Q ss_pred ------E--EEecce---eeccCEEEEccCCCCCCC
Q 011535 98 ------S--VSLSEL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ------~--~~~~~~---~~~yd~vvlAtG~~~~~~ 122 (483)
. +...++ ...+|.||+|+|. .|..
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~-~p~~ 271 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGR-KPNT 271 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCC-cccC
Confidence 1 222223 3469999999998 3443
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.5e-06 Score=85.33 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=40.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||.|||+||++|.+.+|+++|+|||+++..||+++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5899999999999999999999999999999999999998764
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=85.32 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
...+|+|||+|++|+++|..+++.+ .+|+|||+.+.+||.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G--~~v~llEk~~~~gG~ 45 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRG--LSTVVVEKAPHYGGS 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCcc
Confidence 4579999999999999999999999 999999999877653
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.4e-05 Score=79.73 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=66.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|++.+ .+|+||++.+.+. |.. ..++...+.+.++..|++++.+..+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLG--SKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 4679999999999999999999998 9999999987642 221 234555566777778999998865522
Q ss_pred ------E--EEecceeeccCEEEEccCCCCCC
Q 011535 98 ------S--VSLSELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 98 ------~--~~~~~~~~~yd~vvlAtG~~~~~ 121 (483)
. +..+.....||.||+|+|. .|.
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~-~p~ 254 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGR-KPN 254 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCC-CCC
Confidence 1 1122223469999999998 344
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=87.50 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||||+++|..|++.+++++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 489999999999999999999855599999999875
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.4e-05 Score=78.55 Aligned_cols=34 Identities=47% Similarity=0.653 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||||++||..|++.| ++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCC
Confidence 48999999999999999999999 99999998743
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.5e-05 Score=79.72 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+..+|+||||||+|+.+|..|++.| ++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G--~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 4579999999999999999999999 99999998864
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.03 E-value=5e-05 Score=77.12 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|+||||||||+++|+.|++.| ++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 48999999999999999999999 999999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.1e-05 Score=78.56 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+||||||||+++|..|++.| ++|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 468999999999999999999998 999999998664
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.4e-05 Score=80.35 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+||||||+||++|..|+++| ++|+|||+.+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence 578999999999999999999999 999999998643
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=81.20 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=40.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p 66 (483)
+||+|+|||.|||+||+.|+++| ++|+|+|..+.+||.......+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s~~~~ 45 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVASWRDS 45 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCceeeeeecC
Confidence 58999999999999999999999 9999999999999987655433
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.4e-06 Score=84.47 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=38.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||+|||+||..|.+.|++++|+|+|+++.+||..+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 5799999999999999999998766899999999999997653
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.7e-05 Score=78.29 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=65.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~ 246 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFG--VEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLG 246 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEE
Confidence 3589999999999999999999998 9999999887641 321 234556677777788999998875522
Q ss_pred E----------EEecce---eeccCEEEEccCCC
Q 011535 98 S----------VSLSEL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~----------~~~~~~---~~~yd~vvlAtG~~ 118 (483)
. +...++ ...||.||+|+|..
T Consensus 247 i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 247 LTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred EEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 1 111122 24689999999983
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=78.38 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+||||||||+++|..|++.| ++|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G--l~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG--LNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEecCc
Confidence 3579999999999999999999998 999999975
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.6e-05 Score=78.92 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+||||||||+.||..+++.| .+|.|||+++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G--~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcC--CcEEEEeccc
Confidence 3589999999999999999999999 9999999984
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-05 Score=75.75 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=66.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +.. ....+...+.+.+++.|++++.+..+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAG--KAVTLVDNAASLL--------ASL-MPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCccc--------chh-CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4579999999999999999999998 9999999887642 111 1234556667777788999998766532
Q ss_pred --------EEEeccee-eccCEEEEccCCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 13333332 4699999999983
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-05 Score=76.70 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=67.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++++|||||++|+.+|..+.+.+ .+|+|+++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~ll--------~~--~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLG--TKVTIVEMAPQLL--------PG--EDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------cc--ccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4579999999999999999999998 9999999887642 22 1235666677777778999999876532
Q ss_pred ------EEEec-ce---eeccCEEEEccCCCCCCC
Q 011535 98 ------SVSLS-EL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ------~~~~~-~~---~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+. ++ ...||.|++|+|. .|+.
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~-~p~~ 270 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGR-KPRV 270 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCC-ccCC
Confidence 12221 11 2469999999997 3443
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=73.24 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=66.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+||++.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLG--AEVTILEALPAFL--------AAA--DEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCccC--------CcC--CHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 4589999999999999999999998 9999999987542 221 234556666667778999998865521
Q ss_pred --------EEEecc-----eeeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSE-----LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~-----~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.+ ....+|.|++|+|. .|..
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~-~p~~ 286 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR-VPNT 286 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC-ccCC
Confidence 122222 12469999999998 4443
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=75.95 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
...+|+|||+|++|+++|..+++++ .+|+|||+.+..||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCcc
Confidence 4679999999999999999999999 999999998876664
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.9e-05 Score=77.18 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..+++++.+..+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLG--AEVTIVEALPRIL--------PG--EDKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4579999999999999999999998 9999999987642 22 1235556677777788999999875521
Q ss_pred --------EEEecce----eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL----RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~----~~~yd~vvlAtG~~ 118 (483)
.+...+. ...+|.||+|+|..
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 1222222 24699999999983
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00023 Score=67.62 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=105.7
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc-------CC----HHHHHHHh
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------CT----AKELREIL 228 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~-------f~----~~el~~~~ 228 (483)
-+|+|||+|++|+-+|..|++ .+ .+|.++.|+...... |. ..+..+++
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~--------------------~G-~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l 80 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK--------------------NG-LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL 80 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence 469999999999999999986 44 479999988643211 11 01112222
Q ss_pred cCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC--ceEE
Q 011535 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSG 306 (483)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g--~v~~ 306 (483)
+.-++.+......+.. .. +..+.+.|.+.+. +.|+++++++.+.++. . +++ ++.+
T Consensus 81 ~~~gi~~~~~~~g~~~---------~~--~~el~~~L~~~a~---------e~GV~I~~~t~V~dli--~-~~~~~~V~G 137 (254)
T TIGR00292 81 DEFGIRYEDEGDGYVV---------AD--SAEFISTLASKAL---------QAGAKIFNGTSVEDLI--T-RDDTVGVAG 137 (254)
T ss_pred HHCCCCeeeccCceEE---------ee--HHHHHHHHHHHHH---------HcCCEEECCcEEEEEE--E-eCCCCceEE
Confidence 2112222111110000 00 1123344444433 5689999999999887 3 234 5777
Q ss_pred EEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC----CCCcc-------CCCCcccCCCCeeeecCCCC
Q 011535 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN----GLPFD-------NHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 307 v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~----~l~~~-------~~~g~~~~~~G~v~v~~~~~ 375 (483)
+......... .|. ..+..++++++||.|||....-.. .+++. ....+..+..-..+++.
T Consensus 138 Vv~~~~~v~~--~g~-----~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~--- 207 (254)
T TIGR00292 138 VVINWSAIEL--AGL-----HVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHEN--- 207 (254)
T ss_pred EEeCCccccc--cCC-----CCCCEEEEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhc---
Confidence 7664311100 010 112458999999999997642100 00000 00011111111112222
Q ss_pred CCcccCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDL 415 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l 415 (483)
...-+||+|++|-.++ .| .| +++.=+-.|+.+|+.|++.|
T Consensus 208 t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 208 TREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 2346899999998763 12 23 33323568889999888876
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.2e-05 Score=76.20 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+.+.. ....+...+.+.++..|++++.++.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--CKVTVIELAATVMGRN---------APPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCcchhhh---------cCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 3579999999999999999999998 9999999887643210 1224555666777778999998876532
Q ss_pred -------EEEeccee-eccCEEEEccCCC
Q 011535 98 -------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 -------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCCC
Confidence 12333332 4699999999984
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=77.38 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 368999999999999999999999 99999999864
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00011 Score=76.57 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++|+|||+|++|+.+|..|.+.+ .+|+++++.+.+. |.. ..++...+.+.++..+++++.++.+..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG--SEVTILQRSDRLL--------PRE--EPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCcCC--------Ccc--CHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 589999999999999999999999 9999999987642 221 234556677777778999999875521
Q ss_pred -------EEEecc----eeeccCEEEEccCCCCCCC
Q 011535 98 -------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~~~----~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.. ....+|.||+|+|. .|..
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~-~p~~ 268 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGR-RPNT 268 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECC-CcCC
Confidence 122211 23469999999998 3443
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=83.57 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||.||..|+++| ++|+|+|++..+||-.+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceE
Confidence 4589999999999999999999999 99999999999999654
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=73.29 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=31.6
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+||+|++|++ +|-.|.. .|+.||..++.|++..+.+.
T Consensus 354 ~~~~lf~AGqi-~G~~Gy~-eaaa~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 354 KIPGLFFAGQI-NGTEGYE-EAAAQGLIAGINAARRLQGK 391 (392)
T ss_dssp SSBTEEE-GGG-GTB-SHH-HHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCceECCCC-cchhHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 48999999999 5668877 79999999999999998764
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=82.66 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
.....++|+|||||.|||+||.+|...| ++|+|+|....+||-+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeEE
Confidence 3456789999999999999999999999 999999999999986543
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.4e-05 Score=76.75 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.+++.|++++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l~--------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG--LHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CcEEEEecccccc--------hh--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 579999999999999999999998 9999999887542 11 1235556677778888999998876632
Q ss_pred ---EEEecce-eeccCEEEEccCCC
Q 011535 98 ---SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ---~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.|++|+|..
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCCC
Confidence 2344333 24699999999983
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-05 Score=82.69 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||..|.+++ ++|+|+|+.+.+||.++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceee
Confidence 4678999999999999999999998 99999999999999764
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=75.22 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=67.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFG--SEVTVIERGPRLL--------PR--EDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCCC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4589999999999999999999998 9999999987643 22 1234556677777888999998865521
Q ss_pred --------EEEec---c-eeeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLS---E-LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~---~-~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+. + ....+|.||+|+|. .|+.
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~-~pn~ 273 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGR-VPNT 273 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCC-CcCC
Confidence 12221 1 13469999999998 3443
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=63.40 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=29.6
Q ss_pred EEECccHHHHHHHHHHHhcC---CCCeEEEEecCCC
Q 011535 23 CVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPT 55 (483)
Q Consensus 23 vIIG~G~aGl~aA~~l~~~~---~~~~v~lie~~~~ 55 (483)
+|||+||+|++++.+|.+.. +..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999999983 5699999999765
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=75.19 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gI~v~~~~~v~~ 216 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLG--KNVRIIQLEDRIL--------PDS-FDKEITDVMEEELRENGVELHLNEFVKS 216 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEeCCcccC--------chh-cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3579999999999999999999998 8999999876532 110 1245666777788888999998876632
Q ss_pred E--------EEecceeeccCEEEEccCCC
Q 011535 98 S--------VSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~--------~~~~~~~~~yd~vvlAtG~~ 118 (483)
. +..++....+|.|++|+|..
T Consensus 217 i~~~~~~~~v~~~~~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 217 LIGEDKVEGVVTDKGEYEADVVIVATGVK 245 (444)
T ss_pred EecCCcEEEEEeCCCEEEcCEEEECcCCC
Confidence 1 22233345799999999973
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=76.50 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=42.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
..++|+|+|||.+||++|++|++++|+..|+|||..++.||.++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 468999999999999999999999999999999999999998876
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=74.36 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.+++.|++++.+..+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFG--SKVTILEAASLFL--------PRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCC--------CCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4579999999999999999999998 9999999876531 332 234556677778888999998876532
Q ss_pred --------EEEecceeeccCEEEEccCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+...+....+|.|++|+|..
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~~ 253 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGRQ 253 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecCC
Confidence 122223345699999999983
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=74.51 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=65.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+.. +. ...++...+.+.++..|++++.+..+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRSERILN-------KL--FDEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccCc-------cc--cCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3579999999999999999999998 99999998875411 11 1234556677777888999998876532
Q ss_pred E------EEecce-eeccCEEEEccCCC
Q 011535 98 S------VSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~------~~~~~~-~~~yd~vvlAtG~~ 118 (483)
. +.+.++ ...||.||+|+|..
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCcc
Confidence 1 122222 34699999999983
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=74.57 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +.+ ..++...+.+.++..|++++.++.+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~gI~i~~~~~v~~ 232 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLG--SETHLVIRHERVL--------RSF--DSMISETITEEYEKEGINVHKLSKPVK 232 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------ccc--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 3589999999999999999999999 9999999887642 221 234556677777788999998865421
Q ss_pred ---------EEEecce--eeccCEEEEccCCCCCCC
Q 011535 98 ---------SVSLSEL--RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ---------~~~~~~~--~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|+.
T Consensus 233 i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~-~pn~ 267 (450)
T TIGR01421 233 VEKTVEGKLVIHFEDGKSIDDVDELIWAIGR-KPNT 267 (450)
T ss_pred EEEeCCceEEEEECCCcEEEEcCEEEEeeCC-CcCc
Confidence 1223333 2469999999998 3443
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=75.23 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=66.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALG--VKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987642 21 1235566677777778999998866532
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.|++|+|..
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 1222222 24699999999983
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=74.48 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..+.+.+ .+|+++++.+.+. +. ...++...+.+.++..|++++.+..+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLG--VQVTLIYRGELIL--------RG--FDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEeCCCCC--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4679999999999999999999998 9999999877541 22 1235556677777788999998865522
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.||+|+|..
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence 1222222 24699999999983
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=74.26 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=65.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++|+|||+|+.|+.+|..|.+.+ .+|+++++...+ |. ...++...+.+.+++.|++++.++.+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG--SRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999999 999999864311 21 1234566677778888999998866532
Q ss_pred -------EEEecceeeccCEEEEccCCCCCCC
Q 011535 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~~~~~~~yd~vvlAtG~~~~~~ 122 (483)
.+...+....+|.||+|+|. .|+.
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 275 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGR-TPNT 275 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCC-CCCc
Confidence 12222334579999999998 3443
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.7e-05 Score=79.97 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCcee
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~~ 61 (483)
....++++|||||.|||+||.+|.+.+ ++.+|+|+|+.+.+||.+.
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 345689999999999999999999975 5699999999999998764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=74.38 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=66.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYG--VDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3579999999999999999999998 9999999876532 332 234566677778888999999876521
Q ss_pred --------EEEec--ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.|++|+|.
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 12222 22 2469999999997
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.7e-05 Score=80.01 Aligned_cols=39 Identities=36% Similarity=0.429 Sum_probs=32.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+||||||||||++||..+++.| .+|+|||+.+.+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcce
Confidence 6999999999999999999999 99999999999988654
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.1e-05 Score=80.56 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCC--CCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~--~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||+|||+||..|.+++| +.+|+|+|+.+.+||.++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 4689999999999999999999833 399999999999998765
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3e-05 Score=79.85 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.8
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|||||+|||+||..|++.| .+|+|+|+.+.+||...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCcee
Confidence 6899999999999999999999 99999999999999764
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00026 Score=73.36 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.++..|++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLG--SETHLFVRGDAPL--------RG--FDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCc--------cc--cCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 4589999999999999999999998 9999999877532 21 1235666677778888999998876532
Q ss_pred E---------EEeccee-eccCEEEEccCC
Q 011535 98 S---------VSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 ~---------~~~~~~~-~~yd~vvlAtG~ 117 (483)
- +.+.++. ..+|.||+|+|.
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence 1 2222222 469999999997
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=73.75 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++++|||+|++|+.+|..|+++| ++|+++|+.+.+++.+.. .++...+.+.++..+++++.+..+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 689999999999999999999999 999999999988765431 45667788888888899888766421
Q ss_pred E----------EEecc-eeeccCEEEEccCCC
Q 011535 98 S----------VSLSE-LRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~----------~~~~~-~~~~yd~vvlAtG~~ 118 (483)
+ ..... ....+|.+++++|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 1 11222 224699999999983
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.1e-05 Score=80.45 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=38.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||++|.+. + .+|+|+|+.+.+||.++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCcee
Confidence 456899999999999999999999 8 99999999999999765
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=72.79 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=70.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCC-----------CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQ-----------EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~-----------~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~ 88 (483)
..|+||||||.|+.+|-.|+...+ +++|+|+|+.|.. .|.+ .+++..+.++.+++.||+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------Lp~~--~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------LPMF--PPKLSKYAERALEKLGVE 225 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------ccCC--CHHHHHHHHHHHHHCCCE
Confidence 479999999999999998876431 3599999998863 3553 346777888889999999
Q ss_pred EEeCeEEce----EEEeccee--eccCEEEEccCCCC
Q 011535 89 FFGNVTLGS----SVSLSELR--QLYHVVVLAYGAES 119 (483)
Q Consensus 89 ~~~~~~v~~----~~~~~~~~--~~yd~vvlAtG~~~ 119 (483)
+..++.|.. .++++++. ..++.+|-|+|...
T Consensus 226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcC
Confidence 999988743 35665554 68999999999843
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=72.69 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..+.+.+ .+|+|||+.+.+. |.. ..++...+.+.++..|++++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G--~~Vtlie~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLG--AQVTVVEYLDRIC--------PGT--DTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCCCC--------CCC--CHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 4689999999999999999999999 9999999877542 321 234556677777778999998865521
Q ss_pred --------EEEec---c---eeeccCEEEEccCCC
Q 011535 98 --------SVSLS---E---LRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~---~---~~~~yd~vvlAtG~~ 118 (483)
.+.+. + ....+|.|++|+|..
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 11221 1 124689999999983
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.4e-05 Score=76.85 Aligned_cols=35 Identities=43% Similarity=0.702 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhcccc
Confidence 58999999999999999999999 999999998653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=4e-05 Score=77.83 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+..++|+||||||||+++|..|+++| ++|+|||+.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCcc
Confidence 34579999999999999999999999 999999998754
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.7e-05 Score=79.27 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=37.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||.|||+||+.|.+.+ ++.+|+|+|+.+++||..+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 58999999999999999999863 24899999999999998653
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.4e-05 Score=80.15 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||++||+||..|++.| .+|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence 68999999999999999999999 99999999999998754
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=73.03 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=64.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++|+|||+|+.|+.+|..|.+.+ .+|+|+++... + +. ...++...+.+.++..|++++.++.+..
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~----l-----~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLG--SRVTILARSTL----L-----FR--EDPLLGETLTACFEKEGIEVLNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCC----C-----Cc--chHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence 589999999999999999999998 99999987421 1 22 1234566677778888999998876532
Q ss_pred -------EEEecceeeccCEEEEccCCC
Q 011535 98 -------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 -------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+...+....+|.||+|+|..
T Consensus 255 ~~~~~~~~v~~~~g~i~aD~VlvA~G~~ 282 (479)
T PRK14727 255 EHDDNGFVLTTGHGELRAEKLLISTGRH 282 (479)
T ss_pred EEeCCEEEEEEcCCeEEeCEEEEccCCC
Confidence 122233345699999999983
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00033 Score=73.50 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=65.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||+|+.|+.+|..+.+.+ .+|+|+++.+.+. +. ...++...+.+.++..|++++.++.+..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMG--ATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999998 9999999877532 22 1235566677777788999999876532
Q ss_pred -------EEEecce-eeccCEEEEccCCC
Q 011535 98 -------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 -------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+...++ ...+|.|++|+|..
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 1222222 24699999999983
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.8e-05 Score=78.55 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=37.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
++|+|||||.|||+||+.|.+.+ ++|+|+|+.+++||-+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceeee
Confidence 47999999999999999999998 999999999999997653
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.9e-05 Score=78.48 Aligned_cols=38 Identities=42% Similarity=0.575 Sum_probs=34.3
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++...++|+||||||||+++|..|++.| ++|+|+|+.+
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3445689999999999999999999999 9999999875
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00034 Score=72.48 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+..+ .+++++.+..+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~l~~-~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSALG--VRVTVVNRSGRLL--------RH--LDDDISERFTELAS-KRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHh-cCeEEEeCCEEEE
Confidence 4689999999999999999999998 9999999987642 21 12234444554443 4799988876522
Q ss_pred --------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|..
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 264 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGR-VPNG 264 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECC-ccCc
Confidence 1222232 2469999999998 3443
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-05 Score=78.05 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCcc
Confidence 34689999999999999999999999 999999998753
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00032 Score=74.95 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+. + +. ...++...+.+.++..|++++.++.+..
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~----l-----~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~ 335 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLG--SKVTILARSTL----F-----FR--EDPAIGEAVTAAFRAEGIEVLEHTQASQ 335 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCcc----c-----cc--cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3589999999999999999999999 99999997531 1 22 1235566677778888999998876532
Q ss_pred E--------EEecceeeccCEEEEccCCCCCCC
Q 011535 98 S--------VSLSELRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ~--------~~~~~~~~~yd~vvlAtG~~~~~~ 122 (483)
. +...+....+|.|++|+|. .|+.
T Consensus 336 i~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 367 (561)
T PRK13748 336 VAHVDGEFVLTTGHGELRADKLLVATGR-APNT 367 (561)
T ss_pred EEecCCEEEEEecCCeEEeCEEEEccCC-CcCC
Confidence 1 2222334579999999998 4443
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0012 Score=65.02 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=71.5
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC-CCCCccCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV-NGLPFDNHK 358 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~-~~l~~~~~~ 358 (483)
..+++++....+.+++ . +++++.++.+..........+. ...+...+.++.||+|||-.+... ....+....
T Consensus 185 ~~gVkI~~~t~V~DLI--~-~~grVaGVVvnw~~v~~~~~~~----s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~ 257 (357)
T PLN02661 185 RPNVKLFNAVAAEDLI--V-KGDRVGGVVTNWALVAQNHDTQ----SCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI 257 (357)
T ss_pred cCCCEEEeCeEeeeEE--e-cCCEEEEEEeecchhhhccCCC----CccceeEEECCEEEEcCCCCCcchhhhhhccccc
Confidence 5689999999999887 4 4678888775432110000000 001234799999999999654210 001111111
Q ss_pred Cc----------ccCCCCeeeecCCCCCCcccCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHHhc
Q 011535 359 GI----------VPNIRGRVLKNISGDSSQVENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 359 g~----------~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
|+ ..+..-..+|+. ...-+||+|++|-.++ +| .| +++.=+-.|+.+|+.|++.|..
T Consensus 258 g~~~~~pg~~~~~~~~~e~~~v~~---t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 258 GMIDSVPGMKALDMNAAEDAIVRL---TREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred CCccCCCCccccchhhHHHHHHhc---cCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 11 111111122222 2346899999997653 22 23 3433467899999999999873
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0004 Score=72.28 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=66.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
+++++|||+|+.|+.+|..|++.+ .+|++|++.+.+. |.. ..++...+.+.++..|++++.+..+..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELG--VKVTLVSSRDRVL--------PGE--DADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCcCC--------CCC--CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 579999999999999999999998 9999999876542 321 234556677777888999998875421
Q ss_pred -------EEEeccee-eccCEEEEccCCCCCCC
Q 011535 98 -------SVSLSELR-QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~~~~~-~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++. ..+|.|++|+|. .|+.
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~-~pn~ 276 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGS-VPNT 276 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecC-CcCC
Confidence 12222222 469999999998 3443
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.6e-05 Score=76.21 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=33.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 34689999999999999999999999 99999999864
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.1e-05 Score=69.29 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=35.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.+|+|||+|+||+.||..|+..+ .+|+||||+.-.||-+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccch
Confidence 46999999999999999999999 9999999997766643
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00042 Score=72.39 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++++|||||+.|+.+|..|++.+ .+|+|+++. .+ + |.. ..++...+.+.++..|++++.++.+..
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS-IL---L-----RGF--DQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhC--CcEEEEEec-cc---c-----ccc--CHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 4578999999999999999999999 999999863 21 1 221 235566677777888999998864321
Q ss_pred --------EEEecce----eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL----RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~----~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.+. ...+|.|++|+|. .|+.
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~-~pn~ 281 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR-DACT 281 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecC-CcCC
Confidence 1333222 3469999999997 3443
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.8e-05 Score=76.19 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+||||||||+++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcc
Confidence 48999999999999999999999 999999999764
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=77.75 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ....+....+.+.++..|++++.+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G--~~VtvVe~~~~ll--------~~-~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLG--VETHVIEFAPMLM--------AE-QLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeccccch--------hh-hcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 4578999999999999999999999 9999999877531 21 12234556677778888999999875522
Q ss_pred E----------EEeccee-eccCEEEEccCCCCCC
Q 011535 98 S----------VSLSELR-QLYHVVVLAYGAESDR 121 (483)
Q Consensus 98 ~----------~~~~~~~-~~yd~vvlAtG~~~~~ 121 (483)
. +.+.++. ..+|.||+|+|. .|+
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~-rPn 246 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGI-RPQ 246 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCc-ccC
Confidence 1 2233332 469999999998 344
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=65.25 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=82.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc------------------------
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------ 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~------------------------ 215 (483)
..|+|||+|++|+-+|..+.+ ...+|.++.+.+..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~---------------------~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~l 62 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAK---------------------AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFL 62 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhh---------------------cCCEEEEEecCccccceeEecCCCCccccccccHHHHH
Confidence 479999999999999999886 22456666654321
Q ss_pred -------------cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 216 -------------QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 216 -------------~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+.|++..+..+.+--++.++.....-.+..... .+.+.+.|.+... +.|
T Consensus 63 s~~p~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdk--------A~~Iv~~ll~~~~---------~~g 125 (408)
T COG2081 63 SRNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDK--------ASPIVDALLKELE---------ALG 125 (408)
T ss_pred HhCCCcchHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccc--------hHHHHHHHHHHHH---------HcC
Confidence 2347778888887777777776544322111111 1123344444433 789
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
|++++++.+..+. . ++. ...+. +.+++++.||.+|+|+|-+..|
T Consensus 126 V~i~~~~~v~~v~--~--~~~--~f~l~----------------t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 126 VTIRTRSRVSSVE--K--DDS--GFRLD----------------TSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred cEEEecceEEeEE--e--cCc--eEEEE----------------cCCCCEEEccEEEEecCCcCCC
Confidence 9999999999997 3 321 22221 2233389999999999965544
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=77.64 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. .........+.+.++..|++++.+..+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G--~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLG--MDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 4579999999999999999999999 9999999876531 11 01223445566777788999998875421
Q ss_pred --------EEEeccee-eccCEEEEccCCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCCC
Confidence 13334433 4699999999983
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.9e-05 Score=76.22 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 45679999999999999999999999 99999999864
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00042 Score=71.23 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=65.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
++|+|||||++|+.+|..|.... ++.+|+||++.+.+. |.. .+.+...+.+.+++.|+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~~--~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GSF--DQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------ccC--CHHHHHHHHHHHHHCCC
Confidence 58999999999999999987521 248999999876542 221 23566777888888999
Q ss_pred EEEeCeEEce----EEEeccee-eccCEEEEccCCC
Q 011535 88 SFFGNVTLGS----SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 88 ~~~~~~~v~~----~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
+++.++.+.. .+.++++. ..+|.+|+|+|..
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCC
Confidence 9998876632 34455443 4699999999973
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.7e-05 Score=79.52 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=36.0
Q ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
|+|||||.+||+||..|++.| .+|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceE
Confidence 689999999999999999999 99999999999999865
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.6e-05 Score=73.78 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=39.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCCceeccc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVRSGV 64 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~ggl~~~g~ 64 (483)
..+|+|||||||||+||++|.+.. .+++|+++|+...+||....|.
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 468999999999999999987643 5799999999999999877663
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.9e-05 Score=77.77 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=36.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|||||+|||+||..|.++| ++|+|+|+.+.+||..+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCcc
Confidence 5899999999999999999999 99999999999998753
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.8e-05 Score=75.88 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+++|+|||||++|+++|..|++.| ++|+|||+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCccc
Confidence 3579999999999999999999999 999999998754
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00033 Score=67.94 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=90.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.-+++++|||||..||..+.-..+.| .+||++|-.+..++.+. .++...+++.+...+++|.+++.+.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLG--seVT~VEf~~~i~~~mD----------~Eisk~~qr~L~kQgikF~l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLG--SEVTVVEFLDQIGGVMD----------GEISKAFQRVLQKQGIKFKLGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcC--CeEEEEEehhhhccccC----------HHHHHHHHHHHHhcCceeEeccEEE
Confidence 35789999999999999999999999 99999999988776543 2677888888888999999998873
Q ss_pred e---------EEEecce------eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 97 S---------SVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 97 ~---------~~~~~~~------~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
. .+.+.+. ...+|.+++|+|. +|.. .|.+++.+--..+...++--...+. . .--+
T Consensus 277 ~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-rP~t---~GLgle~iGi~~D~r~rv~v~~~f~-----t-~vP~ 346 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR-RPFT---EGLGLEKIGIELDKRGRVIVNTRFQ-----T-KVPH 346 (506)
T ss_pred EeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC-cccc---cCCChhhcccccccccceecccccc-----c-cCCc
Confidence 2 2222221 1358999999997 3433 3443322211113222221111111 1 2346
Q ss_pred EEEEcCCchHHHHHH
Q 011535 162 AVILGQGNVALDVAR 176 (483)
Q Consensus 162 vvVIG~G~~g~e~A~ 176 (483)
+-.||-=.-|--+|.
T Consensus 347 i~~IGDv~~gpMLAh 361 (506)
T KOG1335|consen 347 IYAIGDVTLGPMLAH 361 (506)
T ss_pred eEEecccCCcchhhh
Confidence 788887666655553
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00057 Score=72.35 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=64.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~ 98 (483)
+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.++..|++++.+..+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G--~~Vtli~~~~~il--------~~~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG--AESYIFARGNRLL--------RKF--DETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CcEEEEEeccccc--------ccC--CHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 689999999999999999999999 9999999876531 221 2345566777777889999988765311
Q ss_pred ---------EEecc-e-eeccCEEEEccCC
Q 011535 99 ---------VSLSE-L-RQLYHVVVLAYGA 117 (483)
Q Consensus 99 ---------~~~~~-~-~~~yd~vvlAtG~ 117 (483)
+...+ . ...+|.|++|+|.
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 11111 1 2469999999997
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.4e-05 Score=75.47 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+..++|+||||||+|+++|..|+++| ++|+|||+.+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCCC
Confidence 44579999999999999999999998 999999998653
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.2e-05 Score=76.34 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||+|+++|..|++.+++++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 689999999999999999999966699999999864
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.1e-05 Score=75.94 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~~ 38 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVPE 38 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCCc
Confidence 479999999999999999999999 999999998753
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0001 Score=73.90 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=36.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.+|+|||||+||+++|..|++.+ .+|+|+|+.+.+||...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcee
Confidence 58999999999999999999988 99999999998888643
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=70.63 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc-------------------------
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------- 215 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~------------------------- 215 (483)
+|+|||||++|+-+|..+++ .+ .+|.|+.|....
T Consensus 2 dviIIGgGaAGl~aA~~aa~--------------------~g-~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~ 60 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE--------------------KG-ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFL 60 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH--------------------TT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEE
T ss_pred cEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEeCCcccccceeecCCCCccccccccchhhHh
Confidence 58999999999999999976 22 356666655322
Q ss_pred -------------cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 216 -------------QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 216 -------------~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
...|+..++.+++.--++.....+.... .|.. .....+.+.|.+... +.|
T Consensus 61 ~~~~~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~-fP~s-------~~a~~Vv~~L~~~l~---------~~g 123 (409)
T PF03486_consen 61 SGYGRNPKFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRV-FPKS-------DKASSVVDALLEELK---------RLG 123 (409)
T ss_dssp CS-TBTTTCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEE-EETT---------HHHHHHHHHHHHH---------HHT
T ss_pred hhcccchHHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEE-CCCC-------CcHHHHHHHHHHHHH---------HcC
Confidence 1225555666665555555544322211 1111 112334455554443 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+++++++.+..+. . +++.+-.|+. .+..++.||.||+|+|-.+.|
T Consensus 124 v~i~~~~~V~~i~--~-~~~~~f~v~~------------------~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 124 VEIHFNTRVKSIE--K-KEDGVFGVKT------------------KNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp -EEE-S--EEEEE--E-ETTEEEEEEE------------------TTTEEEEESEEEE----SSSG
T ss_pred CEEEeCCEeeeee--e-cCCceeEeec------------------cCcccccCCEEEEecCCCCcc
Confidence 9999999999997 3 2443333433 122489999999999987644
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00066 Score=70.76 Aligned_cols=91 Identities=19% Similarity=0.357 Sum_probs=64.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.++.. ++++.+..+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~il--------~~--~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFDQVI--------PA--ADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC--------Cc--CCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 3589999999999999999999999 9999999887642 32 1234555666666665 88888765521
Q ss_pred --------EEEecc--e---eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSE--L---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~--~---~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.+ . ...+|.||+|+|. .|+.
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~pn~ 276 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-VPNG 276 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc-cccC
Confidence 122221 1 2469999999998 3443
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00058 Score=70.80 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++++|||||+.|+.+|..|.+.+ .+|++|++.+.+. +. ...++...+.+..+ .+++++.+..+..
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~~~~-~gI~i~~~~~V~~ 234 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALG--TRVTIVNRSTKLL--------RH--LDEDISDRFTEIAK-KKWDIRLGRNVTA 234 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCccc--------cc--cCHHHHHHHHHHHh-cCCEEEeCCEEEE
Confidence 3689999999999999999999998 9999999887642 21 11244445555444 4788888765422
Q ss_pred --------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|+.
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 267 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGR-VPNG 267 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeecc-CcCC
Confidence 1222222 2469999999998 3443
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.8e-05 Score=75.25 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..+|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 368999999999999999999999 9999999875
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.3e-05 Score=75.25 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 478999999999999999999999 99999999864
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00079 Score=70.26 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
.+++|+|||||+.|+.+|..+... + .+|+|+++.+.+. |.. ..++...+.+.++..|++++.++.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G--~~Vtli~~~~~il--------~~~--d~~~~~~l~~~L~~~GI~i~~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRG--GKVTLCYRNNMIL--------RGF--DSTLRKELTKQLRANGINIMTNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCC--CeEEEEecCCccc--------ccc--CHHHHHHHHHHHHHcCCEEEcCCE
Confidence 458999999999999999876654 6 8999999887642 221 235666777778888999999875
Q ss_pred Ece---------EEEecce-eeccCEEEEccCCC
Q 011535 95 LGS---------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~---------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
+.. .+.+.+. ...+|.|++|+|..
T Consensus 254 v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred EEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 522 1222222 24699999999973
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.9e-05 Score=75.04 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=31.9
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCcc
Confidence 5899999999999999999999 999999999764
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00082 Score=71.15 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=65.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.++..|++++.+..+.
T Consensus 250 ~~~k~V~VIGgG~iGvE~A~~L~~~g--~~Vtlv~~~~~il--------~~--~d~~~~~~l~~~L~~~GV~i~~~~~v~ 317 (558)
T PLN02546 250 SKPEKIAIVGGGYIALEFAGIFNGLK--SDVHVFIRQKKVL--------RG--FDEEVRDFVAEQMSLRGIEFHTEESPQ 317 (558)
T ss_pred ccCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeccccc--------cc--cCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 34689999999999999999999998 9999999876532 22 123555666777778899999886542
Q ss_pred eE---------EEecceee-ccCEEEEccCCC
Q 011535 97 SS---------VSLSELRQ-LYHVVVLAYGAE 118 (483)
Q Consensus 97 ~~---------~~~~~~~~-~yd~vvlAtG~~ 118 (483)
.. +...+... .+|.|++|+|..
T Consensus 318 ~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 318 AIIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred EEEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 11 12222222 389999999983
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=73.39 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSG--LEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCCc
Confidence 368999999999999999999999 99999999873
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=76.65 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
....+|+||||||+|+.+|..|++.| ++|+|||+.+.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~G--i~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcC--CCEEEEeCCCcc
Confidence 34579999999999999999999999 999999998754
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0025 Score=57.56 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=108.1
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-------cCC----HHHHHHH
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-------ACT----AKELREI 227 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-------~f~----~~el~~~ 227 (483)
...|+|||+|++|+-+|..|++ .+. +|.++.|+-.+.. -|. .++-+++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--------------------~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~i 88 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--------------------AGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADEI 88 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--------------------CCc-eEEEEEeecccCCcccccccccceeeecchHHHH
Confidence 4579999999999999999997 444 6999999832211 111 1344444
Q ss_pred hcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC-ceEE
Q 011535 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG-HVSG 306 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g-~v~~ 306 (483)
++-=++...-....+.- ....+ +...|...+. +.|.++.....+..+. - .++ +|.+
T Consensus 89 L~e~gI~ye~~e~g~~v--~ds~e---------~~skl~~~a~---------~aGaki~n~~~veDvi--~-r~~~rVaG 145 (262)
T COG1635 89 LDEFGIRYEEEEDGYYV--ADSAE---------FASKLAARAL---------DAGAKIFNGVSVEDVI--V-RDDPRVAG 145 (262)
T ss_pred HHHhCCcceecCCceEE--ecHHH---------HHHHHHHHHH---------hcCceeeecceEEEEE--E-ecCCceEE
Confidence 43222222221111100 00000 1112222221 5678887778888776 3 344 7888
Q ss_pred EEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC---------CCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN---------GLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 307 v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~---------~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
+.+.-.-.... +. -=+.-.+++..||-+||-...-.. +..+........+..-...++. ..
T Consensus 146 vVvNWt~V~~~--~l-----hvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~---T~ 215 (262)
T COG1635 146 VVVNWTPVQMA--GL-----HVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVEN---TG 215 (262)
T ss_pred EEEecchhhhc--cc-----ccCcceeeEEEEEeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhc---cc
Confidence 87764322111 00 002247899999999998763210 0001011111111111233333 33
Q ss_pred cccCceeeeccCCC----CC-cc-hhHhhHHHHHHHHHHHHHHHh
Q 011535 378 QVENGLYVCGWLKR----GP-TG-IIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 378 t~~p~vya~Gd~~~----g~-~~-~~~~a~~~g~~~a~~I~~~l~ 416 (483)
.-.||+|++|-..+ .| .| +++.=+-.|+.+|+.|.+.|.
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 56899999997653 12 23 333335678889988888775
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=74.07 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+++|+||||||+|+++|..|+++| ++|+|||+.+.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Confidence 368999999999999999999999 999999998764
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=74.87 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 35589999999999999999999999 9999999875
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=74.37 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 468999999999999999999999 99999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=76.37 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=37.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
.+|+|||||.+||++|..|++.| .+|+|+|+++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeE
Confidence 37999999999999999999999 999999999999987653
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=75.02 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+||||||||+++|..|+++| ++|+|||+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCcc
Confidence 48999999999999999999999 999999998753
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00092 Score=69.54 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++.. ++++.+..+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLG--VKVTVFERGDRIL--------PL--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 4689999999999999999999998 9999999987643 21 1235566677777777 89888865521
Q ss_pred -------EEEe--cc---eeeccCEEEEccCCCCCCC
Q 011535 98 -------SVSL--SE---LRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 -------~~~~--~~---~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+ .+ ....+|.|++|+|. .|+.
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~p~~ 270 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGR-RPNT 270 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCC-ccCC
Confidence 1221 11 12469999999998 3443
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00088 Score=70.30 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|++.+ .+|+|+++. .+ + +. ...++...+.+.++..+++++.++.+..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 247 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELG--FDVTVAVRS-IP---L-----RG--FDRQCSEKVVEYMKEQGTLFLEGVVPIN 247 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcC-cc---c-----cc--CCHHHHHHHHHHHHHcCCEEEcCCeEEE
Confidence 3569999999999999999999999 999999863 22 1 22 1234556677777888999998865421
Q ss_pred --------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++ ...+|.|++|+|. .|+.
T Consensus 248 v~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 280 (499)
T PTZ00052 248 IEKMDDKIKVLFSDGTTELFDTVLYATGR-KPDI 280 (499)
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEEeeCC-CCCc
Confidence 1222222 2469999999998 3443
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00018 Score=75.79 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC---CCCeEEEEecCCCCCCceec
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~---~~~~v~lie~~~~~ggl~~~ 62 (483)
..++|+|||||+|||+||..|.+.+ .+.+|+|+|+...+||.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3578999999999999999999875 24899999999999997653
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00012 Score=74.39 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 478999999999999999999999 999999998
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=74.13 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 48999999999999999999999 99999998865
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=3.2e-05 Score=68.73 Aligned_cols=58 Identities=31% Similarity=0.367 Sum_probs=46.1
Q ss_pred hhhhhhhhccCCC-CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 5 RAWLSRSFTALSS-NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
|.+..|.+..+.+ ...+|+|||+|.|||++|+.+.++.|+++|.|||.+-.|||..+.
T Consensus 61 RaMTrRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 61 RAMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred HHHHHHHHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 4445555544433 357999999999999999999999999999999999888776543
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=76.95 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+||||||+|+++|..|+++| ++|+|||+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G--~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRG--VDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 45689999999999999999999999 99999998853
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00017 Score=73.78 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=40.6
Q ss_pred hhhhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhc-CCCC-eEEEEecCCC
Q 011535 5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (483)
Q Consensus 5 ~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~-~~~~-~v~lie~~~~ 55 (483)
+.|..++...+.....+|+|||||.+|+++|++|+++ + . +|+|||+...
T Consensus 16 ~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~~ 66 (407)
T TIGR01373 16 RGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGWL 66 (407)
T ss_pred CCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEcccc
Confidence 4555666666667789999999999999999999996 6 5 8999999854
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00015 Score=73.92 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=32.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 78999999999999999999999 99999999865
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=73.96 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~ 53 (483)
...+|+||||||||+++|..|+++ | ++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 457999999999999999999998 8 999999994
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00018 Score=72.49 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=35.1
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
...||+|++|.+. |-.|-. .|..+|..++.|++..+.+.+.
T Consensus 328 k~~~~l~~AGqi~-g~~Gy~-ea~a~G~~Ag~n~~~~~~g~~~ 368 (436)
T PRK05335 328 KKRPNLFFAGQIT-GVEGYV-ESAASGLLAGINAARLALGKEP 368 (436)
T ss_pred cCCCCEEeeeeec-CchHHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 3679999999994 667777 7999999999999999987644
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=71.02 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHH-hcCCeEEEeCeEEce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLGS 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~v~~ 97 (483)
+++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.+ +..+++++.++.+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G--~eVTLIe~~~~ll--------~~--~d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALG--SEVVSFEYSPQLL--------PL--LDADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 579999999999999999999998 9999999987642 22 1224555555543 567899998876521
Q ss_pred --------EEEe--c-------ce---------eeccCEEEEccCCCCCCC
Q 011535 98 --------SVSL--S-------EL---------RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~--~-------~~---------~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+ . .. ...+|.|++|+|. .|+.
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr-~Pnt 429 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR-KPNT 429 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc-ccCC
Confidence 1221 1 01 3468999999998 4443
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=69.00 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=33.6
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.+||+|++|++ +|..|.. .|..+|..++.|++..+.+.+
T Consensus 356 ~~~gLf~AGqi-~Gt~Gy~-eAaa~Gl~Ag~naa~~~~~~~ 394 (617)
T TIGR00136 356 LIQGLFFAGQI-NGTTGYE-EAAAQGLMAGINAALKLQNKE 394 (617)
T ss_pred CCCCeEEcccc-CCcchHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 47999999997 5678866 899999999999999988753
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00021 Score=77.40 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...++|+|||||+|||+||..|++.| ++|+|+|+.+.+||.+.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRVY 200 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCcee
Confidence 35689999999999999999999999 99999999998888654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00018 Score=73.53 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 4579999999999999999999998 99999999864
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00018 Score=73.22 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 468999999999999999999999 99999999874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00063 Score=71.16 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=56.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|++|+++|..|.++| .+|+++|+.+.. ....+.+.++..|++++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDE-----------------RHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchh-----------------hhHHHHHHHHHcCCEEEECCCcc-
Confidence 4679999999999999999999999 999999976421 11223344556688888775442
Q ss_pred EEEecceeeccCEEEEccCCC
Q 011535 98 SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~~ 118 (483)
....+|.||+++|..
T Consensus 75 ------~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWR 89 (480)
T ss_pred ------ccCCCCEEEECCCcC
Confidence 123589999999983
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=75.49 Aligned_cols=41 Identities=37% Similarity=0.487 Sum_probs=38.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||++||++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 469999999999999999999999 99999999999998764
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00021 Score=74.50 Aligned_cols=40 Identities=38% Similarity=0.439 Sum_probs=36.9
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
+|+|||||.+||++|..|.+.| ++|+|+|+.+.+||....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceeee
Confidence 5899999999999999999999 999999999999987553
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=72.46 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+|+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCCC
Confidence 58999999999999999999999 9999999863
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00025 Score=75.45 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 5579999999999999999999999 99999999974
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00023 Score=72.78 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 469999999999999999999999 999999985
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00028 Score=73.70 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=39.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceec
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~ 62 (483)
...++|+|||||++||+||..|.+.+ . +|+|+|+.+.+||.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMRK 68 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCccee
Confidence 35679999999999999999999998 7 69999999999987653
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0003 Score=70.00 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+|||||++|+++|.+|++.+ .+|+|+|++...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeecccc
Confidence 6999999999999999999999 999999999443
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00026 Score=72.62 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+|||||+|||++|..|.+.+ .++|+|||+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g-~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS-HLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CCCEEEEecCCcC
Confidence 47999999999999999999986 1499999998764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00023 Score=73.51 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.7
Q ss_pred CeEEEECccHHHHHHHHHHHh----cCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~----~~~~~~v~lie~~ 53 (483)
++|+||||||+|+++|..|++ +| ++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G--~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKD--LKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCC--CeEEEEeCC
Confidence 479999999999999999998 67 999999994
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00021 Score=68.42 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=37.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||+|.+||+||..|.++ ++|+|||.+...||..+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 467999999999999999999998 89999999999888643
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00033 Score=70.03 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
....+|||||||.|||+||.+|...+ -.+++|+|..++.||-+.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIH 62 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEe
Confidence 34579999999999999999999765 268999999999998654
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00031 Score=76.55 Aligned_cols=42 Identities=33% Similarity=0.504 Sum_probs=38.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|++||..|.+.+ ++|+|+|+.+.+||-+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCccc
Confidence 4688999999999999999999999 99999999999988643
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=63.33 Aligned_cols=87 Identities=22% Similarity=0.233 Sum_probs=63.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .+ ..+...+.+.++..+++++.+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~--~~Vtlv~~~~~~~--------~~----~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------AE----KILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEECCccC--------CC----HHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 4689999999999999999999998 9999999876420 11 23445566667778899988765421
Q ss_pred ---------EEEecce-------eeccCEEEEccCCC
Q 011535 98 ---------SVSLSEL-------RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ---------~~~~~~~-------~~~yd~vvlAtG~~ 118 (483)
.+.+.+. ...+|.||+|+|..
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 1222211 24689999999983
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00035 Score=74.21 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=34.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G--~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG--VRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence 45689999999999999999999999 999999999653
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00028 Score=75.48 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..+.+|+|||||++||++|..|+++| ++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--i~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--FDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEeccc
Confidence 35689999999999999999999999 9999999975
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00034 Score=71.57 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+|||||.+|+++|++|++.+ .+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 59999999999999999999998 999999998753
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=64.92 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc----CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~----~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
..++|+|||+|++|+.+|..|.+. +...+|+|+. .+.+ + +. ...++...+.+.++..+++++.++
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~---l-----~~--~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASL---L-----PG--FPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcc---c-----cc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 357999999999999999999863 2225899993 3221 1 11 123455667777888899999987
Q ss_pred EEce----EEEecce-eeccCEEEEccCCC
Q 011535 94 TLGS----SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 94 ~v~~----~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.. .+.+.++ ...+|.||+|+|..
T Consensus 213 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 213 PVTRGPDGALILADGRTLPADAILWATGAR 242 (364)
T ss_pred eeEEEcCCeEEeCCCCEEecCEEEEccCCC
Confidence 6532 2444433 35699999999984
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=63.41 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.2
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+|+|||+|++|+.+|..|.+ .+. +|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--------------------~g~-~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--------------------ANL-KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeccC
Confidence 59999999999999999986 444 699999765
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00032 Score=70.88 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=30.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+||||||||+++|.+|.+..++.+|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 699999999999999999544445999999987654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=66.37 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+-+|..|.+ .|. +|+++.+++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--------------------~G~-~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--------------------EGH-TVVVFEREKQV 45 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--------------------cCC-eEEEEecCCCC
Confidence 45899999999999999999986 453 79999987543
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00043 Score=73.75 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=39.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..+++|+|||||++||++|.+|.+.+ .+|+|+|+.+.+||...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcce
Confidence 34689999999999999999999999 99999999999888754
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00028 Score=72.42 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=31.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|+|||+|.||+.||+.+++.+ .+|+|+|+.+..+|
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccccc
Confidence 6999999999999999999999 99999999987544
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0004 Score=72.97 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||||++|+++|..|++.| .+|+|+|+.+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G--~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDG--RRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcC--CeEEEEECcCC
Confidence 34679999999999999999999999 99999999753
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0023 Score=64.22 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
..+|+++|+|+.|+.+|..|.... .+|++|++.+.+- |.. ....+...+..++++.+++|+.++.+..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~--~~VT~V~~e~~~~--------~~l-f~~~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKA--KSVTVVFPEPWLL--------PRL-FGPSIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcC--ceEEEEccCccch--------hhh-hhHHHHHHHHHHHHhcCeEEEEecceeec
Confidence 678999999999999999999998 9999999887642 221 1234666778888889999999987632
Q ss_pred ---------EEEeccee-eccCEEEEccCCCCCCC
Q 011535 98 ---------SVSLSELR-QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ---------~~~~~~~~-~~yd~vvlAtG~~~~~~ 122 (483)
.+.+.++. ..+|.||+.+|+ .|..
T Consensus 282 ~~~~~Gev~~V~l~dg~~l~adlvv~GiG~-~p~t 315 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGKTLEADLVVVGIGI-KPNT 315 (478)
T ss_pred ccCCCCcEEEEEeccCCEeccCeEEEeecc-cccc
Confidence 23344443 369999999998 4444
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0005 Score=68.68 Aligned_cols=43 Identities=30% Similarity=0.287 Sum_probs=39.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
....+|+|||+|.+||++|..|.+.| ++|+|+|..+.+||-+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCceeE
Confidence 56789999999999999999999999 99999999999888543
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00044 Score=72.71 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|||||+|.||++||..+++.| .+|+|+|+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Confidence 568999999999999999999999 99999999987655
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00037 Score=70.57 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|+||||||||+++|..|++.| +++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCC-CceEEEEeCCCc
Confidence 5899999999999999999985 389999999864
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00051 Score=69.36 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||.+|+++|+.|++++ .+|+|||+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence 478999999999999999999998 999999998644
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00044 Score=69.25 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence 6899999999999999999875 89999998863
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00051 Score=72.76 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||++|+++|..|++.| ++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G--~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQG--RKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcC--CEEEEEcccc
Confidence 4679999999999999999999999 9999999976
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00057 Score=69.24 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=34.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
.+++|+|||||.+|+++|++|++.| .+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCccCC
Confidence 5689999999999999999999999 8999999987543
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00047 Score=74.36 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~ 55 (483)
...+|+||||||+||.+|..|++. | ++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~G--i~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPD--ITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCC--CcEEEEEcCCC
Confidence 367999999999999999999995 8 99999999864
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00053 Score=69.30 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+|+|||||.+|+++|++|++++ .+|+|||+.+.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCC
Confidence 47999999999999999999998 999999997543
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00054 Score=69.71 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+|+|||||.+|+++|++|+++.|+.+|+|+|+.+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 6899999999999999999999334999999998654
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00057 Score=69.65 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=34.4
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCC--CCeEEEEecCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLP 54 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~--~~~v~lie~~~ 54 (483)
++....++|+||||||+|+++|..|++.+- +.+|+|+|+.+
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 355567899999999999999999999861 26899999974
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00063 Score=70.90 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=43.2
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-Cc-------chhHhhHHHHHHHHHHHHHHHhc
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PT-------GIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~-------~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
...|+.+|.+++|+..+. +.+||+||+|.|+.+ .. ..+..++-.|+.++++++++...
T Consensus 398 t~GGl~~d~~~~vl~~~g----~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 398 TYLGLKVDEDARVRFADG----RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred ecccEEECCCceEECCCC----CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 345788888999886654 579999999998654 21 22336788999999999887654
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0006 Score=68.70 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=32.7
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|+|||||+||+++|..|++..++++|+|+|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 68999999999999999998733499999999876554
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0007 Score=70.69 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||||..|+++|+.|++..|+.+|+|+||.+.+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 457999999999999999999998667999999998653
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00067 Score=71.18 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|.||++||..+++.+ .+|+|+||.+..+|
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCC
Confidence 579999999999999999999999 99999999977554
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00063 Score=68.96 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=35.7
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
...|++|.+|-+ +|-.|-. .|..||..++.|++..+.+.+.
T Consensus 327 k~~~~lf~AGQi-~G~~GY~-Eaaa~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 327 KDRQTLFFAGQL-TGVEGYV-ASTAGGWLAGINAARLALGEPL 367 (433)
T ss_pred CCCCCEEECccc-ccchHHH-HHHHHHHHHHHHHHHHHcCCCC
Confidence 457999999998 6788888 7999999999999999988643
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00076 Score=67.84 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||.+|+++|++|++.+ .+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G--~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 37999999999999999999998 99999999864
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00087 Score=70.47 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||||..|+++|+.|+++| ++|+|+|+.+..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--~~V~LlEk~d~~~G 43 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRG--LKVLLCEKDDLAQG 43 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCC
Confidence 4579999999999999999999999 99999999975443
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00087 Score=69.71 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||.+|+++|++|++.+|+.+|+|+|+...
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4689999999999999999999844599999999754
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00096 Score=70.18 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..++|+|||||..|+++|..|+++| ++|+|||+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--l~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRG--LSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCC
Confidence 4589999999999999999999999 99999999865443
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00079 Score=69.00 Aligned_cols=34 Identities=41% Similarity=0.559 Sum_probs=31.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|||||.+|+++|.+|++.+ .+|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 48999999999999999999998 99999999854
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00088 Score=71.69 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+.+|+|||+|.|||+||..+++.+ .+|+|+|+.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence 459999999999999999999999 999999988654
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=57.69 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=63.1
Q ss_pred cceEEEeecCCcceeecccCCCCceE--EEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC--CCCC---
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVS--GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP--VNGL--- 352 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~--~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~--~~~l--- 352 (483)
..++++++...+.++. . ....+. .+.+. ...+++..++++|.||+|+|..|.. +++.
T Consensus 70 ~~~v~~~~~~~v~~i~--~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~ 133 (201)
T PF07992_consen 70 NRGVEIRLNAKVVSID--P-ESKRVVCPAVTIQ-------------VVETGDGREIKYDYLVIATGSRPRTPNIPGEEVA 133 (201)
T ss_dssp HHTHEEEHHHTEEEEE--E-STTEEEETCEEEE-------------EEETTTEEEEEEEEEEEESTEEEEEESSTTTTTE
T ss_pred cceEEEeecccccccc--c-cccccccCcccce-------------eeccCCceEecCCeeeecCccccceeecCCCccc
Confidence 4578887778888886 3 233220 00110 1124566799999999999988752 3321
Q ss_pred ---------------------------Ccc-CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC
Q 011535 353 ---------------------------PFD-NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG 392 (483)
Q Consensus 353 ---------------------------~~~-~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g 392 (483)
.+. +..++.++++|++.+|+. ++++.|+|||+|||+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~--~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 134 YFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDEN--LQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp CBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTT--SBBSSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence 011 344677888999999997 78899999999999764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0042 Score=59.56 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+++|||+|.-|+++|+.|++++ .++.++|+-+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~~ 41 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFPL 41 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcC--CeEEEEeccCC
Confidence 4578999999999999999999999 99999998854
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=61.26 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=36.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.+++|||+|.+|..+|..|++.| .+|.|+|+.++.||-.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCcc
Confidence 68999999999999999999989 9999999999998853
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00093 Score=70.40 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+| ||++||.++++.+ .+|+|||+.+..||
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 5699999999 9999999999999 99999999987554
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.001 Score=71.11 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||.||++||..+++.+++.+|+|+||.+..+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 358999999999999999999886558999999986533
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00098 Score=69.36 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|||+|.|||+||..+++.+ .+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G--~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKG--FDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 79999999999999999999998 99999999753
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0015 Score=64.53 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
.-++|||||||.|+.+|..|+..- .+++|+++|..|.. .+.+ .+.+..+.++++.+.+
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------L~mF--dkrl~~yae~~f~~~~ 287 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------LNMF--DKRLVEYAENQFVRDG 287 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------HHHH--HHHHHHHHHHHhhhcc
Confidence 357999999999999999987521 25899999987653 1221 2456677788888899
Q ss_pred eEEEeCeEEc----eEEEecce-----eeccCEEEEccCCCCCCCC
Q 011535 87 CSFFGNVTLG----SSVSLSEL-----RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 87 v~~~~~~~v~----~~~~~~~~-----~~~yd~vvlAtG~~~~~~~ 123 (483)
+++..++.+. +++..+.. ...|-.+|=|||. .+++.
T Consensus 288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~-~~rp~ 332 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGN-GPRPV 332 (491)
T ss_pred ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCC-CCchh
Confidence 9999997763 23443332 2359999999998 45553
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0065 Score=64.13 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=58.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhc-CCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~ 96 (483)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. . . ..+.+.++. .|++++.++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g--~~Vtli~~~~~l~--------~-----~---~~l~~~l~~~~gV~i~~~~~v~ 412 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIV--RHVTVLEFADELK--------A-----D---KVLQDKLKSLPNVDILTSAQTT 412 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC--cEEEEEEeCCcCC--------h-----h---HHHHHHHhcCCCCEEEECCeeE
Confidence 3579999999999999999999988 8999999765431 1 1 123344443 589998886542
Q ss_pred e---------EEEecc------eeeccCEEEEccCCCCCC
Q 011535 97 S---------SVSLSE------LRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 97 ~---------~~~~~~------~~~~yd~vvlAtG~~~~~ 121 (483)
. .+.+.+ ....+|.|++|+|. .|.
T Consensus 413 ~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-~Pn 451 (515)
T TIGR03140 413 EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-VPN 451 (515)
T ss_pred EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC-cCC
Confidence 1 133221 12358999999998 343
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0037 Score=63.81 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++|+|.||-+ +|.+|-- .|..||-.++-|.+..+.+.
T Consensus 358 ~I~GLf~AGQI-NGTtGYE-EAAaQGliAGiNAal~~~~~ 395 (621)
T COG0445 358 KIKGLFFAGQI-NGTTGYE-EAAAQGLIAGINAALKVQGK 395 (621)
T ss_pred eecceEEcccc-cCCchhH-HHHhhhHHHHHHHHHHhcCC
Confidence 57899999998 7788876 79999999999988877654
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0012 Score=71.03 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.| .+|+|+||.+..+
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~lveK~~~~~ 65 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELG--YKTACISKLFPTR 65 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEeccCCCC
Confidence 569999999999999999999998 9999999986543
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0013 Score=71.92 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=38.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|+.+|..|.+.+ .+|+|+|+.+.+||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCcc
Confidence 4689999999999999999999998 99999999999988654
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0014 Score=66.22 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=36.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|+|||||..|+++|..|.+..|+.+|+|+||.+.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 4579999999999999999999999999999999997654
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0013 Score=70.37 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||+|.|||+||..+++.+ .+|+|||+.+.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 34579999999999999999999998 99999999754
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0012 Score=68.75 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||.+|+++|..|++..|+.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 379999999999999999999856699999999754
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0014 Score=68.35 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||||..|+++|+.|++.+|..+|+|+|+.+.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 345899999999999999999999866679999999853
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0014 Score=71.35 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+|+|||||.+|+++|++|+++| .+|+|+|+...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G--~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRG--WQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 59999999999999999999999 99999999853
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0015 Score=69.34 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+|||||..|+++|+.|+++| ++|+|||+...
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG--~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRG--LRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 579999999999999999999999 99999999754
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0013 Score=69.90 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--CCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--TPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--~~gg 58 (483)
..+|+|||+|.|||+||..+++.+ .+|+|+|+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCC
Confidence 469999999999999999999999 9999999998 5555
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0011 Score=65.15 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=55.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcC----CeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE----RCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~----~v~~~~~~~v 95 (483)
++|.|||.|+.||..|..|++.| ++|+.+|..+.--..+..|..|-+.. .+++++++. +++|-.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~g~~PI~Ep------gLe~ll~~~~~~gRl~fTtd--- 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNKGISPIYEP------GLEELLKENLASGRLRFTTD--- 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhCCCCCCcCc------cHHHHHHhccccCcEEEEcC---
Confidence 58999999999999999999999 99999998875444555555554321 133333332 1222111
Q ss_pred ceEEEecceeeccCEEEEccCC
Q 011535 96 GSSVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~ 117 (483)
........|.++||+|.
T Consensus 70 -----~~~a~~~adv~fIavgT 86 (414)
T COG1004 70 -----YEEAVKDADVVFIAVGT 86 (414)
T ss_pred -----HHHHHhcCCEEEEEcCC
Confidence 11223468999999997
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00058 Score=62.42 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=24.1
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+|||+|++|+-+|..|.+ .+.+.|+|+.|+...
T Consensus 1 ~IIGaG~aGl~~a~~l~~--------------------~g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--------------------RGIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--------------------TT---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHh--------------------CCCCcEEEEeCCCCC
Confidence 699999999999999986 677669999998543
|
... |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0013 Score=69.65 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=34.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
...+|+|||+|.|||.||..+++.+ .+|+|+||.+..+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G--~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAG--RRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CeEEEEEccCCCC
Confidence 4579999999999999999999998 9999999987654
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0015 Score=69.67 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||+|.|||+||..+++.+ .+|+|+||.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G--~~V~lveK~~~~ 40 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAG--FKVAVISKVFPT 40 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCC--CcEEEEEccCCC
Confidence 3469999999999999999999998 999999998643
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0014 Score=74.28 Aligned_cols=42 Identities=26% Similarity=0.393 Sum_probs=38.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|+++|..|.+.+ .+|+|||+.+.+||.+.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCcee
Confidence 4589999999999999999999998 99999999999988754
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0013 Score=70.26 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+|+|||+|.||++||..+++.+ .+|+|+||.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G--~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 6999999999999999999999 999999998653
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0015 Score=69.74 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC------Cc-c-hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG------PT-G-IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g------~~-~-~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
...|+.+|.+++|+..+. ..+||+||+|.++.+ +. | .++.++..|+.+++++++.+...
T Consensus 507 T~GGl~in~~~qVLd~~g----~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~ 573 (584)
T PRK12835 507 TSGGLRTDEHARVLREDD----SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAA 573 (584)
T ss_pred cCcCccCCCCceEECCCC----CCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhc
Confidence 456888999999987654 589999999988632 11 2 35678999999999998886543
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0015 Score=69.64 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||||.|||+||..+++.+++.+|+|+||.+..++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3589999999999999999998865589999999876443
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0018 Score=68.93 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=35.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||+|.+|+++|..+++.+ .+|+|||+.+..+|
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg 45 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTCGG 45 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 34679999999999999999999999 99999999876654
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0016 Score=70.29 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=33.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||+|.|||+||..+++.| .+|+|+|+.+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G--~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCC--CCEEEEeccCCC
Confidence 468999999999999999999999 999999998654
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0017 Score=69.21 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=38.6
Q ss_pred CeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 366 G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
|.|.+|.. ++|++||+||+|+|+.........++-.|..++.+++.++...
T Consensus 357 Ggi~~d~~--~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 357 SGVWVNEK--AETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred CcEEECCC--CccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55777776 7899999999999964333333368889999999988887543
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0016 Score=69.53 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.+++.+|+|+||.+..+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 358999999999999999999886558999999986543
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0019 Score=63.76 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||.+|+++|..|.++| ++|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC--CeEEEEeeccc
Confidence 468999999999999999999999 99999998744
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0052 Score=63.64 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||||..|+.+|..|.+.+ .+|+++++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCc
Confidence 4589999999999999999999999 89999998753
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0018 Score=66.98 Aligned_cols=37 Identities=41% Similarity=0.518 Sum_probs=32.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+|+|||+|.||++||..+++.+ ..+|+|+|+.+..+|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G-~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAG-AANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CccEEEEecCCCCCC
Confidence 6999999999999999999986 269999999977543
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0019 Score=68.79 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC------C--cchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG------P--TGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g------~--~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
...|+.+|.+++|+..+. ..+||+||+|.++.+ + ...++.++..|+.+++++++.+...|
T Consensus 487 T~GGl~in~~~qVld~~g----~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~~ 554 (557)
T PRK12844 487 TSGGLLTDEHARVLREDG----SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSADP 554 (557)
T ss_pred ECCCccCCCCceEECCCC----CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCCC
Confidence 346888999999886654 588999999988632 1 22455789999999999988866553
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=60.53 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|.+|+-+|..|.+ .+...+.|+.++..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~--------------------~g~~~~~i~Ek~~~ 43 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQ--------------------AGVPDFVIFEKRDD 43 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--------------------cCCCcEEEEEccCC
Confidence 34689999999999999999986 67666888888853
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0037 Score=62.07 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=31.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....++|+|||||-++...+..|.+.++..+|+++-|.+.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 3467899999999999999999999987789999998864
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.002 Score=66.62 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCC-CeEEEEecCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTP 56 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~-~~v~lie~~~~~ 56 (483)
+|+|||||+||..+|..|++.++. ++|+|||+...+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 699999999999999999999865 899999988654
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=57.92 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.++|+|||+|.+|+-+|..|.+ .+. +|+|+.++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR--------------------AGI-AVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCC
Confidence 4689999999999999999986 454 588888775
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0024 Score=66.45 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
+...+|+|||||.+|.++|..|++..|+.+|+|+|+.+.++
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 34579999999999999999999997779999999955543
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0024 Score=68.83 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...++|+|||||..|.++|+.|+++| ++|+|||+.+..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rG--l~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRG--LRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccCCC
Confidence 34589999999999999999999999 99999999865444
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0021 Score=69.24 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.+ .+|+|+||.+..+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G--~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcC--CcEEEEEcCCCCC
Confidence 368999999999999999999998 9999999986543
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0021 Score=68.97 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||||.|||+||..+++.+ .+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G--~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAG--LKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCC
Confidence 3579999999999999999999998 99999999864
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0025 Score=68.25 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||+|.|||+||..+++.+ .+|+|+||.+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence 3569999999999999999999998 999999998654
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0024 Score=68.34 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=34.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~g 57 (483)
...+|+|||||.|||+||..+++.++ +.+|+|+||.+..+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~ 44 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMR 44 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCC
Confidence 34689999999999999999999863 37999999987544
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0024 Score=66.86 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||+|.|||+||..+++.+ . |+|+||.+..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G--~-V~lleK~~~~~ 37 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG--R-VIVLSKAPVTE 37 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC--C-EEEEEccCCCC
Confidence 358999999999999999999988 7 99999996543
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0035 Score=65.75 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=34.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
++|+|||+||+|+.+|..|++.+ ++|.+||+....++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g--~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG--LKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC--CeEEEEeccCccCCC
Confidence 48999999999999999999999 999999999887653
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.034 Score=56.88 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.|++.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD--------------------SGL-RIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEecCCc
Confidence 3579999999999999999986 454 6899988754
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0024 Score=65.58 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...+|+|||+|.+|+.+|..|++.| .+|.++|++++.||...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 3579999999999999999999999 99999999999998754
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=58.08 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEE
Q 011535 260 RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVL 339 (483)
Q Consensus 260 r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi 339 (483)
.+.+.|.+.+. +.++.+++++.+..+. . +++.+. +.+.. ..+|+.+++.+|+||
T Consensus 112 ~l~~~L~~~~~---------~~gv~i~~~~~v~~~~--~-d~~~~~-~~~~~-------------~~~g~~~~i~adlvV 165 (356)
T PF01494_consen 112 ELDRALREEAE---------ERGVDIRFGTRVVSIE--Q-DDDGVT-VVVRD-------------GEDGEEETIEADLVV 165 (356)
T ss_dssp HHHHHHHHHHH---------HHTEEEEESEEEEEEE--E-ETTEEE-EEEEE-------------TCTCEEEEEEESEEE
T ss_pred HHHHhhhhhhh---------hhhhhheeeeeccccc--c-cccccc-ccccc-------------ccCCceeEEEEeeee
Confidence 34455555544 5679999999988886 3 233332 22221 114555689999999
Q ss_pred EeeecCC
Q 011535 340 KSIGYKS 346 (483)
Q Consensus 340 ~a~G~~~ 346 (483)
-|-|...
T Consensus 166 gADG~~S 172 (356)
T PF01494_consen 166 GADGAHS 172 (356)
T ss_dssp E-SGTT-
T ss_pred cccCccc
Confidence 9999875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0094 Score=61.83 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|+|+|.+|+.+|..|++.| ++|+++|+.+.. .+.....+ +...+++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~----------------~~~~~~~~-l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEED----------------QLKEALEE-LGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchH----------------HHHHHHHH-HHhcCCEEEeCCcch-
Confidence 4689999999999999999999999 999999986420 11111222 344466665544332
Q ss_pred EEEecceeeccCEEEEccCCC
Q 011535 98 SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.....+|.||+++|..
T Consensus 64 -----~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVP 79 (450)
T ss_pred -----hHhhcCCEEEECCCCC
Confidence 1223699999999973
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.024 Score=57.48 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
-+|+|||+|++|+-+|..|++ .|. +|+|+.|++..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA--------------------RGH-SVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh--------------------cCC-cEEEEeCCCcc
Confidence 479999999999999999986 455 58888877643
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0025 Score=68.81 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||+|.|||+||..+++.+ .+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G--~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELG--YNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 469999999999999999999998 999999986543
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=60.37 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||..|+.+|..|.+.+ .+|+++.+..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecC
Confidence 5689999999999999999999999 8899998764
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0025 Score=68.48 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||.|||+||..+++.+++.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 4689999999999999999999822299999999864
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0024 Score=65.72 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|.|||+||..+. .+ .+|+|+||.+..+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G--~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KD--LKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cC--CCEEEEecCCCCCC
Confidence 469999999999999999984 56 99999999876543
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0028 Score=66.71 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|.||++||..+++ + .+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g--~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-E--YNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-C--CCEEEEeccCCCCC
Confidence 5699999999999999999976 7 99999999976544
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0031 Score=67.11 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|||||+| +|++||..+++.+ .+|+|+||.+..||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcC
Confidence 46899999999 8999999999999 99999999987665
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=59.58 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=76.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc------ccCCHHHHHHHhcCCC--
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ------AACTAKELREILGIKN-- 232 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~------~~f~~~el~~~~~~~~-- 232 (483)
.|+|||+|++|.-+|..|++ .| -+|.++.++.... ..++...+.++...+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~--------------------~G-~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~ 63 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAK--------------------AG-LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE 63 (396)
T ss_pred eEEEECCchHHHHHHHHHHH--------------------cC-CeEEEEecCCCCCCCccccceechhhHHHhCCCcchh
Confidence 69999999999999999986 56 5799999975432 2345556666655443
Q ss_pred eeEEeccccccCCCCcHHHhh-----c-cHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEE
Q 011535 233 LYVHIREDDLIKSPTDEEEMK-----N-SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306 (483)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~ 306 (483)
+...+....+... ....... . --.+.++.+.|.+.+. +.|.+++..+.+..+. .++++.+..
T Consensus 64 i~~~v~~~~~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~---------~aGae~~~~~~~~~~~--~~~~~~~~~ 131 (396)
T COG0644 64 IERKVTGARIYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAE---------EAGAELYPGTRVTGVI--REDDGVVVG 131 (396)
T ss_pred hheeeeeeEEEec-CCceEEecCCCceEEEEhHHhhHHHHHHHH---------HcCCEEEeceEEEEEE--EeCCcEEEE
Confidence 1222221111111 0000000 0 0013344555665554 6799999999998887 312332222
Q ss_pred EEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 307 v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+. .+. .++.++.||.|.|...
T Consensus 132 ~~------------------~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 132 VR------------------AGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred EE------------------cCC-EEEEcCEEEECCCcch
Confidence 11 111 4777888888887553
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0032 Score=66.83 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||+|.||++||..+. .+ .+|+|+||.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G--~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SH--LRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cC--CCEEEEEccCCCCC
Confidence 4579999999999999999986 47 99999999976554
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=59.59 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+-.|+.|.+ . ..+++++.|.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--------------------~-g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--------------------E-GHEVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--------------------C-CCCceEEEecCCc
Confidence 35789999999999999999986 3 3468888888643
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0032 Score=68.20 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||.|||.||..+++.| .+|+|+|+.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G--~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRG--LDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcC--CCEEEEeCCCCC
Confidence 468999999999999999999998 999999988654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=54.26 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=50.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||..|...+..|.+.+ .+|+|+++... ..+..+....++.++.+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~--------------------~~l~~l~~~~~i~~~~~~~~-- 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELE--------------------SELTLLAEQGGITWLARCFD-- 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCC--------------------HHHHHHHHcCCEEEEeCCCC--
Confidence 4679999999999999999999999 99999986422 11223334445655443211
Q ss_pred EEEecceeeccCEEEEccCC
Q 011535 98 SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~ 117 (483)
. .....|+.||+|||-
T Consensus 64 ---~-~dl~~~~lVi~at~d 79 (205)
T TIGR01470 64 ---A-DILEGAFLVIAATDD 79 (205)
T ss_pred ---H-HHhCCcEEEEECCCC
Confidence 1 112368999999997
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.017 Score=57.90 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~ 54 (483)
.++|+|||+|+.|+.+|..|.+.+ .+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g--~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeecc
Confidence 479999999999999999999888 76 99998764
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0039 Score=66.60 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=33.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||+|.|||+||..+++.+ +|+|+|+.+..+|
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G---~VvlleK~~~~gg 65 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG---TVAIITKDEPHES 65 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC---CEEEEECCCCCCC
Confidence 34579999999999999999999875 5999999876543
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.003 Score=67.72 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.5
Q ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 22 vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
|+|||+|.|||+||..+++.+ .+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--YHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--CCEEEEEecCCC
Confidence 689999999999999999998 999999998743
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0033 Score=61.25 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++++|||+|++|..+|.+|++.+ ..+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEccccC
Confidence 48999999999999999999974 4799999998753
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0041 Score=71.79 Aligned_cols=39 Identities=36% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||+|.||++||..+++.| .+|+|+||.+..||
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~G--a~VivlEK~~~~GG 446 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEccCCCCC
Confidence 3578999999999999999999999 99999999987665
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=65.04 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|++|+.+|..|++ .| .+|+|+.+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--------------------~G-~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--------------------AG-HPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecccc
Confidence 57899999999999999999986 45 47999988754
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.034 Score=57.34 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=27.7
Q ss_pred CceeeeccCCCC--Cc--chhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 381 NGLYVCGWLKRG--PT--GIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 381 p~vya~Gd~~~g--~~--~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.++.++||.+.- |. ..+..++.+|..+|+.|.+.|..+.
T Consensus 294 ~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~ 336 (447)
T PLN02463 294 QRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSR 336 (447)
T ss_pred CCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888642 21 2334789999999999999887653
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.02 Score=60.46 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHh-cCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~-~~~v~~~~~~~v~ 96 (483)
..++|+|||||+.|+.+|..|+..+ .+|+|+++.+.+. +. ..+.+.+. ..|++++.++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~--~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gI~i~~~~~v~ 411 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIV--KHVTVLEFAPELK--------AD--------QVLQDKLRSLPNVTIITNAQTT 411 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEECcccc--------cc--------HHHHHHHhcCCCcEEEECcEEE
Confidence 4579999999999999999999998 9999999876531 11 11233333 3589998887652
Q ss_pred e---------EEEecc---e---eeccCEEEEccCCC
Q 011535 97 S---------SVSLSE---L---RQLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~---------~~~~~~---~---~~~yd~vvlAtG~~ 118 (483)
. .+.+.+ + ...+|.|++|+|..
T Consensus 412 ~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 412 EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 1 122221 1 24599999999983
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.01 Score=66.73 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|++ .| .+|+++.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--------------------~G-~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--------------------EG-FPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeeCCC
Confidence 57999999999999999999986 44 47999998753
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0041 Score=66.08 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||+|.||++||..+ +.+ .+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G--~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERG--KNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcC--CCEEEEEccCC
Confidence 46999999999999999999 888 99999999864
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.022 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+-+|..|++ .+. +|+++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~--------------------~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD--------------------KGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccCC
Confidence 48999999999999999986 454 6999998854
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0046 Score=66.16 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 376 SSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+|++||+||+|||+. ++.+..+.++.+|..++.++..++..
T Consensus 402 ~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~ 444 (614)
T TIGR02061 402 RMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILD 444 (614)
T ss_pred CccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHh
Confidence 6789999999999964 55666667888899999999888754
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0053 Score=65.69 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||+|++|+.+|..+++.+ .+|+|+|+.+..||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcc
Confidence 3579999999999999999999999 9999999988776643
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0025 Score=57.42 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=47.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~ 99 (483)
++|+|||.|+.|+.+|..|++.| ++|+-+|.++..-..+..|..|-+ ++ .+...+.+..+..++.+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~-E~-~l~~ll~~~~~~~~l~~t~~------- 69 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIY-EP-GLDELLKENVSAGRLRATTD------- 69 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS--CT-THHHHHHHHHHTTSEEEESE-------
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhcccccc-cc-chhhhhccccccccchhhhh-------
Confidence 58999999999999999999999 999999988754333444443332 11 23333444444444443221
Q ss_pred EecceeeccCEEEEccCC
Q 011535 100 SLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 100 ~~~~~~~~yd~vvlAtG~ 117 (483)
.......+|.++||.+.
T Consensus 70 -~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 70 -IEEAIKDADVVFICVPT 86 (185)
T ss_dssp -HHHHHHH-SEEEE----
T ss_pred -hhhhhhccceEEEecCC
Confidence 11112369999999997
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.016 Score=60.15 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..++|+|||+|+.|+.+|..|++ .....+|+|+.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~-------------------~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK-------------------AHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh-------------------hCCCCeEEEEecCCC
Confidence 56899999999999999999974 122358999998864
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.011 Score=61.44 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=52.2
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceEEE
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVS 100 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~ 100 (483)
+|+|||.|++|+++|..|.++| ++|+++|+.+.+. .+.+ ...+...|++++.+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~-------------~~~~----~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPE-------------LLER----QQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchh-------------hHHH----HHHHHHcCCEEEECCccchh-h
Confidence 6899999999999999999999 9999999876531 1111 12233457887765432100 0
Q ss_pred ecceeeccCEEEEccCCC
Q 011535 101 LSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 101 ~~~~~~~yd~vvlAtG~~ 118 (483)
.......+|.||++.|..
T Consensus 62 ~~~~~~~~d~vv~s~gi~ 79 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGIP 79 (459)
T ss_pred hhHHhhcCCEEEECCCCC
Confidence 001223589999999973
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0058 Score=64.78 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||+|.||++||..+++. .+|+|+||.+..+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCCCC
Confidence 346999999999999999999874 89999999876443
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.046 Score=57.55 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|++ .|+ +|+|+.|++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~--------------------~Gi-~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELAR--------------------RGV-SFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 469999999999999999986 565 5888888753
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.029 Score=58.27 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..++|+|||+|..|+.+|..|.+.+ . +|+++++.+.. ..|.. .. ..+.++..|++++.+..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G--~~~Vtlv~~~~~~-------~~~~~--~~-----~~~~~~~~GV~i~~~~~ 333 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLG--AESVTIVYRRGRE-------EMPAS--EE-----EVEHAKEEGVEFEWLAA 333 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecCcc-------cCCCC--HH-----HHHHHHHCCCEEEecCC
Confidence 4689999999999999999999988 7 89999876431 11321 11 12334567888887754
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.05 Score=55.51 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=33.0
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
..++.++++..+.++. . +++.+.++.+.. .+...++.+|+||.|.|...
T Consensus 121 ~~~v~i~~~~~v~~~~--~-~~~~v~~v~~~~---------------~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 121 YPNFTLRMGAEVTGLI--E-EGGRVTGVRART---------------PDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred CCCcEEEeCCEEEEEE--E-eCCEEEEEEEEc---------------CCCcEEEEeCEEEECCCCch
Confidence 3579999999999887 3 355554444432 11114789999999999764
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.039 Score=56.10 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=28.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|++|+-+|..|++ .|. +|+|+.|++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL--------------------AGI-DSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh--------------------cCC-CEEEEEcCCc
Confidence 469999999999999999986 454 5888888764
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.067 Score=53.51 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.4
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ . -+|+++.|++.
T Consensus 3 dV~IvGaGpaGl~~A~~La~---------------------~-~~V~liE~~~~ 34 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG---------------------K-MKVIAIDKKHQ 34 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc---------------------c-CCEEEEECCCc
Confidence 69999999999999999986 3 47999998863
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.03 Score=56.85 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.|++
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~--------------------~G~-~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD--------------------AGL-SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEeCCC
Confidence 3579999999999999999986 555 589999875
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0067 Score=64.10 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=34.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
....+|+|||||.|||.||..++..+ .+|+|+||.+..+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcC--CcEEEEEccccCC
Confidence 35679999999999999999999999 9999999987543
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.015 Score=56.16 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=67.8
Q ss_pred ccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 13 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
......++|++|||||+.++..|--++..+ .++.|+=|...+- -.+ .+.+.....+.+...|++++.+
T Consensus 183 f~Lee~Pkr~vvvGaGYIavE~Agi~~gLg--sethlfiR~~kvL--------R~F--D~~i~~~v~~~~~~~ginvh~~ 250 (478)
T KOG0405|consen 183 FDLEEQPKRVVVVGAGYIAVEFAGIFAGLG--SETHLFIRQEKVL--------RGF--DEMISDLVTEHLEGRGINVHKN 250 (478)
T ss_pred cchhhcCceEEEEccceEEEEhhhHHhhcC--CeeEEEEecchhh--------cch--hHHHHHHHHHHhhhcceeeccc
Confidence 345567899999999999999999999999 8888887765431 111 1234455667777789999998
Q ss_pred eEEceEEEecce----------eeccCEEEEccCCCCCCC
Q 011535 93 VTLGSSVSLSEL----------RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 93 ~~v~~~~~~~~~----------~~~yd~vvlAtG~~~~~~ 122 (483)
+.+...+...++ ....|.|+.|+|. .|..
T Consensus 251 s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR-~Pnt 289 (478)
T KOG0405|consen 251 SSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR-KPNT 289 (478)
T ss_pred ccceeeeecCCCceEEEEeccccccccEEEEEecC-CCCc
Confidence 776443322221 1348999999996 3443
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.027 Score=56.41 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=30.2
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
..++.+. ...+.++. . ++++|.+|... .+.++.+|.||+|||.
T Consensus 108 ~~nl~i~-~~~V~~l~--~-e~~~v~GV~~~------------------~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 108 HPNLTII-QGEVTDLI--V-ENGKVKGVVTK------------------DGEEIEADAVVLATGT 150 (392)
T ss_dssp STTEEEE-ES-EEEEE--E-CTTEEEEEEET------------------TSEEEEECEEEE-TTT
T ss_pred CCCeEEE-EcccceEE--e-cCCeEEEEEeC------------------CCCEEecCEEEEeccc
Confidence 5788885 56788886 3 46777776542 2358999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.046 Score=56.26 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=30.6
Q ss_pred cCceeeeccCCCC--C-----cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P-----TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~-----~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++++++||++.- | .|+. .|+..|..+|+.|.+.+..+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~-~A~~SG~lAAeai~~a~~~~ 338 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMD-LAIAAGEAAAKTVLSAMKSD 338 (428)
T ss_pred cCCeEEEecccccccccCceeeeHH-HHHHHHHHHHHHHHHHHhcC
Confidence 3789999999831 2 4565 89999999999999988754
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.053 Score=54.73 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=28.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++|+|||+|.+|+-+|..|++ .|. +|+++.+++.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--------------------HGY-SVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEcCCCC
Confidence 479999999999999999986 454 5888887753
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.035 Score=61.46 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~ 55 (483)
..++|+|||||..|+.+|..+.+.+ .+ |+++++.+.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtlv~r~~~ 605 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRSE 605 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--CCeEEEeeecCc
Confidence 4589999999999999999999998 76 999987653
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.045 Score=56.34 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=29.6
Q ss_pred cCceeeeccCCCC--C-----cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P-----TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~-----~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+++.++||++.- | .|+. .|+..|..+|+.|.+.+..+
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~-~A~~SG~~AAe~i~~a~~~~ 338 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMD-LAIASAQAAATTVIAAKERA 338 (429)
T ss_pred cCCeEEEecccccccccCccccchh-HHHHHHHHHHHHHHHHHhcC
Confidence 4689999998842 2 3555 89999999999999888743
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.044 Score=47.85 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=38.1
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc-cccCCHH-HHHHHhcCCCeeEEecc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV-QAACTAK-ELREILGIKNLYVHIRE 239 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~-~~~f~~~-el~~~~~~~~~~~~~~~ 239 (483)
+|||+|++|+-++..|.+.. .....-+|+|+.+++.- ...+... .-..++..+.-.+.+..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~----------------~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~ 63 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA----------------DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFP 63 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc----------------CCCCCCEEEEEcCCCccccccCCCCCChHHhhccccccccccc
Confidence 59999999999999998621 01234689999997553 2234333 33445555544444443
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0073 Score=60.47 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|+|||||+||..||.+.++.| .+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~G--a~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLG--ARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcC--CceEEeecc
Confidence 45789999999999999999999999 999998766
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.037 Score=57.74 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ 56 (483)
..++|+|||+|+.|+.+|..+.+.+ . +|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~g--a~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQG--AKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEccccCCC
Confidence 4689999999999999999988887 5 78888766543
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0092 Score=63.94 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=39.2
Q ss_pred CCcccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcc-------hhHhhHHHHHHHHHHHHHHHh
Q 011535 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTG-------IIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 358 ~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~-------~~~~a~~~g~~~a~~I~~~l~ 416 (483)
.|+.+|.+|++.... .+++||+||+|+|+. +..| .+..++-.|+.++.++++++.
T Consensus 357 GGi~id~~~~v~~~~----~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 419 (583)
T PRK08205 357 GGIPTTVDGEVLRDN----TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAR 419 (583)
T ss_pred CCeeECCCceEecCC----CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHhh
Confidence 466777777775443 278999999999964 4333 233678888899998887764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.079 Score=53.74 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=27.8
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
.+|+|||+|++|+-+|..|.+ .| -+|+|+.++
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~--------------------~G-~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR--------------------AG-LDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEccC
Confidence 479999999999999999987 45 468888887
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0096 Score=63.57 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~ 55 (483)
...++||||||+||+.+|.+|++ .+ .+|+|+|+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g--~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPD--VSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCC--CeEEEecCCCc
Confidence 45799999999999999999999 56 99999999853
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.011 Score=61.15 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||||..|+.+|..++.+| ++|+|+|+.+...|
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsG 49 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASG 49 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCC--CeEEEEecCcccCc
Confidence 36789999999999999999999999 99999999986544
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.033 Score=58.31 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|||+|.+|+++|..|.+ .|. +|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--------------------~G~-~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--------------------LGA-RVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeCCc
Confidence 56899999999999999988875 454 688887664
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=52.56 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=27.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||||.+|+-+|..|++ .|. +|+++.+++.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR--------------------YGH-EPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHH--------------------CCC-ceEEEeCCCC
Confidence 69999999999999999986 454 5888887754
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.05 Score=55.71 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCe
Q 011535 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGM 337 (483)
Q Consensus 258 ~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~ 337 (483)
-+.+.+.|.+... +.++++++++.+++++ . ++++|.++.+... .++....+.+..
T Consensus 140 g~~~~~~l~~~~~---------~~gv~i~~~~~~~~Li--~-e~g~V~Gv~~~~~-------------~~g~~~~i~A~a 194 (417)
T PF00890_consen 140 GKALIEALAKAAE---------EAGVDIRFNTRVTDLI--T-EDGRVTGVVAENP-------------ADGEFVRIKAKA 194 (417)
T ss_dssp HHHHHHHHHHHHH---------HTTEEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCEEEEEEESE
T ss_pred HHHHHHHHHHHHh---------hcCeeeeccceeeeEE--E-eCCceeEEEEEEC-------------CCCeEEEEeeeE
Confidence 3445556665554 6679999999999998 4 4789998887741 256667899999
Q ss_pred EEEeeecCC
Q 011535 338 VLKSIGYKS 346 (483)
Q Consensus 338 vi~a~G~~~ 346 (483)
||+|||--.
T Consensus 195 VIlAtGG~~ 203 (417)
T PF00890_consen 195 VILATGGFG 203 (417)
T ss_dssp EEE----BG
T ss_pred EEeccCccc
Confidence 999999544
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.011 Score=62.44 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+|+|||+|.|||+||..++ + .+|+|+|+.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~--~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--P--RPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--c--CCEEEEECCCC
Confidence 44679999999999999999996 4 69999999876
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.1 Score=55.47 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred cCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHh
Q 011535 380 ENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 380 ~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~ 416 (483)
++|+|.+|-+ +|.+|-- .|..||-.++-|.+..+.
T Consensus 359 ~~~lf~AGQi-nGt~GYe-EaaaqGl~AgiNaa~~~~ 393 (618)
T PRK05192 359 IKGLFFAGQI-NGTTGYE-EAAAQGLIAGINAALKVQ 393 (618)
T ss_pred CCCeEECccc-CCChHHH-HHHHHHHHHHHHHHHHhc
Confidence 6888888887 6777777 789999999988888776
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.14 Score=54.41 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
..++++++++.++++. . +++.+. +.+.+. .+|+..++.+|+||.|.|...
T Consensus 139 ~~~v~i~~~~~v~~i~--~-~~~~v~-v~~~~~-------------~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 139 QPGVTLRYGHRLTDFE--Q-DADGVT-ATVEDL-------------DGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CCCceEEeccEEEEEE--E-CCCeEE-EEEEEC-------------CCCcEEEEEEEEEEecCCcch
Confidence 3579999999999997 4 344343 333221 134445789999999999764
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.07 Score=56.17 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.7
Q ss_pred CceeeeccCCCC--Cc--chhHhhHHHHHHHHHHHHHHHhcC
Q 011535 381 NGLYVCGWLKRG--PT--GIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 381 p~vya~Gd~~~g--~~--~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+++.++||.+.- |. ..+..++..|..+|+.|++.+...
T Consensus 372 ~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 372 QKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNV 413 (529)
T ss_pred CCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence 457788888742 22 223367899999999999988754
|
|
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.039 Score=52.19 Aligned_cols=49 Identities=31% Similarity=0.392 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC-----CCCeEEEEecCCC-------CCCceecccCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH-----QEAQVDIIDRLPT-------PFGLVRSGVAP 66 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~-----~~~~v~lie~~~~-------~ggl~~~g~~p 66 (483)
..++|+|||+|..||++|..+.+.. |..+|++++..+. +.|+++....+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~ 62 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD 62 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC
Confidence 4679999999999999998888733 7799999987765 34666654433
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.15 Score=51.92 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++|+|||+|.+|+-+|..|.+ .|. +|+|+.|++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--------------------~G~-~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--------------------RGW-AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 689999999999999999986 454 5888887753
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0099 Score=61.18 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=0.0
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+.+++++.+.++. . ++++|.+|.+... .| ..++.++.+|-|||.
T Consensus 102 e~gv~v~~~t~v~~v~--~-~~~~i~~V~~~~~--------------~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 102 EAGVEVLLGTRVVDVI--R-DGGRITGVIVETK--------------SG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred cccccccccccccccc--c-ccccccccccccc--------------cc-ccccccccccccccc
Confidence 6799999999999998 5 4678888877642 22 468999999999994
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.051 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.3
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
-.|+|||+|+.|+-+|-.+.+
T Consensus 4 ~DviIIG~GPAGl~AAiya~r 24 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAAR 24 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHH
Confidence 479999999999999999986
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.049 Score=58.08 Aligned_cols=61 Identities=25% Similarity=0.228 Sum_probs=45.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. .. ... ..+.....+++++.++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g--~~Vtli~~~~~~~--------~~----~~~---~~~~~~~~gV~i~~~~~V 202 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYA--SKVTVIVREPDFT--------CA----KLI---AEKVKNHPKIEVKFNTEL 202 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccC--CEEEEEEeCCccc--------cC----HHH---HHHHHhCCCcEEEeCCEE
Confidence 4689999999999999999999988 9999999876420 11 111 122334568999888765
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.022 Score=59.34 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|.+ .+. +|+++.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--------------------~G~-~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--------------------AGV-QVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------cCC-eEEEEecCCC
Confidence 57899999999999999999885 454 6899887754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.13 Score=53.01 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=36.1
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. .++++++.++.+... .+....+.++.||+|+|-
T Consensus 142 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~~--------------~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLI--QDDQGTVVGVVVKGK--------------GKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HcCCEEEeCCEeeEeE--ECCCCcEEEEEEEeC--------------CCeEEEEecceEEEecCC
Confidence 6789999999999997 323567877765431 233346899999999993
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.092 Score=53.32 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc--ccCCHHHHHHHhcCCCeeEEe
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ--AACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~--~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+|+|||+|.+|+.+|..|++... ....|+|+..++.+. .+|+..+-..++.++..++.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~------------------~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~ 63 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPR------------------PSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSA 63 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------------------CCCceEEeccccccCCCccCCCCCchhhhccccccccc
Confidence 479999999999999999997321 222388888886542 456655544455555444444
Q ss_pred c
Q 011535 238 R 238 (483)
Q Consensus 238 ~ 238 (483)
.
T Consensus 64 ~ 64 (474)
T COG4529 64 F 64 (474)
T ss_pred c
Confidence 3
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.11 Score=54.54 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=26.6
Q ss_pred CceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+|+.+||+++. | .|.- .++.+|..++..|...+.+
T Consensus 272 gRv~L~GDAAH~~~P~~GqG~n-~gi~DA~~La~~La~~l~g 312 (493)
T PRK08244 272 GRIFLAGDAAHIHFPAGGQGLN-VGLQDAMNLGWKLAAAIKG 312 (493)
T ss_pred CcEEEeecceeccCCccccccc-cchhhHHHHHHHHHHHHcC
Confidence 479999999852 2 3444 6888888888888877754
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.011 Score=66.55 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.|.|.+|.. ++|++||+||+|||+.++.+.+..++-.|+.++.++..++..
T Consensus 361 ~GGi~vd~~--~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDEH--ARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecCC--CcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence 377788877 789999999999998765555547899999999999887653
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.11 Score=55.15 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=28.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|++|+-+|..|.+ .|. +|+|+.|+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~--------------------~G~-~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQ--------------------YGV-RVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCC
Confidence 3579999999999999999986 454 688888885
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=51.74 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=39.5
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l 415 (483)
++.+++. ++|+++|+|++||++....|+. .|..+|..+|..|+...
T Consensus 438 ri~~d~~--~~t~i~gLy~aGdGAG~argI~-~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 438 RIKVDED--LSTSIKGLYPAGDGAGLARGIV-SAAADGIKAAEGIARKY 483 (486)
T ss_pred eEeeccc--ceeeecceEEccccccccchhH-HHhhhhHHHHHHHHHHh
Confidence 4566665 8899999999999988788887 79999999999998865
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.074 Score=53.96 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=28.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--------------------SGL-KVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEeCCCc
Confidence 369999999999999999986 454 6888888754
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.016 Score=56.64 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...+|+|||||.+|-+.|..|+|.| .+|++|||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdG--RrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDG--RRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCC--cEEEEEecc
Confidence 4578999999999999999999999 999999998
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.032 Score=60.52 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|++ .|. +|+++.+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--------------------~G~-~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--------------------AGV-QVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--------------------cCC-cEEEEeCCCC
Confidence 57999999999999999999986 454 6999988764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.11 Score=53.22 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=27.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+-+|..|.+ .|. +|+|+.|+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--------------------RGI-EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEcCCc
Confidence 69999999999999999986 455 5888888753
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.053 Score=53.80 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=29.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+.|+.+++++.+.++. . +++++.+|+. .++ ++.+|.||+|+|.....
T Consensus 159 ~~Gv~i~~~~~V~~i~--~-~~~~v~gv~~------------------~~g-~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSID--V-DGGRVTGVRT------------------SDG-EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HTT-EEEESEEEEEEE--E-ETTEEEEEEE------------------TTE-EEEECEEEE--GGGHHH
T ss_pred Hhhhhccccccccchh--h-cccccccccc------------------ccc-ccccceeEeccccccee
Confidence 4578888888888876 3 3455444443 333 49999999999986543
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.15 Score=51.62 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|.+|+.+|..|.+ .|. +|+|+.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--------------------AGW-DVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 34689999999999999999986 454 6899998753
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.19 Score=52.99 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=38.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee-cCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG-YKSV 347 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G-~~~~ 347 (483)
+.++++++++.+.++. . ++++|.++.+... +++..++.++.||+|+| |.++
T Consensus 202 ~~gv~i~~~t~v~~l~--~-~~g~V~Gv~~~~~--------------~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 202 ERKIPLFVNADVTKIT--E-KDGKVTGVKVKIN--------------GKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HcCCeEEeCCeeEEEE--e-cCCEEEEEEEEeC--------------CCeEEEEecCeEEEeCCCcccC
Confidence 6689999999999997 4 4677877765431 23445799999999998 6654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=52.27 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=18.8
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~ 21 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ 21 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH
Confidence 69999999999999999986
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.086 Score=53.67 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=27.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ .+ .-+|+|+.+++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~--------------------~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ--------------------AAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCc
Confidence 59999999999999999986 33 247888888753
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.15 Score=52.03 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=29.9
Q ss_pred cCceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+++..+||++.- | .|+. .|+..|..+|+.|.+.+..+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~-~A~~sg~~aa~~i~~~~~~~ 311 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIY-FAAKSGRMCAEAIVEESRLG 311 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchH-HHHHHHHHHHHHHHHHHhcC
Confidence 3689999999852 2 3565 89999999999999887643
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.15 Score=54.23 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=35.5
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.++.+. . +++++.++++.+. .+++..++.|+.||.|+|.-.
T Consensus 161 ~~Ga~i~~~t~V~~i~--~-~~~~v~gv~v~d~-------------~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 161 EHGAQILTYHEVTGLI--R-EGDTVCGVRVRDH-------------LTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred hCCCEEEeccEEEEEE--E-cCCeEEEEEEEEc-------------CCCcEEEEECCEEEECCChhH
Confidence 5688888888888876 3 3556666665431 134445899999999999643
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.17 Score=50.96 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.9
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||||.+|+-+|..|++ .|. +|+|+.|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--------------------QGH-EVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 69999999999999999986 454 5888888864
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.048 Score=57.52 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
-..|+|+|||+|.+|.-.|..|++.. .+|++.-|.+
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~~a--~~v~~s~R~~ 216 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSRVA--KKVYLSTRRG 216 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTTTS--CCEEEECC--
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHHhc--CCeEEEEecc
Confidence 46799999999999999999999987 7888887774
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.17 Score=52.96 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=28.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..|+|||+|++|+-+|..|.+ .|. +|+++.|+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~--------------------~G~-~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELAL--------------------AGV-DVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEecCC
Confidence 479999999999999999986 454 588888875
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.25 Score=51.47 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=35.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. . +++++.++.... .+++...+.++.||+|+|-
T Consensus 143 ~~gv~i~~~t~v~~l~--~-~~g~v~gv~~~~--------------~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 143 RLGVEIRYDAPVTALE--L-DDGRFVGARAGS--------------AAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HCCCEEEcCCEEEEEE--e-cCCeEEEEEEEc--------------cCCceEEEECCEEEECCCC
Confidence 6689999999999987 4 467777766532 1344457899999999983
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.17 Score=51.56 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
.+|+|||+|++|+-+|..|.+ .|. +|+++.++
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~--------------------~G~-~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE--------------------SDL-RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence 479999999999999999986 454 58888886
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.15 Score=51.90 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=27.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+|+|||+|.+|+-+|..|.+ .|. +|+|+.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG--------------------SGL-EVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhc--------------------CCC-EEEEEcCCC
Confidence 69999999999999999986 454 688888775
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.059 Score=56.41 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|++|+.+|..|.+ .+ .+|+++.+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--------------------~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--------------------AG-HTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecCCC
Confidence 46899999999999999999986 44 46999987754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.24 Score=52.79 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|++|+-+|..|.+ .|. +|+++.++.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~--------------------~G~-~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ--------------------QGV-PVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEeCCC
Confidence 3579999999999999999986 454 588888775
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.0095 Score=55.97 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=35.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~gg 58 (483)
.+.++|+|||||..|..+|++|++++ ..+.|+|||.....+|
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 35689999999999999999999986 3589999998866544
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
++|+|||+|++|+-+|..|.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~ 22 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQ 22 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 479999999999999999985
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.23 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCeEEEEcCCchHHHHHHHHhc
Q 011535 159 TDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
..+|+|||||++|+-+|..|++
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~ 32 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLAR 32 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhc
Confidence 3579999999999999999986
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.28 Score=49.79 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=29.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|.+ .|. +|+|+.|++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~--------------------~g~-~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR--------------------QGI-KVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEeeCcc
Confidence 4689999999999999999986 454 6888888754
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.14 Score=51.71 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=28.0
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~--------------------~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--------------------SGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--------------------CCC-EEEEEeCCCc
Confidence 48999999999999999986 454 7999998864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.07 Score=59.99 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||||+.|+.+|..|++ .+ .+|+|+.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--------------------~G-~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--------------------AG-HPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecccc
Confidence 46799999999999999999986 45 47999988754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.038 Score=56.91 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+.+|..|++ +.+ .+|+|+.+.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~-------------------~~g-~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLK-------------------HER-VKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-------------------hcC-CeEEEEecCCCC
Confidence 56899999999999999998764 123 469999988643
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.2 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.|+|||+|++|+-+|..|++ .+ .+|.|+.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~--------------------~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--------------------PG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEccCCC
Confidence 48999999999999999875 34 47999998753
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.026 Score=45.52 Aligned_cols=34 Identities=38% Similarity=0.443 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+.++|+|||||..|..-+..|.+.+ .+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCc
Confidence 5789999999999999999999999 999999865
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.27 Score=49.76 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=28.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|++|+-+|..|++ .|. +|+++.|+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ--------------------SGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CCC-eEEEEecCCC
Confidence 479999999999999999986 454 6999988754
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.058 Score=61.37 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|++|+.+|..|++ .+ .+|+|+.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--------------------~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--------------------YG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCC
Confidence 46899999999999999999986 44 47999987754
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.23 Score=51.99 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=28.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-.|+|||+|++|+-+|..|.+ .|+ +|.|+.+.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar--------------------~Gi-~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL--------------------CGL-NTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeCCCc
Confidence 479999999999999998886 455 4888888753
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.19 Score=51.18 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEcCCchHHHHHHHHhc
Q 011535 163 VILGQGNVALDVARILLR 180 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~ 180 (483)
+|||+|++|+-+|..+++
T Consensus 1 vIIGgG~aGl~aAi~aa~ 18 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR 18 (400)
T ss_pred CEEEEeHHHHHHHHHHHh
Confidence 599999999999999986
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.033 Score=56.82 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=37.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~ 60 (483)
.++.=|||+|.|+|+||.+|.+-+ |+-+|+|+|+.+.+||-+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 467889999999999999999987 889999999999888754
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.027 Score=58.03 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=40.0
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~ 64 (483)
+.....+++|||||-+|-..+..+.+...-..|-++|.++..-|.--.|+
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred cccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 34456899999999999999999998765457888899988766666664
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.21 Score=50.73 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=28.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|.+ .|. +|+|+.+++.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 479999999999999999986 454 5888888763
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.024 Score=56.57 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
+..++++|||+|+-||.||.+|++.+ .+|.++|+....||-
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g--~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGA 52 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcC--cceEEEEEeeecCcc
Confidence 56789999999999999999999999 999999999766654
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.23 Score=50.34 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
-.++++|||||.+|++.|..|++ .|. +|+++.+.+.+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--------------------~G~-~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--------------------MGF-KVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--------------------cCC-eEEEEecCCccc
Confidence 35789999999999999999997 666 588998887554
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.24 Score=50.14 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=18.8
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|++|+-+|..|++
T Consensus 5 dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred cEEEECcCHHHHHHHHHHHh
Confidence 69999999999999999986
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.42 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.2
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
-+|+|||+|++|+-+|..|++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhh
Confidence 469999999999999999986
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.24 Score=50.18 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.0
Q ss_pred CceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+++.+||++.. | .|+. .|+..|..+|+.|.+.+..
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~-~A~~sg~~aa~~i~~~l~~ 304 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIY-FAMKSGQMAAQAIAEYLQN 304 (388)
T ss_pred CCEEEEeccccCcCCcccccHH-HHHHHHHHHHHHHHHHHhc
Confidence 569999999852 2 4555 8999999999999988864
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.088 Score=53.85 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||||..|--||..++-+| +++.|+|+.+...|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhccc--ceeEEEecccccCCcc
Confidence 3489999999999999999999999 9999999998765543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.19 Score=54.77 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
..++|+|||||..|+.+|..+.+.+ . +|+++.+.+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~g--a~~Vt~i~~~~~ 503 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHG--ASNVTCAYRRDE 503 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CCeEEEeEecCC
Confidence 4579999999999999999999988 6 6999887643
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.19 Score=54.67 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...++|+|||||..|+.+|..+.+.+ . +|+|+.+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~G--a~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLG--AESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 35689999999999999999999987 6 699998765
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.025 Score=53.90 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+++||||||..|++.|.+|.-+.|..+|.|+|+...
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 3456899999999999999999999988899999999854
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.37 Score=48.83 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
-+|+|||+|.+|+-+|..|++ .|. +|+++.+..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~--------------------~G~-~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ--------------------HGF-SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEcCCC
Confidence 479999999999999999986 444 688888764
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.036 Score=52.95 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=33.2
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.|+|||+|.|||+|+..+...+ -.|+|+|+....||
T Consensus 11 pvvVIGgGLAGLsasn~iin~g--g~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKG--GIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcC--CeEEEEeccCCcCC
Confidence 7999999999999999999998 67999999987776
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.025 Score=58.28 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-C-------cchhHhhHHHHHHHHHHHHHH
Q 011535 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-P-------TGIIATNLYCAEETVASISED 414 (483)
Q Consensus 356 ~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~-------~~~~~~a~~~g~~~a~~I~~~ 414 (483)
...|+.+|.+++|+..+. ..+||+||+|.++.| . ...+..++.-|+.+++++++.
T Consensus 367 T~GGl~id~~~~Vl~~~g----~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 367 TRYGLVVDATARVRLNDA----VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred eccceEECCCceEECCCC----CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 345888999999986543 578999999987532 1 112346788899999988765
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.38 Score=48.54 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=27.6
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.|+|||+|++|+-+|..|++ .|.-+|+++.|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--------------------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCceEEEEeCCCc
Confidence 48999999999999999986 45136888888753
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.044 Score=47.90 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+|+|||||..|.++|..|++++ .+|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccH
Confidence 6899999999999999999999 9999998764
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.33 Score=51.59 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.5
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
.|+|||+|.+|+++|..+++
T Consensus 2 DViVIGaG~AGl~aA~ala~ 21 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR 21 (617)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 48999999999999999986
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=57.58 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|.+.+ .+ |+|+|..+... ..+.+.++..+++++.++.+.
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G--~~vV~vv~~~~~~~------------------~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAG--IAVVAIIDARADVS------------------PEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEccCcchh------------------HHHHHHHHHcCCEEEcCCeEE
Confidence 3589999999999999999999998 64 78888764320 123345567789998887652
Q ss_pred e--------EEEec----c-eeeccCEEEEccCCC
Q 011535 97 S--------SVSLS----E-LRQLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~--------~~~~~----~-~~~~yd~vvlAtG~~ 118 (483)
. .+.+. + ....+|.|+++.|..
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 1 12222 1 123599999999983
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.066 Score=51.46 Aligned_cols=36 Identities=33% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||+|.|||-+|..|+..+ .+|+|+|....
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcC--ceEEEEccccc
Confidence 3578999999999999999999999 99999998753
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.05 Score=58.19 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++++|||||.||+.+|.+|.+ . .+|+|+|+.+.+
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~--~~VLllE~G~~~ 89 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-N--FSVLLLERGGVP 89 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-C--CcEEEEecCCCC
Confidence 35899999999999999999999 5 999999998754
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.28 Score=51.69 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|.+|+-+|..|++ .| .+|+++.|..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~--------------------~G-~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAK--------------------DG-RRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEECcC
Confidence 4579999999999999999986 34 4789998874
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.029 Score=53.94 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=66.7
Q ss_pred hhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeE
Q 011535 9 SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 9 ~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~ 88 (483)
+....+.+..+-+-+|||||+.+|.||-.|.-.+ .+|++.=|+-.. -++ ..++.+.+.+.+...|++
T Consensus 188 SDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg--~~vtVmVRSI~L---------rGF--Dqdmae~v~~~m~~~Gik 254 (503)
T KOG4716|consen 188 SDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFG--YDVTVMVRSILL---------RGF--DQDMAELVAEHMEERGIK 254 (503)
T ss_pred ccccccccCCCCceEEEccceeeeehhhhHhhcC--CCcEEEEEEeec---------ccc--cHHHHHHHHHHHHHhCCc
Confidence 3344556667788999999999999999999999 888887665322 121 236777777888888999
Q ss_pred EEeCeEEceE---------------EEecceeeccCEEEEccCC
Q 011535 89 FFGNVTLGSS---------------VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 89 ~~~~~~v~~~---------------~~~~~~~~~yd~vvlAtG~ 117 (483)
|...++..+. .+..+....||.|+.|.|.
T Consensus 255 f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 255 FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 9877543211 0111223459999999996
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.067 Score=46.75 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
.-..++|+|||||..|..-+..|.+.+ .+|+||++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcC
Confidence 346789999999999999999999999 99999953
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.39 Score=48.91 Aligned_cols=34 Identities=38% Similarity=0.433 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|++|+-+|..|++ .|. +|+|+.+++.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~--------------------~G~-~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG--------------------SGL-RVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh--------------------CCC-EEEEEeCCCC
Confidence 469999999999999999986 454 6888888754
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.043 Score=52.69 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+...|-|||||.||-.||++++++| +.|.|+|..|.-
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcC--CcEEEEEccccc
Confidence 3467999999999999999999999 999999988753
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.58 Score=50.74 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=37.2
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.+|++++++.+.+++ . ++++|.++...+. .++....+.++.||+|||-
T Consensus 182 ~~gV~i~~~t~v~~Li--~-d~g~V~GV~~~~~-------------~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 182 AGTVKMYTRTEMLDLV--V-VDGRARGIVARNL-------------VTGEIERHTADAVVLATGG 230 (640)
T ss_pred hcCCEEEeceEEEEEE--E-eCCEEEEEEEEEC-------------CCCcEEEEECCEEEECCCC
Confidence 5689999999999987 4 3678888766431 1344567999999999995
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.44 Score=49.32 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=29.3
Q ss_pred cCceeeeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 380 ENGLYVCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 380 ~p~vya~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.++++.+||++.. -.|+. .|+..|..+|+.|.+.++.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~-~Am~sg~~AAe~i~~~~~~ 349 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIY-FAAKSGRMCAEAIVEGSEN 349 (450)
T ss_pred CCCcEEEeccccCCCccccccHH-HHHHHHHHHHHHHHHHHhc
Confidence 4578899999852 24566 8999999999999988764
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.39 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=28.1
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|..|+-+|..|.+ .+.-+|+|+.|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--------------------~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--------------------HSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cCCCCEEEEecCCc
Confidence 69999999999999999986 44336889888754
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=49.13 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=31.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
...+|+|||+|-.|-++|..|++.| + +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G--Vg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG--IGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC--CCEEEEEeCCEe
Confidence 4679999999999999999999998 5 8999997743
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.045 Score=58.08 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++|||||.||+.+|.+|++.+ ..+|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCCC
Confidence 5899999999999999999874 469999999864
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.38 Score=48.68 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|.+ .|. +|+|+.+...
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~--------------------~G~-~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR--------------------AGA-SVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc--------------------CCC-eEEEEeCCCC
Confidence 479999999999999999986 454 6889988753
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.057 Score=57.24 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....++||||+|.||..+|..|+..+ .+|+|+|..+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g--~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAG--LSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCC--CeEEEEeCCCC
Confidence 35689999999999999999999666 99999999864
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.55 Score=47.34 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.7
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||||.+|+-+|..|++
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 69999999999999999986
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.13 Score=54.63 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=63.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc-
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~- 96 (483)
+.++-+|||||.=|+.+|..|...+ .+++++.-.+.+ |...+ ...--..+...+++.|++|+++....
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~G--m~~~Vvh~~~~l---MerQL------D~~ag~lL~~~le~~Gi~~~l~~~t~e 212 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLG--MEVTVVHIAPTL---MERQL------DRTAGRLLRRKLEDLGIKVLLEKNTEE 212 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCC--CceEEEeecchH---HHHhh------hhHHHHHHHHHHHhhcceeecccchhh
Confidence 4566899999999999999999999 999999755432 11111 11223346666777899998876542
Q ss_pred -------eEEEecceee-ccCEEEEccCCCCCC
Q 011535 97 -------SSVSLSELRQ-LYHVVVLAYGAESDR 121 (483)
Q Consensus 97 -------~~~~~~~~~~-~yd~vvlAtG~~~~~ 121 (483)
..+.++++.. .+|.||.|+|. .|+
T Consensus 213 i~g~~~~~~vr~~DG~~i~ad~VV~a~GI-rPn 244 (793)
T COG1251 213 IVGEDKVEGVRFADGTEIPADLVVMAVGI-RPN 244 (793)
T ss_pred hhcCcceeeEeecCCCcccceeEEEeccc-ccc
Confidence 1244455543 59999999998 444
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.076 Score=49.44 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++++|||+|..|.+.|..|.+.| .+|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCH
Confidence 58999999999999999999999 9999999874
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.11 Score=53.84 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|+|||.|+.|+.+|..|++++.+++|+.+|.++..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 5899999999999999999998655889999988653
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.68 Score=48.57 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=34.4
Q ss_pred ceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecC
Q 011535 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 345 (483)
.+|++++++.+.++. . +++++.++.... .+....+.++.||+|+|--
T Consensus 142 ~gi~i~~~~~v~~l~--~-~~g~v~Gv~~~~---------------~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 142 PNIRIIEGENALDLL--I-ETGRVVGVWVWN---------------RETVETCHADAVVLATGGA 188 (488)
T ss_pred CCcEEEECeEeeeee--c-cCCEEEEEEEEE---------------CCcEEEEEcCEEEECCCcc
Confidence 589999999999987 4 356777665543 1223478999999999953
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=47.54 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
-..++|+|||||-.|...+..|.+.+ .+|+|+++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcC
Confidence 35789999999999999999999999 99999975
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.16 Score=54.78 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|||+|+.|+.+|..|.+ .+. +|+++.+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--------------------~G~-~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--------------------MGY-EVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence 67899999999999999999986 454 6999987754
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.22 Score=55.48 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|||+|+.|+.+|..|+. .| .+|+++.+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--------------------~G-h~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--------------------SG-HNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEcccc
Confidence 68999999999999999999986 34 5799998763
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.49 Score=47.77 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=27.5
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.|+|||+|++|+-+|..|.+ .....+|.+|.+....
T Consensus 1 DviIvGaGpAGlslA~~l~~-------------------~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLAD-------------------ARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHh-------------------cCCCCEEEEEcCCccc
Confidence 38999999999999999933 1234689999876543
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.17 Score=54.18 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+++|+|||+|++|+-+|..|.+ .|. +|+++.+...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--------------------~G~-~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--------------------MGH-AVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence 368999999999999999999886 565 5999987754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.1 Score=46.74 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=28.6
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|.|||+|.-|...|..++..| ++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence 5899999999999999999999 99999998753
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.16 Score=43.06 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~ 53 (483)
...++++|||+|-+|-.++.+|...+ .+ |+|+.|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALG--AKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 35789999999999999999999998 75 9999875
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.1 Score=51.64 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~ 53 (483)
..++|+|+||||+|++.|..|.... .+.+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 4689999999999999999998554 36799999987
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.34 Score=41.51 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
+|+|||.|-.|-.+|..|.+.| + +++++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G--v~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG--VGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCC
Confidence 5899999999999999999999 6 799999774
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.46 Score=50.06 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~ 53 (483)
..-+++|||||-+|.++|++|++.+ .+ .++.|+.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g--~k~avlle~~ 72 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRG--MKGAVLLERS 72 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHcc--ccceEEEeee
Confidence 4568999999999999999999999 77 4444544
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.38 Score=53.44 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 154 PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 154 ~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+..+.+++|+|||.|++|+-+|..|.+ -...|++..|++..
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk---------------------~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNK---------------------AGHTVTVYERSDRV 1820 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhh---------------------cCcEEEEEEecCCc
Confidence 344578999999999999999999986 33579999998754
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.48 Score=47.74 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.|+|||+|..|+.+|..|.+ .....+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~-------------------~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQR-------------------ARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHh-------------------cCCCCeEEEEeCCC
Confidence 38999999999999999985 11234688888875
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.16 Score=51.53 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
...+||+||||..|-+.+..|.+..|+.+|.|+||.+.+.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 4579999999999999999999999999999999997654
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.18 Score=44.54 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=30.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+.+|+|+|+|.+|..|+..|...+ ++++++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCH
Confidence 4689999999999999999999999 9999999764
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.22 Score=48.14 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~ 55 (483)
..-+|+|||||-.|.+.|..|.++. .+++|+++|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 3568999999999999999998764 3499999999864
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.19 Score=42.70 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++++|||+|-+|--++..|.. .++++|+++.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--------------------~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--------------------LGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--------------------TTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--------------------cCCCEEEEEECCH
Confidence 68999999999999999999986 7999999999973
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.6 Score=47.21 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=36.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
+.||+++.++.+.+++ .++++++.++...+. .++....+.++.||+|||
T Consensus 178 ~~gv~i~~~~~~~~Li--~~~~g~v~Gv~~~~~-------------~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 178 KYDCNFFIEYFALDLI--MDEDGECRGVIAMSM-------------EDGSIHRFRAHYTVIATG 226 (617)
T ss_pred hCCCEEEeceEEEEEE--ECCCCEEEEEEEEEC-------------CCCeEEEEECCcEEEeCC
Confidence 5689999999999977 324678888765331 145556889999999996
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.47 Score=43.19 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||.|-.|..+|..|++.| + +++++|...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G--Vg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG--IDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEECCc
Confidence 3579999999999999999999999 6 699998764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.46 Score=44.36 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.1
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|||||-.|+-||..|+. ..+..+|.++..++.
T Consensus 2 fivvgggiagvscaeqla~-------------------~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQ-------------------LEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHh-------------------hCCCCcEEEEeccHH
Confidence 6899999999999999986 245567888776653
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.14 Score=53.83 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++.+|||||.||...|..|.+. |+.+|.|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 3568999999999999999999987 57999999998664
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.22 Score=50.94 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=31.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
++|.|||.|..|+..|..|++.| ++|+++|+++..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~ 35 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEK 35 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHH
Confidence 37999999999999999999999 999999988653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.19 Score=40.38 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|||||.+|..-+..|.+ .+ .+|+++....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--------------------~g-A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--------------------AG-AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--------------------CT-BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CC-CEEEEECCch
Confidence 68999999999999999999986 45 5899988763
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.12 Score=50.05 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+-...|+|+|||||-+|+.||+.|+--- .+|+++|=.+
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAGiv--~hVtllEF~~ 387 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAP 387 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHhhh--heeeeeecch
Confidence 3356899999999999999999999987 7999998543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.45 Score=47.19 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|-.|-.+|..|++.| + +++|+|+..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG--vg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG--IGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCc
Confidence 4678999999999999999999999 7 899999874
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.22 Score=48.87 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++..++|+|||+|-.|.+.|..|++.+ ++|+++.+++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC
Confidence 345679999999999999999999998 9999998753
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.38 Score=44.88 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||.|-.|-.+|..|++.| + +++|+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G--vg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG--VGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCE
Confidence 4679999999999999999999998 5 899998764
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=2.1 Score=46.52 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=26.0
Q ss_pred CceeeeccCCCC--Cc---chhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKRG--PT---GIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~g--~~---~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+||.+||+++. |. |.- .++++|..++..|+..+.+
T Consensus 340 gRVfLaGDAAH~hsP~~GQGmN-~giqDA~nLawkLa~vl~g 380 (634)
T PRK08294 340 PRVFIAGDACHTHSAKAGQGMN-VSMQDGFNLGWKLAAVLSG 380 (634)
T ss_pred CCEEEEecCccCCCCccccchh-hHHHHHHHHHHHHHHHHcC
Confidence 589999999852 32 333 6788888888888776654
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.68 Score=44.58 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=37.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~ 345 (483)
...+++..+..+++++ . .+|+|.+|++.+. .|+...+..|.||+|+|--
T Consensus 157 pe~~ki~~nskvv~il--~-n~gkVsgVeymd~--------------sgek~~~~~~~VVlatGGf 205 (477)
T KOG2404|consen 157 PELVKILLNSKVVDIL--R-NNGKVSGVEYMDA--------------SGEKSKIIGDAVVLATGGF 205 (477)
T ss_pred hHHHhhhhcceeeeee--c-CCCeEEEEEEEcC--------------CCCccceecCceEEecCCc
Confidence 4567888899999998 4 5899999987652 4555578889999999843
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.18 Score=57.03 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||||.|||+||..+++.| .+|+|+||.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G--~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHG--ANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence 3468999999999999999999998 99999999864
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.51 Score=52.39 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=28.2
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~ 214 (483)
+|+|||+|+.|+-+|..|.+ .+ ..+|+|+.++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~--------------------~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKL--------------------LDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHH--------------------hCCCCeEEEEecCCC
Confidence 69999999999999998875 32 357999998864
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.17 Score=50.89 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~ 53 (483)
....+++|||+||+|+++|+.++.. .+...|.++|..
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 3568999999999999999999864 356899999977
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.3 Score=52.08 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||+|.||++||..+++.+++.+|+|+||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4699999999999999999998754599999999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 483 | ||||
| 1cjc_A | 460 | Structure Of Adrenodoxin Reductase Of Mitochondrial | 1e-105 | ||
| 1lqt_A | 456 | A Covalent Modification Of Nadp+ Revealed By The At | 3e-83 | ||
| 2c7g_A | 456 | Fpra From Mycobacterium Tuberculosis: His57gln Muta | 2e-82 |
| >pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450 Systems Length = 460 | Back alignment and structure |
|
| >pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic Resolution Structure Of Fpra, A Mycobacterium Tuberculosis Oxidoreductase Length = 456 | Back alignment and structure |
|
| >pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant Length = 456 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 483 | |||
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 0.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 0.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 3e-21 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 3e-20 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 8e-06 |
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 532 bits (1373), Expect = 0.0
Identities = 180/470 (38%), Positives = 259/470 (55%), Gaps = 24/470 (5%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-----QVDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I + + TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAE-LDGITDEDAAA 240
Query: 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L A +P G R + F F P V + +
Sbjct: 241 VGKVCKQNIKVLRGYAD---REPRPGHRRMVFRFLTSPIEIKG----KRKVERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373
L G G+ A TGE E+L +V++S+GY+ VP GLPFD+ G +PN+ GR+
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGRING--- 350
Query: 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSS-GLPKPGRE 432
YV GW+KRGPTG+I TN A++TV ++ ++L + P+ +
Sbjct: 351 ------SPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHAD 404
Query: 433 GLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482
+ L R + V + W+ ID+ E+ G +P+ KL + +LL++
Sbjct: 405 QVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIG 454
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460 | Back alignment and structure |
|---|
Score = 525 bits (1355), Expect = 0.0
Identities = 217/473 (45%), Positives = 289/473 (61%), Gaps = 23/473 (4%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VI
Sbjct: 3 QEQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVI 62
Query: 76 NQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135
N F++ + +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L GV S
Sbjct: 63 NTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFS 122
Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195
AR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L TDI A
Sbjct: 123 ARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL 181
Query: 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255
AL S ++ V++VGRRGP+Q A T KELRE++ + + D + + +
Sbjct: 182 GALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADF--LGLQDRIKEAA 239
Query: 256 RIQRRVYELLSKAAAS-----ASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310
R ++R+ ELL + A +++ R FFR P L S + +G+
Sbjct: 240 RPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDG-RRAAGIRLA 298
Query: 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVL 369
T L+G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD G+VPN+ GRV+
Sbjct: 299 VTRLEGIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVV 357
Query: 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKP 429
GLY GW+KRGPTG+I T + + T + +DL+ G L S P+P
Sbjct: 358 D---------VPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG---PRP 405
Query: 430 GREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482
G + LLD+R V PV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 406 GSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLL 458
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 3e-21
Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 96/383 (25%)
Query: 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
V V+G+GPAG AE+ ++ V + DR GL+ G+ P K V+ +
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRV 179
Query: 80 RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF 139
+++ + N +G SL ELR+ + V++A G R + PG L + +A ++
Sbjct: 180 KLLADAGVIYHPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDY 239
Query: 140 VWWYNGHPDGKNLSPDLKSTDTA-----VILGQGNVALDVARILLRPTEELATTDIASYA 194
+ N G + + A V+LG G+ A+D R
Sbjct: 240 LTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVR------------------ 281
Query: 195 WTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254
TA+ R+G A +K LY R D + M
Sbjct: 282 -TAI------------RQG-------ATS------VKCLY--RR---------DRKNMPG 304
Query: 255 SRIQRRVYELLSKAAASASSQPMLGQRE-LHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
S QR V A A + E + F++ P+ F V+GV +
Sbjct: 305 S--QREV--------AHA-------EEEGVEFIWQAAPEGFTGD----TVVTGVRAVRIH 343
Query: 314 LKGGGP-GKQYAV---GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369
L G+Q G+ EF + +V+K++G++ + + + G +L
Sbjct: 344 LGVADATGRQTPQVIEGS-EFT-VQADLVIKALGFEPEDLPNAF--DEPELKVTRWGTLL 399
Query: 370 KNISGDSSQVENGLYVCGWLKRG 392
+ + ++ G++ G + RG
Sbjct: 400 VDHRTKMTNMD-GVFAAGDIVRG 421
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 3e-20
Identities = 54/375 (14%), Positives = 105/375 (28%), Gaps = 128/375 (34%)
Query: 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
++ ++G+GPA A + + + + I ++ GL S + P+ ++ +
Sbjct: 189 KIALLGAGPASISCASFLARLGYSD--ITIFEKQEYVGGLSTSEI----PQFRLPYD--- 239
Query: 80 RVVQHERCS-------FFGNVTLG-SSVSLSELR-QLYHVVVLAYGAESDRALGIPG--E 128
VV E +L + ++L+ L+ + Y + G + I
Sbjct: 240 -VVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLT 298
Query: 129 DLIGVHSAREF---VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEEL 185
G +++++F V + SP ++LG G+ A D A
Sbjct: 299 QDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCAT--------- 349
Query: 186 ATTDIASYAWTALEGSSIR----KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
S++R +V+LV R+
Sbjct: 350 ---------------SALRCGARRVFLVFRK----------------------------- 365
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDS 293
+ A E+ F+ F P
Sbjct: 366 ------GFVNI------------------RAV------PEEVELAKEEKCEFLPFLSPRK 395
Query: 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP 353
+ G + V F +T GK + L +V+ + G SV +
Sbjct: 396 VIVKG---GRIVAVQFVRTEQ--DETGKWNED-EDQIVHLKADVVISAFG--SVLRDPKV 447
Query: 354 FDNHKGIVPNIRGRV 368
+ I N
Sbjct: 448 KEALSPIKFNRWDLP 462
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 29/170 (17%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKI 73
+ VVG+GPAG A A H QV + D G + P E
Sbjct: 371 VQKKNLAVVGAGPAGLAFA-INAAARGH---QVTLFDAHSEIGGQFNIAKQIPGKEEFYE 426
Query: 74 VINQFSRVVQHERCSFFGNVT--LGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
+ + R+++ VT L +V+ +L+ + +LA G R I G D
Sbjct: 427 TLRYYRRMIEVT------GVTLKLNHTVTADQLQA-FDETILASGIVP-RTPPIDGIDHP 478
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
V S + + + P G I+G G + D A L +P
Sbjct: 479 KVLSYLDVL--RDKAPVGNK----------VAIIGCGGIGFDTAMYLSQP 516
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 44/282 (15%), Positives = 81/282 (28%), Gaps = 84/282 (29%)
Query: 223 ELREILGIKNLYVHIREDDLIKSPTDEE---------EMKNSRI-QRRV-------YELL 265
+ IL + + D +I S K + Q+ V Y+ L
Sbjct: 41 MPKSILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 266 SKAAASASSQPMLGQR---ELHFVFFRKPDSFLESN-ERSGHVSGVHFEKTALKGGGPGK 321
+ QP + R E + F + N R + + AL P K
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAK 151
Query: 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVEN 381
+ G+ G K+ V + +++
Sbjct: 152 NVLI---------DGV--LGSG-KTWVAL----------------DVCLSYKVQ-CKMDF 182
Query: 382 GLYVCGWLKRG----PTGIIA--TNLY----CAEETVASISEDLEQGVLASSSGL----- 426
++ WL P ++ L + + S +++ + + + L
Sbjct: 183 KIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 427 PKPGREGLLQLLDN-RNVRPVPFSAWEKIDSEEKRLGSLRNK 467
KP LL +L N +N + AW + K L + R K
Sbjct: 240 SKPYENCLL-VLLNVQNAK-----AWNAFNLSCKILLTTRFK 275
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 50/216 (23%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
+ RV VVG+GP+G A + L + V + + G V A
Sbjct: 390 SDARVLVVGAGPSGLEAA-RALGVRGY---DVVLAEAGRDLGGRVTQESALPGLS----- 440
Query: 76 NQFSRVVQH--ERCSFFGNVT--LGSSVSLSELRQL-YHVVVLAYGA-------ESDRAL 123
+ RV ++ + NV S ++ ++ + + V+ A GA
Sbjct: 441 -AWGRVKEYREAVLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTT 499
Query: 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN--VALDVARILLRP 181
+P + + V + + L V+ + + VA
Sbjct: 500 ALPIAEGMQVLGPDDL------------FAGRLPDGKKVVVYDDDHYYLGGVVA------ 541
Query: 182 TEELA-----TTDIASYAWTALEGSSIRKVYLVGRR 212
E LA + + A + ++ +V + RR
Sbjct: 542 -ELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRR 576
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 483 | |||
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.98 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.98 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.98 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.97 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.97 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.97 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.97 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.97 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.97 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.97 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.97 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.97 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.97 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.97 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.97 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.97 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.97 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.97 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.97 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.97 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.97 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.97 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.97 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.97 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.97 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.97 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.97 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.97 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.97 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.97 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.97 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.97 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.97 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.97 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.97 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.97 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.97 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.97 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.97 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.97 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.97 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.97 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.97 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.97 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.96 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.96 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.96 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.96 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.96 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.96 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.96 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.96 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.96 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.96 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.95 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.95 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.95 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.95 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.95 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.95 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.94 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.94 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.94 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.94 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.94 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.92 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.91 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.89 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.88 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.87 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.82 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.69 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.69 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.29 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.21 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.87 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.83 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.66 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.64 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.62 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.62 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.6 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.56 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.52 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.47 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.4 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.38 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.37 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.36 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.35 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.33 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.33 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.33 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.32 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.29 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.27 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.24 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.23 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.21 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.2 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.2 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.2 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.19 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.18 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.18 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.18 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.17 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.17 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.17 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.17 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.15 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.14 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.12 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.12 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.1 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.1 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.1 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.08 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.08 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.06 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.06 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.04 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.04 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.03 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.01 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.99 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 97.97 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.97 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 97.97 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 97.97 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 97.94 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.93 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.91 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.91 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 97.89 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.89 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.88 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.88 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.88 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.88 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.87 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.87 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.86 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 97.86 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.85 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.83 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.82 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.82 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.8 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.8 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.8 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.79 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.78 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.78 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.78 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 97.77 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.77 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.76 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.76 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.76 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.76 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.75 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.75 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.75 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.75 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.75 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 97.75 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.74 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.74 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.74 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.74 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.72 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.72 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.71 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.7 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.69 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.68 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.67 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.67 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 97.66 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.64 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.64 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.64 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.64 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.63 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.63 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.62 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.61 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 97.61 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.6 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.6 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.6 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.58 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.57 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.57 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 97.56 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.56 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.54 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.54 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.54 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.5 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.5 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 97.47 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.47 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.46 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.46 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.46 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.43 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.41 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.41 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.41 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.38 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.37 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.37 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.36 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.36 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.35 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.35 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.34 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 97.32 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.31 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 97.3 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.29 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 97.29 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 97.27 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.26 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.26 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 97.26 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.25 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.25 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.25 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.2 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.19 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.19 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.18 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.17 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.17 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 97.17 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.16 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 97.16 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.15 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.15 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.13 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.11 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.11 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.1 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.1 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.1 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.1 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.09 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.06 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.06 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.04 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.02 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.0 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 96.99 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 96.98 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 96.97 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 96.95 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.95 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 96.93 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 96.92 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 96.9 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 96.9 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 96.9 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 96.89 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 96.86 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 96.86 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 96.86 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 96.8 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.79 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 96.78 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.75 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 96.74 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.72 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 96.7 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 96.68 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 96.68 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 96.63 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 96.61 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.55 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 96.49 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 96.47 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 96.43 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 96.41 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 96.41 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.39 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.32 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 96.31 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 96.29 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 96.27 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 96.27 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.26 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 96.24 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 96.21 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.18 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.17 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.16 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 96.14 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 96.13 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.12 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 96.1 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 96.08 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 95.97 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 95.94 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 95.9 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 95.89 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 95.84 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 95.8 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 95.8 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 95.79 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 95.78 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 95.77 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 95.74 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 95.67 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.59 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 95.59 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 95.57 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.54 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.53 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 95.51 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 95.37 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 95.36 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.35 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 95.33 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 95.31 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 95.24 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.21 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.2 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 95.19 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 95.17 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.15 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.09 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 95.01 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 94.89 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 94.85 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 94.8 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 94.76 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.71 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 94.7 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 94.48 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.46 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.44 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 94.42 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.35 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 94.3 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 94.19 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 93.96 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.96 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 93.95 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 93.84 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.83 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.62 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.57 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.36 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.28 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 93.21 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.1 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 92.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.92 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 92.71 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 92.68 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.61 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 92.25 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 92.2 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.08 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 91.94 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 91.58 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 91.57 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 91.55 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.41 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 91.21 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.18 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 91.12 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 91.04 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 91.01 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 91.0 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 90.93 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 90.76 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 90.76 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 90.75 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.67 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 90.62 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 90.58 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 90.55 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 90.54 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 90.52 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 90.47 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 90.37 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 90.31 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.01 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 89.98 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 89.97 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 89.95 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 89.9 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 89.89 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 89.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.69 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 89.64 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 89.56 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 89.55 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 89.53 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.52 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.46 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 89.44 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 89.28 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.28 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 89.26 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 89.25 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 89.25 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 89.24 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 89.18 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 89.15 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 89.11 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.08 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 89.0 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 88.93 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 88.89 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 88.78 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 88.55 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 88.44 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 88.4 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 88.29 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 88.21 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 88.02 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 88.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 87.89 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.84 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 87.74 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 87.72 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 87.71 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 87.67 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 87.66 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 87.56 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 87.5 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 87.43 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 87.39 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 87.36 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 87.33 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 87.32 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 87.3 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 87.28 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 87.28 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 87.27 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 87.23 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 87.23 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 87.19 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 87.11 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 87.1 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 87.01 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 87.01 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 87.01 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 87.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 86.93 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 86.92 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 86.86 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 86.83 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.8 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 86.77 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 86.75 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 86.75 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 86.6 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 86.45 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 86.37 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 86.34 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 86.21 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 86.21 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 86.21 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 86.15 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 86.15 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 86.12 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 86.08 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 86.05 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 85.94 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 85.87 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 85.85 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 85.76 |
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-66 Score=532.64 Aligned_cols=447 Identities=39% Similarity=0.644 Sum_probs=367.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHh-cCC----CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQ----EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~-~~~----~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.+++|+||||||||+++|..|++ ..+ +++|+|||+.+.+||+++|+++|+++..+++..++.+++...+++|+.+
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 81 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN 81 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEee
Confidence 35799999999999999999999 722 3999999999999999999999999988899999999999899999999
Q ss_pred eEEceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCC-CCCCCCCCCCCeEEEEcCCchH
Q 011535 93 VTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLSPDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 93 ~~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~vvVIG~G~~g 171 (483)
+.++++++++++...||+||||||+..++++++||.++++++++.+++.||++++++ .+.. ++ .+++|+|||+|++|
T Consensus 82 v~v~~~v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~-~~-~~~~vvVIG~G~~g 159 (456)
T 1lqt_A 82 VVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSP-DL-SGARAVVIGNGNVA 159 (456)
T ss_dssp CCBTTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC-CC-CSSEEEEECCSHHH
T ss_pred EEECCEEEECCCeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchh-hc-CCCEEEEECCCHHH
Confidence 776655655555567999999999954788899999889999999999999998876 3332 34 67999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|..|++..++|..|||+.++++.|+.++.++|+++.|+++++..|+.+|+|++.++|++++.+++.++. .+.....
T Consensus 160 ~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~-~~~~~~~ 238 (456)
T 1lqt_A 160 LDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELD-GITDEDA 238 (456)
T ss_dssp HHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGT-TCCHHHH
T ss_pred HHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhc-cchhhhh
Confidence 999999999888899999999999999999999999999999999999999999999999999998877763 2222223
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceE
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~ 331 (483)
...++..+++.+.|.+++.. ......++|+++++..+.++. + ++++.++++..++++.++.|+.....+|+.+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~---~~~~~~~gv~i~~~~~~~~i~--~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~ 311 (456)
T 1lqt_A 239 AAVGKVCKQNIKVLRGYADR---EPRPGHRRMVFRFLTSPIEIK--G--KRKVERIVLGRNELVSDGSGRVAAKDTGERE 311 (456)
T ss_dssp HHHCHHHHHHHHHHHHHHTC---C-CTTSEEEEEECSEEEEEEE--C--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEE
T ss_pred hhccHHHHHHHHHHHHHhhc---CCCCCCceEEEEeCCCCeEEe--c--CCcEeEEEEEEEEecCCCcccccccCCCceE
Confidence 33467777778888776541 011223899999999999998 5 5678889888777654433333333456657
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+++||+||+|+|++|+++.++ ..+++|.+.+++.+ +.++.|+|||+|||+++|.++++.|+.+|..+|.+|
T Consensus 312 ~i~~d~vi~a~G~~p~~l~gl--------~~d~~g~i~vn~~~-rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i 382 (456)
T 1lqt_A 312 ELPAQLVVRSVGYRGVPTPGL--------PFDDQSGTIPNVGG-RINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTL 382 (456)
T ss_dssp EEECSEEEECSCEECCCCTTS--------CCBTTTTBCCEETT-EETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHH
T ss_pred EEEcCEEEEccccccCCCCCC--------cccCCCCeeECCCC-cCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHH
Confidence 899999999999999875443 34445666666653 336889999999999999987768999999999999
Q ss_pred HHHHhcCcCCCC-CCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 412 SEDLEQGVLASS-SGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 412 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
+.++.++.+... .....+.+..+..+|+.+++.+++|.+|++||++|+.+|+..||+|+||++++|||+++.
T Consensus 383 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~g~~r~k~~~~~~m~~~~~ 455 (456)
T 1lqt_A 383 IKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGL 455 (456)
T ss_dssp HHHHHHHHHTTCSCCC--CHHHHHHHHHHHHCTTCEEHHHHHHHHHHHHHHHGGGTSSCCCCCSHHHHHHHHC
T ss_pred HHHHHhCcccccccCCCCCchHHHHHHHHHcCCCeecHHHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHhc
Confidence 999987655310 001245778899999999999999999999999999999999999999999999999874
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-65 Score=524.71 Aligned_cols=447 Identities=47% Similarity=0.780 Sum_probs=365.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+||||||||+++|..|++.+++.+|+|||+.+.+||++++++.|+++..+++...+.++++..+++|+.++.+++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 84 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR 84 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEee
Confidence 46899999999999999999999987799999999999999999999899988888888888999999999999988766
Q ss_pred EEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHH
Q 011535 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~ 177 (483)
++++.+....||+||||||+..++.+++||.+.++++++.++..||+.++++.....++ .+++|+|||+|++|+|+|..
T Consensus 85 ~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~-~~~~vvVIGgG~~g~e~A~~ 163 (460)
T 1cjc_A 85 DVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARI 163 (460)
T ss_dssp TBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHH
T ss_pred EEEeccceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCC-CCCEEEEECCCHHHHHHHHH
Confidence 56555544579999999999645778999999899999999999999988775544344 57999999999999999999
Q ss_pred HhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHH
Q 011535 178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257 (483)
Q Consensus 178 L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (483)
|++++++|..|||++++++.|+..++++|+|+.|+++.+++||++|++++.++|++++.+++.++.. ........++.
T Consensus 164 L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~--~~~~~~~~~~~ 241 (460)
T 1cjc_A 164 LLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARP 241 (460)
T ss_dssp HHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTT--HHHHTTTSCHH
T ss_pred HhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcc--hhhhhhhccHH
Confidence 9999999999999999999999999999999999999999999999999999999998887766531 11111123456
Q ss_pred HHHHHHHHHHHHHhcC-----CCCCCCcceEEEeecCCcceeecccCCCC-ceEEEEEeeeeeeCCCCCceeeccCCceE
Q 011535 258 QRRVYELLSKAAASAS-----SQPMLGQRELHFVFFRKPDSFLESNERSG-HVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (483)
Q Consensus 258 ~~r~~~~l~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~v~~~~~~~g-~v~~v~~~~~~l~~~~~g~~~~~~~g~~~ 331 (483)
.+|+.+.|.+++.... ..+....+||+++++..+.++. +++++ ++.+|++..+.+..+ .+....+.+|+.+
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~--~~~~~~~v~~v~~~~~~l~~~-~~~~~~~~~g~~~ 318 (460)
T 1cjc_A 242 RKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGI-GEATRAVPTGDVE 318 (460)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESS-GGGCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEE--cCCCCceEEEEEEEEEEEccc-cCCCcccCCCceE
Confidence 6677777766653100 0000123899999999999998 41226 888898887665421 1111222355567
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCc-ccCCCCeeeecCCCCCCcc-cCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGI-VPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~-~~~~~G~v~v~~~~~~~t~-~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
+++||+||+|+|++|+++. |+ ..+++|.+.+|+. ++++ +|+|||+|||+++|.+++..|+.+|+.+|.
T Consensus 319 ~i~~d~Vi~a~G~~p~~l~--------gl~~~d~~g~i~vn~~--~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~ 388 (460)
T 1cjc_A 319 DLPCGLVLSSIGYKSRPID--------PSVPFDPKLGVVPNME--GRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 388 (460)
T ss_dssp EEECSEEEECCCEECCCCC--------TTSCCBTTTTBCCEET--TEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHH
T ss_pred EEEcCEEEECCCCCCCCCC--------CCcccccCCCeeECCC--CcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHH
Confidence 9999999999999998743 44 4555667777776 6677 799999999998999877789999999999
Q ss_pred HHHHHHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 410 SISEDLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 410 ~I~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
+|+.++.++.++.. ..+....+.++|+.+++.+++|.+|++||++|+.+|+..||+|+||++++|||+++.
T Consensus 389 ~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~w~~id~~e~~~g~~~g~~r~k~~~~~~m~~~~~ 459 (460)
T 1cjc_A 389 ILLQDLKAGHLPSG---PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLG 459 (460)
T ss_dssp HHHHHHHHTCSCCS---CCCTHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHHHHTSSCCCCCCHHHHHHHTT
T ss_pred HHHHHHHhCcCCCC---CCCchhHHHHHHHHcCCCeecHHHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHhc
Confidence 99999988766421 134667889999999999999999999999999999999999999999999999874
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=343.28 Aligned_cols=321 Identities=21% Similarity=0.314 Sum_probs=246.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+||||||||+++|..|++.+ ++|+|||+.+.+||++.|++ |.+...+++.....++++..+++|+.++.++
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 196 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVG 196 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence 46789999999999999999999999 99999999999999999988 8877778888888888888899999999887
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecC--CCCCCC-CC--CCCCCCCeEEEEcCCchH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG--HPDGKN-LS--PDLKSTDTAVILGQGNVA 171 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~--~~~~~~-~~--~~~~~~~~vvVIG~G~~g 171 (483)
.+++++++...||+||||||+..++.+++||.+.++++++.+|....+. ..+... .. .....+++|+|||+|++|
T Consensus 197 ~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a 276 (456)
T 2vdc_G 197 RDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTA 276 (456)
T ss_dssp TTBCHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHH
T ss_pred cEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhH
Confidence 6666665556799999999996677889999998999988776543211 000000 00 011268999999999999
Q ss_pred HHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHH
Q 011535 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (483)
Q Consensus 172 ~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (483)
+|+|..+.+ .+.++|++++|++... +|....+
T Consensus 277 ~d~A~~~~r--------------------~Ga~~Vtiv~r~~~~~----------------------------~p~~~~e 308 (456)
T 2vdc_G 277 MDCVRTAIR--------------------QGATSVKCLYRRDRKN----------------------------MPGSQRE 308 (456)
T ss_dssp HHHHHHHHH--------------------TTCSEEEEECSSCSTT----------------------------CSSCHHH
T ss_pred HHHHHHHHH--------------------cCCCEEEEEEeCCccC----------------------------CCCCHHH
Confidence 999999886 5778899999987542 2221111
Q ss_pred hhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee-CCCCCceeecc-CCc
Q 011535 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGE 329 (483)
Q Consensus 252 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~-~~~~g~~~~~~-~g~ 329 (483)
.+.+. +.||+++++..++++. + ++++.++++...++. .+.+|+..+.. +|+
T Consensus 309 ----------~~~~~-------------~~Gv~~~~~~~~~~i~--~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~ 361 (456)
T 2vdc_G 309 ----------VAHAE-------------EEGVEFIWQAAPEGFT--G--DTVVTGVRAVRIHLGVADATGRQTPQVIEGS 361 (456)
T ss_dssp ----------HHHHH-------------HTTCEEECCSSSCCEE--E--EEEEETTEEEEEEEEEEEECTTCCEEEEEEE
T ss_pred ----------HHHHH-------------HCCCEEEeCCCceEEe--C--CCcEEEEEEEEEEecccCCcCCccccccCCc
Confidence 01121 5689999999999997 4 566666666554432 12234433222 455
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
..++++|+||+|+|++|++.. .+.+..++.++++|+|.+|+.. ++|+.|+|||+|||++++..++ .|+.+|+.+|.
T Consensus 362 ~~~i~aD~Vi~A~G~~p~~~~--~~l~~~gl~~~~~G~i~vd~~~-~~Ts~~~VfA~GD~~~g~~~v~-~A~~~G~~aA~ 437 (456)
T 2vdc_G 362 EFTVQADLVIKALGFEPEDLP--NAFDEPELKVTRWGTLLVDHRT-KMTNMDGVFAAGDIVRGASLVV-WAIRDGRDAAE 437 (456)
T ss_dssp EEEEECSEEEECSCEECCCHH--HHHHSTTSCBCTTSSBCCCTTT-CBCSSTTEEECGGGGSSCCSHH-HHHHHHHHHHH
T ss_pred EEEEECCEEEECCCCCCCcch--hhcccCCeeECCCCCEEECCCC-CcCCCCCEEEeccccCCchHHH-HHHHHHHHHHH
Confidence 578999999999999997510 1446678888999999999864 6699999999999998887777 89999999999
Q ss_pred HHHHHHhcCc
Q 011535 410 SISEDLEQGV 419 (483)
Q Consensus 410 ~I~~~l~~~~ 419 (483)
+|..+|.+..
T Consensus 438 ~i~~~L~~~~ 447 (456)
T 2vdc_G 438 GIHAYAKAKA 447 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhcCC
Confidence 9999998753
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=274.35 Aligned_cols=286 Identities=19% Similarity=0.269 Sum_probs=190.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCC-----ChHHHHHHHHHHHhcCCeEEEe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP-----ETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~-----~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
..++|+||||||||++||.+|++.+ ++|+|||+.. +|| ++..+..+.++ ...++.........+.+..+..
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~~~-~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRAN--LKTVMIERGI-PGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY 81 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC-CCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc
Confidence 4589999999999999999999999 9999999864 555 44444444333 2234555555555555555554
Q ss_pred CeEEc-------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 92 NVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 92 ~~~v~-------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
+.... ..+........||+||||||+ .|+.|++||.+. .++.+..... . ....+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs-~~~~~~ipG~~~~~~~~v~~~~~~~----~---------~~~~~k~ 147 (312)
T 4gcm_A 82 GDIKSVEDKGEYKVINFGNKELTAKAVIIATGA-EYKKIGVPGEQELGGRGVSYCAVCD----G---------AFFKNKR 147 (312)
T ss_dssp CCCCEEEECSSCEEEECSSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHHH----G---------GGGTTCE
T ss_pred eeeeeeeeeecceeeccCCeEEEeceeEEcccC-ccCcCCCCChhhhCCccEEeeeccC----c---------cccCCCE
Confidence 43321 122233334569999999998 688889999763 2232211110 0 0115789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ ...+||++.|++.+....
T Consensus 148 vvViGgG~ig~E~A~~l~~---------------------~g~~Vtlv~~~~~~~~~~---------------------- 184 (312)
T 4gcm_A 148 LFVIGGGDSAVEEGTFLTK---------------------FADKVTIVHRRDELRAQR---------------------- 184 (312)
T ss_dssp EEEECCSHHHHHHHHHHTT---------------------TCSEEEEECSSSSCCSCH----------------------
T ss_pred EEEECCCHHHHHHHHHHHh---------------------cCCEEEEEecccccCcch----------------------
Confidence 9999999999999999985 346899999987542110
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
.. ....+. ..++..........+. . .+..........
T Consensus 185 -------~~----------~~~~~~-------------~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~---------- 221 (312)
T 4gcm_A 185 -------IL----------QDRAFK-------------NDKIDFIWSHTLKSIN--E-KDGKVGSVTLTS---------- 221 (312)
T ss_dssp -------HH----------HHHHHH-------------CTTEEEECSEEEEEEE--E-ETTEEEEEEEEE----------
T ss_pred -------hH----------HHHHHH-------------hcCcceeeecceeeee--c-cccccccceeee----------
Confidence 00 001111 4456555554444443 1 122222111111
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC-CcchhHhh
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTGIIATN 400 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~~~~~a 400 (483)
..+++...+++|.|++++|++|+. .+....++ .+++|+|.+|++ ++|++|||||+|||+.. +..+. .|
T Consensus 222 ---~~~~~~~~~~~d~v~~~~g~~~~~----~~~~~~g~-~~~~G~I~vd~~--~~Ts~pgIyA~GDv~~~~~~~~~-~A 290 (312)
T 4gcm_A 222 ---TKDGSEETHEADGVFIYIGMKPLT----APFKDLGI-TNDVGYIVTKDD--MTTSVPGIFAAGDVRDKGLRQIV-TA 290 (312)
T ss_dssp ---TTTCCEEEEECSEEEECSCEEESC----GGGGGGTC-BCTTSCBCCCTT--SBCSSTTEEECSTTBSCSCCSHH-HH
T ss_pred ---ecCCceeEEeeeeEEeecCCCcCc----hhHHhcce-ecCCCeEeeCCC--CccCCCCEEEEeecCCCcchHHH-HH
Confidence 225566799999999999999976 34445555 456899999987 88999999999999864 45555 79
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011535 401 LYCAEETVASISEDLEQ 417 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l~~ 417 (483)
+.+|+.+|.+|.++|++
T Consensus 291 ~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 291 TGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999864
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=274.33 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=198.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC----CCCceec-----cc--CCCCCChHHHHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT----PFGLVRS-----GV--APDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~----~ggl~~~-----g~--~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.++|+||||||||++||.+|++.+ ++|+|||+.+. ++|.+.. .+ .|.....+++...+.+.+...+.
T Consensus 4 ~yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~ 81 (314)
T 4a5l_A 4 IHDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGT 81 (314)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCc
Confidence 479999999999999999999999 99999999753 3443321 11 12223456777778888888888
Q ss_pred EEEeCeEEce-------EEEecc-eeeccCEEEEccCCCCCCCCCCCCCCCCCe--eecceeeeeecCCCCCCCCCCCCC
Q 011535 88 SFFGNVTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGV--HSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 88 ~~~~~~~v~~-------~~~~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v--~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
.+........ .+...+ ....||+||||||+ .|+.+++||.+.... .+...+. ... ....
T Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~-~~~~~~ipG~~~~~~~~~~~~~~~---~~~-------~~~~ 150 (314)
T 4a5l_A 82 TIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA-TAKRMHVPGEDKYWQNGVSACAIC---DGA-------VPIF 150 (314)
T ss_dssp EEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHHH---HTT-------SGGG
T ss_pred EEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc-cccccCCCccccccccceeeehhh---hhh-------hhhc
Confidence 8877665422 122222 23469999999999 688889999763211 1111111 111 0112
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .+ .+|+++.|.......
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~--------------------~G-~~Vt~v~~~~~~~~~------------------- 190 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTK--------------------YG-SKVIILHRRDAFRAS------------------- 190 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTT--------------------TS-SEEEEECSSSSCCSC-------------------
T ss_pred CCCeEEEECCChHHHHHHHHHHH--------------------hC-Ceeeeeccccccccc-------------------
Confidence 57899999999999999999986 34 579999987643210
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
.. ...+.. ...++..++...+.++. . .+....++++...
T Consensus 191 -----------~~-------------~~~~~~---------~~~~~~~~~~~~~~~i~--~-~~~~~~~~~~~~~----- 229 (314)
T 4a5l_A 191 -----------KT-------------MQERVL---------NHPKIEVIWNSELVELE--G-DGDLLNGAKIHNL----- 229 (314)
T ss_dssp -----------HH-------------HHHHHH---------TCTTEEEECSEEEEEEE--E-SSSSEEEEEEEET-----
T ss_pred -----------ch-------------hhhhhh---------cccceeeEeeeeeEEEE--e-eeeccceeEEeec-----
Confidence 00 000000 14566777777777776 3 3455556655441
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchh
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~ 397 (483)
.+++.++++||.|++++|++|+. .+.. ..+..+++|.+ ++++ ++|++|||||+|||+.++...+
T Consensus 230 --------~~~~~~~i~~d~vi~a~G~~pn~----~~l~-~~~~~~~~G~i-v~~~--~~Ts~pgIyA~GDv~~~~~~~~ 293 (314)
T 4a5l_A 230 --------VSGEYKVVPVAGLFYAIGHSPNS----KFLG-GQVKTADDGYI-LTEG--PKTSVDGVFACGDVCDRVYRQA 293 (314)
T ss_dssp --------TTCCEEEEECSEEEECSCEEESC----GGGT-TSSCBCTTSCB-CCBT--TBCSSTTEEECSTTTCSSCCCH
T ss_pred --------ccccceeeccccceEecccccCh----hHhc-ccceEcCCeeE-eCCC--CccCCCCEEEEEeccCCcchHH
Confidence 24566799999999999999987 2333 34677888987 4555 7899999999999998775434
Q ss_pred HhhHHHHHHHHHHHHHHHhc
Q 011535 398 ATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~~ 417 (483)
..|+.+|+.+|.+|.++|+.
T Consensus 294 ~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 294 IVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 47999999999999999864
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=276.73 Aligned_cols=291 Identities=15% Similarity=0.175 Sum_probs=211.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC----CCCCceeccc----CCCC---CChHHHHHHHHHHHhcC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----TPFGLVRSGV----APDH---PETKIVINQFSRVVQHE 85 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~----~~ggl~~~g~----~p~~---~~~~~~~~~~~~~~~~~ 85 (483)
...++|+||||||||+++|..|++.+ ++|+|||+.+ .+||.+.+.. .|.+ ....++..++.+.+.+.
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKF 97 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999 9999999954 6788765421 1333 34568888888999889
Q ss_pred CeEEEeCeEEceE-------EEe----cceeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCC
Q 011535 86 RCSFFGNVTLGSS-------VSL----SELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKN 151 (483)
Q Consensus 86 ~v~~~~~~~v~~~-------~~~----~~~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~ 151 (483)
+++++.+++...+ +.. ......||+||+|||+ .+..+++||.+ ..++.+..... ...
T Consensus 98 gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~----~~~---- 168 (338)
T 3itj_A 98 GTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA-SAKRMHLPGEETYWQKGISACAVCD----GAV---- 168 (338)
T ss_dssp TCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHHHH----TTS----
T ss_pred CCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC-CcCCCCCCCchhccCccEEEchhcc----cch----
Confidence 9999998844321 222 1123469999999999 57777888854 12333221111 100
Q ss_pred CCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCC
Q 011535 152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK 231 (483)
Q Consensus 152 ~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~ 231 (483)
....+++++|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 169 ---~~~~~~~v~vvG~G~~g~e~a~~l~~--------------------~-g~~v~~v~~~~~~~~--~----------- 211 (338)
T 3itj_A 169 ---PIFRNKPLAVIGGGDSACEEAQFLTK--------------------Y-GSKVFMLVRKDHLRA--S----------- 211 (338)
T ss_dssp ---GGGTTSEEEEECSSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCS--C-----------
T ss_pred ---hhcCCCEEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEEcCCccCC--C-----------
Confidence 01257899999999999999999986 3 458999998875321 0
Q ss_pred CeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEee
Q 011535 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (483)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~ 311 (483)
..+.+.+.+ ..||+++++..+.++. . +++.+..+++.+
T Consensus 212 ---------------------------~~~~~~l~~------------~~gv~i~~~~~v~~i~--~-~~~~~~~v~~~~ 249 (338)
T 3itj_A 212 ---------------------------TIMQKRAEK------------NEKIEILYNTVALEAK--G-DGKLLNALRIKN 249 (338)
T ss_dssp ---------------------------HHHHHHHHH------------CTTEEEECSEEEEEEE--E-SSSSEEEEEEEE
T ss_pred ---------------------------HHHHHHHHh------------cCCeEEeecceeEEEE--c-ccCcEEEEEEEE
Confidence 011122210 4599999999999998 4 355677777765
Q ss_pred eeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee-cCCCCCCcccCceeeeccCC
Q 011535 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK-NISGDSSQVENGLYVCGWLK 390 (483)
Q Consensus 312 ~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v-~~~~~~~t~~p~vya~Gd~~ 390 (483)
. .+++..+++||.||+|+|++|+. .+... ++.++++|++.+ +.. ++|+.|+|||+|||+
T Consensus 250 ~-------------~~g~~~~i~~D~vi~a~G~~p~~----~~~~~-~l~~~~~G~i~v~~~~--~~t~~~~vya~GD~~ 309 (338)
T 3itj_A 250 T-------------KKNEETDLPVSGLFYAIGHTPAT----KIVAG-QVDTDEAGYIKTVPGS--SLTSVPGFFAAGDVQ 309 (338)
T ss_dssp T-------------TTTEEEEEECSEEEECSCEEECC----GGGBT-TBCBCTTSCBCCCTTS--SBCSSTTEEECGGGG
T ss_pred C-------------CCCceEEEEeCEEEEEeCCCCCh----hHhhC-ceEecCCCcEEEcCcc--cccCCCCEEEeeccC
Confidence 1 14556789999999999999976 34444 888888999985 554 889999999999998
Q ss_pred CC-CcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 391 RG-PTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 391 ~g-~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+ +..+. .|+.+|..+|.+|.++|.+.
T Consensus 310 ~~~~~~~~-~A~~~g~~aa~~i~~~l~~~ 337 (338)
T 3itj_A 310 DSKYRQAI-TSAGSGCMAALDAEKYLTSL 337 (338)
T ss_dssp CSSCCCHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcccee-eehhhhHHHHHHHHHHHhcC
Confidence 75 45554 89999999999999999764
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=271.08 Aligned_cols=286 Identities=19% Similarity=0.242 Sum_probs=210.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEE-EecCCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~l-ie~~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v~~ 89 (483)
.+++|+||||||||+++|..|++.+ ++|+| ||+ +.+||.+.+. ..|.++ ...++..++.+.+.+.++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGG--LKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHT--CSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCC--CCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence 4579999999999999999999998 99999 999 6667765432 123433 55688888999999999999
Q ss_pred EeCeEEce------EEE--e--cceeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCC
Q 011535 90 FGNVTLGS------SVS--L--SELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDL 156 (483)
Q Consensus 90 ~~~~~v~~------~~~--~--~~~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~ 156 (483)
+.+..... .+. + .. ...||+||+|||+ .+..+++||.+. .++++...... . .
T Consensus 80 ~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~----~---------~ 144 (315)
T 3r9u_A 80 EMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGS-APKKAGFKGEDEFFGKGVSTCATCDG----F---------F 144 (315)
T ss_dssp ECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHHHHG----G---------G
T ss_pred EEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCC-CCCCCCCCChhhcCCCeEEeeecccc----c---------c
Confidence 88854432 111 1 12 4569999999998 677778888763 34433221110 0 1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEE
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~ 236 (483)
..+++++|||+|++|+|+|..|.+ . ..+|+++.|++.+. ..
T Consensus 145 ~~~~~v~viG~g~~~~e~a~~l~~--------------------~-g~~v~~~~~~~~~~--~~---------------- 185 (315)
T 3r9u_A 145 YKNKEVAVLGGGDTALEEALYLAN--------------------I-CSKIYLIHRRDEFR--AA---------------- 185 (315)
T ss_dssp GTTSEEEEECCBHHHHHHHHHHHT--------------------T-SSEEEEECSSSSCB--SC----------------
T ss_pred cCcCEEEEECCCHHHHHHHHHHHh--------------------h-CCEEEEEEeCCCCC--CC----------------
Confidence 156899999999999999999986 3 46899999886531 01
Q ss_pred eccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC
Q 011535 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (483)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~ 316 (483)
+... .+.+. +.||+++++..+.++. . +++++..+++..
T Consensus 186 ------------------~~~~---~~~~~-------------~~gv~~~~~~~v~~i~--~-~~~~~~~v~~~~----- 223 (315)
T 3r9u_A 186 ------------------PSTV---EKVKK-------------NEKIELITSASVDEVY--G-DKMGVAGVKVKL----- 223 (315)
T ss_dssp ------------------HHHH---HHHHH-------------CTTEEEECSCEEEEEE--E-ETTEEEEEEEEC-----
T ss_pred ------------------HHHH---HHHHh-------------cCCeEEEeCcEEEEEE--c-CCCcEEEEEEEc-----
Confidence 0000 01111 6799999999999997 4 355676676652
Q ss_pred CCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccC---CCC-cccCCCCeeeecCCCCCCcccCceeeeccCCC-
Q 011535 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDN---HKG-IVPNIRGRVLKNISGDSSQVENGLYVCGWLKR- 391 (483)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~---~~g-~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~- 391 (483)
.+|+..++++|.||+|+|++|++ .+.. ..| +..+++|++.+|++ ++|+.|+|||+|||+.
T Consensus 224 ---------~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~~~~g~l~~~~~g~i~vd~~--~~t~~~~v~a~GD~~~~ 288 (315)
T 3r9u_A 224 ---------KDGSIRDLNVPGIFTFVGLNVRN----EILKQDDSKFLCNMEEGGQVSVDLK--MQTSVAGLFAAGDLRKD 288 (315)
T ss_dssp ---------TTSCEEEECCSCEEECSCEEECC----GGGBCTTSCBSSCBCTTSCBCCCTT--CBCSSTTEEECGGGBTT
T ss_pred ---------CCCCeEEeecCeEEEEEcCCCCc----hhhhcccccceeeecCCCcEEeCCC--cccCCCCEEEeecccCC
Confidence 14555689999999999999976 2323 255 88888999999997 7899999999999985
Q ss_pred CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 392 GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 392 g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
++.... .|+.+|+.+|.+|.++|.+.
T Consensus 289 ~~~~~~-~A~~~g~~aa~~i~~~l~~~ 314 (315)
T 3r9u_A 289 APKQVI-CAAGDGAVAALSAMAYIESL 314 (315)
T ss_dssp CCCCHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhh-hHHhhHHHHHHHHHHHHHhc
Confidence 455555 79999999999999999764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=320.94 Aligned_cols=314 Identities=18% Similarity=0.235 Sum_probs=232.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
+.++|+||||||||++||..|++.| + +|+|||+.+.+||.+.+++ |.+...+++.....++++..|++|+.++.++
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G--~~~Vtv~E~~~~~GG~~~~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 262 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 262 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCcEEEEeCCCCCCccccccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence 4679999999999999999999999 8 7999999999999998888 7777777777777778888899999998875
Q ss_pred e-EEEeccee-eccCEEEEccCCCCCCCCCC-CCCC-CCCeeecceeeeeecCC--CCCCCCCCC-CCCCCeEEEEcCCc
Q 011535 97 S-SVSLSELR-QLYHVVVLAYGAESDRALGI-PGED-LIGVHSAREFVWWYNGH--PDGKNLSPD-LKSTDTAVILGQGN 169 (483)
Q Consensus 97 ~-~~~~~~~~-~~yd~vvlAtG~~~~~~~~i-pg~~-~~~v~~a~~~~~~~~~~--~~~~~~~~~-~~~~~~vvVIG~G~ 169 (483)
. +++++++. ..||+||||||+..++.+++ +|.+ .++++++.+|....+.. ......... ...+++|+|||||+
T Consensus 263 ~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~ 342 (1025)
T 1gte_A 263 ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGD 342 (1025)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSH
T ss_pred cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCCh
Confidence 3 45554443 46999999999854666554 4543 56899888776433210 000000000 11356999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..+.+ .+.++|++++|++.... +...
T Consensus 343 ~g~e~A~~~~~--------------------~G~~~Vtvv~r~~~~~~----------------------------~~~~ 374 (1025)
T 1gte_A 343 TAFDCATSALR--------------------CGARRVFLVFRKGFVNI----------------------------RAVP 374 (1025)
T ss_dssp HHHHHHHHHHH--------------------TTCSEEEEECSSCGGGC----------------------------CSCH
T ss_pred HHHHHHHHHHH--------------------cCCCEEEEEEecChhhC----------------------------CCCH
Confidence 99999999986 67789999999874321 1111
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
.+. +.+. +.||+++++..+.++. . +++++.++++...+. +++|..... +|+
T Consensus 375 ~e~----------~~~~-------------~~Gv~~~~~~~~~~i~--~-~~g~v~~v~~~~~~~--~~~g~~~~~-~g~ 425 (1025)
T 1gte_A 375 EEV----------ELAK-------------EEKCEFLPFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKWNED-EDQ 425 (1025)
T ss_dssp HHH----------HHHH-------------HTTCEEECSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCEEEE-EEE
T ss_pred HHH----------HHHH-------------HcCCEEEeCCCceEEE--c-cCCeEEEEEEEEeEE--cCCCCcccC-CCc
Confidence 111 1111 5689999999999997 4 467888888765443 223432222 344
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCC-CCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~-~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a 408 (483)
..++++|+||+|+|++|+.. .|... .|+.++++|+|.+|+.. ++|+.|+|||+|||+.++..++ .|+.+|+.+|
T Consensus 426 ~~~i~aD~Vi~A~G~~~~~~---~l~~~~~gl~~~~~G~I~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA 500 (1025)
T 1gte_A 426 IVHLKADVVISAFGSVLRDP---KVKEALSPIKFNRWDLPEVDPET-MQTSEPWVFAGGDIVGMANTTV-ESVNDGKQAS 500 (1025)
T ss_dssp EEEEECSEEEECSCEECCCH---HHHHHTTTSCBCTTSSBCCCTTT-CBCSSTTEEECSGGGCSCCCHH-HHHHHHHHHH
T ss_pred eEEEECCEEEECCCCCCCch---hhhhcccCceECCCCCEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHHH
Confidence 56899999999999987431 23333 47888889999999733 7899999999999998887777 7999999999
Q ss_pred HHHHHHHh
Q 011535 409 ASISEDLE 416 (483)
Q Consensus 409 ~~I~~~l~ 416 (483)
.+|..+|.
T Consensus 501 ~~i~~~L~ 508 (1025)
T 1gte_A 501 WYIHKYIQ 508 (1025)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=268.18 Aligned_cols=286 Identities=20% Similarity=0.230 Sum_probs=205.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCC---CChHHHHHHHHHHHhcCCeEEEe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~---~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
.++|+||||||||+++|..|++.+ .+|+|||+. .+||.+.+. ..|.+ ....++...+.+.+.+.+++++.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 84 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQ--LSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM 84 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC--CcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence 579999999999999999999998 999999998 566655421 11332 23557777888888888998877
Q ss_pred CeEEceE----------EEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCC
Q 011535 92 NVTLGSS----------VSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 92 ~~~v~~~----------~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
+.....+ +...++ ...||+||+|||+ .++.+++||.+. .+++.... .... ..
T Consensus 85 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~i~g~~~~~~~~~~~~~~----~~~~---------~~ 150 (325)
T 2q7v_A 85 DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA-DPRKLGIPGEDNFWGKGVSTCAT----CDGF---------FY 150 (325)
T ss_dssp CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHH----HHGG---------GG
T ss_pred eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhccCceEEEecc----CCHH---------Hc
Confidence 5443221 122222 2469999999998 577778888652 23332111 1100 11
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|++|+|+|..|.+ . ..+|+++.|++.+. +.
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~--~~----------------- 190 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTK--------------------F-ADEVTVIHRRDTLR--AN----------------- 190 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTT--------------------T-CSEEEEECSSSSCC--SC-----------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEeCCCcCC--cc-----------------
Confidence 56899999999999999999985 3 46899999886431 00
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+ .+.+.+. ...||+++++..+.++. . ++++..+++...
T Consensus 191 -----------------~----~~~~~l~------------~~~gv~i~~~~~v~~i~--~--~~~v~~v~~~~~----- 228 (325)
T 2q7v_A 191 -----------------K----VAQARAF------------ANPKMKFIWDTAVEEIQ--G--ADSVSGVKLRNL----- 228 (325)
T ss_dssp -----------------H----HHHHHHH------------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEET-----
T ss_pred -----------------h----HHHHHHH------------hcCCceEecCCceEEEc--c--CCcEEEEEEEEC-----
Confidence 0 0111111 14699999999999997 4 566666766531
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC-cch
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-TGI 396 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-~~~ 396 (483)
.+|+..+++||.||+|+|++|+. ++.... +.++++|++.+|++ ++|+.|+|||+|||+..+ ...
T Consensus 229 --------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~-~~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~ 293 (325)
T 2q7v_A 229 --------KTGEVSELATDGVFIFIGHVPNT----AFVKDT-VSLRDDGYVDVRDE--IYTNIPMLFAAGDVSDYIYRQL 293 (325)
T ss_dssp --------TTCCEEEEECSEEEECSCEEESC----GGGTTT-SCBCTTSCBCCBTT--TBCSSTTEEECSTTTCSSCCCH
T ss_pred --------CCCcEEEEEcCEEEEccCCCCCh----HHHhhh-cccCCCccEecCCC--CccCCCCEEEeecccCccHHHH
Confidence 13454689999999999999986 344444 66778899999997 779999999999998763 444
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCc
Q 011535 397 IATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
. .|+.+|+.+|.+|.++|.+.+
T Consensus 294 ~-~A~~~g~~aa~~i~~~l~~~~ 315 (325)
T 2q7v_A 294 A-TSVGAGTRAAMMTERQLAALE 315 (325)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHC-
T ss_pred H-HHHHHHHHHHHHHHHHHHHhh
Confidence 4 799999999999999998764
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=267.08 Aligned_cols=286 Identities=21% Similarity=0.275 Sum_probs=210.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCC--ChHHHHHHHHHHHhcCCeEEEeC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP--ETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~--~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+. +||.+.+. ..|.++ ...++..++.+.+.+.+++++..
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYM--LKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD 90 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred ccCEEEECccHHHHHHHHHHHHCC--CcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999998 999999998 77766531 114333 34678888888888888888874
Q ss_pred eEEce-------EEEecc-eeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 93 VTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 93 ~~v~~-------~~~~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.+... .+.+.+ ....||+||+|||+ .+..+++||.+. .+++... +. .. ....+++
T Consensus 91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~~~~~~~~~-~~---~~---------~~~~~~~ 156 (323)
T 3f8d_A 91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGV-KRRKLGVPGEQEFAGRGISYCS-VA---DA---------PLFKNRV 156 (323)
T ss_dssp CEEEEEEC--CEEEEESSSCEEEEEEEEECCCC-EECCCCCTTTTTTBTTTEESCH-HH---HG---------GGGTTCE
T ss_pred EEEEEEecCCEEEEEECCCCEEEcCEEEECcCC-CCccCCCCchhhhcCCceEEec-cC---CH---------hHcCCCE
Confidence 43321 234444 23569999999999 477778888763 4443211 11 00 1125789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
++|||+|++|+|+|..|.+ . ..+|+++.|++.+..
T Consensus 157 v~vvG~G~~~~e~a~~l~~--------------------~-g~~v~~~~~~~~~~~------------------------ 191 (323)
T 3f8d_A 157 VAVIGGGDSALEGAEILSS--------------------Y-STKVYLIHRRDTFKA------------------------ 191 (323)
T ss_dssp EEEECCSHHHHHHHHHHHH--------------------H-SSEEEEECSSSSCCS------------------------
T ss_pred EEEECCCHHHHHHHHHHHH--------------------h-CCeEEEEEeCCCCCc------------------------
Confidence 9999999999999999985 2 357999998865321
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
. + .+.+.+. ...||+++++..+.++. . ++++..+++.+.
T Consensus 192 ------~------~----~~~~~~~------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~--------- 230 (323)
T 3f8d_A 192 ------Q------P----IYVETVK------------KKPNVEFVLNSVVKEIK--G--DKVVKQVVVENL--------- 230 (323)
T ss_dssp ------C------H----HHHHHHH------------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEET---------
T ss_pred ------C------H----HHHHHHH------------hCCCcEEEeCCEEEEEe--c--cCceeEEEEEEC---------
Confidence 0 0 0111111 14599999999999997 4 466666766541
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---CcchhH
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGIIA 398 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~~~ 398 (483)
.+|+..++++|.||+|+|++|+. ++.+..++..+++|++.+|++ ++|+.|+|||+|||+.. +....
T Consensus 231 ----~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~g~~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~~~- 299 (323)
T 3f8d_A 231 ----KTGEIKELNVNGVFIEIGFDPPT----DFAKSNGIETDTNGYIKVDEW--MRTSVPGVFAAGDCTSAWLGFRQVI- 299 (323)
T ss_dssp ----TTCCEEEEECSEEEECCCEECCH----HHHHHTTCCBCTTSSBCCCTT--CBCSSTTEEECSTTBSTTTTCCCHH-
T ss_pred ----CCCceEEEEcCEEEEEECCCCCh----hHHhhcCeeecCCCcEecCCC--ceecCCCEEEcceecCCCCccccee-
Confidence 13555689999999999999985 355667888888999999987 78999999999999875 44555
Q ss_pred hhHHHHHHHHHHHHHHHhcCc
Q 011535 399 TNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.|+.+|..+|.+|.++|.+.+
T Consensus 300 ~A~~~g~~aa~~i~~~l~~~~ 320 (323)
T 3f8d_A 300 TAVAQGAVAATSAYRYVTEKK 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred ehhhHHHHHHHHHHHHHHHhh
Confidence 799999999999999998753
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=269.12 Aligned_cols=296 Identities=18% Similarity=0.240 Sum_probs=206.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec----CCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----LPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~----~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v 87 (483)
.++|+||||||||+++|..|++.+ ++|+|||+ ...++|.+.+. -.|.++ ...++...+.+.+...++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 85 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT 85 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999998 99999998 45566654321 113332 345677778888888899
Q ss_pred EEEeCeEEce-------EEEecceeeccCEEEEccCCCCCCCCCCCCCCC-CCeeecceeee--eecCCCCCCCCCCCCC
Q 011535 88 SFFGNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGEDL-IGVHSAREFVW--WYNGHPDGKNLSPDLK 157 (483)
Q Consensus 88 ~~~~~~~v~~-------~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~-~~v~~a~~~~~--~~~~~~~~~~~~~~~~ 157 (483)
+++.+..... .+.++.....||+||+|||+ .+..+++||.+. .+++....+.. +..... +..
T Consensus 86 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 157 (333)
T 1vdc_A 86 TIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA-VAKRLSFVGSGEVLGGFWNRGISACAVCDGAA-------PIF 157 (333)
T ss_dssp EEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE-EECCCCCBTCSSSSSCCBTTTEESCHHHHTTS-------GGG
T ss_pred EEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCC-CcCCCCCCCccccccccccCcEEEeccCccch-------hhc
Confidence 9988763221 23332234579999999998 466777888653 22221111110 011110 012
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~--------------------~-g~~V~lv~~~~~~~~--~----------------- 197 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTK--------------------Y-GSKVYIIHRRDAFRA--S----------------- 197 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCS--C-----------------
T ss_pred CCCeEEEECCChHHHHHHHHHHh--------------------c-CCeEEEEecCCcCCc--c-----------------
Confidence 57899999999999999999975 3 358999998865310 0
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCC--ceEEEEEeeeeee
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSGVHFEKTALK 315 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g--~v~~v~~~~~~l~ 315 (483)
+. +.+.+ . .+.||+++++..+.++. . +++ ++..+.+...
T Consensus 198 -----------------~~----~~~~~---~---------~~~gv~i~~~~~v~~i~--~-~~~~~~v~~v~~~~~--- 238 (333)
T 1vdc_A 198 -----------------KI----MQQRA---L---------SNPKIDVIWNSSVVEAY--G-DGERDVLGGLKVKNV--- 238 (333)
T ss_dssp -----------------HH----HHHHH---H---------TCTTEEEECSEEEEEEE--E-SSSSSSEEEEEEEET---
T ss_pred -----------------HH----HHHHH---H---------hCCCeeEecCCceEEEe--C-CCCccceeeEEEEec---
Confidence 00 01111 1 16799999999999997 4 232 6666766531
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG 395 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~ 395 (483)
.+|+..+++||.||+|+|++|+. ++.+ .++..+++|++.+|+++ ++|+.|+|||+|||+..+..
T Consensus 239 ----------~~g~~~~i~~D~vi~a~G~~p~~----~~~~-~~l~~~~~G~i~vd~~~-~~t~~~~vya~GD~~~~~~~ 302 (333)
T 1vdc_A 239 ----------VTGDVSDLKVSGLFFAIGHEPAT----KFLD-GGVELDSDGYVVTKPGT-TQTSVPGVFAAGDVQDKKYR 302 (333)
T ss_dssp ----------TTCCEEEEECSEEEECSCEEESC----GGGT-TSSCBCTTSCBCCCTTS-CBCSSTTEEECGGGGCSSCC
T ss_pred ----------CCCceEEEecCEEEEEeCCccch----HHhh-ccccccCCCCEEechhh-cccCCCCEEEeeeccCCCch
Confidence 13455689999999999999986 3433 46777888999999875 68999999999999876433
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 396 IIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
....|+.+|+.+|.+|.++|.+.+
T Consensus 303 ~~~~A~~~g~~aa~~i~~~l~~~~ 326 (333)
T 1vdc_A 303 QAITAAGTGCMAALDAEHYLQEIG 326 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHhHHHHHHHHHHHHHhcc
Confidence 334799999999999999998764
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=264.90 Aligned_cols=287 Identities=18% Similarity=0.230 Sum_probs=204.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCC--CChHHHHHHHHHHHhcCCeEEEeC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH--PETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~--~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
.++|+||||||||+++|..|++.+ ++|+|||+. .+||.+... ..|++ ....++...+.+.+.+.+++++..
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSG--FSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV 92 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence 478999999999999999999998 999999994 456544321 11322 234567777788888888998875
Q ss_pred eEEceE-------EEecceeeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 93 VTLGSS-------VSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 93 ~~v~~~-------~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.....+ +..+.....||+||+|||+ .++.+++||.+. .+++..... .. ....++++
T Consensus 93 ~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~-~~~~~~i~g~~~~~~~~~~~~~~~----~~---------~~~~~~~v 158 (319)
T 3cty_A 93 EVRSIKKTQGGFDIETNDDTYHAKYVIITTGT-THKHLGVKGESEYFGKGTSYCSTC----DG---------YLFKGKRV 158 (319)
T ss_dssp CEEEEEEETTEEEEEESSSEEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHHH----HG---------GGGBTSEE
T ss_pred eEEEEEEeCCEEEEEECCCEEEeCEEEECCCC-CcccCCCCChHHhCCceEEEEEec----ch---------hhcCCCeE
Confidence 443221 3332334569999999998 567777887642 233221110 00 01146899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ ...+|+++.|++.+.. .
T Consensus 159 ~viG~G~~g~e~a~~l~~---------------------~g~~V~~i~~~~~~~~--~---------------------- 193 (319)
T 3cty_A 159 VTIGGGNSGAIAAISMSE---------------------YVKNVTIIEYMPKYMC--E---------------------- 193 (319)
T ss_dssp EEECCSHHHHHHHHHHTT---------------------TBSEEEEECSSSSCCS--C----------------------
T ss_pred EEECCCHHHHHHHHHHHh---------------------hCCcEEEEEcCCccCC--C----------------------
Confidence 999999999999999985 3468999998764310 0
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
+ .+.+.+. +.||+++++..+.++. . +++++..+.+...
T Consensus 194 ------------~----~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~~---------- 231 (319)
T 3cty_A 194 ------------N----AYVQEIK-------------KRNIPYIMNAQVTEIV--G-DGKKVTGVKYKDR---------- 231 (319)
T ss_dssp ------------H----HHHHHHH-------------HTTCCEECSEEEEEEE--E-SSSSEEEEEEEET----------
T ss_pred ------------H----HHHHHHh-------------cCCcEEEcCCeEEEEe--c-CCceEEEEEEEEc----------
Confidence 0 0112222 5689999999999997 4 3455666666531
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHH
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLY 402 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~ 402 (483)
.+|+..++++|.||+|+|++|+. ++....|+.++++|++.+|++ ++|+.|+|||+|||+..+......|+.
T Consensus 232 ---~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~~A~~ 302 (319)
T 3cty_A 232 ---TTGEEKLIETDGVFIYVGLIPQT----SFLKDSGVKLDERGYIVVDSR--QRTSVPGVYAAGDVTSGNFAQIASAVG 302 (319)
T ss_dssp ---TTCCEEEECCSEEEECCCEEECC----GGGTTSCCCBCTTSCBCCCTT--CBCSSTTEEECSTTBTTCCCCHHHHHH
T ss_pred ---CCCceEEEecCEEEEeeCCccCh----HHHhhccccccCCccEeCCCC--CccCCCCEEEeecccCcchhhHHHHHH
Confidence 13444589999999999999986 455667888888899999987 779999999999998764334447999
Q ss_pred HHHHHHHHHHHHHhcC
Q 011535 403 CAEETVASISEDLEQG 418 (483)
Q Consensus 403 ~g~~~a~~I~~~l~~~ 418 (483)
+|+.+|.+|.++|.+.
T Consensus 303 ~g~~aa~~i~~~l~~~ 318 (319)
T 3cty_A 303 DGCKAALSLYSDSISK 318 (319)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999998753
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=262.00 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=204.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CC--CCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--AP--DHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p--~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
++|+||||||||+++|..|++.+ .+|+|||+. +||.+.. ++ .+ .+....++..++.+.+++.+++++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 58999999999999999999998 999999863 5655432 11 01 122345777788888888899999884
Q ss_pred EE-c----------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 94 TL-G----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 94 ~v-~----------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
.+ . ..+.++++ ...||+||+|||+ .+..+++||.+. .+++..... .. ....
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~----~~---------~~~~ 143 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA-KWRNMNVPGEDQYRTKGVTYCPHC----DG---------PLFK 143 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHHH----HG---------GGGB
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhcccceeEEeccC----cH---------hhcC
Confidence 43 1 12344444 3579999999998 466677888641 223321110 00 0125
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+. +. +
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~---------------------~g~~Vtlv~~~~~~~--~~-~---------------- 183 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEMK--AD-Q---------------- 183 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------TBSEEEEECSSSSCC--SC-H----------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------hCCEEEEEEeCcccC--cc-H----------------
Confidence 7899999999999999999985 346899999886531 11 0
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
.+.+.+. ...||+++++..+.++. . +++++..+++.+.
T Consensus 184 ---------------------~~~~~l~------------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~~------ 221 (310)
T 1fl2_A 184 ---------------------VLQDKLR------------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR------ 221 (310)
T ss_dssp ---------------------HHHHHHH------------TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEET------
T ss_pred ---------------------HHHHHHh------------hCCCeEEecCCceEEEE--c-CCCcEEEEEEEEC------
Confidence 0112221 03689999999999997 4 3567777776541
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+|+..++++|.||+|+|++|+. ++... .+..+++|++.+|++ ++|+.|+|||+|||+..+...+.
T Consensus 222 -------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~-~l~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~ 287 (310)
T 1fl2_A 222 -------VSGDIHNIELAGIFVQIGLLPNT----NWLEG-AVERNRMGEIIIDAK--CETNVKGVFAAGDCTTVPYKQII 287 (310)
T ss_dssp -------TTCCEEEEECSEEEECSCEEESC----GGGTT-TSCBCTTSCBCCCTT--CBCSSTTEEECSTTBSCSSCCHH
T ss_pred -------CCCcEEEEEcCEEEEeeCCccCc----hHHhc-cccccCCCcEEcCCC--CccCCCCEEEeecccCCcchhhh
Confidence 13555689999999999999976 24343 367788899999987 67999999999999886644334
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 011535 399 TNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~ 418 (483)
.|+.+|+.+|.+|.++|.+.
T Consensus 288 ~A~~~g~~aa~~i~~~l~~~ 307 (310)
T 1fl2_A 288 IATGEGAKASLSAFDYLIRT 307 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred hhHhhHHHHHHHHHHHHHHh
Confidence 79999999999999999864
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=263.06 Aligned_cols=285 Identities=18% Similarity=0.238 Sum_probs=202.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecc----cCCCC---CChHHHHHHHHHHHhcCCeEEEe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g----~~p~~---~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
++|+||||||||+++|..|++.+ . +|+|||+. .+||.+.+. ..|.+ ....++..++.+.+.+.+++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 78 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGG--VKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM 78 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC
T ss_pred ceEEEECccHHHHHHHHHHHHCC--CCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 58999999999999999999998 8 99999996 455554321 11332 34567778888888888999887
Q ss_pred CeEEce-------EEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCC
Q 011535 92 NVTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (483)
Q Consensus 92 ~~~v~~-------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (483)
...... .+.+.++ ...||+||+|||+ .++.+++||.+. ++++...... .. ...++
T Consensus 79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~----~~---------~~~~~ 144 (311)
T 2q0l_A 79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG-SPKRTGIKGESEYWGKGVSTCATCD----GF---------FYKNK 144 (311)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE-EECCCCCBTHHHHBTTTEESCHHHH----GG---------GGTTS
T ss_pred EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC-CCCCCCCCChhhccCCcEEEeecCC----hh---------hcCCC
Confidence 544322 2333333 3469999999998 567777887531 3343221111 00 11568
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||+|++|+|+|..|.+ . ..+|+++.|++.+. +..
T Consensus 145 ~v~VvG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~--~~~------------------- 182 (311)
T 2q0l_A 145 EVAVLGGGDTAVEEAIYLAN--------------------I-CKKVYLIHRRDGFR--CAP------------------- 182 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHT--------------------T-SSEEEEECSSSSCC--SCH-------------------
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEeeCCccC--CCH-------------------
Confidence 99999999999999999986 3 35899999886431 110
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+.+.+. .+.||+++++..+.++. . +++.+..+.+...
T Consensus 183 -------------------~~~~~l~------------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~~-------- 220 (311)
T 2q0l_A 183 -------------------ITLEHAK------------NNDKIEFLTPYVVEEIK--G-DASGVSSLSIKNT-------- 220 (311)
T ss_dssp -------------------HHHHHHH------------TCTTEEEETTEEEEEEE--E-ETTEEEEEEEEET--------
T ss_pred -------------------HHHHHHh------------hCCCeEEEeCCEEEEEE--C-CCCcEeEEEEEec--------
Confidence 0111221 14699999999999997 4 2355655665431
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC----cccCCCCeeeecCCCCCCcccCceeeeccCCCC-Ccc
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG----IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTG 395 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g----~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~ 395 (483)
.+|+..++++|.||+|+|++|+. ++....+ +..+++|++.+|++ ++|+.|+|||+|||+.+ +..
T Consensus 221 -----~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~g~~~~l~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~ 289 (311)
T 2q0l_A 221 -----ATNEKRELVVPGFFIFVGYDVNN----AVLKQEDNSMLCKCDEYGSIVVDFS--MKTNVQGLFAAGDIRIFAPKQ 289 (311)
T ss_dssp -----TTCCEEEEECSEEEECSCEEECC----GGGBCTTSCBSSCBCTTSCBCCCTT--CBCSSTTEEECSTTBTTCCCC
T ss_pred -----CCCceEEEecCEEEEEecCccCh----hhhhcccccceeEeccCCCEEeCCc--cccCCCCeEEcccccCcchHH
Confidence 13444589999999999999985 3445543 77888899999987 77999999999999876 444
Q ss_pred hhHhhHHHHHHHHHHHHHHHhc
Q 011535 396 IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.. .|+.||+.+|.+|.++|.+
T Consensus 290 ~~-~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 290 VV-CAASDGATAALSVISYLEH 310 (311)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHHhHHHHHHHHHHHHhh
Confidence 44 7999999999999999864
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=265.44 Aligned_cols=286 Identities=18% Similarity=0.223 Sum_probs=212.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-------CCCCC--ChHHHHHHHHHHHhcCCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~v~~ 89 (483)
.++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.+.. .|.++ ...++..++.+.+.+.++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQ--ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI 84 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 479999999999999999999998 99999999999888764211 24443 35678888888888889999
Q ss_pred EeCeEEce---------EEEecceeeccCEEEEccCCC--CCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCC
Q 011535 90 FGNVTLGS---------SVSLSELRQLYHVVVLAYGAE--SDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPD 155 (483)
Q Consensus 90 ~~~~~v~~---------~~~~~~~~~~yd~vvlAtG~~--~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~ 155 (483)
+.+..+.. .+.+.++...||+||+|||+. .+..+++||.+. ..++. .+. +. ..
T Consensus 85 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~--~~~-------~~----~~ 151 (332)
T 3lzw_A 85 CLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY--FVD-------DL----QK 151 (332)
T ss_dssp ECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES--SCS-------CG----GG
T ss_pred EccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE--ecC-------CH----HH
Confidence 88765532 344445556799999999983 466677888652 12221 111 10 01
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeE
Q 011535 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (483)
Q Consensus 156 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~ 235 (483)
+ .+++++|||+|.+|+|+|..|.+ ...+|+++.|++.+..
T Consensus 152 ~-~~~~v~vvG~g~~~~e~a~~l~~---------------------~~~~v~~~~~~~~~~~------------------ 191 (332)
T 3lzw_A 152 F-AGRRVAILGGGDSAVDWALMLEP---------------------IAKEVSIIHRRDKFRA------------------ 191 (332)
T ss_dssp G-BTCEEEEECSSHHHHHHHHHHTT---------------------TBSEEEEECSSSSCSS------------------
T ss_pred c-CCCEEEEECCCHhHHHHHHHHHh---------------------hCCeEEEEEecCcCCc------------------
Confidence 2 47899999999999999999985 3458999998865310
Q ss_pred EeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee
Q 011535 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~ 315 (483)
... ..+.+. ++||+++++..+.++. . ++.+..+.+.+.
T Consensus 192 ------------~~~----------~~~~l~-------------~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~--- 229 (332)
T 3lzw_A 192 ------------HEH----------SVENLH-------------ASKVNVLTPFVPAELI--G--EDKIEQLVLEEV--- 229 (332)
T ss_dssp ------------CHH----------HHHHHH-------------HSSCEEETTEEEEEEE--C--SSSCCEEEEEET---
T ss_pred ------------cHH----------HHHHHh-------------cCCeEEEeCceeeEEe--c--CCceEEEEEEec---
Confidence 000 011122 6799999999999997 4 333556666541
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC---C
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR---G 392 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~---g 392 (483)
.+++.+++++|.||+|+|++|+. ++.+..++.. ++|++.+|++ ++|+.|+|||+|||+. +
T Consensus 230 ----------~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~~~~~-~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~ 292 (332)
T 3lzw_A 230 ----------KGDRKEILEIDDLIVNYGFVSSL----GPIKNWGLDI-EKNSIVVKST--METNIEGFFAAGDICTYEGK 292 (332)
T ss_dssp ----------TSCCEEEEECSEEEECCCEECCC----GGGGGSSCCE-ETTEEECCTT--SBCSSTTEEECGGGEECTTC
T ss_pred ----------CCCceEEEECCEEEEeeccCCCc----hHHhhcCccc-cCCeEEeCCC--CceecCCEEEccceecCCCC
Confidence 14556789999999999999976 4566677777 6899999987 7899999999999983 4
Q ss_pred CcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 393 PTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 393 ~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
+.... .|+.+|..+|.+|.+++.+..
T Consensus 293 ~~~~~-~A~~~g~~aa~~i~~~l~~~~ 318 (332)
T 3lzw_A 293 VNLIA-SGFGEAPTAVNNAKAYMDPKA 318 (332)
T ss_dssp CCCHH-HHHHHHHHHHHHHHHHHCTTS
T ss_pred cceEe-eehhhHHHHHHHHHHhhChhh
Confidence 44454 799999999999999998753
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=268.76 Aligned_cols=291 Identities=20% Similarity=0.209 Sum_probs=207.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCC---ChHHHHHHHHHHHhcCCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~---~~~~~~~~~~~~~~~~~v~~ 89 (483)
...++|+||||||||+++|..|++.+ ++|+|||+. .+||.+.+. ..|.++ ...++..++.+.+.+.++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQ--LAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADL 88 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTT--CCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 45689999999999999999999998 999999975 566654331 113332 34577778888888889999
Q ss_pred EeCeEEceE------E-Eecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 90 FGNVTLGSS------V-SLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 90 ~~~~~v~~~------~-~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
+.+.....+ + .+.++ ...||+||+|||+ .+..+++||.+. .++++......+ +..
T Consensus 89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~-~~~~~~i~g~~~~~~~~~~~~~~~~~~-------------~~~ 154 (335)
T 2a87_A 89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGA-AARYLQVPGEQELLGRGVSSCATCDGF-------------FFR 154 (335)
T ss_dssp ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCE-EECCCCCTHHHHTBTTTEESCHHHHGG-------------GGT
T ss_pred EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCC-CccCCCCCchHhccCCceEEeeccchh-------------hcC
Confidence 888744322 3 33333 3469999999998 566677887531 233322111110 125
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEec
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~ 238 (483)
+++|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~--------------------~-g~~V~l~~~~~~~~~--~------------------ 193 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTR--------------------F-ARSVTLVHRRDEFRA--S------------------ 193 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTT--------------------T-CSEEEEECSSSSCSS--C------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------------------h-CCeEEEEEcCCcCCc--c------------------
Confidence 7899999999999999999985 3 468999998865321 0
Q ss_pred cccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCC
Q 011535 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (483)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~ 318 (483)
..+.. +.+. +.||+++++..+.++. . ++.+..+.+...
T Consensus 194 ----------------~~~~~---~~~~-------------~~gV~v~~~~~v~~i~--~--~~~~~~v~~~~~------ 231 (335)
T 2a87_A 194 ----------------KIMLD---RARN-------------NDKIRFLTNHTVVAVD--G--DTTVTGLRVRDT------ 231 (335)
T ss_dssp ----------------TTHHH---HHHH-------------CTTEEEECSEEEEEEE--C--SSSCCEEEEEEE------
T ss_pred ----------------HHHHH---HHhc-------------cCCcEEEeCceeEEEe--c--CCcEeEEEEEEc------
Confidence 00000 1111 6799999999999997 4 445555666531
Q ss_pred CCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC-cchh
Q 011535 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-TGII 397 (483)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-~~~~ 397 (483)
.+|+..+++||.||+|+|++|++ ++.. .++..+++|++.+|+++ ++|+.|+|||+|||+..+ ....
T Consensus 232 -------~~g~~~~i~~D~vi~a~G~~p~~----~~~~-~~l~~~~~G~i~vd~~~-~~t~~~~iya~GD~~~~~~~~~~ 298 (335)
T 2a87_A 232 -------NTGAETTLPVTGVFVAIGHEPRS----GLVR-EAIDVDPDGYVLVQGRT-TSTSLPGVFAAGDLVDRTYRQAV 298 (335)
T ss_dssp -------TTSCCEEECCSCEEECSCEEECC----TTTB-TTBCBCTTSCBCCSTTS-SBCSSTTEEECGGGTCCSCCCHH
T ss_pred -------CCCceEEeecCEEEEccCCccCh----hHhh-cccccCCCccEEeCCCC-CccCCCCEEEeeecCCccHHHHH
Confidence 13444689999999999999986 2333 46778888999999865 789999999999998754 3444
Q ss_pred HhhHHHHHHHHHHHHHHHhcCcCC
Q 011535 398 ATNLYCAEETVASISEDLEQGVLA 421 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~~~~~~ 421 (483)
.|+.+|+.+|.+|.++|.+.+..
T Consensus 299 -~A~~~g~~aA~~i~~~l~~~~~~ 321 (335)
T 2a87_A 299 -TAAGSGCAAAIDAERWLAEHAAT 321 (335)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHhHHHHHHHHHHHhhcCcCc
Confidence 79999999999999999876543
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.10 Aligned_cols=297 Identities=19% Similarity=0.222 Sum_probs=208.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-------CCCCC--ChHHHHHHHHHHHhcCCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~v~ 88 (483)
..++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.... .|.++ ...++..++.+.+...+++
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPV 81 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCE
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 3579999999999999999999998 99999999988887653211 12222 3456777788888888888
Q ss_pred EEeCeEEce--------EEEecce-eeccCEEEEccCCC--CCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCC
Q 011535 89 FFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 89 ~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~--~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
++.+..+.. .+.+.++ ...||+||+|||+. .+..++++|.+. +....+...+... .+.
T Consensus 82 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~---~~~~~~~~~~~~~-------~~~- 150 (335)
T 2zbw_A 82 YSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGERE---FEGRGVYYAVKSK-------AEF- 150 (335)
T ss_dssp EEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTT---TBTTTEESSCSCG-------GGG-
T ss_pred EEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhh---ccCcEEEEecCch-------hhc-
Confidence 887755422 2333333 35699999999984 366667887642 1111111111100 012
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+..
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~---------------------~g~~V~~v~~~~~~~~-------------------- 189 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLD---------------------TARRITLIHRRPQFRA-------------------- 189 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTT---------------------TSSEEEEECSSSSCCS--------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEcCCccCc--------------------
Confidence 57899999999999999999985 3458999999865321
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
. +...+++.+.+. +.||+++++..+.++. . ++++..+.+...
T Consensus 190 ---------~-------~~~~~~l~~~l~-------------~~gv~v~~~~~v~~i~--~--~~~~~~v~~~~~----- 231 (335)
T 2zbw_A 190 ---------H-------EASVKELMKAHE-------------EGRLEVLTPYELRRVE--G--DERVRWAVVFHN----- 231 (335)
T ss_dssp ---------C-------HHHHHHHHHHHH-------------TTSSEEETTEEEEEEE--E--SSSEEEEEEEET-----
T ss_pred ---------c-------HHHHHHHHhccc-------------cCCeEEecCCcceeEc--c--CCCeeEEEEEEC-----
Confidence 0 011122222332 6799999999999997 4 466666666431
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--cc
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--TG 395 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~--~~ 395 (483)
.+|+..++++|.||+|+|++|+. ++.+..++..+ +|++.+|++ ++|+.|+|||+|||+..+ ..
T Consensus 232 --------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~~~~~~-~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~ 296 (335)
T 2zbw_A 232 --------QTQEELALEVDAVLILAGYITKL----GPLANWGLALE-KNKIKVDTT--MATSIPGVYACGDIVTYPGKLP 296 (335)
T ss_dssp --------TTCCEEEEECSEEEECCCEEEEC----GGGGGSCCCEE-TTEEECCTT--CBCSSTTEEECSTTEECTTCCC
T ss_pred --------CCCceEEEecCEEEEeecCCCCc----hHhhhcceecc-CCeeeeCCC--CCCCCCCEEEeccccccCcchh
Confidence 13444689999999999999976 35566677766 689999987 779999999999998532 23
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcCcCC
Q 011535 396 IIATNLYCAEETVASISEDLEQGVLA 421 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~~~~ 421 (483)
....|+.+|..+|.+|..+|.+....
T Consensus 297 ~~~~A~~~g~~aa~~i~~~l~~~~~~ 322 (335)
T 2zbw_A 297 LIVLGFGEAAIAANHAAAYANPALKV 322 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence 44479999999999999999876443
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=264.92 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=204.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCC---CChHHHHHHHHHHHhcCCeEEEe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~---~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
.++|+||||||||+++|..|++.+ ++|+|||+. .+||.+.+. ..|.+ ....++..++.+.+...+++++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999999999999998 999999975 566654331 11333 23457777788888888999988
Q ss_pred CeEEceE-----EE-ecc-eeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 92 NVTLGSS-----VS-LSE-LRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 92 ~~~v~~~-----~~-~~~-~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
+.....+ +. ..+ ....||+||+|||+ .+..+++||.+ ..++++......+ +..+++
T Consensus 82 ~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~ 147 (320)
T 1trb_A 82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACATSDGF-------------FYRNQK 147 (320)
T ss_dssp CCEEEEECSSSSEEEEESSCEEEEEEEEECCCE-EECCCCCHHHHHTBTTTEESCHHHHGG-------------GGTTSE
T ss_pred eeeeEEEecCCEEEEEeCCCEEEcCEEEECCCC-CcCCCCCCChHHhCCceeEecccCCcc-------------ccCCCe
Confidence 8744322 11 222 23469999999998 46666777743 1233322111100 125789
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 148 v~ViG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~~--~--------------------- 183 (320)
T 1trb_A 148 VAVIGGGNTAVEEALYLSN--------------------I-ASEVHLIHRRDGFRA--E--------------------- 183 (320)
T ss_dssp EEEECSSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCC--C---------------------
T ss_pred EEEECCCHHHHHHHHHHHh--------------------c-CCeEEEEEeCCcccc--C---------------------
Confidence 9999999999999999985 3 458999998864310 0
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
+.+.+++.+.+. +.||++++++.+.++. . +++++.++++.+.
T Consensus 184 -------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~~--------- 225 (320)
T 1trb_A 184 -------------KILIKRLMDKVE-------------NGNIILHTNRTLEEVT--G-DQMGVTGVRLRDT--------- 225 (320)
T ss_dssp -------------HHHHHHHHHHHH-------------TSSEEEECSCEEEEEE--E-CSSSEEEEEEECC---------
T ss_pred -------------HHHHHHHHHhcc-------------cCCeEEEcCceeEEEE--c-CCCceEEEEEEec---------
Confidence 111222223332 6799999999999997 4 3456766766531
Q ss_pred eeeccC-CceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC---CCCcccCceeeeccCCCCCcchh
Q 011535 322 QYAVGT-GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGPTGII 397 (483)
Q Consensus 322 ~~~~~~-g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~---~~~t~~p~vya~Gd~~~g~~~~~ 397 (483)
.+ |+..+++||.||+|+|++|++ ++.. .++..+ +|++.+++.+ .++|+.|+|||+|||+..+....
T Consensus 226 ----~~~g~~~~i~~D~vv~a~G~~p~~----~~~~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~ 295 (320)
T 1trb_A 226 ----QNSDNIESLDVAGLFVAIGHSPNT----AIFE-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQA 295 (320)
T ss_dssp ----TTCCCCEEEECSEEEECSCEEESC----GGGT-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCH
T ss_pred ----cCCCceEEEEcCEEEEEeCCCCCh----HHhc-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhh
Confidence 02 444689999999999999986 2433 456777 8999999862 13799999999999987643333
Q ss_pred HhhHHHHHHHHHHHHHHHhcC
Q 011535 398 ATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 398 ~~a~~~g~~~a~~I~~~l~~~ 418 (483)
..|+.+|..+|.+|.++|.+.
T Consensus 296 ~~A~~~g~~aa~~i~~~l~~~ 316 (320)
T 1trb_A 296 ITSAGTGCMAALDAERYLDGL 316 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhccHHHHHHHHHHHHHhc
Confidence 379999999999999999764
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=263.22 Aligned_cols=291 Identities=21% Similarity=0.223 Sum_probs=206.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------ccCCCCC--ChHHHHHHHHHHHhcCCe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--------GVAPDHP--ETKIVINQFSRVVQHERC 87 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--------g~~p~~~--~~~~~~~~~~~~~~~~~v 87 (483)
..++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.. .. |.++ ...++...+.+.+...++
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 89 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNN--ISCRIIESMPQLGGQLAALYPEKHIYDV-AGFPEVPAIDLVESLWAQAERYNP 89 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTCTTSEECCS-TTCSSEEHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCCcccccCCCcccccC-CCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3579999999999999999999998 999999999888876531 11 3332 346777788888888889
Q ss_pred EEEeCeEEce---------EEEecce-eeccCEEEEccCCC--CCCCCCCCC-CC-CC--CeeecceeeeeecCCCCCCC
Q 011535 88 SFFGNVTLGS---------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPG-ED-LI--GVHSAREFVWWYNGHPDGKN 151 (483)
Q Consensus 88 ~~~~~~~v~~---------~~~~~~~-~~~yd~vvlAtG~~--~~~~~~ipg-~~-~~--~v~~a~~~~~~~~~~~~~~~ 151 (483)
+++.+..+.. .+.+.++ ...||+||+|||+. .+..+++|| .+ .. +++.. +...
T Consensus 90 ~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~------~~~~----- 158 (360)
T 3ab1_A 90 DVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA------VKSV----- 158 (360)
T ss_dssp EEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS------CSCG-----
T ss_pred EEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe------cCCH-----
Confidence 9887755421 2333333 34699999999984 355567777 43 22 12211 1100
Q ss_pred CCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCC
Q 011535 152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK 231 (483)
Q Consensus 152 ~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~ 231 (483)
.+. .+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+...
T Consensus 159 --~~~-~~~~vvVvG~G~~g~e~A~~l~~---------------------~g~~V~lv~~~~~~~~~------------- 201 (360)
T 3ab1_A 159 --EDF-KGKRVVIVGGGDSALDWTVGLIK---------------------NAASVTLVHRGHEFQGH------------- 201 (360)
T ss_dssp --GGG-TTCEEEEECSSHHHHHHHHHTTT---------------------TSSEEEEECSSSSCSSC-------------
T ss_pred --HHc-CCCcEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEEcCCCCCCC-------------
Confidence 012 57899999999999999999985 24689999998653210
Q ss_pred CeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEee
Q 011535 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (483)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~ 311 (483)
+....++.+.+. +.||+++++..+.++. . +++++..+.+..
T Consensus 202 -----------------------~~~~~~l~~~~~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~ 242 (360)
T 3ab1_A 202 -----------------------GKTAHEVERARA-------------NGTIDVYLETEVASIE--E-SNGVLTRVHLRS 242 (360)
T ss_dssp -----------------------SHHHHSSHHHHH-------------HTSEEEESSEEEEEEE--E-ETTEEEEEEEEE
T ss_pred -----------------------HHHHHHHHHHhh-------------cCceEEEcCcCHHHhc--c-CCCceEEEEEEe
Confidence 011111112221 5689999999999997 4 356666666541
Q ss_pred eeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC
Q 011535 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (483)
Q Consensus 312 ~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~ 391 (483)
.+|+..++++|.||+|+|++|+. ++.+..++..+ +|++.+|++ ++|+.|+|||+|||+.
T Consensus 243 --------------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~~~~~~-~g~i~vd~~--~~t~~~~vya~GD~~~ 301 (360)
T 3ab1_A 243 --------------SDGSKWTVEADRLLILIGFKSNL----GPLARWDLELY-ENALVVDSH--MKTSVDGLYAAGDIAY 301 (360)
T ss_dssp --------------TTCCEEEEECSEEEECCCBCCSC----GGGGGSSCCEE-TTEEECCTT--SBCSSTTEEECSTTEE
T ss_pred --------------cCCCeEEEeCCEEEECCCCCCCH----HHHHhhccccc-cCeeeecCC--CcCCCCCEEEecCccC
Confidence 13444689999999999999976 35556677766 789999986 7799999999999985
Q ss_pred CC--cchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 392 GP--TGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 392 g~--~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.+ ......|+.+|..+|.+|..++.+.+
T Consensus 302 ~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 331 (360)
T 3ab1_A 302 YPGKLKIIQTGLSEATMAVRHSLSYIKPGE 331 (360)
T ss_dssp CTTCCCSHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CCCccceeehhHHHHHHHHHHHHhhcCCcc
Confidence 32 23344799999999999999997654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=273.91 Aligned_cols=288 Identities=14% Similarity=0.169 Sum_probs=195.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC----CceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g----gl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++|+|||||+||++||..|++.+++.+|+|||+++.++ ++..+ .........++.....+.+.+.+++++.+..+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V 81 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAY-FNHTINELHEARYITEEELRRQKIQLLLNREV 81 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC-----------------CCCCHHHHHHTTEEEECSCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhh-hcCCCCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 69999999999999999999995559999999998765 22111 10111112222222344556678998887765
Q ss_pred ce------EEEe----cceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEE
Q 011535 96 GS------SVSL----SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (483)
Q Consensus 96 ~~------~~~~----~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 165 (483)
.. .+.+ ......||+||||||+ .|..+++||.+.+++++...+.....- .. ....+++++||
T Consensus 82 ~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~~----~~---~~~~~~~vvVi 153 (452)
T 3oc4_A 82 VAMDVENQLIAWTRKEEQQWYSYDKLILATGA-SQFSTQIRGSQTEKLLKYKFLSGALAA----VP---LLENSQTVAVI 153 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEECSEEEECCCC-CBCCCCCBTTTCTTEEEGGGCC----C----CH---HHHTCSEEEEE
T ss_pred EEEECCCCEEEEEecCceEEEEcCEEEECCCc-ccCCCCCCCCCCCCEEEeCCHHHHHHH----HH---HHhcCCEEEEE
Confidence 32 2322 1223469999999999 678888999888888876654321110 00 01246899999
Q ss_pred cCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCC
Q 011535 166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (483)
Q Consensus 166 G~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~ 245 (483)
|+|++|+|+|..|.+ .+ .+|+++.|.+.+...+...
T Consensus 154 GgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~d~----------------------- 189 (452)
T 3oc4_A 154 GAGPIGMEAIDFLVK--------------------MK-KTVHVFESLENLLPKYFDK----------------------- 189 (452)
T ss_dssp CCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTCCH-----------------------
T ss_pred CCCHHHHHHHHHHHh--------------------CC-CeEEEEEccCccccccCCH-----------------------
Confidence 999999999999986 34 5899999987654321111
Q ss_pred CCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeec
Q 011535 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (483)
Q Consensus 246 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~ 325 (483)
...+.+.+.+. ++||+++++..+.++. . +++.+ .+.+
T Consensus 190 ----------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v-~v~~---------------- 226 (452)
T 3oc4_A 190 ----------EMVAEVQKSLE-------------KQAVIFHFEETVLGIE--E-TANGI-VLET---------------- 226 (452)
T ss_dssp ----------HHHHHHHHHHH-------------TTTEEEEETCCEEEEE--E-CSSCE-EEEE----------------
T ss_pred ----------HHHHHHHHHHH-------------HcCCEEEeCCEEEEEE--c-cCCeE-EEEE----------------
Confidence 11122223332 7899999999999997 3 34544 3332
Q ss_pred cCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------ch
Q 011535 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GI 396 (483)
Q Consensus 326 ~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---------~~ 396 (483)
.+. +++||.||+|+|++|+. ++.+.. +.++++|++.+|++ ++|+.|+|||+|||+..+. ..
T Consensus 227 -~~g--~i~aD~Vv~A~G~~p~~----~~l~~~-~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~ 296 (452)
T 3oc4_A 227 -SEQ--EISCDSGIFALNLHPQL----AYLDKK-IQRNLDQTIAVDAY--LQTSVPNVFAIGDCISVMNEPVAETFYAPL 296 (452)
T ss_dssp -SSC--EEEESEEEECSCCBCCC----SSCCTT-SCBCTTSCBCCCTT--CBCSSTTEEECGGGBCEEEGGGTEEECCCC
T ss_pred -CCC--EEEeCEEEECcCCCCCh----HHHHhh-hccCCCCCEEECcC--ccCCCCCEEEEEeeEEeccccCCceeecch
Confidence 112 79999999999999987 233333 77888999999987 7899999999999986531 23
Q ss_pred hHhhHHHHHHHHHHHHH
Q 011535 397 IATNLYCAEETVASISE 413 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~ 413 (483)
...|..||+.+|.+|+.
T Consensus 297 ~~~A~~~g~~aa~~i~g 313 (452)
T 3oc4_A 297 VNNAVRTGLVVANNLEE 313 (452)
T ss_dssp HHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44799999999998864
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=280.05 Aligned_cols=281 Identities=15% Similarity=0.212 Sum_probs=187.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCC-ChH-HHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHP-ETK-IVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~-~~~-~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+||+||||||||++||..|++.+++.+|+|||+++..++. +.+.+ .... ... .+.....+++++.+++++.+..
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVI-GEVVEDRRYALAYTPEKFYDRKQITVKTYHE 79 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHH-TTSSCCGGGTBCCCHHHHHHHHCCEEEETEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHH-cCCccchhhhhhcCHHHHHHhcCCEEEeCCe
Confidence 4799999999999999999999878899999998764321 11100 0100 000 0111123344556888888765
Q ss_pred Ece------EEEecc------eeeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCC
Q 011535 95 LGS------SVSLSE------LRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (483)
Q Consensus 95 v~~------~~~~~~------~~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (483)
+.. .+.+.. ....||+||||||+ .|+.++++|.. ..++.++..+..++. ...+
T Consensus 80 V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs-~p~~p~i~g~~~~~~~~~~~~~~l~~~~~-----------~~~~ 147 (437)
T 4eqs_A 80 VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA-SANSLGFESDITFTLRNLEDTDAIDQFIK-----------ANQV 147 (437)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE-EECCCCCCCTTEECCSSHHHHHHHHHHHH-----------HHTC
T ss_pred EEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC-ccccccccCceEEeeccHHHHHHHHHhhh-----------ccCC
Confidence 521 122211 12469999999999 57777787743 111111111111111 0136
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~ 239 (483)
++++|||+|++|+|+|..+.+ .+ .+|+++.|.+.+...+.
T Consensus 148 ~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~ll~~~d------------------- 187 (437)
T 4eqs_A 148 DKVLVVGAGYVSLEVLENLYE--------------------RG-LHPTLIHRSDKINKLMD------------------- 187 (437)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEEESSSCCSTTSC-------------------
T ss_pred cEEEEECCccchhhhHHHHHh--------------------cC-Ccceeeeeecccccccc-------------------
Confidence 799999999999999999986 33 57999999876543222
Q ss_pred ccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCC
Q 011535 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (483)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~ 319 (483)
+...+.+.+.+. ++||+++++..+.++. + . .+.+.
T Consensus 188 ---------------~~~~~~~~~~l~-------------~~gV~i~~~~~v~~~~--~---~---~v~~~--------- 222 (437)
T 4eqs_A 188 ---------------ADMNQPILDELD-------------KREIPYRLNEEINAIN--G---N---EITFK--------- 222 (437)
T ss_dssp ---------------GGGGHHHHHHHH-------------HTTCCEEESCCEEEEE--T---T---EEEET---------
T ss_pred ---------------chhHHHHHHHhh-------------ccceEEEeccEEEEec--C---C---eeeec---------
Confidence 111122223333 6789999999888886 3 2 22221
Q ss_pred CceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc----
Q 011535 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG---- 395 (483)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~---- 395 (483)
++ ++++||.||+|+|++|+. .+.+..|+..+++|+|.+|++ ++|++|+|||+|||+..+..
T Consensus 223 -------~g--~~~~~D~vl~a~G~~Pn~----~~~~~~gl~~~~~G~I~vd~~--~~Ts~p~IyA~GDva~~~~~~~~~ 287 (437)
T 4eqs_A 223 -------SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDRKGFIPVNDK--FETNVPNIYAIGDIATSHYRHVDL 287 (437)
T ss_dssp -------TS--CEEECSEEEECCCEEESC----GGGTTSSCCCCTTSCEECCTT--CBCSSTTEEECGGGEEEEBSSSSS
T ss_pred -------CC--eEEeeeeEEEEeceecCc----HHHHhhhhhhccCCcEecCCC--ccCCCCCEEEEEEccCcccccCCc
Confidence 22 479999999999999986 466788999999999999998 78999999999999854321
Q ss_pred -----hhHhhHHHHHHHHHHHHH
Q 011535 396 -----IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 -----~~~~a~~~g~~~a~~I~~ 413 (483)
....|.+||+.+|+||+.
T Consensus 288 ~~~~~~a~~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 288 PASVPLAWGAHRAASIVAEQIAG 310 (437)
T ss_dssp EECCCSHHHHHHHHHHHHHHHHS
T ss_pred cccchhHHHHHHHHHHHHHHHcC
Confidence 233689999999999864
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-32 Score=275.80 Aligned_cols=292 Identities=18% Similarity=0.163 Sum_probs=203.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
..++|+|||||+||++||..|++.+++.+|+|||+.+.++.. +......+.....++.....+++...+++++.++.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 87 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE 87 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence 457999999999999999999999955569999999865321 11112233223333333344556677899999855
Q ss_pred Ec------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCC-CCeEEEEc
Q 011535 95 LG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS-TDTAVILG 166 (483)
Q Consensus 95 v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~vvVIG 166 (483)
+. +.+.+.++. ..||+||+|||+ .++.+++||.+.++++............ ..+.. +++++|||
T Consensus 88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~v~~~~~~~d~~~l~-------~~~~~~~~~vvViG 159 (415)
T 3lxd_A 88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGG-DPRRLSCVGADLAGVHAVRTKEDADRLM-------AELDAGAKNAVVIG 159 (415)
T ss_dssp EEEEETTTTEEEETTSCEEEEEEEEECCCE-ECCCCBTTSSCCBTEECCCSHHHHHHHH-------HHHHTTCCEEEEEC
T ss_pred EEEEECCCCEEEECCCCEEEeeEEEEccCC-ccCCCCCCCccccCEEEEcCHHHHHHHH-------HHhhhcCCeEEEEC
Confidence 42 245555543 479999999998 6888889998877777543322110000 00113 78999999
Q ss_pred CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCC
Q 011535 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP 246 (483)
Q Consensus 167 ~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~ 246 (483)
+|++|+|+|..|.+ .+ .+|+++.+.+.+.......+
T Consensus 160 gG~~g~e~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~~~~~----------------------- 195 (415)
T 3lxd_A 160 GGYIGLEAAAVLTK--------------------FG-VNVTLLEALPRVLARVAGEA----------------------- 195 (415)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSCHH-----------------------
T ss_pred CCHHHHHHHHHHHh--------------------cC-CeEEEEecCCchhhhhcCHH-----------------------
Confidence 99999999999986 34 57999999876532211111
Q ss_pred CcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeecc
Q 011535 247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG 326 (483)
Q Consensus 247 ~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~ 326 (483)
....+.+.+. ++||+++++..+.++. . +++++..+++.+
T Consensus 196 ----------~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~~v~l~d--------------- 234 (415)
T 3lxd_A 196 ----------LSEFYQAEHR-------------AHGVDLRTGAAMDCIE--G-DGTKVTGVRMQD--------------- 234 (415)
T ss_dssp ----------HHHHHHHHHH-------------HTTCEEEETCCEEEEE--E-SSSBEEEEEESS---------------
T ss_pred ----------HHHHHHHHHH-------------hCCCEEEECCEEEEEE--e-cCCcEEEEEeCC---------------
Confidence 1112222332 6799999999999997 4 456666665532
Q ss_pred CCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc----c------h
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT----G------I 396 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~----~------~ 396 (483)
| ++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+. | .
T Consensus 235 -G--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~ 303 (415)
T 3lxd_A 235 -G--SVIPADIVIVGIGIVPCV----GALISAGASGG-NG-VDVDEF--CRTSLTDVYAIGDCAAHANDFADGAVIRLES 303 (415)
T ss_dssp -S--CEEECSEEEECSCCEESC----HHHHHTTCCCS-SS-EECCTT--CBCSSTTEEECGGGEEEECGGGTTCEECCCS
T ss_pred -C--CEEEcCEEEECCCCccCh----HHHHhCCCCcC-CC-EEECCC--CCcCCCCEEEEEeeeeecCcccCCcceeech
Confidence 2 379999999999999986 35566677776 56 888887 7899999999999987554 2 1
Q ss_pred hHhhHHHHHHHHHHHHH
Q 011535 397 IATNLYCAEETVASISE 413 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~ 413 (483)
+..|..||+.+|.+|+.
T Consensus 304 ~~~A~~qg~~aa~~i~g 320 (415)
T 3lxd_A 304 VQNANDMATAAAKDICG 320 (415)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34799999999999974
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-33 Score=292.05 Aligned_cols=321 Identities=16% Similarity=0.150 Sum_probs=197.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHH--hcCCeEEEeC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVV--QHERCSFFGN 92 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~--~~~~v~~~~~ 92 (483)
...+++|||||||+||+++|..|.+.+ ++|+|||+++++ +-.+.|.++.+..+..++...+...+ ...+++|+.+
T Consensus 39 ~~~KprVVIIGgG~AGl~~A~~L~~~~--~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~ 116 (502)
T 4g6h_A 39 HSDKPNVLILGSGWGAISFLKHIDTKK--YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA 116 (502)
T ss_dssp SCSSCEEEEECSSHHHHHHHHHSCTTT--CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE
T ss_pred CCCCCCEEEECCcHHHHHHHHHhhhCC--CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE
Confidence 345689999999999999999999887 999999999763 33344555444444444433344443 3457888877
Q ss_pred eEEce-----EEEec---------------------ceeeccCEEEEccCCCCCCCCCCCCCC-----CCCeeecceeee
Q 011535 93 VTLGS-----SVSLS---------------------ELRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVW 141 (483)
Q Consensus 93 ~~v~~-----~~~~~---------------------~~~~~yd~vvlAtG~~~~~~~~ipg~~-----~~~v~~a~~~~~ 141 (483)
..... .+++. .....||+||||||+ .++.+++||.+ +..+.++..+..
T Consensus 117 ~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs-~~~~~~ipG~~e~a~~l~t~~dA~~ir~ 195 (502)
T 4g6h_A 117 EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA-EPNTFGIPGVTDYGHFLKEIPNSLEIRR 195 (502)
T ss_dssp EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC-EECCTTCTTHHHHCEECSSHHHHHHHHH
T ss_pred EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc-ccccCCccCcccccCCCCCHHHHHHHHH
Confidence 65432 23221 122469999999999 57788999954 233333332222
Q ss_pred eecCCCCCCCC----CCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 142 WYNGHPDGKNL----SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 142 ~~~~~~~~~~~----~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
.+....+.... ++......+++|||+|++|+|+|.+|.... ..++.. .+..+. ...+|+++.+.+.+..
T Consensus 196 ~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~----~~~l~~-~~~~~~--~~~~V~lve~~~~il~ 268 (502)
T 4g6h_A 196 TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYV----HQDLRK-FLPALA--EEVQIHLVEALPIVLN 268 (502)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHH----HHTHHH-HCHHHH--HHCEEEEECSSSSSST
T ss_pred HHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHH----HHHHHh-hccccc--ccceeEEecccccccc
Confidence 11100000000 000012358999999999999999987410 000000 000010 1247999988876654
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.|. +.+.....+.|. ++||++++++.+.++.
T Consensus 269 ~~~----------------------------------~~~~~~~~~~L~-------------~~GV~v~~~~~v~~v~-- 299 (502)
T 4g6h_A 269 MFE----------------------------------KKLSSYAQSHLE-------------NTSIKVHLRTAVAKVE-- 299 (502)
T ss_dssp TSC----------------------------------HHHHHHHHHHHH-------------HTTCEEETTEEEEEEC--
T ss_pred CCC----------------------------------HHHHHHHHHHHH-------------hcceeeecCceEEEEe--
Confidence 333 122223334443 6799999999999996
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. ++ +.+... . .+| ....++|++|+||||+|.+|+++.. .+....+...+.+|+|.||+++ +.
T Consensus 300 ~--~~----~~~~~~-~---~dg------~~~~~~i~ad~viwa~Gv~~~~~~~-~l~~~~~~~~~~~g~I~Vd~~l-q~ 361 (502)
T 4g6h_A 300 E--KQ----LLAKTK-H---EDG------KITEETIPYGTLIWATGNKARPVIT-DLFKKIPEQNSSKRGLAVNDFL-QV 361 (502)
T ss_dssp S--SE----EEEEEE-C---TTS------CEEEEEEECSEEEECCCEECCHHHH-HHHHHSGGGTTCCSSEEBCTTS-BB
T ss_pred C--Cc----eEEEEE-e---cCc------ccceeeeccCEEEEccCCcCCHHHH-hHHHhccccccCCCceeECCcc-cc
Confidence 2 32 222211 0 011 1123589999999999999986210 1223345666778999999985 44
Q ss_pred cccCceeeeccCCCC--CcchhHhhHHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRG--PTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 378 t~~p~vya~Gd~~~g--~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+++|+|||+|||+.. |.... .|++||..+|.||.+.
T Consensus 362 ~~~~~IfAiGD~a~~~~p~~a~-~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 362 KGSNNIFAIGDNAFAGLPPTAQ-VAHQEAEYLAKNFDKM 399 (502)
T ss_dssp TTCSSEEECGGGEESSSCCCHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcccCCCCCCchH-HHHHHHHHHHHHHHHH
Confidence 589999999999853 22333 6999999999999763
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=259.41 Aligned_cols=279 Identities=14% Similarity=0.196 Sum_probs=187.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC-----CChHHHHHHHHHHHhc-CCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQFSRVVQH-ERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~-----~~~~~~~~~~~~~~~~-~~v~~~ 90 (483)
++.++|+||||||||++||.+|++.+ .+|+|||+.. ++|.+.... |++ ....++.....+.+.+ .++.+.
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g--~~v~lie~~~-~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRAR--KQIALFDNNT-NRNRVTQNS-HGFITRDGIKPEEFKEIGLNEVMKYPSVHYY 79 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSC-CGGGGSSCB-CCSTTCTTBCHHHHHHHHHHHHTTSTTEEEE
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC-CCCeeeeec-CCccCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999999 9999999875 444432211 222 2345555554444444 456666
Q ss_pred eCeEEce--------EEEecce-eeccCEEEEccCCCCCCCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCC
Q 011535 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (483)
Q Consensus 91 ~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~ 158 (483)
....+.. .+.+.++ ...||+||||||+ .|+.|++||.+ ..++++......+ .. .
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs-~p~~p~i~G~~~~~~~~v~~~~~~~~~------------~~-~ 145 (304)
T 4fk1_A 80 EKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM-QEEFPSIPNVREYYGKSLFSCPYCDGW------------EL-K 145 (304)
T ss_dssp ECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC-EEECCSCTTHHHHBTTTEESCHHHHSG------------GG-T
T ss_pred eeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC-ccccccccCccccccceeeeccccchh------------Hh-c
Confidence 6655421 2333333 3469999999999 68888999965 2344433222110 11 4
Q ss_pred CCeEEEEcCCch-HHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 159 TDTAVILGQGNV-ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 159 ~~~vvVIG~G~~-g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
+++++|||||.. ++|+|..+.+ ...+|+++.|...+. .
T Consensus 146 ~~~~~VIggG~~~~~e~a~~~~~---------------------~~~~v~i~~~~~~~~----~---------------- 184 (304)
T 4fk1_A 146 DQPLIIISENEDHTLHMTKLVYN---------------------WSTDLVIATNGNELS----Q---------------- 184 (304)
T ss_dssp TSCEEEECCSHHHHHHHHHHHTT---------------------TCSCEEEECSSCCCC----H----------------
T ss_pred CCceeeecCCCchhhhHHHHHHh---------------------CCceEEEEeccccch----h----------------
Confidence 677888888876 5677776654 446788887765321 0
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
.+.+.|. ++++.++.. .+..+. . +++++..+++.
T Consensus 185 ----------------------~~~~~l~-------------~~g~~~~~~-~v~~~~--~-~~~~~~~v~~~------- 218 (304)
T 4fk1_A 185 ----------------------TIMDELS-------------NKNIPVITE-SIRTLQ--G-EGGYLKKVEFH------- 218 (304)
T ss_dssp ----------------------HHHHHHH-------------TTTCCEECS-CEEEEE--S-GGGCCCEEEET-------
T ss_pred ----------------------hhhhhhh-------------ccceeEeee-eEEEee--c-CCCeeeeeecc-------
Confidence 0112222 556776654 355665 4 35566555442
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcch
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTGI 396 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~~ 396 (483)
+++++++|.+|+++|.+|++ .+....|+.++++|+|.+|++ ++|++|||||+|||+. ++..+
T Consensus 219 -----------~g~~i~~~~~vi~~g~~~~~----~~~~~~g~~~~~~G~I~vd~~--~~Ts~p~IyA~GDv~~~~~~~~ 281 (304)
T 4fk1_A 219 -----------SGLRIERAGGFIVPTFFRPN----QFIEQLGCELQSNGTFVIDDF--GRTSEKNIYLAGETTTQGPSSL 281 (304)
T ss_dssp -----------TSCEECCCEEEECCEEECSS----CHHHHTTCCCCTTSSSCSSTT--CBCSSTTEEECSHHHHTSCCCH
T ss_pred -----------ccceeeecceeeeeccccCC----hhhhhcCeEECCCCCEEECcC--CccCCCCEEEEeccCCCcchHH
Confidence 22478899888888777654 255677899999999999998 8899999999999985 45556
Q ss_pred hHhhHHHHHHHHHHHHHHHhcC
Q 011535 397 IATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+ +|+.+|+.+|.+|.++|.++
T Consensus 282 ~-~A~~~G~~AA~~i~~~L~~e 302 (304)
T 4fk1_A 282 I-IAASQGNKAAIAINSDITDE 302 (304)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHhhc
Confidence 5 89999999999999999754
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-31 Score=274.14 Aligned_cols=291 Identities=17% Similarity=0.234 Sum_probs=204.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-cc------------------------CCCCC--
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GV------------------------APDHP-- 69 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~------------------------~p~~~-- 69 (483)
...++|+|||||+||+++|..|++.+ .+|+|||+++.+||...+ ++ .+...
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 118 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEK 118 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhh
Confidence 34589999999999999999999998 999999999877765321 11 11111
Q ss_pred --ChHHHHHHHH-------HHH-----hcCCeEEE-eCeEE---ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCC
Q 011535 70 --ETKIVINQFS-------RVV-----QHERCSFF-GNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131 (483)
Q Consensus 70 --~~~~~~~~~~-------~~~-----~~~~v~~~-~~~~v---~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~ 131 (483)
...++...+. ..+ ...+++++ .+... ...+.+......||+||+|||+ .+..+++||.+..
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~G~~~~ 197 (523)
T 1mo9_A 119 VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGA-GPGTLDVPGVNAK 197 (523)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCE-ECCCCCSTTTTSB
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcccC
Confidence 1334444332 444 66788887 44322 1234443334579999999998 5777889998777
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
+++++.++...+. .. .+++++|||+|.+|+|+|..|.+ .+ .+|+++.+
T Consensus 198 ~v~~~~~~~~~l~----------~~-~g~~vvViGgG~~g~E~A~~l~~--------------------~G-~~Vtlv~~ 245 (523)
T 1mo9_A 198 GVFDHATLVEELD----------YE-PGSTVVVVGGSKTAVEYGCFFNA--------------------TG-RRTVMLVR 245 (523)
T ss_dssp TEEEHHHHHHHCC----------SC-CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECS
T ss_pred cEeeHHHHHHHHH----------hc-CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEe
Confidence 7887766541111 01 34899999999999999999986 44 47999999
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
.+.+...+. +...+.+.+.+. +.||+++++..+
T Consensus 246 ~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~GV~i~~~~~V 278 (523)
T 1mo9_A 246 TEPLKLIKD----------------------------------NETRAYVLDRMK-------------EQGMEIISGSNV 278 (523)
T ss_dssp SCTTTTCCS----------------------------------HHHHHHHHHHHH-------------HTTCEEESSCEE
T ss_pred cCccccccc----------------------------------HHHHHHHHHHHH-------------hCCcEEEECCEE
Confidence 875432221 111222223332 679999999999
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCC-ccCCCCcccCCCCeeee
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP-FDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~-~~~~~g~~~~~~G~v~v 370 (483)
.++. .++++++.++.+.. .+|+ .+++||.||+|+|++|+. . +.+..|+.++++|+|.+
T Consensus 279 ~~i~--~~~~~~v~~~~v~~--------------~~G~-~~i~aD~Vv~A~G~~p~~----~~~l~~~gl~~~~~G~i~V 337 (523)
T 1mo9_A 279 TRIE--EDANGRVQAVVAMT--------------PNGE-MRIETDFVFLGLGEQPRS----AELAKILGLDLGPKGEVLV 337 (523)
T ss_dssp EEEE--ECTTSBEEEEEEEE--------------TTEE-EEEECSCEEECCCCEECC----HHHHHHHTCCBCTTSCBCC
T ss_pred EEEE--EcCCCceEEEEEEE--------------CCCc-EEEEcCEEEECcCCccCC----ccCHHHcCCccCCCCCEEE
Confidence 9997 31244443332221 1221 279999999999999986 3 44566888888999999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|++ ++|+.|+|||+|||+.++.... .|..||+.+|.+|..
T Consensus 338 d~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 338 NEY--LQTSVPNVYAVGDLIGGPMEMF-KARKSGCYAARNVMG 377 (523)
T ss_dssp CTT--SBCSSTTEEECGGGGCSSCSHH-HHHHHHHHHHHHHTT
T ss_pred CCC--CccCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 987 7899999999999987665554 799999999999974
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=252.90 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=196.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce--ecccCCC--CCChHHHHHHHHHHHhcC-CeEEEeCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--RSGVAPD--HPETKIVINQFSRVVQHE-RCSFFGNV 93 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~--~~g~~p~--~~~~~~~~~~~~~~~~~~-~v~~~~~~ 93 (483)
+++|+||||||||+++|..|++.+ ++|+|||+.+..+... .++. +. .....++..++.+.+.+. +++++.+.
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 78 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGERRNRFASHSHGF-LGQDGKAPGEIIAEARRQIERYPTIHWVEGR 78 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCCGGGGCSCCCSS-TTCTTCCHHHHHHHHHHHHTTCTTEEEEESC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhhcCC-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 368999999999999999999999 9999999876543322 1122 22 345567888888888776 78887665
Q ss_pred EEce-------EEEeccee-eccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 94 TLGS-------SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 94 ~v~~-------~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.... .+.+.++. ..||+||+|||+ .++.+++||.+. .+++++. +. .. ... .++++
T Consensus 79 v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~-~~~~~~~~g~~~~~~~~~~~~~-~~---~~--------~~~-~~~~v 144 (297)
T 3fbs_A 79 VTDAKGSFGEFIVEIDGGRRETAGRLILAMGV-TDELPEIAGLRERWGSAVFHCP-YC---HG--------YEL-DQGKI 144 (297)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEEEEECCCC-EEECCCCBTTGGGBTTTEESCH-HH---HT--------GGG-TTCEE
T ss_pred EEEEEEcCCeEEEEECCCCEEEcCEEEECCCC-CCCCCCCCCchhhcCCeeEEcc-cC---cc--------hhh-cCCEE
Confidence 4422 34444443 579999999999 577778888652 3333222 11 11 012 57899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ +|+++.|+... +..
T Consensus 145 ~vvG~G~~~~e~a~~l~~--------------------~g--~v~~v~~~~~~---~~~--------------------- 178 (297)
T 3fbs_A 145 GVIAASPMAIHHALMLPD--------------------WG--ETTFFTNGIVE---PDA--------------------- 178 (297)
T ss_dssp EEECCSTTHHHHHHHGGG--------------------TS--EEEEECTTTCC---CCH---------------------
T ss_pred EEEecCccHHHHHHHhhh--------------------cC--cEEEEECCCCC---CCH---------------------
Confidence 999999999999999986 44 89999887541 110
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.+.+.+. +.||+++. ..+.++. . ++ .+.+.
T Consensus 179 -----------------~~~~~l~-------------~~gv~i~~-~~v~~i~--~--~~---~v~~~------------ 208 (297)
T 3fbs_A 179 -----------------DQHALLA-------------ARGVRVET-TRIREIA--G--HA---DVVLA------------ 208 (297)
T ss_dssp -----------------HHHHHHH-------------HTTCEEEC-SCEEEEE--T--TE---EEEET------------
T ss_pred -----------------HHHHHHH-------------HCCcEEEc-ceeeeee--c--CC---eEEeC------------
Confidence 0112222 66899884 7788886 3 22 33332
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccC--CCC-eeeecCCCCCCcccCceeeeccCCCCCcchhHh
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN--IRG-RVLKNISGDSSQVENGLYVCGWLKRGPTGIIAT 399 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~--~~G-~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~ 399 (483)
++ +++++|.||+|+|++|+. +|.+..++..+ .+| ++.+|++ ++|+.|+|||+|||+..+.... .
T Consensus 209 ----~g--~~~~~D~vi~a~G~~p~~----~~~~~~g~~~~~~~~G~~i~vd~~--~~t~~~~vya~GD~~~~~~~~~-~ 275 (297)
T 3fbs_A 209 ----DG--RSIALAGLFTQPKLRITV----DWIEKLGCAVEEGPMGSTIVTDPM--KQTTARGIFACGDVARPAGSVA-L 275 (297)
T ss_dssp ----TS--CEEEESEEEECCEEECCC----SCHHHHTCCEEEETTEEEECCCTT--CBCSSTTEEECSGGGCTTCCHH-H
T ss_pred ----CC--CEEEEEEEEEccCcccCc----hhHHhcCCccccCCCCceEEeCCC--CccCCCCEEEEeecCCchHHHH-H
Confidence 22 379999999999999976 35555566655 357 8999987 7899999999999988777666 7
Q ss_pred hHHHHHHHHHHHHHHHhcCc
Q 011535 400 NLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l~~~~ 419 (483)
|+.+|..+|.+|.++|.+..
T Consensus 276 A~~~g~~aa~~i~~~l~~~~ 295 (297)
T 3fbs_A 276 AVGDGAMAGAAAHRSILFPE 295 (297)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHhHHHHHHHHHHHHhhhh
Confidence 99999999999999998753
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=274.19 Aligned_cols=290 Identities=18% Similarity=0.196 Sum_probs=201.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCCC----------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH----------------------------P 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~~----------------------------~ 69 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +++.|.+ .
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLG--FKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRL 83 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCcc
Confidence 478999999999999999999998 99999999988877532 1111110 0
Q ss_pred ChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecc-e--eeccCEEEEccCCCCCCCCCCCCCCC
Q 011535 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSE-L--RQLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~-~--~~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
....+ ...+.+.++..+++++.+..+. ..+...+ . ...||+||+|||+ .|..++++|.+.
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs-~p~~p~i~g~~~ 162 (474)
T 1zmd_A 84 NLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGS-EVTPFPGITIDE 162 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCE-EECCCTTCCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCC-CCCCCCCCCCCc
Confidence 11111 1123455666789998887642 1233333 2 3579999999998 577778888765
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
.+++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 163 ~~v~t~~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~ 208 (474)
T 1zmd_A 163 DTIVSSTGALSL----------K---KVPEKMVVIGAGVIGVELGSVWQR--------------------LG-ADVTAVE 208 (474)
T ss_dssp SSEECHHHHTTC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEC
T ss_pred CcEEcHHHHhhc----------c---ccCceEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEe
Confidence 567766544310 0 135899999999999999999986 34 5899999
Q ss_pred ecCcccc-cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecC
Q 011535 211 RRGPVQA-ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 211 r~~~~~~-~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
|++.+.. .+. +...+.+.+.+. +.||+++++.
T Consensus 209 ~~~~~l~~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~ 241 (474)
T 1zmd_A 209 FLGHVGGVGID----------------------------------MEISKNFQRILQ-------------KQGFKFKLNT 241 (474)
T ss_dssp SSSSSSCSSCC----------------------------------HHHHHHHHHHHH-------------HTTCEEECSE
T ss_pred ccCccCCcccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCc
Confidence 9876532 222 111122223332 6789999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++....+++... .++++.++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.
T Consensus 242 ~v~~i~--~-~~~~~~~v~~~~~-------------~~~~~~~i~~D~vv~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~ 303 (474)
T 1zmd_A 242 KVTGAT--K-KSDGKIDVSIEAA-------------SGGKAEVITCDVLLVCIGRRPFTK-NL-GLEELGIELDPRGRIP 303 (474)
T ss_dssp EEEEEE--E-CTTSCEEEEEEET-------------TSCCCEEEEESEEEECSCEEECCT-TS-SHHHHTCCCCTTSCCC
T ss_pred eEEEEE--E-cCCceEEEEEEec-------------CCCCceEEEcCEEEECcCCCcCCC-cC-CchhcCCccCCCCCEE
Confidence 999997 3 2332123333210 123445899999999999999861 11 1345678888889999
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 304 vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 304 VNTR--FQTKIPNIYAIGDVVAGPMLAH-KAEDEGIICVEGMAG 344 (474)
T ss_dssp CCTT--CBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred ECcC--CccCCCCEEEeeecCCCCccHH-HHHHHHHHHHHHhcC
Confidence 9988 7799999999999987765555 799999999999975
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=268.87 Aligned_cols=288 Identities=16% Similarity=0.217 Sum_probs=207.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--cc--CCC--CCChHHHHHHHHHHHhcCCeEEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--g~--~p~--~~~~~~~~~~~~~~~~~~~v~~~ 90 (483)
...++|+||||||||+++|.+|++.+ .+|+|||+ .+||.+.. ++ .+. +....++...+.+.+.+.+++++
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G--~~v~lie~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~ 285 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKG--IRTGLMGE--RFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVI 285 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECS--STTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEE
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCC--CeEEEEEC--CCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 34689999999999999999999998 99999986 35555431 11 011 22455677788888888899999
Q ss_pred eCeEEc-----------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCC---CCeeecceeeeeecCCCCCCCCCCC
Q 011535 91 GNVTLG-----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPD 155 (483)
Q Consensus 91 ~~~~v~-----------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~---~~v~~a~~~~~~~~~~~~~~~~~~~ 155 (483)
.++.+. ..+.+.++ ...||+||+|||+ .++.+++||.+. .+++... +.+ ..
T Consensus 286 ~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~-~~~~~~ipG~~~~~~~~v~~~~--------~~~-----~~ 351 (521)
T 1hyu_A 286 DSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA-KWRNMNVPGEDQYRTKGVTYCP--------HCD-----GP 351 (521)
T ss_dssp CSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTTTTTEECCT--------TCC-----GG
T ss_pred cCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC-CcCCCCCCChhhhcCceEEEee--------cCc-----hh
Confidence 885432 12444444 3569999999998 567778888641 2232111 100 01
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeE
Q 011535 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (483)
Q Consensus 156 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~ 235 (483)
...+++|+|||+|++|+|+|..|++ ...+|+++.|.+.+.. .
T Consensus 352 ~~~~k~V~ViGgG~~g~E~A~~L~~---------------------~g~~Vtlv~~~~~l~~--~--------------- 393 (521)
T 1hyu_A 352 LFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEMKA--D--------------- 393 (521)
T ss_dssp GGBTSEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEECSSSSCCS--C---------------
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEeCcccCc--C---------------
Confidence 1257899999999999999999985 2468999998865321 0
Q ss_pred EeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee
Q 011535 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~ 315 (483)
+.+.+.+. ...||+++++..+.++. + +++++.++.+.+.
T Consensus 394 -----------------------~~l~~~l~------------~~~gV~v~~~~~v~~i~--~-~~~~v~~v~~~~~--- 432 (521)
T 1hyu_A 394 -----------------------QVLQDKVR------------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR--- 432 (521)
T ss_dssp -----------------------HHHHHHHT------------TCTTEEEECSEEEEEEE--E-CSSSEEEEEEEET---
T ss_pred -----------------------HHHHHHHh------------cCCCcEEEeCCEEEEEE--c-CCCcEEEEEEEeC---
Confidence 00111221 02689999999999997 4 3567777776541
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG 395 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~ 395 (483)
.+|+..++++|.||+|+|++|++ +|... .+.++++|++.+|++ ++|+.|+|||+|||+..+..
T Consensus 433 ----------~~g~~~~i~~D~vi~a~G~~pn~----~~l~~-~l~~~~~G~I~Vd~~--~~ts~p~VfA~GD~~~~~~~ 495 (521)
T 1hyu_A 433 ----------VSGDIHSVALAGIFVQIGLLPNT----HWLEG-ALERNRMGEIIIDAK--CETSVKGVFAAGDCTTVPYK 495 (521)
T ss_dssp ----------TTCCEEEEECSEEEECCCEEESC----GGGTT-TSCBCTTSCBCCCTT--CBCSSTTEEECSTTBCCSSC
T ss_pred ----------CCCceEEEEcCEEEECcCCCCCc----hHHhh-hhccCCCCcEEeCCC--CCCCCCCEEEeecccCCCcc
Confidence 14555689999999999999986 34444 477788899999987 77999999999999886644
Q ss_pred hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 396 IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+..|+.+|..+|.+|..+|.+.
T Consensus 496 ~~~~A~~~g~~aa~~i~~~L~~~ 518 (521)
T 1hyu_A 496 QIIIATGEGAKASLSAFDYLIRT 518 (521)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHhHHHHHHHHHHHHHhh
Confidence 44479999999999999998764
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=269.00 Aligned_cols=283 Identities=15% Similarity=0.210 Sum_probs=196.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ec------------------------ccCCCC--CCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RS------------------------GVAPDH--PET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~------------------------g~~p~~--~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+. .+||.. .+ |+.... ...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 468999999999999999999998 999999998 555532 11 111000 011
Q ss_pred HH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCe
Q 011535 72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (483)
Q Consensus 72 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v 133 (483)
.. +...+.+.++..+++++.+..+. ..+...++ ...||+||+|||+ .+..++++|.+.. +
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs-~p~~~~~~g~~~~-v 157 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGS-RPIELPNFKFSNR-I 157 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCE-EECCBTTBCCCSS-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCC-CCCCCCCCCccce-E
Confidence 11 22234556677789998887642 12333333 3479999999998 5666777776533 5
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++..++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+
T Consensus 158 ~~~~~~~~----~------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~ 203 (455)
T 1ebd_A 158 LDSTGALN----L------G---EVPKSLVVIGGGYIGIELGTAYAN--------------------FG-TKVTILEGAG 203 (455)
T ss_dssp ECHHHHHT----C------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSS
T ss_pred ecHHHHhc----c------c---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCC
Confidence 54443321 0 0 136899999999999999999986 44 4899999987
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +...+.+.+.+. +.||+++++..+.+
T Consensus 204 ~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 204 EILSGFE----------------------------------KQMAAIIKKRLK-------------KKGVEVVTNALAKG 236 (455)
T ss_dssp SSSTTSC----------------------------------HHHHHHHHHHHH-------------HTTCEEEESEEEEE
T ss_pred ccccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEE
Confidence 5432221 111222223333 67899999999999
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc--cCCCCcccCCCCeeeec
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKGIVPNIRGRVLKN 371 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~--~~~~g~~~~~~G~v~v~ 371 (483)
+. . +++.+ .+++.. ++++.++++|.||+|+|++|+. ++ .+..|+.++++|++.+|
T Consensus 237 i~--~-~~~~~-~v~~~~---------------~g~~~~~~~D~vv~a~G~~p~~----~~l~~~~~g~~~~~~G~i~vd 293 (455)
T 1ebd_A 237 AE--E-REDGV-TVTYEA---------------NGETKTIDADYVLVTVGRRPNT----DELGLEQIGIKMTNRGLIEVD 293 (455)
T ss_dssp EE--E-ETTEE-EEEEEE---------------TTEEEEEEESEEEECSCEEESC----SSSSTTTTTCCBCTTSCBCCC
T ss_pred EE--E-eCCeE-EEEEEe---------------CCceeEEEcCEEEECcCCCccc----CcCChhhcCCccCCCCCEeeC
Confidence 97 3 23322 233321 2345689999999999999986 22 35678888888999999
Q ss_pred CCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 372 ~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 294 ~~--~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 294 QQ--CRTSVPNIFAIGDIVPGPALAH-KASYEGKVAAEAIAG 332 (455)
T ss_dssp TT--CBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHTS
T ss_pred CC--cccCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 98 7799999999999987665554 799999999999974
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-32 Score=273.65 Aligned_cols=288 Identities=18% Similarity=0.227 Sum_probs=197.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
++|+|||||+||++||..|++.+++.+|+|||+.+.++.. +...+..+......+ ....+++.+.+++++.++.+.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~v~ 81 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPEVT 81 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCEEE
Confidence 5899999999999999999999955669999999875321 111010111111111 122334456789999985442
Q ss_pred ------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 97 ------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 97 ------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
+.+.+.++ ...||+||||||+ .++.+++||.+.+++++.+.+.....-. ..+..+++++|||+|+
T Consensus 82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~ipG~~~~~v~~~~~~~d~~~l~-------~~~~~~~~vvViGgG~ 153 (410)
T 3ef6_A 82 ALDVQTRTISLDDGTTLSADAIVIATGS-RARTMALPGSQLPGVVTLRTYGDVQVLR-------DSWTSATRLLIVGGGL 153 (410)
T ss_dssp EEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTTTSTTEECCCSHHHHHHHH-------HHCCTTCEEEEECCSH
T ss_pred EEECCCCEEEECCCCEEECCEEEEccCC-cccCCCCCCccccceEEeccHHHHHHHH-------HHhccCCeEEEECCCH
Confidence 24555554 3579999999998 5888889998878887654432211100 0122578999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.+.+.+....
T Consensus 154 ~g~E~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~------------------------------ 182 (410)
T 3ef6_A 154 IGCEVATTARK--------------------LG-LSVTILEAGDELLVRV------------------------------ 182 (410)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEECSSSSSSHHH------------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CeEEEEecCCccchhh------------------------------
Confidence 99999999986 34 5799999887542100
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
..+...+.+.+.+. +.||+++++..+.++. . ++++..+++.+ |
T Consensus 183 ---~~~~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~--~~~~~~v~~~d----------------g- 225 (410)
T 3ef6_A 183 ---LGRRIGAWLRGLLT-------------ELGVQVELGTGVVGFS--G--EGQLEQVMASD----------------G- 225 (410)
T ss_dssp ---HCHHHHHHHHHHHH-------------HHTCEEECSCCEEEEE--C--SSSCCEEEETT----------------S-
T ss_pred ---cCHHHHHHHHHHHH-------------HCCCEEEeCCEEEEEe--c--cCcEEEEEECC----------------C-
Confidence 00112222223332 6799999999999997 4 44554554422 2
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc--------hhHhhH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG--------IIATNL 401 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~--------~~~~a~ 401 (483)
++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+.. .+..|+
T Consensus 226 -~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~ 296 (410)
T 3ef6_A 226 -RSFVADSALICVGAEPAD----QLARQAGLACD-RG-VIVDHC--GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQ 296 (410)
T ss_dssp -CEEECSEEEECSCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHH
T ss_pred -CEEEcCEEEEeeCCeecH----HHHHhCCCccC-Ce-EEEccC--eeECCCCEEEEEcceeccCCCCCeeeechHHHHH
Confidence 389999999999999986 45566788776 55 888887 78999999999999865431 134799
Q ss_pred HHHHHHHHHHHH
Q 011535 402 YCAEETVASISE 413 (483)
Q Consensus 402 ~~g~~~a~~I~~ 413 (483)
.||+.+|.+|+.
T Consensus 297 ~qg~~aa~~i~g 308 (410)
T 3ef6_A 297 RQAAAVAAAILG 308 (410)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999999975
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=270.32 Aligned_cols=288 Identities=17% Similarity=0.190 Sum_probs=199.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCCC----------------------------C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH----------------------------P 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~~----------------------------~ 69 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +++.|.. .
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLG--MKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 468999999999999999999998 99999999988877422 1211110 0
Q ss_pred ChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCCCC
Q 011535 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
....+ ...+.+.++..+++++.++.+. ..+...++ ...||+||+|||+ .+..++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~-~p~~p~~~g~~~ 158 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGS-EPTELPFLPFDE 158 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCBTTBCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCC-CcCCCCCCCCCc
Confidence 11111 1123445556689988876542 12333333 3479999999998 577777888766
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
++++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 159 ~~v~t~~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~ 204 (468)
T 2qae_A 159 KVVLSSTGALAL----------P---RVPKTMVVIGGGVIGLELGSVWAR--------------------LG-AEVTVVE 204 (468)
T ss_dssp SSEECHHHHHTC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEC
T ss_pred CceechHHHhhc----------c---cCCceEEEECCCHHHHHHHHHHHH--------------------hC-CEEEEEe
Confidence 667766554421 0 146899999999999999999986 34 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHH-HHHHHhcCCCCCCCcceEEEeecC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELL-SKAAASASSQPMLGQRELHFVFFR 289 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l-~~~~~~~~~~~~~~~~~i~~~~~~ 289 (483)
|.+.+...+. +...+.+.+.+ . ++||+++++.
T Consensus 205 ~~~~~l~~~d----------------------------------~~~~~~l~~~l~~-------------~~gv~i~~~~ 237 (468)
T 2qae_A 205 FAPRCAPTLD----------------------------------EDVTNALVGALAK-------------NEKMKFMTST 237 (468)
T ss_dssp SSSSSSTTSC----------------------------------HHHHHHHHHHHHH-------------HTCCEEECSC
T ss_pred cCCcccccCC----------------------------------HHHHHHHHHHHhh-------------cCCcEEEeCC
Confidence 9876532221 11122222333 2 6799999999
Q ss_pred CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 290 ~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.+.++. . +++.+ .+.+.. .+|+.+++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.
T Consensus 238 ~v~~i~--~-~~~~~-~v~~~~--------------~~g~~~~i~~D~vv~a~G~~p~~~-~l-~l~~~gl~~~~~G~i~ 297 (468)
T 2qae_A 238 KVVGGT--N-NGDSV-SLEVEG--------------KNGKRETVTCEALLVSVGRRPFTG-GL-GLDKINVAKNERGFVK 297 (468)
T ss_dssp EEEEEE--E-CSSSE-EEEEEC--------------C---EEEEEESEEEECSCEEECCT-TS-CHHHHTCCBCTTSCBC
T ss_pred EEEEEE--E-cCCeE-EEEEEc--------------CCCceEEEECCEEEECCCcccCCC-CC-CchhcCCccCCCCCEe
Confidence 999997 3 22322 233321 023335899999999999999861 11 1345678888889999
Q ss_pred ecCCCCCCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++ ++|+.|+|||+|||+. .+.... .|+.||+.+|.+|..
T Consensus 298 vd~~--~~t~~~~IyA~GD~~~~~~~~~~-~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 298 IGDH--FETSIPDVYAIGDVVDKGPMLAH-KAEDEGVACAEILAG 339 (468)
T ss_dssp CCTT--SBCSSTTEEECGGGBSSSCSCHH-HHHHHHHHHHHHHTT
T ss_pred ECCC--cccCCCCEEEeeccCCCCCccHh-HHHHHHHHHHHHHcC
Confidence 9988 7799999999999987 666555 799999999999974
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=271.37 Aligned_cols=290 Identities=16% Similarity=0.189 Sum_probs=193.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCCChHHHHHHHHHHH-hcCCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHPETKIVINQFSRVV-QHERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 94 (483)
+++|+|||||+||+++|..|++.+++.+|+|||+.+.+++.. +++ .++.....++.....+.+ +..+++++.++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 81 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP-CGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAE 81 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------CTHHHHTTCEEETTCE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC-cCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCE
Confidence 579999999999999999999996669999999998754321 111 122222333333333333 567899999865
Q ss_pred Ec------eEEEecce--eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 95 LG------SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 95 v~------~~~~~~~~--~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
+. ..+...+. ...||+||||||+ .++.+++||.+.+++++........... ...... .+++++|||
T Consensus 82 v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~~~----~~~~~~-~~~~vvViG 155 (449)
T 3kd9_A 82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGA-SPQVPAIEGVNLKGVFTADLPPDALAIR----EYMEKY-KVENVVIIG 155 (449)
T ss_dssp EEEECSSEEEEECSSSEEEEECSEEEECCCE-EECCCSCBTTTSTTEECSCSTHHHHHHH----HHHSSS-CCCEEEEEC
T ss_pred EEEEecCCCEEEECCceEEEEcCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHHHH----HHHHhc-CCCeEEEEC
Confidence 52 23444443 3469999999998 6777889998877777654332111100 000011 568999999
Q ss_pred CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc-CCHHHHHHHhcCCCeeEEeccccccCC
Q 011535 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-CTAKELREILGIKNLYVHIREDDLIKS 245 (483)
Q Consensus 167 ~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~-f~~~el~~~~~~~~~~~~~~~~~~~~~ 245 (483)
+|++|+|+|..|.+ .+ .+|+++.|++.+... +. ++
T Consensus 156 gG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~-~~---------------------- 191 (449)
T 3kd9_A 156 GGYIGIEMAEAFAA--------------------QG-KNVTMIVRGERVLRRSFD-KE---------------------- 191 (449)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSC-HH----------------------
T ss_pred CCHHHHHHHHHHHh--------------------CC-CeEEEEEcCCccchhhcC-HH----------------------
Confidence 99999999999986 34 589999998765433 22 11
Q ss_pred CCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeec
Q 011535 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (483)
Q Consensus 246 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~ 325 (483)
.. +.+.+... +. |+++++..+.++. . ++.+..+..
T Consensus 192 -----------~~----~~l~~~l~---------~~-v~i~~~~~v~~i~--~--~~~v~~v~~---------------- 226 (449)
T 3kd9_A 192 -----------VT----DILEEKLK---------KH-VNLRLQEITMKIE--G--EERVEKVVT---------------- 226 (449)
T ss_dssp -----------HH----HHHHHHHT---------TT-SEEEESCCEEEEE--C--SSSCCEEEE----------------
T ss_pred -----------HH----HHHHHHHH---------hC-cEEEeCCeEEEEe--c--cCcEEEEEe----------------
Confidence 11 22222221 45 9999999999987 4 334432211
Q ss_pred cCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC------CC---cch
Q 011535 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------GP---TGI 396 (483)
Q Consensus 326 ~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~------g~---~~~ 396 (483)
++ .+++||.||+|+|++|+. ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+. |. ...
T Consensus 227 -~g--~~i~~D~Vv~a~G~~p~~----~l~~~~gl~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l 297 (449)
T 3kd9_A 227 -DA--GEYKAELVILATGIKPNI----ELAKQLGVRIGETGAIWTNEK--MQTSVENVYAAGDVAETRHVITGRRVWVPL 297 (449)
T ss_dssp -TT--EEEECSEEEECSCEEECC----HHHHHTTCCBCTTSSBCCCTT--CBCSSTTEEECSTTBCEEBTTTCSEECCCC
T ss_pred -CC--CEEECCEEEEeeCCccCH----HHHHhCCccCCCCCCEEECCC--CccCCCCEEEeeeeeeeccccCCceEEecc
Confidence 12 479999999999999986 355667888999999999987 7899999999999974 21 123
Q ss_pred hHhhHHHHHHHHHHHHH
Q 011535 397 IATNLYCAEETVASISE 413 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~ 413 (483)
...|..||+.+|.+|+.
T Consensus 298 ~~~A~~~g~~aa~~i~g 314 (449)
T 3kd9_A 298 APAGNKMGYVAGSNIAG 314 (449)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34799999999999864
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=269.93 Aligned_cols=290 Identities=18% Similarity=0.211 Sum_probs=200.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCCC---------------------------C
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH---------------------------P 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~~---------------------------~ 69 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +++.|.. .
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 82 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 4689999999999999999999998 99999999987776432 1211110 0
Q ss_pred ChHH-----------HHHHHHHHHhcCCeEEEeCeEEce-----EEEecce---eeccCEEEEccCCCCCCCCCCCCCCC
Q 011535 70 ETKI-----------VINQFSRVVQHERCSFFGNVTLGS-----SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (483)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~-----~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~ 130 (483)
.... +...+...++..+++++.+..+.. .+...++ ...||+||+|||+ .+..++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs-~p~~p~~~g~~~ 161 (470)
T 1dxl_A 83 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGS-DVKSLPGVTIDE 161 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCE-EECCBTTBCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCc
Confidence 1111 111234455566899888876521 2222333 3479999999998 577777888765
Q ss_pred CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEe
Q 011535 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~ 210 (483)
+++++..++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 162 ~~v~~~~~~~~~----------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~ 207 (470)
T 1dxl_A 162 KKIVSSTGALAL----------S---EIPKKLVVIGAGYIGLEMGSVWGR--------------------IG-SEVTVVE 207 (470)
T ss_dssp SSEECHHHHTTC----------S---SCCSEEEESCCSHHHHHHHHHHHH--------------------HT-CEEEEEC
T ss_pred ccEEeHHHhhhh----------h---hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEE
Confidence 567665543310 0 146899999999999999999875 34 4799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCC
Q 011535 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (483)
Q Consensus 211 r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 290 (483)
|++.+...+. +...+.+.+.+. +.||+++++..
T Consensus 208 ~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~ 240 (470)
T 1dxl_A 208 FASEIVPTMD----------------------------------AEIRKQFQRSLE-------------KQGMKFKLKTK 240 (470)
T ss_dssp SSSSSSTTSC----------------------------------HHHHHHHHHHHH-------------HSSCCEECSEE
T ss_pred cCCccccccc----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCCE
Confidence 9875432221 111222223333 67899999999
Q ss_pred cceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeee
Q 011535 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (483)
Q Consensus 291 ~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v 370 (483)
+.++. . +++.+ .+.+... .+|+..++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.+
T Consensus 241 v~~i~--~-~~~~~-~v~~~~~-------------~~g~~~~~~~D~vv~a~G~~p~~~-~l-~~~~~gl~~~~~G~i~v 301 (470)
T 1dxl_A 241 VVGVD--T-SGDGV-KLTVEPS-------------AGGEQTIIEADVVLVSAGRTPFTS-GL-NLDKIGVETDKLGRILV 301 (470)
T ss_dssp EEEEE--C-SSSSE-EEEEEES-------------SSCCCEEEEESEEECCCCEEECCT-TS-CCTTTTCCBCSSSCBCC
T ss_pred EEEEE--E-cCCeE-EEEEEec-------------CCCcceEEECCEEEECCCCCcCCC-CC-CchhcCCccCCCCCEeE
Confidence 99997 3 22322 3333310 023345899999999999999861 11 14667888888899999
Q ss_pred cCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 371 ~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 302 d~~--~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 302 NER--FSTNVSGVYAIGDVIPGPMLAH-KAEEDGVACVEYLAG 341 (470)
T ss_dssp CTT--CBCSSTTEEECSTTSSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred CcC--CccCCCCEEEEeccCCCCccHH-HHHHHHHHHHHHHcC
Confidence 988 7799999999999987665454 799999999999974
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=268.63 Aligned_cols=288 Identities=22% Similarity=0.283 Sum_probs=194.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee--------------------------cccCCCCC--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--------------------------SGVAPDHP-- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~--------------------------~g~~p~~~-- 69 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. +|+....+
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 101 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKL 101 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCcc
Confidence 3579999999999999999999999 99999999888887421 11111110
Q ss_pred ChHH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCCC-
Q 011535 70 ETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGED- 129 (483)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~- 129 (483)
.... +...+...+...+++++.+.... ..+...++ ...||+||||||+. + +.+||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~-p--~~ipg~~~ 178 (491)
T 3urh_A 102 NLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSD-V--AGIPGVEV 178 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEE-C--CCBTTBCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCC-C--CCCCCccc
Confidence 1111 11223444566788888776542 12333333 34699999999984 3 4566654
Q ss_pred ---CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 130 ---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 130 ---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
...++++.++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|
T Consensus 179 ~~~~~~~~~~~~~~~----~--------~-~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~V 224 (491)
T 3urh_A 179 AFDEKTIVSSTGALA----L--------E-KVPASMIVVGGGVIGLELGSVWAR--------------------LG-AKV 224 (491)
T ss_dssp CCCSSSEECHHHHTS----C--------S-SCCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEE
T ss_pred ccCCeeEEehhHhhh----h--------h-hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEE
Confidence 223444332221 0 1 146899999999999999999985 33 489
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.+.+.+...+. +...+.+.+.+. +.||+++
T Consensus 225 tlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gV~v~ 257 (491)
T 3urh_A 225 TVVEFLDTILGGMD----------------------------------GEVAKQLQRMLT-------------KQGIDFK 257 (491)
T ss_dssp EEECSSSSSSSSSC----------------------------------HHHHHHHHHHHH-------------HTTCEEE
T ss_pred EEEeccccccccCC----------------------------------HHHHHHHHHHHH-------------hCCCEEE
Confidence 99998876543222 111222223332 6789999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCC
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G 366 (483)
++..+.++. . +++. ..+.+.+. .+|+.+++++|.||+|+|++|+.. .+. .+..|+.++++|
T Consensus 258 ~~~~v~~i~--~-~~~~-~~v~~~~~-------------~~g~~~~i~~D~Vi~a~G~~p~~~-~l~-l~~~g~~~~~~G 318 (491)
T 3urh_A 258 LGAKVTGAV--K-SGDG-AKVTFEPV-------------KGGEATTLDAEVVLIATGRKPSTD-GLG-LAKAGVVLDSRG 318 (491)
T ss_dssp CSEEEEEEE--E-ETTE-EEEEEEET-------------TSCCCEEEEESEEEECCCCEECCT-TSC-HHHHTCCBCTTS
T ss_pred ECCeEEEEE--E-eCCE-EEEEEEec-------------CCCceEEEEcCEEEEeeCCccCCC-ccC-chhcCceECCCC
Confidence 999999987 3 2332 23444320 124446899999999999999761 111 345578888899
Q ss_pred eeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 367 ~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++.+|++ ++|+.|+|||+|||+.+|.... .|..+|+.+|.+|+.
T Consensus 319 ~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 319 RVEIDRH--FQTSIAGVYAIGDVVRGPMLAH-KAEDEGVAVAEIIAG 362 (491)
T ss_dssp CBCCCTT--CBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred CEeECCC--CCCCCCCEEEEEecCCCccchh-HHHHHHHHHHHHHcC
Confidence 9999987 7899999999999987776665 799999999999975
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=262.54 Aligned_cols=288 Identities=15% Similarity=0.217 Sum_probs=198.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc-------cCC------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-------VAP------------------------ 66 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g-------~~p------------------------ 66 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+.++|...+| +.|
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCC--CEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3579999999999999999999999 9999999997433322111 111
Q ss_pred -CC--CChHH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCC
Q 011535 67 -DH--PETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 67 -~~--~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ 124 (483)
.. ..... +...+...++..+++++.+.... ..+...++ ...||+||||||+ .|..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~~~~ 158 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGS-KPVEIP 158 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCE-EECCCT
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCC-CCCCCC
Confidence 00 01111 11123344556688988886542 23333333 3469999999998 455555
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
.++.+...++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 159 ~~~~~~~~v~~~~~~~~~------------~-~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~ 204 (476)
T 3lad_A 159 PAPVDQDVIVDSTGALDF------------Q-NVPGKLGVIGAGVIGLELGSVWAR--------------------LG-A 204 (476)
T ss_dssp TSCCCSSSEEEHHHHTSC------------S-SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-C
T ss_pred CCCCCcccEEechhhhcc------------c-cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 555555667776554321 0 146899999999999999999986 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+|+++.|.+.+...+. +.....+.+.+. +.||+
T Consensus 205 ~Vtlv~~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~ 237 (476)
T 3lad_A 205 EVTVLEAMDKFLPAVD----------------------------------EQVAKEAQKILT-------------KQGLK 237 (476)
T ss_dssp EEEEEESSSSSSTTSC----------------------------------HHHHHHHHHHHH-------------HTTEE
T ss_pred cEEEEecCCCcCcccC----------------------------------HHHHHHHHHHHH-------------hCCCE
Confidence 7999999876533222 111222223333 67999
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. . +++.+ .+.+.+ ..+ .+++++|.||+|+|++|+.- .+ ..+..|+.+++
T Consensus 238 v~~~~~v~~i~--~-~~~~~-~v~~~~--------------~~g-~~~~~~D~vi~a~G~~p~~~-~l-~~~~~g~~~~~ 296 (476)
T 3lad_A 238 ILLGARVTGTE--V-KNKQV-TVKFVD--------------AEG-EKSQAFDKLIVAVGRRPVTT-DL-LAADSGVTLDE 296 (476)
T ss_dssp EEETCEEEEEE--E-CSSCE-EEEEES--------------SSE-EEEEEESEEEECSCEEECCT-TC-CSSCCSCCBCT
T ss_pred EEECCEEEEEE--E-cCCEE-EEEEEe--------------CCC-cEEEECCEEEEeeCCcccCC-CC-CccccCccccC
Confidence 99999999997 3 23333 243332 012 35899999999999999762 11 24667888999
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|++.+|++ ++|+.|+|||+|||+.+|.... .|..+|+.+|.+|..
T Consensus 297 ~G~i~vd~~--~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 342 (476)
T 3lad_A 297 RGFIYVDDY--CATSVPGVYAIGDVVRGAMLAH-KASEEGVVVAERIAG 342 (476)
T ss_dssp TSCBCCCTT--SBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred CCCEeeCCC--cccCCCCEEEEEccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 999999988 7799999999999987777665 799999999999975
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=271.65 Aligned_cols=291 Identities=16% Similarity=0.171 Sum_probs=198.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc---eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl---~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+++|+|||||+||++||..|++.+++.+|+|||+++.+... +...+..+.....++.....+++...+++++.....
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~ 80 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMV 80 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEE
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEE
Confidence 36899999999999999999999955599999998854211 111111222122222223344555678998873333
Q ss_pred c-----eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 96 G-----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 96 ~-----~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
. +.+.+.++ ...||+||+|||+ .++.+++||.+.++++..+.+....... ..+..+++++|||+|+
T Consensus 81 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~i~g~~~~~v~~~~~~~d~~~l~-------~~~~~~~~vvViGgG~ 152 (404)
T 3fg2_P 81 SIDREGRKLLLASGTAIEYGHLVLATGA-RNRMLDVPNASLPDVLYLRTLDESEVLR-------QRMPDKKHVVVIGAGF 152 (404)
T ss_dssp EEETTTTEEEESSSCEEECSEEEECCCE-EECCCCSTTTTSTTEECCSSHHHHHHHH-------HHGGGCSEEEEECCSH
T ss_pred EEECCCCEEEECCCCEEECCEEEEeeCC-CccCCCCCCCCCCcEEEECCHHHHHHHH-------HHhhcCCeEEEECCCH
Confidence 2 23555554 3479999999998 6788889998878887544322111000 0011468999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.+.+.........
T Consensus 153 ~g~e~A~~l~~--------------------~g-~~Vtvv~~~~~~~~~~~~~--------------------------- 184 (404)
T 3fg2_P 153 IGLEFAATARA--------------------KG-LEVDVVELAPRVMARVVTP--------------------------- 184 (404)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCH---------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CEEEEEeCCCcchhhccCH---------------------------
Confidence 99999999985 33 5899999887543211111
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
.....+.+.+. +.||+++++..+.++. . +++++..+++.+ |
T Consensus 185 ------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~~V~~~d----------------G- 225 (404)
T 3fg2_P 185 ------EISSYFHDRHS-------------GAGIRMHYGVRATEIA--A-EGDRVTGVVLSD----------------G- 225 (404)
T ss_dssp ------HHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E-ETTEEEEEEETT----------------S-
T ss_pred ------HHHHHHHHHHH-------------hCCcEEEECCEEEEEE--e-cCCcEEEEEeCC----------------C-
Confidence 11122223332 6799999999999997 4 356665555432 2
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcc---------hhHhh
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG---------IIATN 400 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~---------~~~~a 400 (483)
++++||+||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+.. .+..|
T Consensus 226 -~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~G-i~vd~~--~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A 296 (404)
T 3fg2_P 226 -NTLPCDLVVVGVGVIPNV----EIAAAAGLPTA-AG-IIVDQQ--LLTSDPHISAIGDCALFESVRFGETMRVESVQNA 296 (404)
T ss_dssp -CEEECSEEEECCCEEECC----HHHHHTTCCBS-SS-EEECTT--SBCSSTTEEECGGGEEEEETTTTEEECCCSHHHH
T ss_pred -CEEEcCEEEECcCCccCH----HHHHhCCCCCC-CC-EEECCC--cccCCCCEEEeecceeecCccCCceeeehHHHHH
Confidence 389999999999999986 35566777776 56 888887 77999999999999865431 13479
Q ss_pred HHHHHHHHHHHHH
Q 011535 401 LYCAEETVASISE 413 (483)
Q Consensus 401 ~~~g~~~a~~I~~ 413 (483)
..||+.+|.+|+.
T Consensus 297 ~~qg~~aa~~i~g 309 (404)
T 3fg2_P 297 TDQARCVAARLTG 309 (404)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999874
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=255.85 Aligned_cols=306 Identities=14% Similarity=0.134 Sum_probs=191.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-------------CC---------CCCChHHHHH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------AP---------DHPETKIVIN 76 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-------------~p---------~~~~~~~~~~ 76 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+.+.+||.+.+.. .+ .++...++..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence 368999999999999999999998 99999999998887654310 01 1223367788
Q ss_pred HHHHHHhcCCeEEEeCeEEce--------E-EEecceeeccCEEEEccCCC-CCCCCCCCCCCC-C-Ceeecceeeeeec
Q 011535 77 QFSRVVQHERCSFFGNVTLGS--------S-VSLSELRQLYHVVVLAYGAE-SDRALGIPGEDL-I-GVHSAREFVWWYN 144 (483)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~v~~--------~-~~~~~~~~~yd~vvlAtG~~-~~~~~~ipg~~~-~-~v~~a~~~~~~~~ 144 (483)
++.+.+++.+++++.++.+.. . +++.++...||+||+|||.. .+..+.+||.+. . .+++...+..
T Consensus 81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 157 (357)
T 4a9w_A 81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST--- 157 (357)
T ss_dssp HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC---
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC---
Confidence 888888888999988865521 2 45555556799999999972 455677888642 1 1222222211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc-cc-CCHH
Q 011535 145 GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ-AA-CTAK 222 (483)
Q Consensus 145 ~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~-~~-f~~~ 222 (483)
.... .+++|+|||+|++|+|+|..|.+ .+ +|+++.|+.+.. .. +...
T Consensus 158 --------~~~~-~~~~v~VvG~G~~g~e~a~~l~~--------------------~~--~v~~v~~~~~~~~~~~~~~~ 206 (357)
T 4a9w_A 158 --------PAPF-AGMRVAIIGGGNSGAQILAEVST--------------------VA--ETTWITQHEPAFLADDVDGR 206 (357)
T ss_dssp --------SGGG-TTSEEEEECCSHHHHHHHHHHTT--------------------TS--EEEEECSSCCCBCCTTCCTH
T ss_pred --------hhhc-CCCEEEEECCCcCHHHHHHHHHh--------------------hC--CEEEEECCCCeecchhhcCc
Confidence 0112 57899999999999999999986 33 599999985322 11 1111
Q ss_pred HHHHHhc-----CCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 223 ELREILG-----IKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 223 el~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+.+... .....+. +..............+.+.+ +.++ +.....+.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--------------~~g~-i~~~~~v~~~~-- 260 (357)
T 4a9w_A 207 VLFERATERWKAQQEGREP---------DLPPGGFGDIVMVPPVLDAR--------------ARGV-LAAVPPPARFS-- 260 (357)
T ss_dssp HHHTC-------------------------------CBCCCHHHHHHH--------------HTTC-CCEECCCSEEE--
T ss_pred cHHHHHHHHHhccccccCC---------CcccccccCcccChhHHHHH--------------hcCc-eEEecCcceEe--
Confidence 1111000 0000000 00000000000000000111 1121 22233333443
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC-CCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS-GDS 376 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~-~~~ 376 (483)
. + .+. ..++++++||+||+|+|++|+. +|.+..++. +++|++.+|++ + +
T Consensus 261 ~--~----~v~------------------~~~g~~i~~D~vi~a~G~~p~~----~~l~~~gl~-~~~G~i~vd~~~l-~ 310 (357)
T 4a9w_A 261 P--T----GMQ------------------WADGTERAFDAVIWCTGFRPAL----SHLKGLDLV-TPQGQVEVDGSGL-R 310 (357)
T ss_dssp T--T----EEE------------------CTTSCEEECSEEEECCCBCCCC----GGGTTTTCB-CTTSCBCBCTTSC-B
T ss_pred C--C----eeE------------------ECCCCEecCCEEEECCCcCCCC----cccCccccc-CCCCCccccCCcc-c
Confidence 1 1 111 1223489999999999999985 466777887 78899999987 5 7
Q ss_pred CcccCceeeec--cCCC-CCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 377 SQVENGLYVCG--WLKR-GPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 377 ~t~~p~vya~G--d~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
+|+.|+|||+| ||+. ++..+. .|+.+|+.+|.+|.++|.+
T Consensus 311 ~t~~~~vya~Gd~d~~~~~~~~~~-~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 311 ALAVPSVWLLGYGDWNGMASATLI-GVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BSSCTTEEECSSCGGGSTTCSSTT-THHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCeEEeccccccccchhhhh-hhHHHHHHHHHHHHHHHHh
Confidence 89999999999 6665 344555 7999999999999999976
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-31 Score=270.52 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=194.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCC--------------------------CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPD--------------------------HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~--------------------------~~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+. .+||.. .+++.|. ....
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G--~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLG--LSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 368999999999999999999998 999999998 445432 1111110 0011
Q ss_pred HH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCCCCCC
Q 011535 72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLIG 132 (483)
Q Consensus 72 ~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~ 132 (483)
.. +...+.+.++..+++++.++.+. ..+...++ ...||+||+|||+ .++.++++|.+..
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~-~~~~~~~~g~~~~- 157 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGS-STRLVPGTSLSAN- 157 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCE-EECCCTTCCCBTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCce-
Confidence 11 11223455666789998877642 12333333 3579999999999 5666777775533
Q ss_pred eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 133 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
+++..++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.
T Consensus 158 ~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~ 203 (464)
T 2a8x_A 158 VVTYEEQIL----S------R---ELPKSIIIAGAGAIGMEFGYVLKN--------------------YG-VDVTIVEFL 203 (464)
T ss_dssp EECHHHHHT----C------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSS
T ss_pred EEecHHHhh----c------c---ccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEcC
Confidence 555444321 0 0 136899999999999999999986 34 489999998
Q ss_pred CcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcc
Q 011535 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (483)
Q Consensus 213 ~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (483)
+.+...+. +...+.+.+.+. ++||+++++..+.
T Consensus 204 ~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~ 236 (464)
T 2a8x_A 204 PRALPNED----------------------------------ADVSKEIEKQFK-------------KLGVTILTATKVE 236 (464)
T ss_dssp SSSSTTSC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCEEE
T ss_pred CccccccC----------------------------------HHHHHHHHHHHH-------------HcCCEEEeCcEEE
Confidence 76532222 111222223333 5689999999999
Q ss_pred eeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecC
Q 011535 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (483)
Q Consensus 293 ~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~ 372 (483)
++. . +++.+ .+.+.. +|+.+++++|.||+|+|++|+.. .+ ..+..|+.++++|+|.+|+
T Consensus 237 ~i~--~-~~~~~-~v~~~~---------------~g~~~~~~~D~vv~a~G~~p~~~-~l-~~~~~gl~~~~~G~i~vd~ 295 (464)
T 2a8x_A 237 SIA--D-GGSQV-TVTVTK---------------DGVAQELKAEKVLQAIGFAPNVE-GY-GLDKAGVALTDRKAIGVDD 295 (464)
T ss_dssp EEE--E-CSSCE-EEEEES---------------SSCEEEEEESEEEECSCEEECCS-SS-CHHHHTCCBCTTSSBCCCT
T ss_pred EEE--E-cCCeE-EEEEEc---------------CCceEEEEcCEEEECCCCCccCC-CC-CchhcCCccCCCCCEeECc
Confidence 997 4 23322 233321 24445899999999999999861 11 1345678888889999999
Q ss_pred CCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 373 ~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 296 ~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 296 Y--MRTNVGHIYAIGDVNGLLQLAH-VAEAQGVVAAETIAG 333 (464)
T ss_dssp T--SBCSSTTEEECGGGGCSSCSHH-HHHHHHHHHHHHHHT
T ss_pred C--CccCCCCEEEeECcCCCccCHH-HHHHHHHHHHHHhcC
Confidence 8 7799999999999987665554 799999999999974
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=270.50 Aligned_cols=284 Identities=14% Similarity=0.134 Sum_probs=194.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCC------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAP------------------------------ 66 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p------------------------------ 66 (483)
..++|+||||||||+++|..|++.+ .+|+|||+++ .||.+. .|+.|
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYG--AKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTS--CCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 3579999999999999999999998 9999999984 555321 11100
Q ss_pred --CCCChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCC-C
Q 011535 67 --DHPETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRAL-G 124 (483)
Q Consensus 67 --~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~-~ 124 (483)
.......+ ...+...++..+++++.+.... ..+...++ ...||+||||||+ .|..+ +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~~ 165 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGG-KAIFPEN 165 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCE-EECCCTT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCCCC
Confidence 00111111 1223445556789988876431 12333333 3569999999998 56666 7
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
+||.+ .++++.++... . ..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 166 i~g~~--~~~~~~~~~~l----------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~ 209 (479)
T 2hqm_A 166 IPGFE--LGTDSDGFFRL----------E---EQPKKVVVVGAGYIGIELAGVFHG--------------------LG-S 209 (479)
T ss_dssp STTGG--GSBCHHHHHHC----------S---SCCSEEEEECSSHHHHHHHHHHHH--------------------TT-C
T ss_pred CCCcc--cccchHHHhcc----------c---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 88863 23444443321 0 146899999999999999999986 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+|+++.|.+.+...+. +...+.+.+.+. +.||+
T Consensus 210 ~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~Gv~ 242 (479)
T 2hqm_A 210 ETHLVIRGETVLRKFD----------------------------------ECIQNTITDHYV-------------KEGIN 242 (479)
T ss_dssp EEEEECSSSSSCTTSC----------------------------------HHHHHHHHHHHH-------------HHTCE
T ss_pred ceEEEEeCCccccccC----------------------------------HHHHHHHHHHHH-------------hCCeE
Confidence 8999999876532222 111222233333 56899
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. .++++.+..+++. +|+ +++++|.||+|+|++|+. .+. .+..|+.+++
T Consensus 243 i~~~~~v~~i~--~~~~~~~~~v~~~----------------~G~-~~i~~D~vv~a~G~~p~~--~l~-l~~~gl~~~~ 300 (479)
T 2hqm_A 243 VHKLSKIVKVE--KNVETDKLKIHMN----------------DSK-SIDDVDELIWTIGRKSHL--GMG-SENVGIKLNS 300 (479)
T ss_dssp EECSCCEEEEE--ECC-CCCEEEEET----------------TSC-EEEEESEEEECSCEEECC--CSS-GGGGTCCBCT
T ss_pred EEeCCEEEEEE--EcCCCcEEEEEEC----------------CCc-EEEEcCEEEECCCCCCcc--ccC-hhhcCceECC
Confidence 99999999997 3123322233321 232 489999999999999987 221 3567888888
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|+|.+|++ ++|+.|+|||+|||+..+.... .|+.||+.+|.+|+.
T Consensus 301 ~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 301 HDQIIADEY--QNTNVPNIYSLGDVVGKVELTP-VAIAAGRKLSNRLFG 346 (479)
T ss_dssp TSCBCCCTT--CBCSSTTEEECGGGTTSSCCHH-HHHHHHHHHHHHHHS
T ss_pred CCCEeECCC--CccCCCCEEEEEecCCCcccHH-HHHHHHHHHHHHhcC
Confidence 999999988 7899999999999976665444 799999999999974
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=266.93 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=199.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCC---------------------CCChHHHH-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD---------------------HPETKIVI- 75 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~---------------------~~~~~~~~- 75 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+. .++.|. ......+.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G--~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAK--YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 369999999999999999999999 99999998888888643 222221 11111111
Q ss_pred -----------HHHHHHHhcCCeEEEeCeEEc-----eEEEecce-e--eccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 76 -----------NQFSRVVQHERCSFFGNVTLG-----SSVSLSEL-R--QLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 76 -----------~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~-~--~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
..+...++..+++++.+.... ..+...++ . ..||+||||||+ .|..+++||.+ +++++
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~--~~~t~ 158 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGA-ETAKLRLPGVE--YCLTS 158 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCCCCTTGG--GSBCH
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCC-CccCCCCCCcc--ceEeH
Confidence 334455667789998875442 12333333 3 579999999998 67888899876 56666
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++....... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 159 ~~~~~~~~~l------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l 208 (466)
T 3l8k_A 159 DDIFGYKTSF------R---KLPQDMVIIGAGYIGLEIASIFRL--------------------MG-VQTHIIEMLDRAL 208 (466)
T ss_dssp HHHHSTTCSC------C---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSC
T ss_pred HHHHHHHHHH------h---hCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEEeCCcCC
Confidence 6554211111 0 146899999999999999999986 34 5799999987654
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..+..+++ . +.+.+.. + |+++++..+.++.
T Consensus 209 ~~~~d~~~---------------------------------~----~~l~~~l----------~--v~i~~~~~v~~i~- 238 (466)
T 3l8k_A 209 ITLEDQDI---------------------------------V----NTLLSIL----------K--LNIKFNSPVTEVK- 238 (466)
T ss_dssp TTSCCHHH---------------------------------H----HHHHHHH----------C--CCEECSCCEEEEE-
T ss_pred CCCCCHHH---------------------------------H----HHHHhcC----------E--EEEEECCEEEEEE-
Confidence 33311111 1 2222211 2 8888888888887
Q ss_pred ccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCC
Q 011535 297 SNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (483)
Q Consensus 297 ~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~ 375 (483)
. ++ +.+. +.+.. .+|+..++++|.||+|+|++|+.. + ..+..|+.++++| +.+|++
T Consensus 239 -~-~~~~~v~-v~~~~--------------~~G~~~~i~~D~vi~a~G~~p~~~--l-~l~~~gl~~~~~G-i~vd~~-- 295 (466)
T 3l8k_A 239 -K-IKDDEYE-VIYST--------------KDGSKKSIFTNSVVLAAGRRPVIP--E-GAREIGLSISKTG-IVVDET-- 295 (466)
T ss_dssp -E-EETTEEE-EEECC--------------TTSCCEEEEESCEEECCCEEECCC--T-TTGGGTCCBCSSS-BCCCTT--
T ss_pred -E-cCCCcEE-EEEEe--------------cCCceEEEEcCEEEECcCCCcccc--c-chhhcCceeCCCC-EeECCC--
Confidence 3 22 4332 33221 024445899999999999999872 2 1356788899899 999987
Q ss_pred CCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.... .|+.||+.+|.+|+.
T Consensus 296 ~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 332 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGLAPYYH-AAVRMSIAAANNIMA 332 (466)
T ss_dssp CBCSSTTEEECGGGTCSCCSHH-HHHHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEEecCCCCccHh-HHHHHHHHHHHHHhC
Confidence 7899999999999987766655 799999999999975
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=270.43 Aligned_cols=290 Identities=17% Similarity=0.177 Sum_probs=196.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eec------------------------ccCCC--CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRS------------------------GVAPD--HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~------------------------g~~p~--~~~ 70 (483)
..++|+||||||||+++|..|++.+ .+|+|||++ .+||. +.. ++... ...
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELG--ARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 3589999999999999999999999 999999987 44543 221 11110 011
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEc-----eEEEecceeeccCEEEEccCCCCCCCC---CCCCCCCC
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSELRQLYHVVVLAYGAESDRAL---GIPGEDLI 131 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~~~~yd~vvlAtG~~~~~~~---~ipg~~~~ 131 (483)
... +...+...++..+++++.+.... ..+........||+||||||+ .|..+ ++||.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~-~p~~p~~~~i~G~~-- 172 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGG-MPSTPHESQIPGAS-- 172 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCE-EECCCCTTTSTTGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCC-CCCCCCcCCCCCCc--
Confidence 111 22233444566789988776542 124433334579999999998 56666 788865
Q ss_pred CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEee
Q 011535 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (483)
Q Consensus 132 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r 211 (483)
.+.++.++.. . . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|
T Consensus 173 ~~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~ 218 (478)
T 3dk9_A 173 LGITSDGFFQ----L------E---ELPGRSVIVGAGYIAVEMAGILSA--------------------LG-SKTSLMIR 218 (478)
T ss_dssp GSBCHHHHTT----C------C---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECS
T ss_pred eeEchHHhhc----h------h---hcCccEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEe
Confidence 2233333221 0 0 136899999999999999999986 34 57999999
Q ss_pred cCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCc
Q 011535 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (483)
Q Consensus 212 ~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 291 (483)
.+.+...+. +...+.+.+.+. ++||+++++..+
T Consensus 219 ~~~~l~~~d----------------------------------~~~~~~~~~~l~-------------~~gv~i~~~~~v 251 (478)
T 3dk9_A 219 HDKVLRSFD----------------------------------SMISTNCTEELE-------------NAGVEVLKFSQV 251 (478)
T ss_dssp SSSSCTTSC----------------------------------HHHHHHHHHHHH-------------HTTCEEETTEEE
T ss_pred CCccccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEE
Confidence 876543222 111222223333 679999999999
Q ss_pred ceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc--eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeee
Q 011535 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE--FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (483)
Q Consensus 292 ~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~--~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~ 369 (483)
.++. .++++....+.+.+. .+++ +.++++|.||+|+|++|+.. .+. .+..|+.++++|++.
T Consensus 252 ~~i~--~~~~~~~~~v~~~~~-------------~~g~~~g~~~~~D~vi~a~G~~p~~~-~l~-l~~~g~~~~~~G~i~ 314 (478)
T 3dk9_A 252 KEVK--KTLSGLEVSMVTAVP-------------GRLPVMTMIPDVDCLLWAIGRVPNTK-DLS-LNKLGIQTDDKGHII 314 (478)
T ss_dssp EEEE--ECSSSEEEEEEECCT-------------TSCCEEEEEEEESEEEECSCEEESCT-TSC-GGGGTCCBCTTCCBC
T ss_pred EEEE--EcCCCcEEEEEEccC-------------CCCcccceEEEcCEEEEeeccccCCC-CCC-chhcCCeeCCCCCEe
Confidence 9987 312331122333220 0122 26899999999999999862 111 356788888999999
Q ss_pred ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 370 v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
+|++ ++|+.|+|||+|||+.++.... .|+.+|+.+|.+|+..
T Consensus 315 vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 315 VDEF--QNTNVKGIYAVGDVCGKALLTP-VAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CCTT--CBCSSTTEEECGGGGCSSCCHH-HHHHHHHHHHHHHHSC
T ss_pred eCCC--cccCCCCEEEEEecCCCCccHh-HHHHHHHHHHHHHcCC
Confidence 9987 7899999999999987676665 7999999999999753
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=264.67 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=197.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------------------------ccCC-C--CC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--------------------------GVAP-D--HP 69 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--------------------------g~~p-~--~~ 69 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||.+.. |+.. . ..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 468999999999999999999998 999999998777764211 1100 0 00
Q ss_pred ChHHH-----------HHHHHHHHhcCCeEEEeCeEEc-----eEEEecce---e------eccCEEEEccCCCCCCCCC
Q 011535 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---R------QLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~------~~yd~vvlAtG~~~~~~~~ 124 (483)
....+ ...+.+.++..+++++.++.+. ..+.+.++ . ..||+||+|||+. ++ .
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~-p~--~ 159 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSE-VT--P 159 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEE-EC--C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCC-CC--C
Confidence 11111 1123445566789998887652 12333332 3 6799999999984 42 3
Q ss_pred CCCCCCC--CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 125 IPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 125 ipg~~~~--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+||.+.. .++++.++.. +. ..+++++|||+|++|+|+|..|.+ .+
T Consensus 160 ~~g~~~~~~~v~~~~~~~~----------~~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g 206 (478)
T 1v59_A 160 FPGIEIDEEKIVSSTGALS----------LK---EIPKRLTIIGGGIIGLEMGSVYSR--------------------LG 206 (478)
T ss_dssp CTTCCCCSSSEECHHHHTT----------CS---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCCCCceEEcHHHHHh----------hh---ccCceEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 5555433 3444443321 00 136899999999999999999986 44
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|++.+...+. +.....+.+.+. +.|
T Consensus 207 -~~Vtlv~~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~g 238 (478)
T 1v59_A 207 -SKVTVVEFQPQIGASMD----------------------------------GEVAKATQKFLK-------------KQG 238 (478)
T ss_dssp -CEEEEECSSSSSSSSSC----------------------------------HHHHHHHHHHHH-------------HTT
T ss_pred -CEEEEEEeCCccccccC----------------------------------HHHHHHHHHHHH-------------HCC
Confidence 48999999876543222 111222223332 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~ 362 (483)
|++++++.+.++. .++++....+.+.+. .+++++++++|.||+|+|++|+. ..+ +.+..|+.+
T Consensus 239 v~i~~~~~v~~i~--~~~~~~~~~v~~~~~-------------~~g~~~~~~~D~vv~a~G~~p~~-~~l-~l~~~g~~~ 301 (478)
T 1v59_A 239 LDFKLSTKVISAK--RNDDKNVVEIVVEDT-------------KTNKQENLEAEVLLVAVGRRPYI-AGL-GAEKIGLEV 301 (478)
T ss_dssp CEEECSEEEEEEE--EETTTTEEEEEEEET-------------TTTEEEEEEESEEEECSCEEECC-TTS-CTTTTTCCB
T ss_pred CEEEeCCEEEEEE--EecCCCeEEEEEEEc-------------CCCCceEEECCEEEECCCCCcCC-CCC-CchhcCcee
Confidence 9999999999986 200333334444320 13445689999999999999986 111 456778888
Q ss_pred CCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 363 ~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 302 ~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 302 DKRGRLVIDDQ--FNSKFPHIKVVGDVTFGPMLAH-KAEEEGIAAVEMLKT 349 (478)
T ss_dssp CTTSCBCCCTT--SBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCEeECcC--CccCCCCEEEeeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 88999999988 7799999999999988766555 799999999999986
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=268.65 Aligned_cols=284 Identities=18% Similarity=0.217 Sum_probs=194.7
Q ss_pred CCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEe--------cCCCCCCcee-cccCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLVR-SGVAPD--------------------- 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie--------~~~~~ggl~~-~g~~p~--------------------- 67 (483)
.++|+||||||||+++|..|++ .+ .+|+||| +...+||.+. .|+.|.
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~ 84 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYG--KRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGW 84 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred ccCEEEECCChhHHHHHHHHHHhcC--CeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCc
Confidence 4799999999999999999999 88 9999999 2445666432 222110
Q ss_pred -------CCChHHHHH-----------HHHHHHhcC-CeEEEeCeEEc---eEEEec---------ceeeccCEEEEccC
Q 011535 68 -------HPETKIVIN-----------QFSRVVQHE-RCSFFGNVTLG---SSVSLS---------ELRQLYHVVVLAYG 116 (483)
Q Consensus 68 -------~~~~~~~~~-----------~~~~~~~~~-~v~~~~~~~v~---~~~~~~---------~~~~~yd~vvlAtG 116 (483)
......+.. .+...++.. +++++.+.... ..+.+. .....||+||||||
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATG 164 (495)
T 2wpf_A 85 EFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATG 164 (495)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCC
Confidence 111122221 223344566 89998886432 234443 22357999999999
Q ss_pred CCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHH
Q 011535 117 AESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196 (483)
Q Consensus 117 ~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~ 196 (483)
+ .|..|++||.+ .++++.++... . ..+++++|||+|.+|+|+|..|.+
T Consensus 165 s-~p~~p~i~G~~--~~~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~---------------- 212 (495)
T 2wpf_A 165 S-WPQMPAIPGIE--HCISSNEAFYL----------P---EPPRRVLTVGGGFISVEFAGIFNA---------------- 212 (495)
T ss_dssp E-EECCCCCTTGG--GCEEHHHHTTC----------S---SCCSEEEEECSSHHHHHHHHHHHH----------------
T ss_pred C-CcCCCCCCCcc--ccccHHHHHhh----------h---hcCCeEEEECCCHHHHHHHHHHHh----------------
Confidence 8 57777888863 34554443211 0 146899999999999999999875
Q ss_pred HHhcC--CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCC
Q 011535 197 ALEGS--SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASS 274 (483)
Q Consensus 197 ~l~~~--~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~ 274 (483)
. ...+|+++.|.+.+...|.. .....+.+.+.
T Consensus 213 ----~~~~g~~Vtlv~~~~~~l~~~d~----------------------------------~~~~~l~~~l~-------- 246 (495)
T 2wpf_A 213 ----YKPPGGKVTLCYRNNLILRGFDE----------------------------------TIREEVTKQLT-------- 246 (495)
T ss_dssp ----HCCTTCEEEEEESSSSSCTTSCH----------------------------------HHHHHHHHHHH--------
T ss_pred ----hCCCCCeEEEEEcCCccccccCH----------------------------------HHHHHHHHHHH--------
Confidence 2 13589999998765432221 11222223333
Q ss_pred CCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc
Q 011535 275 QPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354 (483)
Q Consensus 275 ~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~ 354 (483)
++||+++++..+.++. . +++....+++. +| ++++||.||+|+|++|+.- .+ .
T Consensus 247 -----~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~G--~~i~~D~vv~a~G~~p~~~-~L-~ 298 (495)
T 2wpf_A 247 -----ANGIEIMTNENPAKVS--L-NTDGSKHVTFE----------------SG--KTLDVDVVMMAIGRIPRTN-DL-Q 298 (495)
T ss_dssp -----HTTCEEEESCCEEEEE--E-CTTSCEEEEET----------------TS--CEEEESEEEECSCEEECCG-GG-T
T ss_pred -----hCCCEEEeCCEEEEEE--E-cCCceEEEEEC----------------CC--cEEEcCEEEECCCCccccc-cc-c
Confidence 6799999999999997 3 22222233321 23 3799999999999999861 11 1
Q ss_pred cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 355 ~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.++++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 299 l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 299 LGNVGVKLTPKGGVQVDEF--SRTNVPNIYAIGDITDRLMLTP-VAINEGAALVDTVFG 354 (495)
T ss_dssp GGGTTCCBCTTSSBCCCTT--CBCSSTTEEECGGGGCSCCCHH-HHHHHHHHHHHHHHS
T ss_pred hhhcCccCCCCCCEEECCC--CccCCCCEEEEeccCCCccCHH-HHHHHHHHHHHHhcC
Confidence 3567888888999999987 7899999999999987665444 799999999999974
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=271.90 Aligned_cols=287 Identities=15% Similarity=0.166 Sum_probs=191.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ec------------------------ccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RS------------------------GVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~------------------------g~~p~--~~~~ 71 (483)
.++|+||||||||++||..|++.+ .+|+|||+++ +||.. .. |+.+. ....
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G--~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHT--DKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTC--SCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence 479999999999999999999999 9999999976 55532 21 22111 0122
Q ss_pred HHHHHHHHH-----------HHhc-CCeEEEeCeEE---ceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 011535 72 KIVINQFSR-----------VVQH-ERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (483)
Q Consensus 72 ~~~~~~~~~-----------~~~~-~~v~~~~~~~v---~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~ 135 (483)
.++...+.+ .... .+++++.+... ...+.+.+. ...||+||||||+ .|..|++++.....+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs-~p~~p~~~~~~~~~v~t 163 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGS-RPNYPEFLAAAGSRLLT 163 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCE-ECCCCHHHHTTGGGEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCC-CCcCCCCCCccCCcEEc
Confidence 222222211 1111 12333333221 223455333 3579999999998 56666666554456666
Q ss_pred cceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 136 a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+.++..+ . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+
T Consensus 164 ~~~~~~~------------~-~~~k~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~ 209 (492)
T 3ic9_A 164 NDNLFEL------------N-DLPKSVAVFGPGVIGLELGQALSR--------------------LG-VIVKVFGRSGSV 209 (492)
T ss_dssp HHHHTTC------------S-SCCSEEEEESSCHHHHHHHHHHHH--------------------TT-CEEEEECCTTCC
T ss_pred HHHHhhh------------h-hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEECCcc
Confidence 6554321 0 146899999999999999999986 34 579999998765
Q ss_pred cccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceee
Q 011535 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (483)
Q Consensus 216 ~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~ 295 (483)
...+.. ...+.+.+.|. +. |+++++..+.++.
T Consensus 210 l~~~d~----------------------------------~~~~~l~~~l~-------------~~-V~i~~~~~v~~i~ 241 (492)
T 3ic9_A 210 ANLQDE----------------------------------EMKRYAEKTFN-------------EE-FYFDAKARVISTI 241 (492)
T ss_dssp TTCCCH----------------------------------HHHHHHHHHHH-------------TT-SEEETTCEEEEEE
T ss_pred cccCCH----------------------------------HHHHHHHHHHh-------------hC-cEEEECCEEEEEE
Confidence 432221 11222223332 44 9999999999987
Q ss_pred cccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeec-CCC
Q 011535 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN-ISG 374 (483)
Q Consensus 296 ~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~-~~~ 374 (483)
. +++.+. +.+.+ .+|+..++++|.||+|+|++|+.. .+. .+..|+.++++|++.+| ++
T Consensus 242 --~-~~~~v~-v~~~~--------------~~G~~~~i~~D~Vi~a~G~~p~~~-~l~-l~~~gl~~~~~G~i~vd~~~- 300 (492)
T 3ic9_A 242 --E-KEDAVE-VIYFD--------------KSGQKTTESFQYVLAATGRKANVD-KLG-LENTSIELDKKNSPLFDELT- 300 (492)
T ss_dssp --E-CSSSEE-EEEEC--------------TTCCEEEEEESEEEECSCCEESCS-SSC-GGGSCCCBCTTCCBCCCTTT-
T ss_pred --E-cCCEEE-EEEEe--------------CCCceEEEECCEEEEeeCCccCCC-CCC-hhhcCCEECCCCCEeECccc-
Confidence 4 234332 33321 134446899999999999999861 111 46678899999999999 66
Q ss_pred CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++|+.|+|||+|||+.++.... .|+.||+.+|.+|...
T Consensus 301 -~~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~~ 338 (492)
T 3ic9_A 301 -LQTSVDHIFVAGDANNTLTLLH-EAADDGKVAGTNAGAY 338 (492)
T ss_dssp -CBCSSTTEEECGGGGTSSCSHH-HHHHHHHHHHHHHHHT
T ss_pred -ccCCCCCEEEEEecCCCCccHH-HHHHHHHHHHHHHcCC
Confidence 7899999999999987666555 7999999999999874
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=266.65 Aligned_cols=284 Identities=18% Similarity=0.252 Sum_probs=194.6
Q ss_pred CCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEe--------cCCCCCCce-ecccCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLV-RSGVAPD--------------------- 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie--------~~~~~ggl~-~~g~~p~--------------------- 67 (483)
.++|+||||||||+++|..|++ .+ .+|+||| +...+||.+ ..|+.|.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 80 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHK--KRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW 80 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcC--CEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 5799999999999999999999 88 9999999 245566642 2222121
Q ss_pred -------CCChHHHH-----------HHHHHHHhcC-CeEEEeCeEEc---eEEEec-----ce----eeccCEEEEccC
Q 011535 68 -------HPETKIVI-----------NQFSRVVQHE-RCSFFGNVTLG---SSVSLS-----EL----RQLYHVVVLAYG 116 (483)
Q Consensus 68 -------~~~~~~~~-----------~~~~~~~~~~-~v~~~~~~~v~---~~~~~~-----~~----~~~yd~vvlAtG 116 (483)
......+. ..+...++.. +++++.+.... ..+.+. ++ ...||+||||||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtG 160 (490)
T 1fec_A 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG 160 (490)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence 11112221 2334455667 99998887542 134442 23 357999999999
Q ss_pred CCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHH
Q 011535 117 AESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196 (483)
Q Consensus 117 ~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~ 196 (483)
+ .|..+++||.+ .++++.++... . ..+++++|||+|++|+|+|..|.+
T Consensus 161 s-~p~~p~i~g~~--~~~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~---------------- 208 (490)
T 1fec_A 161 S-WPQHLGIEGDD--LCITSNEAFYL----------D---EAPKRALCVGGGYISIEFAGIFNA---------------- 208 (490)
T ss_dssp E-EECCCCSBTGG--GCBCHHHHTTC----------S---SCCSEEEEECSSHHHHHHHHHHHH----------------
T ss_pred C-CCCCCCCCCcc--ceecHHHHhhh----------h---hcCCeEEEECCCHHHHHHHHHHHh----------------
Confidence 8 57777788763 34444333210 0 146899999999999999999875
Q ss_pred HHhcC--CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCC
Q 011535 197 ALEGS--SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASS 274 (483)
Q Consensus 197 ~l~~~--~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~ 274 (483)
. ...+|+++.|.+.+...+. +...+.+.+.+.
T Consensus 209 ----~~~~g~~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------- 242 (490)
T 1fec_A 209 ----YKARGGQVDLAYRGDMILRGFD----------------------------------SELRKQLTEQLR-------- 242 (490)
T ss_dssp ----HSCTTCEEEEEESSSSSSTTSC----------------------------------HHHHHHHHHHHH--------
T ss_pred ----hccCcCeEEEEEcCCCcccccC----------------------------------HHHHHHHHHHHH--------
Confidence 2 1358999999876432222 111222223332
Q ss_pred CCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc
Q 011535 275 QPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354 (483)
Q Consensus 275 ~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~ 354 (483)
+.||+++++..+.++. . +++....+++. +| +++++|.||+|+|++|+.- .+ .
T Consensus 243 -----~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~G--~~i~~D~vv~a~G~~p~~~-~L-~ 294 (490)
T 1fec_A 243 -----ANGINVRTHENPAKVT--K-NADGTRHVVFE----------------SG--AEADYDVVMLAIGRVPRSQ-TL-Q 294 (490)
T ss_dssp -----HTTEEEEETCCEEEEE--E-CTTSCEEEEET----------------TS--CEEEESEEEECSCEEESCT-TS-C
T ss_pred -----hCCCEEEeCCEEEEEE--E-cCCCEEEEEEC----------------CC--cEEEcCEEEEccCCCcCcc-cc-C
Confidence 6799999999999997 3 22222223221 23 3799999999999999861 11 1
Q ss_pred cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 355 ~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.++++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 295 l~~~gl~~~~~G~I~Vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 295 LEKAGVEVAKNGAIKVDAY--SKTNVDNIYAIGDVTDRVMLTP-VAINEGAAFVDTVFA 350 (490)
T ss_dssp GGGGTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGCSCCCHH-HHHHHHHHHHHHHHS
T ss_pred chhcCccCCCCCCEEECCC--CccCCCCEEEEeccCCCccCHH-HHHHHHHHHHHHhcC
Confidence 3567888888999999987 7899999999999987665444 799999999999974
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=260.87 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=195.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-c-------------------------ccCCCCC--
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-S-------------------------GVAPDHP-- 69 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~-------------------------g~~p~~~-- 69 (483)
..++|+||||||||+++|..|++.+ .+|+|||++ .+||.+. . |+.+...
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQG--AQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence 3579999999999999999999998 999999998 4555321 1 2211111
Q ss_pred ChHHHH-------HH-----HHHHHhcC-CeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCCCCCCCC
Q 011535 70 ETKIVI-------NQ-----FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 70 ~~~~~~-------~~-----~~~~~~~~-~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
....+. .. +.+.++.. +++++.+.... ..+...++ ...||+||||||+ .|+.|++||.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~G~ 158 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGA-SPAVPPIPGL 158 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCE-EECCCCCTTT
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCC-CCCCCCCCCC
Confidence 122221 11 23445566 89988775431 12333333 3569999999998 6777889997
Q ss_pred CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEE
Q 011535 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (483)
Q Consensus 129 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~l 208 (483)
+..++++..++... . ..+++++|||+|++|+|+|..|.+ .+ .+|++
T Consensus 159 ~~~~~~~~~~~~~~----------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtl 204 (467)
T 1zk7_A 159 KESPYWTSTEALAS----------D---TIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTV 204 (467)
T ss_dssp TTSCCBCHHHHHHC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEE
T ss_pred CcCceecHHHHhcc----------c---ccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 65556655544321 0 146899999999999999999986 34 47999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeec
Q 011535 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (483)
Q Consensus 209 i~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 288 (483)
+.|.+.+.. +. +...+.+.+.+. +.||+++++
T Consensus 205 v~~~~~~l~-~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~ 236 (467)
T 1zk7_A 205 LARNTLFFR-ED----------------------------------PAIGEAVTAAFR-------------AEGIEVLEH 236 (467)
T ss_dssp ECSSCTTTT-SC----------------------------------HHHHHHHHHHHH-------------HTTCEEETT
T ss_pred EEECCccCC-CC----------------------------------HHHHHHHHHHHH-------------hCCCEEEcC
Confidence 999875432 21 111222223332 678999999
Q ss_pred CCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCee
Q 011535 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (483)
Q Consensus 289 ~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v 368 (483)
..+.++. . ++....+.+ .+ .++++|.||+|+|++|+.- .+ ..+..|+.++++|++
T Consensus 237 ~~v~~i~--~--~~~~~~v~~-----------------~~--~~i~aD~Vv~a~G~~p~~~-~l-~l~~~gl~~~~~G~i 291 (467)
T 1zk7_A 237 TQASQVA--H--MDGEFVLTT-----------------TH--GELRADKLLVATGRTPNTR-SL-ALDAAGVTVNAQGAI 291 (467)
T ss_dssp CCEEEEE--E--ETTEEEEEE-----------------TT--EEEEESEEEECSCEEESCT-TS-CGGGGTCCBCTTSCB
T ss_pred CEEEEEE--E--eCCEEEEEE-----------------CC--cEEEcCEEEECCCCCcCCC-cC-CchhcCCcCCCCCCE
Confidence 9999987 3 222222221 11 3799999999999999761 11 235667888888999
Q ss_pred eecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 369 ~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+|++ ++|+.|+|||+|||+..+.... .|+.||+.+|.+|..
T Consensus 292 ~vd~~--~~t~~~~iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 292 VIDQG--MRTSNPNIYAAGDCTDQPQFVY-VAAAAGTRAAINMTG 333 (467)
T ss_dssp CCCTT--CBCSSTTEEECSTTBSSCCCHH-HHHHHHHHHHHHHTT
T ss_pred EECCC--cccCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHHcC
Confidence 99987 7899999999999988776665 799999999999864
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=269.30 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=189.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC--ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG--LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg--l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+|||||+||++||..|.+.+ .+|+|||+++.++. .......++....+++.....+++++.+++++.++.+
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V 85 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA 85 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence 4679999999999999999995544 99999999987531 1111111233333444444556666789999988655
Q ss_pred c------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCC
Q 011535 96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (483)
Q Consensus 96 ~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G 168 (483)
. +.+++.++. ..||+||||||+ .|+.+++||.+ ++++...+....... ..+..+++|+|||+|
T Consensus 86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~-~p~~p~i~G~~--~v~~~~~~~d~~~l~-------~~l~~~~~vvVIGgG 155 (385)
T 3klj_A 86 TSIDPNNKLVTLKSGEKIKYEKLIIASGS-IANKIKVPHAD--EIFSLYSYDDALKIK-------DECKNKGKAFIIGGG 155 (385)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTCS--CEECCSSHHHHHHHH-------HHHHHHSCEEEECCS
T ss_pred EEEECCCCEEEECCCCEEECCEEEEecCC-CcCCCCCCCCC--CeEEeCCHHHHHHHH-------HHhhcCCeEEEECCC
Confidence 2 245666553 479999999999 68888899987 666544332211000 001126899999999
Q ss_pred chHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCc
Q 011535 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (483)
Q Consensus 169 ~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 248 (483)
++|+|+|..|.+ .+ .+|+++.|.+.+......+
T Consensus 156 ~~g~E~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~~~~-------------------------- 188 (385)
T 3klj_A 156 ILGIELAQAIID--------------------SG-TPASIGIILEYPLERQLDR-------------------------- 188 (385)
T ss_dssp HHHHHHHHHHHH--------------------HT-CCEEEECSSSSSCTTTSCH--------------------------
T ss_pred HHHHHHHHHHHh--------------------CC-CeEEEEEcCCccchhhcCH--------------------------
Confidence 999999999985 33 5799999987654321111
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCC
Q 011535 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (483)
Q Consensus 249 ~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g 328 (483)
...+.+.+.+. +.||+++++..+.++-
T Consensus 189 -------~~~~~~~~~l~-------------~~gV~~~~~~~v~~ig--------------------------------- 215 (385)
T 3klj_A 189 -------DGGLFLKDKLD-------------RLGIKIYTNSNFEEMG--------------------------------- 215 (385)
T ss_dssp -------HHHHHHHHHHH-------------TTTCEEECSCCGGGCH---------------------------------
T ss_pred -------HHHHHHHHHHH-------------hCCCEEEeCCEEEEcC---------------------------------
Confidence 11112223332 6788888766554431
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCC---cchhHhhHHHHH
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAE 405 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~---~~~~~~a~~~g~ 405 (483)
++++||+||+|+|++|+. +|.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+ .+....|+.||+
T Consensus 216 --~~~~~D~vv~a~G~~p~~----~~~~~~gl~~~-~g-i~vd~~--~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~ 285 (385)
T 3klj_A 216 --DLIRSSCVITAVGVKPNL----DFIKDTEIASK-RG-ILVNDH--METSIKDIYACGDVAEFYGKNPGLINIANKQGE 285 (385)
T ss_dssp --HHHHHSEEEECCCEEECC----GGGTTSCCCBS-SS-EEECTT--CBCSSTTEEECGGGEEETTBCCCCHHHHHHHHH
T ss_pred --eEEecCeEEECcCcccCh----hhhhhcCCCcC-CC-EEECCC--cccCCCCEEEEEeeEecCCCcccHHHHHHHHHH
Confidence 268999999999999986 46677788775 56 888887 789999999999998622 234447999999
Q ss_pred HHHHHHHH
Q 011535 406 ETVASISE 413 (483)
Q Consensus 406 ~~a~~I~~ 413 (483)
.+|.+|+.
T Consensus 286 ~aa~~i~g 293 (385)
T 3klj_A 286 VAGLNACG 293 (385)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99999975
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=265.74 Aligned_cols=283 Identities=16% Similarity=0.110 Sum_probs=198.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCCCce-ec------------------------ccC--CC--C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLV-RS------------------------GVA--PD--H 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~ggl~-~~------------------------g~~--p~--~ 68 (483)
.++|+|||||+||+++|..|++..| +.+|+|||+.+ +||.. .+ |+. .+ .
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 3689999999999999999999922 39999999988 66532 11 220 00 0
Q ss_pred CChHHH-----------HHHHHHHHhcCCeEEEeCeEEc---------eE--EEecce---eeccCEEEEccCCCCCCCC
Q 011535 69 PETKIV-----------INQFSRVVQHERCSFFGNVTLG---------SS--VSLSEL---RQLYHVVVLAYGAESDRAL 123 (483)
Q Consensus 69 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~---------~~--~~~~~~---~~~yd~vvlAtG~~~~~~~ 123 (483)
.....+ ...+.+.++..+++++.+.... .. +...++ ...||+||+|||+ .+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs-~p~~p 159 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA-SPRIL 159 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE-EECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCC
Confidence 112222 2234556667789998886531 22 222333 3579999999998 57777
Q ss_pred CCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc
Q 011535 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (483)
Q Consensus 124 ~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~ 203 (483)
+++|.+..++++..++... . ..+++++|||+|.+|+|+|..|.+ .+
T Consensus 160 ~i~g~~~~~v~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~g- 205 (499)
T 1xdi_A 160 PSAQPDGERILTWRQLYDL----------D---ALPDHLIVVGSGVTGAEFVDAYTE--------------------LG- 205 (499)
T ss_dssp GGGCCCSSSEEEGGGGGGC----------S---SCCSSEEEESCSHHHHHHHHHHHH--------------------TT-
T ss_pred CCCCCCcCcEEehhHhhhh----------h---ccCCeEEEECCCHHHHHHHHHHHH--------------------cC-
Confidence 8888876677766554321 0 135899999999999999999885 34
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceE
Q 011535 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (483)
Q Consensus 204 ~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i 283 (483)
.+|+++.+.+.+...+. +...+.+.+.+. +.||
T Consensus 206 ~~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~GV 238 (499)
T 1xdi_A 206 VPVTVVASQDHVLPYED----------------------------------ADAALVLEESFA-------------ERGV 238 (499)
T ss_dssp CCEEEECSSSSSSCCSS----------------------------------HHHHHHHHHHHH-------------HTTC
T ss_pred CeEEEEEcCCccccccC----------------------------------HHHHHHHHHHHH-------------HCCC
Confidence 47999998876532222 112222223333 6799
Q ss_pred EEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc--cCCCCcc
Q 011535 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKGIV 361 (483)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~--~~~~g~~ 361 (483)
+++++..+.++. . +++.+ .+++ ++++++++|.||+|+|++|+. ++ .+..|+.
T Consensus 239 ~i~~~~~V~~i~--~-~~~~v-~v~~------------------~~g~~i~aD~Vv~a~G~~p~~----~~l~l~~~gl~ 292 (499)
T 1xdi_A 239 RLFKNARAASVT--R-TGAGV-LVTM------------------TDGRTVEGSHALMTIGSVPNT----SGLGLERVGIQ 292 (499)
T ss_dssp EEETTCCEEEEE--E-CSSSE-EEEE------------------TTSCEEEESEEEECCCEEECC----SSSCTTTTTCC
T ss_pred EEEeCCEEEEEE--E-eCCEE-EEEE------------------CCCcEEEcCEEEECCCCCcCC----CcCCchhcCce
Confidence 999999999997 4 23333 1221 122479999999999999986 23 4667888
Q ss_pred cCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 362 ~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++++|+|.+|++ ++|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 293 ~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 293 LGRGNYLTVDRV--SRTLATGIYAAGDCTGLLPLAS-VAAMQGRIAMYHALG 341 (499)
T ss_dssp CBTTTBCCCCSS--SBCSSTTEEECSGGGTSCSCHH-HHHHHHHHHHHHHTT
T ss_pred ECCCCCEEECCC--cccCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 888899999988 7899999999999987665444 799999999999974
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=268.04 Aligned_cols=282 Identities=11% Similarity=0.159 Sum_probs=192.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCC---------------------------CCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD---------------------------HPE 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~---------------------------~~~ 70 (483)
.++|+||||||||+++|..|++.+ .+|+|||++ ..||.+. .|+.|. ...
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN 80 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 479999999999999999999988 999999998 4565421 111111 001
Q ss_pred hHHH-----------HHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 71 TKIV-----------INQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 71 ~~~~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
...+ ...+...+...+++++.+.... ..+.++.....||+||||||+ .|..|++||.+ .++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~g~~--~~~~~ 157 (450)
T 1ges_A 81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPDIPGVE--YGIDS 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCCSTTGG--GSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcc--ceecH
Confidence 1111 1223344566789998876532 234443334579999999998 57777788863 34444
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 158 ~~~~~~----------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l 203 (450)
T 1ges_A 158 DGFFAL----------P---ALPERVAVVGAGYIGVELGGVING--------------------LG-AKTHLFEMFDAPL 203 (450)
T ss_dssp HHHHHC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSS
T ss_pred HHhhhh----------h---hcCCeEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEeCCchh
Confidence 443321 0 136899999999999999999986 34 5899999886543
Q ss_pred ccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 217 ~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
..|. +...+.+.+.+. +.||+++++..+.++.
T Consensus 204 ~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~- 235 (450)
T 1ges_A 204 PSFD----------------------------------PMISETLVEVMN-------------AEGPQLHTNAIPKAVV- 235 (450)
T ss_dssp TTSC----------------------------------HHHHHHHHHHHH-------------HHSCEEECSCCEEEEE-
T ss_pred hhhh----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE-
Confidence 2222 111222233333 5689999999999997
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~ 376 (483)
. +++....+++. +| +++++|.||+|+|++|+. ..+ ..+..|+.++++|+|.+|++ +
T Consensus 236 -~-~~~~~~~v~~~----------------~g--~~i~~D~vv~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~~--~ 291 (450)
T 1ges_A 236 -K-NTDGSLTLELE----------------DG--RSETVDCLIWAIGREPAN-DNI-NLEAAGVKTNEKGYIVVDKY--Q 291 (450)
T ss_dssp -E-CTTSCEEEEET----------------TS--CEEEESEEEECSCEEESC-TTS-CHHHHTCCBCTTSCBCCCTT--S
T ss_pred -E-eCCcEEEEEEC----------------CC--cEEEcCEEEECCCCCcCC-CCC-CchhcCceECCCCCEeECCC--C
Confidence 3 22221123221 23 379999999999999976 111 13456788888999999998 7
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|+.|+|||+|||+..+.... .|+.||+.+|.+|..
T Consensus 292 ~t~~~~IyA~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 292 NTNIEGIYAVGDNTGAVELTP-VAVAAGRRLSERLFN 327 (450)
T ss_dssp BCSSTTEEECSGGGTSCCCHH-HHHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEeccCCCCccHH-HHHHHHHHHHHHHcC
Confidence 799999999999986665444 799999999999974
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=267.89 Aligned_cols=294 Identities=16% Similarity=0.159 Sum_probs=187.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCC-CChHH-------HHHHHHHHHhcCCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETKI-------VINQFSRVVQHERC 87 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~-~~~~~-------~~~~~~~~~~~~~v 87 (483)
+++|+|||||+||++||..|++.+++.+|+|||+++.++. ...++ .++. ....+ +..+...+.+..++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~-~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi 81 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISY-GGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDV 81 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--------------------------------------------C
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccc-cccccchhhcCCCCchHHhccccchhccCHHHHhhhcCc
Confidence 4799999999999999999999955599999999987531 11111 0111 11112 23334444445788
Q ss_pred EEEeCeEEce------EEEecc---e---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCC
Q 011535 88 SFFGNVTLGS------SVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPD 155 (483)
Q Consensus 88 ~~~~~~~v~~------~~~~~~---~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 155 (483)
+++.+..+.. .+.+.+ + ...||+||+|||+ .+..+++||.+.+++++...+........ .+.
T Consensus 82 ~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~---~l~-- 155 (472)
T 3iwa_A 82 EALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS-KANRPPVEGMDLAGVTPVTNLDEAEFVQH---AIS-- 155 (472)
T ss_dssp EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCSCTTTTSBTEEECCSHHHHHHHHH---HCC--
T ss_pred EEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC-CcCCCCCCCCCCCCEEEeCCHHHHHHHHH---Hhh--
Confidence 8888776632 233332 2 3469999999998 67788899988777765543321110000 000
Q ss_pred CCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeE
Q 011535 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (483)
Q Consensus 156 ~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~ 235 (483)
...+++++|||+|++|+|+|..|.+ ....+|+++.|.+.+......+
T Consensus 156 ~~~~~~vvViGgG~~g~e~A~~l~~--------------------~~g~~Vtlv~~~~~~l~~~~~~------------- 202 (472)
T 3iwa_A 156 AGEVSKAVIVGGGFIGLEMAVSLAD--------------------MWGIDTTVVELADQIMPGFTSK------------- 202 (472)
T ss_dssp TTSCSEEEEECCSHHHHHHHHHHHH--------------------HHCCEEEEECSSSSSSTTTSCH-------------
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHH--------------------hcCCcEEEEEccCcccccccCH-------------
Confidence 0146899999999999999999885 3135899999987553211111
Q ss_pred EeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeee
Q 011535 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (483)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~ 315 (483)
.....+.+.+. +.||+++++..+.++. . +++.+. +.+.
T Consensus 203 --------------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~-v~~~----- 240 (472)
T 3iwa_A 203 --------------------SLSQMLRHDLE-------------KNDVVVHTGEKVVRLE--G-ENGKVA-RVIT----- 240 (472)
T ss_dssp --------------------HHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E-SSSBEE-EEEE-----
T ss_pred --------------------HHHHHHHHHHH-------------hcCCEEEeCCEEEEEE--c-cCCeEE-EEEe-----
Confidence 11222223332 6799999999999997 3 355443 3332
Q ss_pred CCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT- 394 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~- 394 (483)
+| ++++||.||+|+|++|+. ++....|+.++++|++.+|++ ++|+.|+|||+|||+..+.
T Consensus 241 -----------~g--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~~~g~i~vd~~--~~t~~~~Iya~GD~~~~~~~ 301 (472)
T 3iwa_A 241 -----------DK--RTLDADLVILAAGVSPNT----QLARDAGLELDPRGAIIVDTR--MRTSDPDIFAGGDCVTIPNL 301 (472)
T ss_dssp -----------SS--CEEECSEEEECSCEEECC----HHHHHHTCCBCTTCCEECCTT--CBCSSTTEEECGGGEEEEBT
T ss_pred -----------CC--CEEEcCEEEECCCCCcCH----HHHHhCCccCCCCCCEEECCC--cccCCCCEEEeccceecccc
Confidence 22 379999999999999986 344566888888999999987 7899999999999984211
Q ss_pred --------chhHhhHHHHHHHHHHHHH
Q 011535 395 --------GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 --------~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|+.
T Consensus 302 ~~g~~~~~~~~~~A~~~g~~aa~~i~g 328 (472)
T 3iwa_A 302 VTGKPGFFPLGSMANRQGRVIGTNLAD 328 (472)
T ss_dssp TTSSEECCCCTTHHHHHHHHHHHHHTT
T ss_pred cCCceeecchHHHHHHHHHHHHHHhcC
Confidence 1223699999999999874
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=273.07 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=197.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCC-CChH-HHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETK-IVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~-~~~~-~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
++|+||||||||++||..|++.+++.+|+|||+.+.++. ...++ .++. .... .+...+..+.++.+++++.+..
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF-ANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 689999999999999999999966699999999987641 11111 0111 1111 2223344445556899888877
Q ss_pred Ece------EEEecc---e---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 95 LGS------SVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 95 v~~------~~~~~~---~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
+.. .+.+.+ + ...||+||||||+ .++.+++||.+..++++...+..... ... .+ ....+++|
T Consensus 81 V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~ipG~~~~~v~~~~~~~~~~~-l~~--~~--~~~~~~~v 154 (565)
T 3ntd_A 81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDMDR-ILQ--TI--QMNNVEHA 154 (565)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTCCSTTEECCSSHHHHHH-HHH--HH--HHTTCSEE
T ss_pred EEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHH-HHH--HH--hhCCCCEE
Confidence 632 333332 2 3469999999999 68888999988777776554321100 000 00 00146899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ .+|+++.|++.+...+..
T Consensus 155 vViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~--------------------- 192 (565)
T 3ntd_A 155 TVVGGGFIGLEMMESLHH--------------------LG-IKTTLLELADQVMTPVDR--------------------- 192 (565)
T ss_dssp EEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSCTTSCH---------------------
T ss_pred EEECCCHHHHHHHHHHHh--------------------cC-CcEEEEEcCCccchhcCH---------------------
Confidence 999999999999999986 34 579999998765432221
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.....+.+.+. ++||+++++..+.++. .+.++.+...............+..
T Consensus 193 -------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (565)
T 3ntd_A 193 -------------EMAGFAHQAIR-------------DQGVDLRLGTALSEVS--YQVQTHVASDAAGEDTAHQHIKGHL 244 (565)
T ss_dssp -------------HHHHHHHHHHH-------------HTTCEEEETCCEEEEE--EECCCCCCCGGGTCCCTTCCTTCEE
T ss_pred -------------HHHHHHHHHHH-------------HCCCEEEeCCeEEEEe--ccccccccccccccccccccCCCcE
Confidence 11112223332 6799999999999887 2101110000000000000000110
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC------CCc--
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------GPT-- 394 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~------g~~-- 394 (483)
..+ ..++++++||.||+|+|++|++ ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+. |..
T Consensus 245 ~v~-~~~g~~i~~D~vi~a~G~~p~~----~l~~~~g~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~ 317 (565)
T 3ntd_A 245 SLT-LSNGELLETDLLIMAIGVRPET----QLARDAGLAIGELGGIKVNAM--MQTSDPAIYAVGDAVEEQDFVTGQACL 317 (565)
T ss_dssp EEE-ETTSCEEEESEEEECSCEEECC----HHHHHHTCCBCTTSSBCCCTT--CBCSSTTEEECGGGBCEEBTTTCCEEC
T ss_pred EEE-EcCCCEEEcCEEEECcCCccch----HHHHhCCcccCCCCCEEECCC--cccCCCCEEEeeeeEeeccccCCceee
Confidence 011 1122389999999999999986 354566888888999999987 7899999999999974 221
Q ss_pred -chhHhhHHHHHHHHHHHHH
Q 011535 395 -GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 -~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|+.
T Consensus 318 ~~~~~~A~~~g~~aa~~i~g 337 (565)
T 3ntd_A 318 VPLAGPANRQGRMAADNMFG 337 (565)
T ss_dssp CCCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhcC
Confidence 1233689999999999974
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=264.79 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=193.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-ecccCCC-------------------------CCChH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPD-------------------------HPETK 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~~g~~p~-------------------------~~~~~ 72 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+ .||.+ ..++.|. .....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g--~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLG--LKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 478999999999999999999998 9999999987 55532 1121111 01111
Q ss_pred HHHH-----------HHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCC-CCCCCCCCeeecc
Q 011535 73 IVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGVHSAR 137 (483)
Q Consensus 73 ~~~~-----------~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~-ipg~~~~~v~~a~ 137 (483)
.+.. .+...++..+++++.+..+. ..+.+......||+||||||+ .|..++ +++. ..++++.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs-~p~~p~gi~~~--~~v~~~~ 159 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGS-EPLELKGFPFG--EDVWDST 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCBTTBCCS--SSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCC-CCCCCCCCCCC--CcEEcHH
Confidence 1111 13345566789998887542 234443233579999999998 455543 6662 2455554
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++...- +. .+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.+..
T Consensus 160 ~~~~l~-----------~~-~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~ 206 (464)
T 2eq6_A 160 RALKVE-----------EG-LPKRLLVIGGGAVGLELGQVYRR--------------------LG-AEVTLIEYMPEILP 206 (464)
T ss_dssp HHTCGG-----------GC-CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSST
T ss_pred HHHhhh-----------hh-cCCEEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEEcCCcccc
Confidence 433110 00 35899999999999999999886 44 48999999875432
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +...+.+.+.+. +.||+++++..+.++.
T Consensus 207 ~~~----------------------------------~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~-- 237 (464)
T 2eq6_A 207 QGD----------------------------------PETAALLRRALE-------------KEGIRVRTKTKAVGYE-- 237 (464)
T ss_dssp TSC----------------------------------HHHHHHHHHHHH-------------HTTCEEECSEEEEEEE--
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------hcCCEEEcCCEEEEEE--
Confidence 211 111222223332 6789999999999997
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. +++.+ .+++.. + .+|+..++++|.||+|+|++|+.- .+ ..+..|+.++++|++.+|++ ++
T Consensus 238 ~-~~~~~-~v~~~~-----~--------~~g~~~~i~~D~vv~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~vd~~--~~ 298 (464)
T 2eq6_A 238 K-KKDGL-HVRLEP-----A--------EGGEGEEVVVDKVLVAVGRKPRTE-GL-GLEKAGVKVDERGFIRVNAR--ME 298 (464)
T ss_dssp E-ETTEE-EEEEEE-----T--------TCCSCEEEEESEEEECSCEEESCT-TS-SHHHHTCCBCTTSCBCCCTT--CB
T ss_pred E-eCCEE-EEEEee-----c--------CCCceeEEEcCEEEECCCcccCCC-CC-ChhhcCceecCCCCEEECCC--cc
Confidence 3 23322 233321 0 013334899999999999999861 11 13456778888899999987 77
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+.++.... .|+.||+.+|.+|..
T Consensus 299 t~~~~Iya~GD~~~~~~l~~-~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 299 TSVPGVYAIGDAARPPLLAH-KAMREGLIAAENAAG 333 (464)
T ss_dssp CSSTTEEECGGGTCSSCCHH-HHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 99999999999987666555 799999999999974
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=259.08 Aligned_cols=290 Identities=15% Similarity=0.200 Sum_probs=197.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CC-ceecccCCCCCChHHHHH-HHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FG-LVRSGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-gg-l~~~g~~p~~~~~~~~~~-~~~~~~~~~~v~~~~~~~v 95 (483)
.++|+|||||+||+++|..|++.+++.+|+|||+++.. +. .+.....+......++.. .+.++++..+++++.+..+
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 83 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV 83 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence 47999999999999999999999866789999987521 11 111112233333444432 3455566778999876543
Q ss_pred c------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 96 G------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 96 ~------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
. ..+.+.+....||+||+|||+ .+..+++||.+.+++++..++..+.... ..+..+++++|||+|.
T Consensus 84 ~~i~~~~~~v~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~~~-------~~~~~~~~v~ViGgG~ 155 (384)
T 2v3a_A 84 TGIDPGHQRIWIGEEEVRYRDLVLAWGA-EPIRVPVEGDAQDALYPINDLEDYARFR-------QAAAGKRRVLLLGAGL 155 (384)
T ss_dssp CEEEGGGTEEEETTEEEECSEEEECCCE-EECCCCCBSTTTTCEEECSSHHHHHHHH-------HHHTTCCEEEEECCSH
T ss_pred EEEECCCCEEEECCcEEECCEEEEeCCC-CcCCCCCCCcCcCCEEEECCHHHHHHHH-------HhhccCCeEEEECCCH
Confidence 2 345555555679999999999 5777789988766787776654321100 0011468999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.+.+.+...+...
T Consensus 156 ~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~~~~~~~~--------------------------- 187 (384)
T 2v3a_A 156 IGCEFANDLSS--------------------GG-YQLDVVAPCEQVMPGLLHP--------------------------- 187 (384)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTSCH---------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CeEEEEecCcchhhcccCH---------------------------
Confidence 99999999986 34 4799999887543222111
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
...+.+.+.+. +.|++++++..+.++. . +++. ..+++. +|
T Consensus 188 ------~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~-~~v~~~----------------~g- 227 (384)
T 2v3a_A 188 ------AAAKAVQAGLE-------------GLGVRFHLGPVLASLK--K-AGEG-LEAHLS----------------DG- 227 (384)
T ss_dssp ------HHHHHHHHHHH-------------TTTCEEEESCCEEEEE--E-ETTE-EEEEET----------------TS-
T ss_pred ------HHHHHHHHHHH-------------HcCCEEEeCCEEEEEE--e-cCCE-EEEEEC----------------CC-
Confidence 11122223332 6799999999999987 3 2222 122221 22
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC--CC-cchhHhhHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR--GP-TGIIATNLYCAEE 406 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~--g~-~~~~~~a~~~g~~ 406 (483)
+++++|.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+. ++ ......|..||+.
T Consensus 228 -~~i~~d~vv~a~G~~p~~----~l~~~~g~~~~-~g-i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~ 298 (384)
T 2v3a_A 228 -EVIPCDLVVSAVGLRPRT----ELAFAAGLAVN-RG-IVVDRS--LRTSHANIYALGDCAEVDGLNLLYVMPLMACARA 298 (384)
T ss_dssp -CEEEESEEEECSCEEECC----HHHHHTTCCBS-SS-EEECTT--CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHH
T ss_pred -CEEECCEEEECcCCCcCH----HHHHHCCCCCC-CC-EEECCC--CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHH
Confidence 479999999999999986 35566778776 57 999987 7799999999999974 22 2234468999999
Q ss_pred HHHHHHH
Q 011535 407 TVASISE 413 (483)
Q Consensus 407 ~a~~I~~ 413 (483)
+|.+|..
T Consensus 299 ~a~~i~g 305 (384)
T 2v3a_A 299 LAQTLAG 305 (384)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9999863
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=263.81 Aligned_cols=289 Identities=13% Similarity=0.180 Sum_probs=195.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCC---ChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP---ETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~---~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
++|+|||||+||+++|..|++.+++.+|+|||+.+.++.. ..++ ..+.. ..+++...+.+.+.+.+++++.+.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 79 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFL-SCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRH 79 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBC-GGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcc-cccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCC
Confidence 5899999999999999999998444999999998864321 1110 01111 122222223444556789987776
Q ss_pred EEc------eEEEecc------eeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 94 TLG------SSVSLSE------LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 94 ~v~------~~~~~~~------~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.+. ..+.+.+ ....||+||||||+ .+..+++||.+.+++++...+.....-. . ....+++
T Consensus 80 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~~~~~v~~~~~~~~~~~~~----~---~~~~~~~ 151 (452)
T 2cdu_A 80 QVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS-KPTVPPIPGIDSSRVYLCKNYNDAKKLF----E---EAPKAKT 151 (452)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTSTTEEECSSHHHHHHHH----H---HGGGCSE
T ss_pred EEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC-CcCCCCCCCCCCCCEEEeCcHHHHHHHH----H---HhccCCe
Confidence 542 2244432 23479999999998 5777889998777777654332110000 0 0114689
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
++|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+.......
T Consensus 152 vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~------------------- 191 (452)
T 2cdu_A 152 ITIIGSGYIGAELAEAYSN--------------------QN-YNVNLIDGHERVLYKYFDK------------------- 191 (452)
T ss_dssp EEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSSSTTTTTSCH-------------------
T ss_pred EEEECcCHHHHHHHHHHHh--------------------cC-CEEEEEEcCCchhhhhhhh-------------------
Confidence 9999999999999999985 34 5899999987643211111
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
.....+.+.+. ++||+++++..+.++. . +++++..+..
T Consensus 192 --------------~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~--~-~~~~v~~v~~------------ 229 (452)
T 2cdu_A 192 --------------EFTDILAKDYE-------------AHGVNLVLGSKVAAFE--E-VDDEIITKTL------------ 229 (452)
T ss_dssp --------------HHHHHHHHHHH-------------HTTCEEEESSCEEEEE--E-ETTEEEEEET------------
T ss_pred --------------hHHHHHHHHHH-------------HCCCEEEcCCeeEEEE--c-CCCeEEEEEe------------
Confidence 11222223333 6799999999999997 3 2454432221
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-------
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT------- 394 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~------- 394 (483)
+| ++++||.||+|+|++|+. ++.+.. +.++++|+|.+|++ ++|+.|+|||+|||+..+.
T Consensus 230 -----~g--~~i~~D~vv~a~G~~p~~----~ll~~~-l~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~ 295 (452)
T 2cdu_A 230 -----DG--KEIKSDIAILCIGFRPNT----ELLKGK-VAMLDNGAIITDEY--MHSSNRDIFAAGDSAAVHYNPTNSNA 295 (452)
T ss_dssp -----TS--CEEEESEEEECCCEEECC----GGGTTT-SCBCTTSCBCCCTT--SBCSSTTEEECSTTBCEEETTTTEEE
T ss_pred -----CC--CEEECCEEEECcCCCCCH----HHHHHh-hhcCCCCCEEECCC--cCcCCCCEEEcceEEEeccccCCCee
Confidence 12 379999999999999986 344555 77788899999998 7899999999999986421
Q ss_pred --chhHhhHHHHHHHHHHHHH
Q 011535 395 --GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 --~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|..
T Consensus 296 ~~~~~~~A~~~g~~aa~~i~g 316 (452)
T 2cdu_A 296 YIPLATNAVRQGRLVGLNLTE 316 (452)
T ss_dssp CCCCHHHHHHHHHHHHHTSSS
T ss_pred ecchHHHHHHHHHHHHHHhCC
Confidence 2334799999999999863
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=264.11 Aligned_cols=282 Identities=12% Similarity=0.176 Sum_probs=187.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------cccCCC-CCChH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD-HPETK 72 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-------------------------~g~~p~-~~~~~ 72 (483)
.++|+||||||||+++|..|++.+ .+|+|||+++ .||.+. +++... .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 368999999999999999999998 9999999985 555421 121110 01111
Q ss_pred -----------HHHHHHHHHHhcCCeEEEeCeEEc---eEEEecc-------------e-eeccCEEEEccCCCCCCCCC
Q 011535 73 -----------IVINQFSRVVQHERCSFFGNVTLG---SSVSLSE-------------L-RQLYHVVVLAYGAESDRALG 124 (483)
Q Consensus 73 -----------~~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~-------------~-~~~yd~vvlAtG~~~~~~~~ 124 (483)
.+...+...++..+++++.+..+. ..+.+.+ . ...||+||||||+ .|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs-~p~~p~ 157 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN-KPVFPP 157 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCC-CBCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCC-CCCCCC
Confidence 122234445566789998875431 1233322 2 2469999999998 577778
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
+||.+ .++++.++.. +..+++++|||+|++|+|+|..|.+ .+ .
T Consensus 158 i~G~~--~~~~~~~~~~--------------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~ 200 (500)
T 1onf_A 158 VKGIE--NTISSDEFFN--------------IKESKKIGIVGSGYIAVELINVIKR--------------------LG-I 200 (500)
T ss_dssp CTTGG--GCEEHHHHTT--------------CCCCSEEEEECCSHHHHHHHHHHHT--------------------TT-C
T ss_pred CCCCC--cccCHHHHhc--------------cCCCCeEEEECChHHHHHHHHHHHH--------------------cC-C
Confidence 88863 3444443321 1126899999999999999999986 34 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+|+++.|.+.+...|. +.....+.+.|. ++||+
T Consensus 201 ~Vtlv~~~~~~l~~~d----------------------------------~~~~~~l~~~l~-------------~~gv~ 233 (500)
T 1onf_A 201 DSYIFARGNRILRKFD----------------------------------ESVINVLENDMK-------------KNNIN 233 (500)
T ss_dssp EEEEECSSSSSCTTSC----------------------------------HHHHHHHHHHHH-------------HTTCE
T ss_pred eEEEEecCCccCcccc----------------------------------hhhHHHHHHHHH-------------hCCCE
Confidence 8999999876543222 111222223333 67999
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~ 364 (483)
++++..+.++. .++++.+ .+.+. +|+. ++++|.||+|+|++|+.- .+ ..+..|+.+ +
T Consensus 234 i~~~~~v~~i~--~~~~~~~-~v~~~----------------~g~~-~~~~D~vi~a~G~~p~~~-~l-~~~~~g~~~-~ 290 (500)
T 1onf_A 234 IVTFADVVEIK--KVSDKNL-SIHLS----------------DGRI-YEHFDHVIYCVGRSPDTE-NL-KLEKLNVET-N 290 (500)
T ss_dssp EECSCCEEEEE--ESSTTCE-EEEET----------------TSCE-EEEESEEEECCCBCCTTT-TS-SCTTTTCCB-S
T ss_pred EEECCEEEEEE--EcCCceE-EEEEC----------------CCcE-EEECCEEEECCCCCcCCC-CC-CchhcCccc-c
Confidence 99999999997 3112322 23221 2321 399999999999999861 11 135678888 7
Q ss_pred CCeeeecCCCCCCcccCceeeeccCCC---------------------------------CCcchhHhhHHHHHHHHHHH
Q 011535 365 RGRVLKNISGDSSQVENGLYVCGWLKR---------------------------------GPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 365 ~G~v~v~~~~~~~t~~p~vya~Gd~~~---------------------------------g~~~~~~~a~~~g~~~a~~I 411 (483)
+|+|.+|++ ++|+.|+|||+|||+. +.......|+.||+.+|.+|
T Consensus 291 ~G~i~vd~~--~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 368 (500)
T 1onf_A 291 NNYIVVDEN--QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRL 368 (500)
T ss_dssp SSCEEECTT--CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCC--cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHH
Confidence 899999998 6799999999999981 22233447999999999999
Q ss_pred HH
Q 011535 412 SE 413 (483)
Q Consensus 412 ~~ 413 (483)
..
T Consensus 369 ~g 370 (500)
T 1onf_A 369 FL 370 (500)
T ss_dssp HS
T ss_pred hC
Confidence 74
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=263.10 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=192.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-c------------------------ccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-S------------------------GVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~------------------------g~~p~--~~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||++ .+||.+. . ++... ....
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFG--KRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDW 80 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCC--CcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 579999999999999999999988 999999998 4565421 1 11110 1111
Q ss_pred HHH-----------HHHHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecc
Q 011535 72 KIV-----------INQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (483)
Q Consensus 72 ~~~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~ 137 (483)
..+ ...+...+...+++++.+.... ..+.++.....||+||||||+ .|..|++||.+ .++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~G~~--~~~~~~ 157 (463)
T 2r9z_A 81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGG-RPIVPRLPGAE--LGITSD 157 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCCSCTTGG--GSBCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCC-CCCCCCCCCcc--ceecHH
Confidence 111 1223344566789998876532 234443334579999999998 57777788863 244444
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++... . ..+++++|||+|.+|+|+|..|.+ .+ .+|+++.|++.+..
T Consensus 158 ~~~~~----------~---~~~~~vvVvGgG~~g~e~A~~l~~--------------------~G-~~Vtlv~~~~~~l~ 203 (463)
T 2r9z_A 158 GFFAL----------Q---QQPKRVAIIGAGYIGIELAGLLRS--------------------FG-SEVTVVALEDRLLF 203 (463)
T ss_dssp HHHHC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSST
T ss_pred HHhhh----------h---ccCCEEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEcCCcccc
Confidence 33211 0 135799999999999999999986 34 58999999876433
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.|.. .....+.+.+. +.||+++++..+.++.
T Consensus 204 ~~~~----------------------------------~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~-- 234 (463)
T 2r9z_A 204 QFDP----------------------------------LLSATLAENMH-------------AQGIETHLEFAVAALE-- 234 (463)
T ss_dssp TSCH----------------------------------HHHHHHHHHHH-------------HTTCEEESSCCEEEEE--
T ss_pred ccCH----------------------------------HHHHHHHHHHH-------------HCCCEEEeCCEEEEEE--
Confidence 2221 11112223332 6789999999999997
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. +++. ..+++. +|+. ++++|.||+|+|++|+. ..+ ..+..|+.++++|+|.+|++ ++
T Consensus 235 ~-~~~~-~~v~~~----------------~G~~-~i~~D~vv~a~G~~p~~-~~l-~~~~~g~~~~~~G~i~vd~~--~~ 291 (463)
T 2r9z_A 235 R-DAQG-TTLVAQ----------------DGTR-LEGFDSVIWAVGRAPNT-RDL-GLEAAGIEVQSNGMVPTDAY--QN 291 (463)
T ss_dssp E-ETTE-EEEEET----------------TCCE-EEEESEEEECSCEEESC-TTS-CHHHHTCCCCTTSCCCCCTT--SB
T ss_pred E-eCCe-EEEEEe----------------CCcE-EEEcCEEEECCCCCcCC-CCC-CchhcCCccCCCCCEeECCC--Cc
Confidence 3 1222 122221 2322 79999999999999976 111 12455788888999999988 77
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+..+.... .|+.+|+.+|.+|..
T Consensus 292 t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 292 TNVPGVYALGDITGRDQLTP-VAIAAGRRLAERLFD 326 (463)
T ss_dssp CSSTTEEECGGGGTSCCCHH-HHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEeecCCCcccHH-HHHHHHHHHHHHHcC
Confidence 99999999999976655444 799999999999874
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=263.36 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=195.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCCChHHHHHHHHH-HHhcCCeEEEeCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHPETKIVINQFSR-VVQHERCSFFGNV 93 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~~~~~~~~~~~~-~~~~~~v~~~~~~ 93 (483)
+++|+||||||||+++|..|++.+++.+|+|||+.+.+++. ..+ ........+++.....+ +.+..+++++.+.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~ 114 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA-QCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRH 114 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC-GGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC-CCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCC
Confidence 47999999999999999999997444999999998865321 111 10111122222222222 3345589998876
Q ss_pred EEc------eEEEecc---e---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCe
Q 011535 94 TLG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (483)
Q Consensus 94 ~v~------~~~~~~~---~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
.+. ..+.+.+ + ...||+||||||+ .++.+++||.+.+++++...+.....-... +. + ..+++
T Consensus 115 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~---~~-~-~~~~~ 188 (480)
T 3cgb_A 115 EVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV-RPVMPEWEGRDLQGVHLLKTIPDAERILKT---LE-T-NKVED 188 (480)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCBTTTSBTEECCSSHHHHHHHHHH---HH-S-SCCCE
T ss_pred EEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC-cccCCCCCCccCCCEEEeCCHHHHHHHHHH---hh-h-cCCCe
Confidence 552 2343332 3 3579999999998 577778999877777764433211100000 00 0 14689
Q ss_pred EEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccc
Q 011535 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (483)
Q Consensus 162 vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~ 241 (483)
|+|||+|++|+|+|..|.+ .+ .+|+++.|.+.+...+.
T Consensus 189 vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~--------------------- 226 (480)
T 3cgb_A 189 VTIIGGGAIGLEMAETFVE--------------------LG-KKVRMIERNDHIGTIYD--------------------- 226 (480)
T ss_dssp EEEECCHHHHHHHHHHHHH--------------------TT-CEEEEECCGGGTTSSSC---------------------
T ss_pred EEEECCCHHHHHHHHHHHh--------------------cC-CeEEEEEeCCchhhcCC---------------------
Confidence 9999999999999999886 34 57999998865432221
Q ss_pred ccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCc
Q 011535 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~ 321 (483)
+.+.+.+.+.+. +.||+++++..+.++. . ++++..+..
T Consensus 227 -------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~--~--~~~v~~v~~------------ 264 (480)
T 3cgb_A 227 -------------GDMAEYIYKEAD-------------KHHIEILTNENVKAFK--G--NERVEAVET------------ 264 (480)
T ss_dssp -------------HHHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E--SSBEEEEEE------------
T ss_pred -------------HHHHHHHHHHHH-------------HcCcEEEcCCEEEEEE--c--CCcEEEEEE------------
Confidence 111222223332 6789999999999997 4 344433321
Q ss_pred eeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-------
Q 011535 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT------- 394 (483)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~------- 394 (483)
.+ .+++||.||+|+|++|+. ++.+..|+.++++|+|.+|++ ++|+.|+|||+|||+..+.
T Consensus 265 -----~~--~~i~~D~vi~a~G~~p~~----~~l~~~g~~~~~~G~I~Vd~~--~~ts~p~IyA~GD~~~~~~~~~g~~~ 331 (480)
T 3cgb_A 265 -----DK--GTYKADLVLVSVGVKPNT----DFLEGTNIRTNHKGAIEVNAY--MQTNVQDVYAAGDCATHYHVIKEIHD 331 (480)
T ss_dssp -----TT--EEEECSEEEECSCEEESC----GGGTTSCCCBCTTSCBCCCTT--SBCSSTTEEECGGGBCEEBTTTCSEE
T ss_pred -----CC--CEEEcCEEEECcCCCcCh----HHHHhCCcccCCCCCEEECCC--ccCCCCCEEEeeeEEEecCCCCCcce
Confidence 11 379999999999999976 355777888888899999998 7899999999999985321
Q ss_pred --chhHhhHHHHHHHHHHHHH
Q 011535 395 --GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 --~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|..
T Consensus 332 ~~~~~~~A~~qg~~aa~~i~g 352 (480)
T 3cgb_A 332 HIPIGTTANKQGRLAGLNMLD 352 (480)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT
T ss_pred ecchHHHHHHHHHHHHHHhcC
Confidence 2234799999999999864
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=260.29 Aligned_cols=284 Identities=14% Similarity=0.151 Sum_probs=192.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------cccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-------------------------~g~~p~--~~~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+.+.+||... +|+... ....
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 468999999999999999999998 99999999877765321 111100 1112
Q ss_pred HHHH-----------HHHHHHHhcCCeEEEeCeEEc---eEEEe--cce-------------eeccCEEEEccCCCCCCC
Q 011535 72 KIVI-----------NQFSRVVQHERCSFFGNVTLG---SSVSL--SEL-------------RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~v~~~~~~~v~---~~~~~--~~~-------------~~~yd~vvlAtG~~~~~~ 122 (483)
..+. ..+...++..+++++.+..+. ..+.+ .++ ...||+||+|||+. +..
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~-p~~ 162 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR-VTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEE-ECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCC-CCC
Confidence 2221 123445566789988876542 12222 222 34699999999994 554
Q ss_pred CC-CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC
Q 011535 123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (483)
Q Consensus 123 ~~-ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~ 201 (483)
++ ++ .+. .+++..++... . ..+++++|||+|.+|+|+|..|.+ .
T Consensus 163 ~~~i~-~~~-~v~~~~~~~~~----------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 207 (482)
T 1ojt_A 163 LPFIP-EDP-RIIDSSGALAL----------K---EVPGKLLIIGGGIIGLEMGTVYST--------------------L 207 (482)
T ss_dssp CSSCC-CCT-TEECHHHHTTC----------C---CCCSEEEEESCSHHHHHHHHHHHH--------------------H
T ss_pred CCCCC-ccC-cEEcHHHHhcc----------c---ccCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 44 55 232 45554443210 0 136899999999999999999885 3
Q ss_pred CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011535 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (483)
Q Consensus 202 ~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~ 281 (483)
+ .+|+++.|.+.+...+. +...+.+.+.|. ++
T Consensus 208 G-~~Vtlv~~~~~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~ 239 (482)
T 1ojt_A 208 G-SRLDVVEMMDGLMQGAD----------------------------------RDLVKVWQKQNE-------------YR 239 (482)
T ss_dssp T-CEEEEECSSSSSSTTSC----------------------------------HHHHHHHHHHHG-------------GG
T ss_pred C-CeEEEEEECCccccccC----------------------------------HHHHHHHHHHHH-------------hc
Confidence 4 48999999876543222 111122223332 78
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc--cCCCC
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKG 359 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~--~~~~g 359 (483)
||+++++..+.++. . ++....+++.+. .+.++++++|.||+|+|++|+. ++ .+..|
T Consensus 240 gV~i~~~~~v~~i~--~--~~~~~~v~~~~~--------------~~~g~~~~~D~vv~a~G~~p~~----~~l~~~~~g 297 (482)
T 1ojt_A 240 FDNIMVNTKTVAVE--P--KEDGVYVTFEGA--------------NAPKEPQRYDAVLVAAGRAPNG----KLISAEKAG 297 (482)
T ss_dssp EEEEECSCEEEEEE--E--ETTEEEEEEESS--------------SCCSSCEEESCEEECCCEEECG----GGTTGGGTT
T ss_pred CCEEEECCEEEEEE--E--cCCeEEEEEecc--------------CCCceEEEcCEEEECcCCCcCC----CCCChhhcC
Confidence 99999999999997 3 222223333210 1112368899999999999986 23 36678
Q ss_pred cccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+.++++|+|.+|++ ++|+.|+|||+|||+..+.... .|..||+.+|.+|..
T Consensus 298 l~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~l~~-~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 298 VAVTDRGFIEVDKQ--MRTNVPHIYAIGDIVGQPMLAH-KAVHEGHVAAENCAG 348 (482)
T ss_dssp CCCCTTSCCCCCTT--SBCSSTTEEECGGGTCSSCCHH-HHHHHHHHHHHHHTT
T ss_pred ceeCCCCCEeeCCC--cccCCCCEEEEEcccCCCccHH-HHHHHHHHHHHHHcC
Confidence 88888899999997 7899999999999987665555 799999999999974
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=264.10 Aligned_cols=282 Identities=15% Similarity=0.142 Sum_probs=193.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------cccCCC--CCCh
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD--HPET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-------------------------~g~~p~--~~~~ 71 (483)
.++|+||||||+|+++|..|++.+ .+|+|||+ +.+||.+. +++... ....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALG--KKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW 81 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence 479999999999999999999999 99999999 56666321 111100 0111
Q ss_pred H-----------HHHHHHHHHHhcCCeEEEeCeEEc---eEEEe--cceeeccCEEEEccCCCCCC-CCCCCCCCCCCee
Q 011535 72 K-----------IVINQFSRVVQHERCSFFGNVTLG---SSVSL--SELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH 134 (483)
Q Consensus 72 ~-----------~~~~~~~~~~~~~~v~~~~~~~v~---~~~~~--~~~~~~yd~vvlAtG~~~~~-~~~ipg~~~~~v~ 134 (483)
. .+...+...+...+++++.+.... ..+.+ ......||+||+|||+ .+. .+++||.+ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~ 158 (463)
T 4dna_A 82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGG-HPSPHDALPGHE--LCI 158 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCE-EECCCTTSTTGG--GCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCC-CcccCCCCCCcc--ccc
Confidence 1 122234445556688888875431 23444 2234579999999998 566 77888865 234
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.
T Consensus 159 ~~~~~~~~----------~---~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~~Vt~v~~~~~ 204 (463)
T 4dna_A 159 TSNEAFDL----------P---ALPESILIAGGGYIAVEFANIFHG--------------------LG-VKTTLIYRGKE 204 (463)
T ss_dssp CHHHHTTC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSS
T ss_pred cHHHHhhh----------h---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCc
Confidence 43333210 0 146899999999999999999986 34 47999998875
Q ss_pred ccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCccee
Q 011535 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (483)
Q Consensus 215 ~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v 294 (483)
+...+. +...+.+.+.+. +.||+++++..+.++
T Consensus 205 ~l~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i 237 (463)
T 4dna_A 205 ILSRFD----------------------------------QDMRRGLHAAME-------------EKGIRILCEDIIQSV 237 (463)
T ss_dssp SSTTSC----------------------------------HHHHHHHHHHHH-------------HTTCEEECSCCEEEE
T ss_pred cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEECCCEEEEE
Confidence 432222 111222223332 679999999999999
Q ss_pred ecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC
Q 011535 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 295 ~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
. . +++.+..++. . .+| + +++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 238 ~--~-~~~~~~~v~~-~--------------~~g--~-i~aD~Vv~a~G~~p~~~-~l~-l~~~g~~~~~~G~i~vd~~- 293 (463)
T 4dna_A 238 S--A-DADGRRVATT-M--------------KHG--E-IVADQVMLALGRMPNTN-GLG-LEAAGVRTNELGAIIVDAF- 293 (463)
T ss_dssp E--E-CTTSCEEEEE-S--------------SSC--E-EEESEEEECSCEEESCT-TSS-TGGGTCCBCTTSCBCCCTT-
T ss_pred E--E-cCCCEEEEEE-c--------------CCC--e-EEeCEEEEeeCcccCCC-CCC-ccccCceECCCCCEeECcC-
Confidence 7 3 2222212220 0 122 3 99999999999999862 111 3567888999999999988
Q ss_pred CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+..+.... .|..||+.+|.+|+.
T Consensus 294 -~~t~~~~iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 294 -SRTSTPGIYALGDVTDRVQLTP-VAIHEAMCFIETEYK 330 (463)
T ss_dssp -CBCSSTTEEECSGGGSSCCCHH-HHHHHHHHHHHHHHS
T ss_pred -CCCCCCCEEEEEecCCCCCChH-HHHHHHHHHHHHHcC
Confidence 6799999999999987666555 799999999999974
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=260.11 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=194.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCC-CCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APD-HPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~-~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++|+|||||+||+++|..|++.+++.+|+|||+++.++. ...++ ..+ ....+++...+.+.+.+.+++++.+..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 79 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF-LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB-CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc-ccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 589999999999999999999844499999999986542 11111 011 1122222223334455568998777665
Q ss_pred c------eEEEecc---ee---eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEE
Q 011535 96 G------SSVSLSE---LR---QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAV 163 (483)
Q Consensus 96 ~------~~~~~~~---~~---~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vv 163 (483)
. +.+.+.+ +. ..||+||||||+ .|..+++||.+.+++++...+.....-... + .+. .+++++
T Consensus 80 ~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~---~-~~~-~~~~vv 153 (447)
T 1nhp_A 80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFELDIPGKDLDNIYLMRGRQWAIKLKQK---T-VDP-EVNNVV 153 (447)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCSTTTTSBSEECCCHHHHHHHHHHH---H-TCT-TCCEEE
T ss_pred EEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHHHH---h-hhc-CCCeEE
Confidence 2 2344432 22 469999999998 577778999887778765443211100000 0 000 468999
Q ss_pred EEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccccc
Q 011535 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (483)
Q Consensus 164 VIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~ 243 (483)
|||+|++|+|+|..|.+ .+ .+|+++.+.+.+...+...
T Consensus 154 IiG~G~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~--------------------- 191 (447)
T 1nhp_A 154 VIGSGYIGIEAAEAFAK--------------------AG-KKVTVIDILDRPLGVYLDK--------------------- 191 (447)
T ss_dssp EECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTCCH---------------------
T ss_pred EECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCcccccccCCH---------------------
Confidence 99999999999999886 34 4899999987543211111
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCcee
Q 011535 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (483)
Q Consensus 244 ~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~ 323 (483)
.+...+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 192 ------------~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~--~~~v~~v~~-------------- 228 (447)
T 1nhp_A 192 ------------EFTDVLTEEME-------------ANNITIATGETVERYE--G--DGRVQKVVT-------------- 228 (447)
T ss_dssp ------------HHHHHHHHHHH-------------TTTEEEEESCCEEEEE--C--SSBCCEEEE--------------
T ss_pred ------------HHHHHHHHHHH-------------hCCCEEEcCCEEEEEE--c--cCcEEEEEE--------------
Confidence 11122223332 6799999999999997 4 344433322
Q ss_pred eccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------
Q 011535 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT--------- 394 (483)
Q Consensus 324 ~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~--------- 394 (483)
++ .++++|.||+|+|++|+. ++.+.. +.++.+|++.+|++ ++|+.|+|||+|||+..+.
T Consensus 229 ---~~--~~i~~d~vi~a~G~~p~~----~~~~~~-~~~~~~G~i~Vd~~--~~t~~~~Iya~GD~~~~~~~~~g~~~~~ 296 (447)
T 1nhp_A 229 ---DK--NAYDADLVVVAVGVRPNT----AWLKGT-LELHPNGLIKTDEY--MRTSEPDVFAVGDATLIKYNPADTEVNI 296 (447)
T ss_dssp ---SS--CEEECSEEEECSCEEESC----GGGTTT-SCBCTTSCBCCCTT--CBCSSTTEEECGGGSCEEEGGGTEEECC
T ss_pred ---CC--CEEECCEEEECcCCCCCh----HHHHhh-hhhcCCCcEEECcc--ccCCCCCEEEeeeEEEeeccCCCCceec
Confidence 12 379999999999999986 344555 67778899999998 7899999999999985321
Q ss_pred chhHhhHHHHHHHHHHHHH
Q 011535 395 GIIATNLYCAEETVASISE 413 (483)
Q Consensus 395 ~~~~~a~~~g~~~a~~I~~ 413 (483)
.....|..||+.+|.+|..
T Consensus 297 ~~~~~A~~qg~~aa~~i~g 315 (447)
T 1nhp_A 297 ALATNARKQGRFAVKNLEE 315 (447)
T ss_dssp CCHHHHHHHHHHHHHTSSS
T ss_pred hhHHHHHHHHHHHHHhhcC
Confidence 2334799999999999863
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=257.78 Aligned_cols=283 Identities=14% Similarity=0.179 Sum_probs=195.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-cccCCC-----------------------C--CChHH
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD-----------------------H--PETKI 73 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~-~g~~p~-----------------------~--~~~~~ 73 (483)
++|+||||||||+++|..|++.+ .+|+|||+++.+||.+. +++.|. . .....
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLG--MKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCC--CeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence 58999999999999999999998 99999999987776532 111111 0 11111
Q ss_pred H-----------HHHHHHHHhcCCeEEEeCeEEc---eEEEec--ceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecc
Q 011535 74 V-----------INQFSRVVQHERCSFFGNVTLG---SSVSLS--ELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (483)
Q Consensus 74 ~-----------~~~~~~~~~~~~v~~~~~~~v~---~~~~~~--~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~ 137 (483)
+ ...+.+.++..+++++.+..+. ..+.+. .....||+||+|||+ .|..++++|.+..++++..
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~-~p~~~~~~g~~~~~v~~~~ 158 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGS-APLIPPWAQVDYERVVTST 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCE-EECCCTTBCCCSSSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCC-CCCCCCCCCCCcCcEechH
Confidence 1 1123445566689988876542 123332 223579999999998 5777778886655666655
Q ss_pred eeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc
Q 011535 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (483)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~ 217 (483)
++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.+..
T Consensus 159 ~~~~~----------~---~~~~~vvIiGgG~~g~e~A~~l~~--------------------~g-~~V~lv~~~~~~l~ 204 (455)
T 2yqu_A 159 EALSF----------P---EVPKRLIVVGGGVIGLELGVVWHR--------------------LG-AEVIVLEYMDRILP 204 (455)
T ss_dssp HHTCC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCT
T ss_pred Hhhcc----------c---cCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEecCCcccc
Confidence 44310 0 135899999999999999999885 34 47999998875432
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +.+.+.+.+.+. +.||+++++..+.++.
T Consensus 205 ~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~V~~i~-- 235 (455)
T 2yqu_A 205 TMD----------------------------------LEVSRAAERVFK-------------KQGLTIRTGVRVTAVV-- 235 (455)
T ss_dssp TSC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCCEEEEE--
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEEEEE--
Confidence 111 111222223332 5689999999999997
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~ 377 (483)
. +++.+ .+++. + ++++++|.||+|+|++|+... + ..+..|+.++++|++.+|++ ++
T Consensus 236 ~-~~~~v-~v~~~----------------~--g~~i~~D~vv~A~G~~p~~~~-l-~~~~~g~~~~~~g~i~vd~~--~~ 291 (455)
T 2yqu_A 236 P-EAKGA-RVELE----------------G--GEVLEADRVLVAVGRRPYTEG-L-SLENAGLSTDERGRIPVDEH--LR 291 (455)
T ss_dssp E-ETTEE-EEEET----------------T--SCEEEESEEEECSCEEECCTT-C-CGGGGTCCCCTTSCCCCCTT--SB
T ss_pred E-eCCEE-EEEEC----------------C--CeEEEcCEEEECcCCCcCCCC-C-ChhhcCCccCCCCcEeECCC--cc
Confidence 3 22221 12111 1 247999999999999997621 1 13556788887899999987 77
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
|+.|+|||+|||+.++.... .|..||+.+|.+|..
T Consensus 292 t~~~~iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 292 TRVPHIYAIGDVVRGPMLAH-KASEEGIAAVEHMVR 326 (455)
T ss_dssp CSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCCCccCHH-HHHHhHHHHHHHHcC
Confidence 99999999999987766555 799999999999986
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=270.40 Aligned_cols=293 Identities=15% Similarity=0.194 Sum_probs=201.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCCCC--ChHHHHHHHHHHHhcCCeEEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP--ETKIVINQFSRVVQHERCSFF 90 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~~~--~~~~~~~~~~~~~~~~~v~~~ 90 (483)
.+.+++|+|||||+||++||..|++.+++.+|+|||+.+.++. ...++ .++.. ..+.+..++..+.+..+++++
T Consensus 33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~-~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~ 111 (588)
T 3ics_A 33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF-ANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIR 111 (588)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEE
T ss_pred cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEE
Confidence 3456899999999999999999999965699999999987541 11111 01111 111233445666667789998
Q ss_pred eCeEEce------EEEec---ce---eeccCEEEEccCCCCCCCCCCCCC-CCCCeeecceeeeeecCCCCCCCCCCCCC
Q 011535 91 GNVTLGS------SVSLS---EL---RQLYHVVVLAYGAESDRALGIPGE-DLIGVHSAREFVWWYNGHPDGKNLSPDLK 157 (483)
Q Consensus 91 ~~~~v~~------~~~~~---~~---~~~yd~vvlAtG~~~~~~~~ipg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~ 157 (483)
.+..+.. .+.+. ++ ...||+||||||+ .+..+++||. +.+++++...+......... +. + .
T Consensus 112 ~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~---l~-~-~ 185 (588)
T 3ics_A 112 VLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA-KPIVPSIPGIEEAKALFTLRNVPDTDRIKAY---ID-E-K 185 (588)
T ss_dssp CSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTTCTTEEECSSHHHHHHHHHH---HH-H-H
T ss_pred ECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC-CCCCCCCCCcccCCCeEEeCCHHHHHHHHHH---Hh-h-c
Confidence 8877632 23332 22 3469999999998 6777889998 67777776544321100000 00 0 1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.+...+.
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~----------------- 227 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRE--------------------RG-IEVTLVEMANQVMPPID----------------- 227 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCTTSC-----------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEecCCcccccCC-----------------
Confidence 46899999999999999999986 34 57999998876543222
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.....+.+.+. +.||+++++..+.++. . +++ .+.+.
T Consensus 228 -----------------~~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~---~v~~~------- 264 (588)
T 3ics_A 228 -----------------YEMAAYVHEHMK-------------NHDVELVFEDGVDALE--E-NGA---VVRLK------- 264 (588)
T ss_dssp -----------------HHHHHHHHHHHH-------------HTTCEEECSCCEEEEE--G-GGT---EEEET-------
T ss_pred -----------------HHHHHHHHHHHH-------------HcCCEEEECCeEEEEe--c-CCC---EEEEC-------
Confidence 111222223332 6799999999999997 3 122 23321
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC------
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------ 391 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~------ 391 (483)
+| +++++|.||+|+|++|+. ++.+..|+.++++|++.+|++ ++|+.|+|||+|||+.
T Consensus 265 ---------~g--~~i~~D~Vi~a~G~~p~~----~~l~~~g~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~ 327 (588)
T 3ics_A 265 ---------SG--SVIQTDMLILAIGVQPES----SLAKGAGLALGVRGTIKVNEK--FQTSDPHIYAIGDAIEVKDFVT 327 (588)
T ss_dssp ---------TS--CEEECSEEEECSCEEECC----HHHHHTTCCBCGGGCBCCCTT--SBCSSTTEEECGGGBCEEBTTT
T ss_pred ---------CC--CEEEcCEEEEccCCCCCh----HHHHhcCceEcCCCCEEECCc--cccCCCCEEEeeeeeecccccC
Confidence 22 379999999999999986 355667888888999999987 7899999999999984
Q ss_pred CC---cchhHhhHHHHHHHHHHHHH
Q 011535 392 GP---TGIIATNLYCAEETVASISE 413 (483)
Q Consensus 392 g~---~~~~~~a~~~g~~~a~~I~~ 413 (483)
|. ......|..||+.+|.+|+.
T Consensus 328 g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 328 ETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred CcccccccHHHHHHHHHHHHHHhcC
Confidence 21 12333689999999999874
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=263.93 Aligned_cols=282 Identities=16% Similarity=0.164 Sum_probs=192.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-e------------------------cccCCCCC--Ch
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-R------------------------SGVAPDHP--ET 71 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-~------------------------~g~~p~~~--~~ 71 (483)
.++|+||||||||+++|..|++.+ .+|+|||+ ..+||.+ . +++....+ ..
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALG--KRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCc--CEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 479999999999999999999999 99999999 5566642 1 12211111 11
Q ss_pred H-----------HHHHHHHHHHhcCCeEEEeCeEEc---eEEEec--ceeeccCEEEEccCCCCCC-CCCCCCCCCCCee
Q 011535 72 K-----------IVINQFSRVVQHERCSFFGNVTLG---SSVSLS--ELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH 134 (483)
Q Consensus 72 ~-----------~~~~~~~~~~~~~~v~~~~~~~v~---~~~~~~--~~~~~yd~vvlAtG~~~~~-~~~ipg~~~~~v~ 134 (483)
. .+...+...+...+++++.+.... ..+.+. .....||+||||||+ .+. .+++||.+ .++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~ 179 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGA-KIVSNSAIKGSD--LCL 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCE-EECCC--CBTGG--GSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCC-CcccCCCCCCcc--ccc
Confidence 1 222334455666789988875432 234442 233579999999998 566 67788864 233
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.|.+.
T Consensus 180 ~~~~~~~~----------~---~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~ 225 (484)
T 3o0h_A 180 TSNEIFDL----------E---KLPKSIVIVGGGYIGVEFANIFHG--------------------LG-VKTTLLHRGDL 225 (484)
T ss_dssp CTTTGGGC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSS
T ss_pred cHHHHHhH----------H---hcCCcEEEECcCHHHHHHHHHHHH--------------------cC-CeEEEEECCCc
Confidence 33332210 0 146899999999999999999885 34 47999998875
Q ss_pred ccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCccee
Q 011535 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (483)
Q Consensus 215 ~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v 294 (483)
+...+. +.+...+.+.+. +.||+++++..+.++
T Consensus 226 ~l~~~~----------------------------------~~~~~~l~~~l~-------------~~Gv~i~~~~~V~~i 258 (484)
T 3o0h_A 226 ILRNFD----------------------------------YDLRQLLNDAMV-------------AKGISIIYEATVSQV 258 (484)
T ss_dssp SSTTSC----------------------------------HHHHHHHHHHHH-------------HHTCEEESSCCEEEE
T ss_pred cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEEE
Confidence 432222 112222233333 568999999999999
Q ss_pred ecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC
Q 011535 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 295 ~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
. . +++.+ .+.+. +| +++++|.||+|+|++|+.. .+. .+..|+.++++|++.+|++
T Consensus 259 ~--~-~~~~v-~v~~~----------------~g--~~i~aD~Vi~A~G~~p~~~-~l~-l~~~g~~~~~~G~i~vd~~- 313 (484)
T 3o0h_A 259 Q--S-TENCY-NVVLT----------------NG--QTICADRVMLATGRVPNTT-GLG-LERAGVKVNEFGAVVVDEK- 313 (484)
T ss_dssp E--E-CSSSE-EEEET----------------TS--CEEEESEEEECCCEEECCT-TCC-HHHHTCCBCTTSCBCCCTT-
T ss_pred E--e-eCCEE-EEEEC----------------CC--cEEEcCEEEEeeCCCcCCC-CCC-hhhcCceECCCCCEeECCC-
Confidence 7 4 23433 33321 22 3799999999999999762 111 3456788888999999987
Q ss_pred CCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++|+.|+|||+|||+.++.... .|+.+|+.+|.+|+..
T Consensus 314 -~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 314 -MTTNVSHIWAVGDVTGHIQLTP-VAIHDAMCFVKNAFEN 351 (484)
T ss_dssp -SBCSSTTEEECGGGGTSCCCHH-HHHHHHHHHHHHHHC-
T ss_pred -CCCCCCCEEEEEecCCCCcCHH-HHHHHHHHHHHHHcCC
Confidence 7799999999999987666555 7999999999999854
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=262.71 Aligned_cols=292 Identities=17% Similarity=0.178 Sum_probs=194.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-Cc--eecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GL--VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-gl--~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
.++|+|||||+||+++|..|++.+.+.+|+|||+.+... .. +...+..+......+...+.+.+.+.+++++.++.+
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 479999999999999999999998444899999987632 11 011111111111222111234455678999988654
Q ss_pred c------eEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCC---eeecceeeeeecCCCCCCCCCCCCCCCCeEEEE
Q 011535 96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIG---VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (483)
Q Consensus 96 ~------~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~---v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 165 (483)
. ..+.+.++ ...||+||+|||+ .++.+++||.+..+ +++......... +...+..+++|+||
T Consensus 84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~p~~~~i~G~~~~~~~~v~~~~~~~d~~~-------l~~~l~~~~~vvVi 155 (431)
T 1q1r_A 84 TAINRDRQQVILSDGRALDYDRLVLATGG-RPRPLPVASGAVGKANNFRYLRTLEDAEC-------IRRQLIADNRLVVI 155 (431)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTHHHHSTTEEESSSHHHHHH-------HHHTCCTTCEEEEE
T ss_pred EEEECCCCEEEECCCCEEECCEEEEcCCC-CccCCCCCCcccCCCceEEEECCHHHHHH-------HHHHhhcCCeEEEE
Confidence 2 24555544 3579999999999 57777888876444 654332211100 00012257899999
Q ss_pred cCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCC
Q 011535 166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (483)
Q Consensus 166 G~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~ 245 (483)
|+|++|+|+|..|.+ .+ .+|+++.+.+.+.......
T Consensus 156 GgG~~g~E~A~~l~~--------------------~G-~~Vtlv~~~~~~l~~~~~~----------------------- 191 (431)
T 1q1r_A 156 GGGYIGLEVAATAIK--------------------AN-MHVTLLDTAARVLERVTAP----------------------- 191 (431)
T ss_dssp CCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCH-----------------------
T ss_pred CCCHHHHHHHHHHHh--------------------CC-CEEEEEEeCCccccchhhH-----------------------
Confidence 999999999999986 34 4799999887543221111
Q ss_pred CCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccC-CCCceEEEEEeeeeeeCCCCCceee
Q 011535 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALKGGGPGKQYA 324 (483)
Q Consensus 246 ~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~-~~g~v~~v~~~~~~l~~~~~g~~~~ 324 (483)
.....+.+.+. +.||+++++..+.++. .+ +++++..+.+.
T Consensus 192 ----------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~~~~~~~v~~v~~~-------------- 232 (431)
T 1q1r_A 192 ----------PVSAFYEHLHR-------------EAGVDIRTGTQVCGFE--MSTDQQKVTAVLCE-------------- 232 (431)
T ss_dssp ----------HHHHHHHHHHH-------------HHTCEEECSCCEEEEE--ECTTTCCEEEEEET--------------
T ss_pred ----------HHHHHHHHHHH-------------hCCeEEEeCCEEEEEE--eccCCCcEEEEEeC--------------
Confidence 11112223332 5689999999999987 20 13555545432
Q ss_pred ccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---c------
Q 011535 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---G------ 395 (483)
Q Consensus 325 ~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---~------ 395 (483)
+| ++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+. |
T Consensus 233 --~G--~~i~~D~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~Vd~~--~~ts~~~IyA~GD~~~~~~~~~g~~~~~~ 300 (431)
T 1q1r_A 233 --DG--TRLPADLVIAGIGLIPNC----ELASAAGLQVD-NG-IVINEH--MQTSDPLIMAVGDCARFHSQLYDRWVRIE 300 (431)
T ss_dssp --TS--CEEECSEEEECCCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEEEETTTTEEEECC
T ss_pred --CC--CEEEcCEEEECCCCCcCc----chhhccCCCCC-CC-EEECCC--cccCCCCEEEEEeEEEEccccCCceEeeC
Confidence 22 379999999999999976 35566677775 46 888887 7899999999999986542 1
Q ss_pred hhHhhHHHHHHHHHHHHH
Q 011535 396 IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 ~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.||+.+|.+|..
T Consensus 301 ~~~~A~~qg~~aa~~i~g 318 (431)
T 1q1r_A 301 SVPNALEQARKIAAILCG 318 (431)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 234699999999999964
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=258.40 Aligned_cols=290 Identities=16% Similarity=0.156 Sum_probs=191.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec--------CCCCCCce-e------------------------ccc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR--------LPTPFGLV-R------------------------SGV 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~--------~~~~ggl~-~------------------------~g~ 64 (483)
..++|+||||||||++||..|++.+ .+|+|||+ ...+||.+ . +|+
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 4579999999999999999999999 99999997 34566632 1 222
Q ss_pred CC---CCCChHHHHH-----------HHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCC
Q 011535 65 AP---DHPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 65 ~p---~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~ 122 (483)
.. .......+.. .+...+...+++++.+.... ..+...++ ...||+||||||+ .|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~ 161 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGG-RPRY 161 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCE-EECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCC-CCCC
Confidence 11 1112222221 12334555688888775541 12333333 3469999999998 5777
Q ss_pred CC-CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC
Q 011535 123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (483)
Q Consensus 123 ~~-ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~ 201 (483)
|+ +||.+.. ++++.++.. . . ..+++++|||+|++|+|+|..|.+ .
T Consensus 162 p~~i~G~~~~-~~~~~~~~~----~------~---~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 207 (488)
T 3dgz_A 162 PTQVKGALEY-GITSDDIFW----L------K---ESPGKTLVVGASYVALECAGFLTG--------------------I 207 (488)
T ss_dssp CSSCBTHHHH-CBCHHHHTT----C------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------T
T ss_pred CCCCCCcccc-cCcHHHHHh----h------h---hcCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 77 8886422 233333221 0 0 145789999999999999999986 3
Q ss_pred CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011535 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (483)
Q Consensus 202 ~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~ 281 (483)
+ .+|+++.|+. ....+. +.+.+.+.+.+. ++
T Consensus 208 g-~~Vtlv~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~ 238 (488)
T 3dgz_A 208 G-LDTTVMMRSI-PLRGFD----------------------------------QQMSSLVTEHME-------------SH 238 (488)
T ss_dssp T-CCEEEEESSC-SSTTSC----------------------------------HHHHHHHHHHHH-------------HT
T ss_pred C-CceEEEEcCc-ccccCC----------------------------------HHHHHHHHHHHH-------------HC
Confidence 4 4799998864 221111 112222233333 67
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcc
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~ 361 (483)
||+++++..+.++. ..+++.+ .+++.+. .+++..++++|.||+|+|++|+.- .+. .+..|+.
T Consensus 239 gv~~~~~~~v~~i~--~~~~~~~-~v~~~~~-------------~~g~~~~~~~D~vi~a~G~~p~~~-~l~-l~~~g~~ 300 (488)
T 3dgz_A 239 GTQFLKGCVPSHIK--KLPTNQL-QVTWEDH-------------ASGKEDTGTFDTVLWAIGRVPETR-TLN-LEKAGIS 300 (488)
T ss_dssp TCEEEETEEEEEEE--ECTTSCE-EEEEEET-------------TTTEEEEEEESEEEECSCEEESCG-GGT-GGGGTCC
T ss_pred CCEEEeCCEEEEEE--EcCCCcE-EEEEEeC-------------CCCeeEEEECCEEEEcccCCcccC-cCC-ccccCcE
Confidence 99999999998887 3123333 3444320 124445789999999999999861 111 3556888
Q ss_pred cC-CCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 362 PN-IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 362 ~~-~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ ++|++.+|++ ++|+.|+|||+|||+.+.......|+.+|+.+|.+|+.
T Consensus 301 ~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 351 (488)
T 3dgz_A 301 TNPKNQKIIVDAQ--EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG 351 (488)
T ss_dssp BCSSSCCBCCCTT--SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred ecCCCCeEeECCC--CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcC
Confidence 88 7899999987 78999999999999754333333799999999999974
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-29 Score=260.33 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=189.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCCcee-------------------------ccc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGLVR-------------------------SGV 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~ggl~~-------------------------~g~ 64 (483)
..++|+||||||||+++|..|++.+ .+|+|||+.+ .+||... +|+
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~ 108 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYG--KKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGW 108 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCc
Confidence 3579999999999999999999999 9999999864 4566321 122
Q ss_pred CCC---CCChHHHHH-----------HHHHHHhcCCeEEEeCeEEc-----eEEEecce---eeccCEEEEccCCCCCCC
Q 011535 65 APD---HPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 65 ~p~---~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~-----~~~~~~~~---~~~yd~vvlAtG~~~~~~ 122 (483)
... ......+.. .+...++..+++++.+...- ..+...++ ...||+||||||+ .|..
T Consensus 109 ~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs-~p~~ 187 (519)
T 3qfa_A 109 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGE-RPRY 187 (519)
T ss_dssp CCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCE-EECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCC-CcCC
Confidence 111 112222211 12234556789888776542 12333333 3469999999998 6777
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
+++||.+. .++++.++.. . . ...++++|||+|++|+|+|..|.+ .+
T Consensus 188 p~i~G~~~-~~~t~~~~~~----l------~---~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G 233 (519)
T 3qfa_A 188 LGIPGDKE-YCISSDDLFS----L------P---YCPGKTLVVGASYVALECAGFLAG--------------------IG 233 (519)
T ss_dssp CCCTTHHH-HCBCHHHHTT----C------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCccC-ceEcHHHHhh----h------h---hcCCeEEEECCcHHHHHHHHHHHH--------------------cC
Confidence 78888542 2333333221 0 0 135679999999999999999986 44
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|+ .+...+. +...+.+.+.|. ++|
T Consensus 234 -~~Vtlv~~~-~~l~~~d----------------------------------~~~~~~~~~~l~-------------~~G 264 (519)
T 3qfa_A 234 -LDVTVMVRS-ILLRGFD----------------------------------QDMANKIGEHME-------------EHG 264 (519)
T ss_dssp -CCEEEEESS-CSSTTSC----------------------------------HHHHHHHHHHHH-------------HTT
T ss_pred -CeEEEEecc-cccccCC----------------------------------HHHHHHHHHHHH-------------HCC
Confidence 479999885 3322221 111222223333 679
Q ss_pred EEEeecCCcceeecccC-CCCceEEEEEeeeeeeCCCCCceeeccCC-ceEEEecCeEEEeeecCCCCCCCCCccCCCCc
Q 011535 283 LHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALKGGGPGKQYAVGTG-EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~-~~g~v~~v~~~~~~l~~~~~g~~~~~~~g-~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~ 360 (483)
|+++++..+.++....+ +++.+ .+.+.. .++ +..++++|.||+|+|++|+.. .+. .+..|+
T Consensus 265 V~v~~~~~v~~v~~~~~~~~~~~-~v~~~~--------------~~g~~~~~~~~D~vi~a~G~~p~~~-~l~-l~~~gl 327 (519)
T 3qfa_A 265 IKFIRQFVPIKVEQIEAGTPGRL-RVVAQS--------------TNSEEIIEGEYNTVMLAIGRDACTR-KIG-LETVGV 327 (519)
T ss_dssp CEEEESEEEEEEEEEECCTTCEE-EEEEEE--------------SSSSCEEEEEESEEEECSCEEESCS-SSC-STTTTC
T ss_pred CEEEeCCeEEEEEEccCCCCceE-EEEEEE--------------CCCcEEEEEECCEEEEecCCcccCC-CCC-hhhcCc
Confidence 99999887777752110 01222 222221 022 234789999999999999862 111 366788
Q ss_pred ccC-CCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 361 VPN-IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 361 ~~~-~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.++ ++|+|.+|++ ++|+.|+|||+|||+.+.......|+.+|+.+|.+|+.
T Consensus 328 ~~~~~~G~I~Vd~~--~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 328 KINEKTGKIPVTDE--EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp CCCTTTCCBCCCTT--SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred EEcCCCCeEeeCCC--CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 888 5899999988 78999999999999854333434799999999999974
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=256.12 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=190.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee----------------------------cccCCC--C
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR----------------------------SGVAPD--H 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~----------------------------~g~~p~--~ 68 (483)
.++|+||||||||+++|..|++.+ .+|+|||+ +.+||.+. +|+... .
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR 81 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence 479999999999999999999998 99999999 55665421 232111 1
Q ss_pred CChHHHHH-----------HHHHHHhcCCeEEEeCeEEc---eEEEecceeeccCEEEEccCCCCCCCCC-CCCCCCCCe
Q 011535 69 PETKIVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGV 133 (483)
Q Consensus 69 ~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~---~~~~~~~~~~~yd~vvlAtG~~~~~~~~-ipg~~~~~v 133 (483)
.....+.. .+...++..+++++.++.+. +.+.+.+....||+||||||+ .|+.++ +|. +. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs-~p~~~~~~~~-~~-~v 158 (458)
T 1lvl_A 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGS-SSVELPMLPL-GG-PV 158 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCE-EECCBTTBCC-BT-TE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCC-CCCCCCCCCc-cC-cE
Confidence 11222221 23355667889999887642 235554444579999999999 455443 442 22 45
Q ss_pred eecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 134 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+++.++... . ..+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+
T Consensus 159 ~~~~~~~~~----------~---~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~ 204 (458)
T 1lvl_A 159 ISSTEALAP----------K---ALPQHLVVVGGGYIGLELGIAYRK--------------------LG-AQVSVVEARE 204 (458)
T ss_dssp ECHHHHTCC----------S---SCCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEECSSS
T ss_pred ecHHHHhhh----------h---ccCCeEEEECcCHHHHHHHHHHHH--------------------CC-CeEEEEEcCC
Confidence 554443210 0 146899999999999999999885 34 4799999987
Q ss_pred cccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 214 ~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+...+. +...+.+.+.+. ++||+++++..+.+
T Consensus 205 ~~l~~~~----------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~ 237 (458)
T 1lvl_A 205 RILPTYD----------------------------------SELTAPVAESLK-------------KLGIALHLGHSVEG 237 (458)
T ss_dssp SSSTTSC----------------------------------HHHHHHHHHHHH-------------HHTCEEETTCEEEE
T ss_pred ccccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEECCEEEE
Confidence 6432221 111222223332 56899999999999
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~ 373 (483)
+. . +. +.+.. .+|+..++++|.||+|+|++|+.. .+ ..+..|+.++++ ++.+|++
T Consensus 238 i~----~-~~---v~v~~--------------~~G~~~~i~~D~vv~a~G~~p~~~-~l-~~~~~g~~~~~~-~i~vd~~ 292 (458)
T 1lvl_A 238 YE----N-GC---LLAND--------------GKGGQLRLEADRVLVAVGRRPRTK-GF-NLECLDLKMNGA-AIAIDER 292 (458)
T ss_dssp EE----T-TE---EEEEC--------------SSSCCCEECCSCEEECCCEEECCS-SS-SGGGSCCCEETT-EECCCTT
T ss_pred EE----e-CC---EEEEE--------------CCCceEEEECCEEEECcCCCcCCC-CC-CcHhcCCcccCC-EEeECCC
Confidence 86 2 22 22221 023334899999999999999862 11 235667877777 8999987
Q ss_pred CCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 374 ~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++|+.|+|||+|||+.++.... .|..||+.+|.+|..
T Consensus 293 --~~t~~~~Iya~GD~~~~~~~~~-~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 293 --CQTSMHNVWAIGDVAGEPMLAH-RAMAQGEMVAEIIAG 329 (458)
T ss_dssp --CBCSSTTEEECGGGGCSSCCHH-HHHHHHHHHHHHHTT
T ss_pred --CcCCCCCEEEeeccCCCcccHH-HHHHHHHHHHHHhcC
Confidence 7799999999999988766555 799999999999974
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=254.20 Aligned_cols=277 Identities=18% Similarity=0.196 Sum_probs=185.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC---ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG---LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg---l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..+|+||||||||++||..|++.+ +|+|||+++.++. ++.. ...+....+++.....++++..+++++.++.+
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~~~~~~l~~-~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v 83 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSH-YIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEA 83 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCCCCSTTHHH-HHTTSSCGGGGCSSCHHHHHHHTEEEECSCCE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCccccchhHH-HHhCCCCHHHhccCCHHHHHhCCcEEEECCEE
Confidence 469999999999999999998875 9999999876421 1111 11222233333333344556678999988543
Q ss_pred c------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCc
Q 011535 96 G------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (483)
Q Consensus 96 ~------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~ 169 (483)
. ..+..+.....||+||||||+ .|+.+++|| .+++++...+....... ..+..+++++|||+|+
T Consensus 84 ~~id~~~~~V~~~g~~~~~d~lViATGs-~p~~p~i~G--~~~v~~~~~~~~~~~l~-------~~~~~~~~vvViGgG~ 153 (367)
T 1xhc_A 84 KLIDRGRKVVITEKGEVPYDTLVLATGA-RAREPQIKG--KEYLLTLRTIFDADRIK-------ESIENSGEAIIIGGGF 153 (367)
T ss_dssp EEEETTTTEEEESSCEEECSEEEECCCE-EECCCCSBT--GGGEECCCSHHHHHHHH-------HHHHHHSEEEEEECSH
T ss_pred EEEECCCCEEEECCcEEECCEEEECCCC-CCCCCCCCC--cCCEEEEcCHHHHHHHH-------HHhhcCCcEEEECCCH
Confidence 2 123322223579999999998 677778888 34566543332111000 0001248999999999
Q ss_pred hHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcH
Q 011535 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (483)
Q Consensus 170 ~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (483)
+|+|+|..|.+ .+ .+|+++.|.+.+.. +.
T Consensus 154 ~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~-~~----------------------------- 182 (367)
T 1xhc_A 154 IGLELAGNLAE--------------------AG-YHVKLIHRGAMFLG-LD----------------------------- 182 (367)
T ss_dssp HHHHHHHHHHH--------------------TT-CEEEEECSSSCCTT-CC-----------------------------
T ss_pred HHHHHHHHHHh--------------------CC-CEEEEEeCCCeecc-CC-----------------------------
Confidence 99999999986 44 47999998875432 21
Q ss_pred HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCc
Q 011535 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (483)
Q Consensus 250 ~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~ 329 (483)
+...+.+.+.+. ++||+++++..+.++. . + .+++ .+
T Consensus 183 -----~~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~--~----~v~~------------------~~ 218 (367)
T 1xhc_A 183 -----EELSNMIKDMLE-------------ETGVKFFLNSELLEAN--E--E----GVLT------------------NS 218 (367)
T ss_dssp -----HHHHHHHHHHHH-------------HTTEEEECSCCEEEEC--S--S----EEEE------------------TT
T ss_pred -----HHHHHHHHHHHH-------------HCCCEEEcCCEEEEEE--e--e----EEEE------------------CC
Confidence 111222223333 6799999999888885 2 1 2322 12
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC--C-cchhHhhHHHHHH
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG--P-TGIIATNLYCAEE 406 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g--~-~~~~~~a~~~g~~ 406 (483)
++ +++|.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+.. + .+....|+.||+.
T Consensus 219 g~-i~~D~vi~a~G~~p~~----~ll~~~gl~~~-~g-i~Vd~~--~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~ 289 (367)
T 1xhc_A 219 GF-IEGKVKICAIGIVPNV----DLARRSGIHTG-RG-ILIDDN--FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARV 289 (367)
T ss_dssp EE-EECSCEEEECCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHH
T ss_pred CE-EEcCEEEECcCCCcCH----HHHHhCCCCCC-CC-EEECCC--cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHH
Confidence 24 9999999999999986 35566677775 45 888887 78999999999999742 2 2344579999999
Q ss_pred HHHHHHH
Q 011535 407 TVASISE 413 (483)
Q Consensus 407 ~a~~I~~ 413 (483)
+|.+|..
T Consensus 290 aa~~i~g 296 (367)
T 1xhc_A 290 LADILKG 296 (367)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 9999964
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-29 Score=257.60 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=191.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC---C------CCCCce-e------------------------cc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---P------TPFGLV-R------------------------SG 63 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~---~------~~ggl~-~------------------------~g 63 (483)
..++|+||||||||+++|..|++.+ .+|+|||+. + ..||.+ . +|
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g 85 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNG--ARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYG 85 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999 999999942 1 245532 1 22
Q ss_pred cCCC---CCChHHHHH-----------HHHHHHhcCCeEEEeCeEEce-----EEEecce--eeccCEEEEccCCCCCCC
Q 011535 64 VAPD---HPETKIVIN-----------QFSRVVQHERCSFFGNVTLGS-----SVSLSEL--RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 64 ~~p~---~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~v~~-----~~~~~~~--~~~yd~vvlAtG~~~~~~ 122 (483)
+... ......+.. .+...+...+++++.+...-. .+...++ ...||+||||||+ .|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs-~p~~ 164 (483)
T 3dgh_A 86 WNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGG-RPRY 164 (483)
T ss_dssp BCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCE-EECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCC-CcCC
Confidence 2111 112222221 122334556888887755421 2333333 3579999999998 6777
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|++||.+.. ++++.++.. . . ..+++++|||+|++|+|+|..|.+ .+
T Consensus 165 p~i~G~~~~-~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~--------------------~g 210 (483)
T 3dgh_A 165 PDIPGAVEY-GITSDDLFS----L------D---REPGKTLVVGAGYIGLECAGFLKG--------------------LG 210 (483)
T ss_dssp CSSTTHHHH-CBCHHHHTT----C------S---SCCCEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCcccc-cCcHHHHhh----h------h---hcCCcEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 788886422 233333221 0 0 146799999999999999999986 34
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+|+++.|.. ....+. +...+.+.+.+. ++|
T Consensus 211 -~~Vtlv~~~~-~l~~~d----------------------------------~~~~~~l~~~l~-------------~~G 241 (483)
T 3dgh_A 211 -YEPTVMVRSI-VLRGFD----------------------------------QQMAELVAASME-------------ERG 241 (483)
T ss_dssp -CEEEEEESSC-SSTTSC----------------------------------HHHHHHHHHHHH-------------HTT
T ss_pred -CEEEEEeCCC-CCcccC----------------------------------HHHHHHHHHHHH-------------hCC
Confidence 5799998853 221111 111222223333 678
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~ 362 (483)
|+++++..+.++. .++++.+ .+++.+ + .+++..++++|.||+|+|++|+.- .+ ..+..|+..
T Consensus 242 v~i~~~~~v~~i~--~~~~~~~-~v~~~~--------~-----~~~~~~~~~~D~vi~a~G~~p~~~-~l-~l~~~gl~~ 303 (483)
T 3dgh_A 242 IPFLRKTVPLSVE--KQDDGKL-LVKYKN--------V-----ETGEESEDVYDTVLWAIGRKGLVD-DL-NLPNAGVTV 303 (483)
T ss_dssp CCEEETEEEEEEE--ECTTSCE-EEEEEE--------T-----TTCCEEEEEESEEEECSCEEECCG-GG-TGGGTTCCC
T ss_pred CEEEeCCEEEEEE--EcCCCcE-EEEEec--------C-----CCCceeEEEcCEEEECcccccCcC-cC-CchhcCccc
Confidence 9999999999987 3123333 354443 1 134456899999999999999761 11 125678888
Q ss_pred CCCCeeeecCCCCCCcccCceeeeccCCCC-CcchhHhhHHHHHHHHHHHHH
Q 011535 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRG-PTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 363 ~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g-~~~~~~~a~~~g~~~a~~I~~ 413 (483)
++ |++.+|++ ++|+.|+|||+|||+.+ +.... .|..+|+.+|.+|+.
T Consensus 304 ~~-G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~-~A~~~g~~aa~~i~g 351 (483)
T 3dgh_A 304 QK-DKIPVDSQ--EATNVANIYAVGDIIYGKPELTP-VAVLAGRLLARRLYG 351 (483)
T ss_dssp BT-TBBCCCTT--CBCSSTTEEECSTTBTTSCCCHH-HHHHHHHHHHHHHHS
T ss_pred cC-CEEEECcC--CccCCCCEEEEEcccCCCCccHH-HHHHHHHHHHHHHcC
Confidence 88 99999988 78999999999999854 54444 799999999999974
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-30 Score=258.37 Aligned_cols=278 Identities=18% Similarity=0.240 Sum_probs=190.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHH-------HHHHHHhcCCeEEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN-------QFSRVVQHERCSFF 90 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~-------~~~~~~~~~~v~~~ 90 (483)
..++|+|||||+||+++|..|++.+++.+|+|||+.+.+.. .. |. ..+.+.. .+. .+.+.+++++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~----~~-~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~~ 77 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY----DR-PP--LSKDFMAHGDAEKIRLD-CKRAPEVEWL 77 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB----CS-GG--GGTHHHHHCCGGGSBCC-CTTSCSCEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcc----cC-CC--CCHHHhCCCchhhhhHH-HHHHCCCEEE
Confidence 45799999999999999999999985557999999876421 10 10 0011110 011 3456789998
Q ss_pred eCeEE-c-----eEEEecce-eeccCEEEEccCCCCCCCCCC-CCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeE
Q 011535 91 GNVTL-G-----SSVSLSEL-RQLYHVVVLAYGAESDRALGI-PGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA 162 (483)
Q Consensus 91 ~~~~v-~-----~~~~~~~~-~~~yd~vvlAtG~~~~~~~~i-pg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~v 162 (483)
.++.+ . ..+.+.++ ...||+||+|||+ .++.+++ ||.+ +++++......... +...+..+++|
T Consensus 78 ~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~i~~G~~-~~v~~~~~~~~~~~-------l~~~~~~~~~v 148 (408)
T 2gqw_A 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGA-APRALPTLQGAT-MPVHTLRTLEDARR-------IQAGLRPQSRL 148 (408)
T ss_dssp ETCCEEEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTCS-SCEEECCSHHHHHH-------HHTTCCTTCEE
T ss_pred cCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCccCCCC-CcEEEECCHHHHHH-------HHHHhhcCCeE
Confidence 88643 2 23555444 3579999999999 5777788 8877 67765433221100 00012247899
Q ss_pred EEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccc
Q 011535 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (483)
Q Consensus 163 vVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~ 242 (483)
+|||+|++|+|+|..|.+ .+ .+|+++.+.+.+.......
T Consensus 149 vViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~-------------------- 187 (408)
T 2gqw_A 149 LIVGGGVIGLELAATART--------------------AG-VHVSLVETQPRLMSRAAPA-------------------- 187 (408)
T ss_dssp EEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTSCH--------------------
T ss_pred EEECCCHHHHHHHHHHHh--------------------CC-CEEEEEEeCCcccccccCH--------------------
Confidence 999999999999999986 34 4799999987643211111
Q ss_pred cCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCce
Q 011535 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (483)
Q Consensus 243 ~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~ 322 (483)
.....+.+.+. +.||+++++..+.++. . + .+++.
T Consensus 188 -------------~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~---~---~v~~~------------ 221 (408)
T 2gqw_A 188 -------------TLADFVARYHA-------------AQGVDLRFERSVTGSV--D---G---VVLLD------------ 221 (408)
T ss_dssp -------------HHHHHHHHHHH-------------HTTCEEEESCCEEEEE--T---T---EEEET------------
T ss_pred -------------HHHHHHHHHHH-------------HcCcEEEeCCEEEEEE--C---C---EEEEC------------
Confidence 11222223332 6789999999998885 2 2 33331
Q ss_pred eeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---c----
Q 011535 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---G---- 395 (483)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---~---- 395 (483)
+| ++++||.||+|+|++|+. ++.+..|+..+ +| +.+|++ ++|+.|+|||+|||+..+. |
T Consensus 222 ----~g--~~i~~D~vi~a~G~~p~~----~l~~~~gl~~~-~g-i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~ 287 (408)
T 2gqw_A 222 ----DG--TRIAADMVVVGIGVLAND----ALARAAGLACD-DG-IFVDAY--GRTTCPDVYALGDVTRQRNPLSGRFER 287 (408)
T ss_dssp ----TS--CEEECSEEEECSCEEECC----HHHHHHTCCBS-SS-EECCTT--CBCSSTTEEECGGGEEEEETTTTEEEC
T ss_pred ----CC--CEEEcCEEEECcCCCccH----HHHHhCCCCCC-CC-EEECCC--CccCCCCEEEEEEEEEecCccCCceee
Confidence 22 379999999999999986 35555677776 56 889887 7799999999999986542 1
Q ss_pred --hhHhhHHHHHHHHHHHHH
Q 011535 396 --IIATNLYCAEETVASISE 413 (483)
Q Consensus 396 --~~~~a~~~g~~~a~~I~~ 413 (483)
....|+.||+.+|.+|..
T Consensus 288 ~~~~~~A~~~g~~aa~~i~g 307 (408)
T 2gqw_A 288 IETWSNAQNQGIAVARHLVD 307 (408)
T ss_dssp CCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHhcC
Confidence 234799999999999974
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=265.54 Aligned_cols=309 Identities=13% Similarity=0.102 Sum_probs=190.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-CceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-GLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-gl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~- 96 (483)
.|+|||||||+||++||.+|++.+++++|+|||++++.+ ....+.++.+....+++...+.+++++.+++|+.+.+..
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~I 81 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESI 81 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEE
Confidence 368999999999999999999988889999999988632 222222223334444554455667777899999887653
Q ss_pred ----eEEEeccee-eccCEEEEccCCCCCCCCCCCCCC--C---CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 97 ----SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED--L---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 97 ----~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~--~---~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
+.++++++. ..||+||||||+. . .+++||.+ . ..+.++..+...+.. +...+.++|+|
T Consensus 82 d~~~~~V~~~~g~~i~YD~LViAtG~~-~-~~~i~G~~e~~~~~~~~~~a~~~~~~l~~----------~~~~~~~vv~g 149 (430)
T 3hyw_A 82 DPDANTVTTQSGKKIEYDYLVIATGPK-L-VFGAEGQEENSTSICTAEHALETQKKLQE----------LYANPGPVVIG 149 (430)
T ss_dssp ETTTTEEEETTCCEEECSEEEECCCCE-E-ECCSBTHHHHSCCCSSHHHHHHHHHHHHH----------HHHSCCCEEEE
T ss_pred ECCCCEEEECCCCEEECCEEEEeCCCC-c-cCCccCcccCcCCcccHHHHHHHHHHHHh----------hccCCceEEEe
Confidence 346676664 5799999999984 3 34678753 1 111122221111110 11233455555
Q ss_pred CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCc---cEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccccc
Q 011535 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (483)
Q Consensus 167 ~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~---~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~ 243 (483)
+| .|++++..+.+ +.......+++.+. -+|+++...+.+ ..|.
T Consensus 150 g~-~gve~~~~~~e---------~a~~~~~~l~~~g~~~~v~v~~~~~~~~l-~~~~----------------------- 195 (430)
T 3hyw_A 150 AI-PGVSCFGPAYE---------FALMLHYELKKRGIRYKVPMTFITSEPYL-GHFG----------------------- 195 (430)
T ss_dssp EC-TTCCCCHHHHH---------HHHHHHHHHHHTTCGGGCCEEEECSSSST-TCTT-----------------------
T ss_pred CC-CcEEEhHHHHH---------HHHHHHHHHHHhcccccceeeeecccchh-hhcc-----------------------
Confidence 54 34444433321 11111122333332 246665544321 1111
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCcee
Q 011535 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (483)
Q Consensus 244 ~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~ 323 (483)
+. ..+...+.+.+.+. ++||+++++..+.++. . + .+.+..
T Consensus 196 --~~-----~~~~~~~~l~~~l~-------------~~GV~~~~~~~v~~v~--~---~---~~~~~~------------ 235 (430)
T 3hyw_A 196 --VG-----GIGASKRLVEDLFA-------------ERNIDWIANVAVKAIE--P---D---KVIYED------------ 235 (430)
T ss_dssp --TT-----CSTTHHHHHHHHHH-------------HTTCEEECSCEEEEEC--S---S---EEEEEC------------
T ss_pred --ch-----hhHHHHHHHHHHHH-------------hCCeEEEeCceEEEEe--C---C---ceEEEe------------
Confidence 00 00111222223333 6799999999999986 2 2 233332
Q ss_pred eccCCceEEEecCeEEEeeecCCCCCCCCCccCCC--CcccCCCCeeeecCCCCCCcccCceeeeccCCCCC--------
Q 011535 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHK--GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------- 393 (483)
Q Consensus 324 ~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~--g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~-------- 393 (483)
.+|+.+++++|++||++|++|++ +.... .+..+.+|++.+|+++ +.+++|+|||+|||+.-|
T Consensus 236 --~~g~~~~i~~d~vi~~~G~~~~~-----~~~~~~~~l~~~~~g~i~vd~~l-q~t~~~~IfAiGD~a~~p~~~~~~~~ 307 (430)
T 3hyw_A 236 --LNGNTHEVPAKFTMFMPSFQGPE-----VVASAGDKVANPANKMVIVNRCF-QNPTYKNIFGVGVVTAIPPIEKTPIP 307 (430)
T ss_dssp --TTSCEEEEECSEEEEECEEECCH-----HHHTTCTTTBCTTTCCBCCCTTS-BCSSSTTEEECSTTBCCCCSSCCSSC
T ss_pred --eCCCceEeecceEEEeccCCCch-----HHHhcccccccCCceEEEecccc-cCCCCCCEEEeccEEecCCcccCcCc
Confidence 24666799999999999999975 22222 2344557889999985 569999999999998532
Q ss_pred ----cchhHhhHHHHHHHHHHHHHHHhcCcCCC
Q 011535 394 ----TGIIATNLYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 394 ----~~~~~~a~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
.... .|.+||+.+|+||++.+.+.+.+.
T Consensus 308 ~~~pk~a~-~A~~qg~~~A~Ni~~~l~g~~~~~ 339 (430)
T 3hyw_A 308 TGVPKTGM-MIEQMAMAVAHNIVNDIRNNPDKY 339 (430)
T ss_dssp CCCCCCHH-HHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CccchHHH-HHHHHHHHHHHHHHHHhcCCCCCc
Confidence 2223 599999999999999999886543
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=248.23 Aligned_cols=265 Identities=14% Similarity=0.099 Sum_probs=181.8
Q ss_pred CeEEEECccHHHHHHHHHHHh---cCCCCe---EEEEecCCCCCCceeccc----C------------------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQ---VDIIDRLPTPFGLVRSGV----A------------------------ 65 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~---~~~~~~---v~lie~~~~~ggl~~~g~----~------------------------ 65 (483)
++|+||||||||+++|..|++ .+ .+ |+|||+.+.+||.+.+.. .
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~ 80 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE 80 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence 699999999999999999999 88 88 999999998888766420 0
Q ss_pred --------------CCCCChHHHHHHHHHHHhcCCeE--EEeCeEEce----------EEEecc------eeeccCEEEE
Q 011535 66 --------------PDHPETKIVINQFSRVVQHERCS--FFGNVTLGS----------SVSLSE------LRQLYHVVVL 113 (483)
Q Consensus 66 --------------p~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~----------~~~~~~------~~~~yd~vvl 113 (483)
+.++...++..++.+.+++.++. +++++.|.. .+++.+ ....||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVv 160 (464)
T 2xve_A 81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC 160 (464)
T ss_dssp BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEE
Confidence 12233456777788887777776 766765421 344433 2346999999
Q ss_pred ccCC-CCCCCCCCCCCCC-CC-eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCcccccccc
Q 011535 114 AYGA-ESDRALGIPGEDL-IG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190 (483)
Q Consensus 114 AtG~-~~~~~~~ipg~~~-~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di 190 (483)
|||. ..|+.+.+||.+. ++ ++++.++... ... .+++|+|||+|++|+|+|..|++
T Consensus 161 AtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~-----------~~~-~~k~VvVVG~G~sg~eiA~~l~~---------- 218 (464)
T 2xve_A 161 CTGHFSTPYVPEFEGFEKFGGRILHAHDFRDA-----------LEF-KDKTVLLVGSSYSAEDIGSQCYK---------- 218 (464)
T ss_dssp CCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCG-----------GGG-TTSEEEEECCSTTHHHHHHHHHH----------
T ss_pred CCCCCCCCccCCCCCcccCCceEEehhhhCCH-----------hHc-CCCEEEEEcCCCCHHHHHHHHHH----------
Confidence 9994 2677788998752 33 4555543311 012 57999999999999999999986
Q ss_pred chHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHH
Q 011535 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAA 270 (483)
Q Consensus 191 ~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~ 270 (483)
. .++|+++.|++..... +
T Consensus 219 ----------~-g~~V~li~~~~~~~~~---------------------------~------------------------ 236 (464)
T 2xve_A 219 ----------Y-GAKKLISCYRTAPMGY---------------------------K------------------------ 236 (464)
T ss_dssp ----------T-TCSEEEEECSSCCCCC---------------------------C------------------------
T ss_pred ----------h-CCeEEEEEECCCCCCC---------------------------C------------------------
Confidence 3 3579999988643100 0
Q ss_pred hcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC
Q 011535 271 SASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN 350 (483)
Q Consensus 271 ~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~ 350 (483)
...+|.++ ..+.++. + + +|.+. +| +++++|.||+|||++|+.
T Consensus 237 --------~~~~V~~~--~~V~~i~--~--~----~V~~~----------------dG--~~i~~D~Vi~atG~~p~~-- 278 (464)
T 2xve_A 237 --------WPENWDER--PNLVRVD--T--E----NAYFA----------------DG--SSEKVDAIILCTGYIHHF-- 278 (464)
T ss_dssp --------CCTTEEEC--SCEEEEC--S--S----EEEET----------------TS--CEEECSEEEECCCBCCCC--
T ss_pred --------CCCceEEc--CCeEEEe--C--C----EEEEC----------------CC--CEEeCCEEEECCCCCCCC--
Confidence 02356665 5566664 2 2 23332 23 268999999999999975
Q ss_pred CCCccCC-CCcccCCCCeee-ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 351 GLPFDNH-KGIVPNIRGRVL-KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 351 ~l~~~~~-~g~~~~~~G~v~-v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
+|... .++.++++|++. ..... +.++.|+|||+||+..++. ...+..||+.+|.+|..
T Consensus 279 --~~l~~~~gl~~~~~~~v~~~~~~~-~~t~~p~i~aiGd~~~~~~--~~~a~~qa~~~a~~l~G 338 (464)
T 2xve_A 279 --PFLNDDLRLVTNNRLWPLNLYKGV-VWEDNPKFFYIGMQDQWYS--FNMFDAQAWYARDVIMG 338 (464)
T ss_dssp --TTBCTTTCCCCCSSSCCSSEETTT-EESSSTTEEECSCSCCSSC--HHHHHHHHHHHHHHHTT
T ss_pred --CCcCcccccccCCCcccccccceE-ecCCCCCEEEEeCcccccc--hHHHHHHHHHHHHHHcC
Confidence 34443 577777666662 11222 4588999999999976542 33578888888887753
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=255.25 Aligned_cols=312 Identities=15% Similarity=0.121 Sum_probs=201.9
Q ss_pred CCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCC-CCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~-ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+++|+|||||+||+++|..|++ .+ ++|+|||+.+.. +......+..+....+++...+.++++..+++++.+..
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g--~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v 81 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSG--HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSA 81 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGG--SEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCc--CEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEE
Confidence 4799999999999999999999 56 999999998853 21122222234455666666677788888999987755
Q ss_pred Ece-----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCCC--CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 95 LGS-----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 95 v~~-----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~--~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
... .+.++++. ..||+||+|||+ .+..+.+||.+.. ..++...+......... +. .+...++++|||
T Consensus 82 ~~id~~~~~V~~~~g~~i~~d~lviAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~---~~-~~~~~~~~vVVG 156 (437)
T 3sx6_A 82 EQIDAEAQNITLADGNTVHYDYLMIATGP-KLAFENVPGSDPHEGPVQSICTVDHAERAFAE---YQ-ALLREPGPIVIG 156 (437)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCC-EECGGGSTTCSTTTSSEECCSSHHHHHHHHHH---HH-HHHHSCCCEEEE
T ss_pred EEEEcCCCEEEECCCCEEECCEEEECCCC-CcCcccCCCCCcccCcceecccccHHHHHHHH---HH-HHHhCCCEEEEE
Confidence 432 35555554 579999999999 5677788887632 22221111110000000 00 000134578999
Q ss_pred CCchH------HHHHHHHhcCCccccccccchHHHHHHhcCCcc---E-EEEEeecCcccccCCHHHHHHHhcCCCeeEE
Q 011535 167 QGNVA------LDVARILLRPTEELATTDIASYAWTALEGSSIR---K-VYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (483)
Q Consensus 167 ~G~~g------~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~---~-V~li~r~~~~~~~f~~~el~~~~~~~~~~~~ 236 (483)
+|+.| +|+|..++. .+++.+.+ + |+++.+.+.+.. +.
T Consensus 157 gG~~~g~~G~~~E~a~~la~----------------~l~~~g~~~~~~~Vtlv~~~~~~~~-~~---------------- 203 (437)
T 3sx6_A 157 AMAGASCFGPAYEYAMIVAS----------------DLKKRGMRDKIPSFTFITSEPYIGH-LG---------------- 203 (437)
T ss_dssp ECTTCCCCHHHHHHHHHHHH----------------HHHHTTCGGGCSCEEEEESSSSTTC-TT----------------
T ss_pred cCCCCCcCcHHHHHHHHHHH----------------HHHHcCCcccCcEEEEEcCCccccc-cc----------------
Confidence 96654 999977653 23334543 2 999998864311 00
Q ss_pred eccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC
Q 011535 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (483)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~ 316 (483)
++.. +.....+.+.+. ++||+++++..+.++. . + .+.+....
T Consensus 204 --------l~~~------~~~~~~~~~~l~-------------~~gI~~~~~~~v~~v~--~--~----~v~~~~~~--- 245 (437)
T 3sx6_A 204 --------IQGV------GDSKGILTKGLK-------------EEGIEAYTNCKVTKVE--D--N----KMYVTQVD--- 245 (437)
T ss_dssp --------TTCC------TTHHHHHHHHHH-------------HTTCEEECSEEEEEEE--T--T----EEEEEEEC---
T ss_pred --------cCcc------hHHHHHHHHHHH-------------HCCCEEEcCCEEEEEE--C--C----eEEEEecc---
Confidence 0000 111222333333 6799999999999997 3 2 23343311
Q ss_pred CCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCc-ccCceeeeccCCCC---
Q 011535 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWLKRG--- 392 (483)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t-~~p~vya~Gd~~~g--- 392 (483)
.+|+ ++++.++++|++++++|++++. ++.+..++ .+++|++.+|++ +++ ++|+|||+|||+..
T Consensus 246 -~~g~-----~~~~~~i~~D~vv~~~g~~~~~----~~~~~~gl-~~~~G~i~Vd~~--l~t~~~~~Ifa~GD~~~~~~~ 312 (437)
T 3sx6_A 246 -EKGE-----TIKEMVLPVKFGMMIPAFKGVP----AVAGVEGL-CNPGGFVLVDEH--QRSKKYANIFAAGIAIAIPPV 312 (437)
T ss_dssp -TTSC-----EEEEEEEECSEEEEECCEECCH----HHHTSTTT-BCTTSCBCBCTT--SBBSSCTTEEECGGGBCCCCS
T ss_pred -cCCc-----cccceEEEEeEEEEcCCCcCch----hhhccccc-cCCCCcEEeChh--ccCCCCCCEEEEEEEeccCCc
Confidence 0111 1225689999999999999865 23333566 678899999997 555 89999999999863
Q ss_pred ---------CcchhHhhHHHHHHHHHHHHHHHhcCcCCC
Q 011535 393 ---------PTGIIATNLYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 393 ---------~~~~~~~a~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
|.... .|+.||+.+|.||.++|.+.++..
T Consensus 313 ~~~~~~~~~pk~~~-~A~~qg~~aA~ni~~~l~g~~~~~ 350 (437)
T 3sx6_A 313 ETTPVPTGAPKTGY-MIESMVSAAVHNIKADLEGRKGEQ 350 (437)
T ss_dssp CCCSSCCCCCCCHH-HHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCcCCCCCCcHHH-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 23344 699999999999999999887665
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=239.80 Aligned_cols=289 Identities=12% Similarity=0.105 Sum_probs=185.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceec-----------------ccC---------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS-----------------GVA--------------- 65 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~-----------------g~~--------------- 65 (483)
.++|+|||||+||+++|..|++.+ . +|+|||+.+ +||.+.+ ++.
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF 80 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence 468999999999999999999998 8 999999987 5553311 110
Q ss_pred -CCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--------eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 011535 66 -PDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (483)
Q Consensus 66 -p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~--------~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a 136 (483)
..+....++..++.+.++..+++++.++.+. ..+...+....||+||+|||+. +. +.+|+ ..+++.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~-~~-p~ip~---~~~~~~ 155 (369)
T 3d1c_A 81 NEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDY-NF-PKKPF---KYGIHY 155 (369)
T ss_dssp CCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCST-TS-BCCCS---SSCEEG
T ss_pred cccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCC-Cc-cCCCC---Cceech
Confidence 0112334566777778888899998886442 1233444445799999999984 33 35665 234444
Q ss_pred ceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
..+... ..+ .+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+.
T Consensus 156 ~~~~~~-----------~~~-~~~~vvVvG~G~~g~e~a~~l~~--------------------~g-~~V~lv~~~~~~~ 202 (369)
T 3d1c_A 156 SEIEDF-----------DNF-NKGQYVVIGGNESGFDAAYQLAK--------------------NG-SDIALYTSTTGLN 202 (369)
T ss_dssp GGCSCG-----------GGS-CSSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECC-----
T ss_pred hhcCCh-----------hhc-CCCEEEEECCCcCHHHHHHHHHh--------------------cC-CeEEEEecCCCCC
Confidence 332210 012 46899999999999999999986 33 5899999986542
Q ss_pred cc-CCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce-EEEeecCCccee
Q 011535 217 AA-CTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE-LHFVFFRKPDSF 294 (483)
Q Consensus 217 ~~-f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~-i~~~~~~~~~~v 294 (483)
.+ +. +.. ...+...+++.+.+. +.| |+++++..+.++
T Consensus 203 ~~~~d-------------------------~~~---~~~~~~~~~l~~~l~-------------~~g~v~~~~~~~v~~i 241 (369)
T 3d1c_A 203 DPDAD-------------------------PSV---RLSPYTRQRLGNVIK-------------QGARIEMNVHYTVKDI 241 (369)
T ss_dssp ------------------------------CTT---SCCHHHHHHHHHHHH-------------TTCCEEEECSCCEEEE
T ss_pred CCCCC-------------------------CCc---cCCHHHHHHHHHHHh-------------hCCcEEEecCcEEEEE
Confidence 11 00 000 000122233333333 566 999999999998
Q ss_pred ecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCC
Q 011535 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 295 ~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
. . +++. ..+++. +|+ ....+|.||+|+|++|+. ++....++. +++|++.+++..
T Consensus 242 ~--~-~~~~-~~v~~~----------------~g~-~~~~~d~vi~a~G~~~~~----~~~~~~~~~-~~~g~i~v~~~~ 295 (369)
T 3d1c_A 242 D--F-NNGQ-YHISFD----------------SGQ-SVHTPHEPILATGFDATK----NPIVQQLFV-TTNQDIKLTTHD 295 (369)
T ss_dssp E--E-ETTE-EEEEES----------------SSC-CEEESSCCEECCCBCGGG----SHHHHHHSC-CTTSCCCBCTTS
T ss_pred E--e-cCCc-eEEEec----------------CCe-EeccCCceEEeeccCCcc----chhhhhhcc-CCCCCEEechhh
Confidence 5 2 1222 123221 232 233579999999999976 122222344 678989888766
Q ss_pred CCCcccCceeeeccCCCCCc---chhHhhHHHHHHHHHHHHHHHh
Q 011535 375 DSSQVENGLYVCGWLKRGPT---GIIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g~~---~~~~~a~~~g~~~a~~I~~~l~ 416 (483)
++|+.|+|||+|||+..+. ..+..+..+|..+|.+|...+.
T Consensus 296 -~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~ 339 (369)
T 3d1c_A 296 -ESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREG 339 (369)
T ss_dssp -BBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTT
T ss_pred -cccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccC
Confidence 7889999999999986432 2233466788999999887653
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=259.34 Aligned_cols=290 Identities=14% Similarity=0.205 Sum_probs=185.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-C-------CCCCce-ecccC----------------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-P-------TPFGLV-RSGVA---------------------- 65 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~-------~~ggl~-~~g~~---------------------- 65 (483)
...++|+||||||||++||..|++.+ .+|+|||+. + ..||.+ ..++.
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g--~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYG--AKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECCCccHHHHHHHHHhCC--CeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 45689999999999999999999999 999999973 3 245421 11111
Q ss_pred ---CC---CCChHHHHHHH-----------HHHHhcCCeEEEeCeEEc---eEEEe--cce---eeccCEEEEccCCCCC
Q 011535 66 ---PD---HPETKIVINQF-----------SRVVQHERCSFFGNVTLG---SSVSL--SEL---RQLYHVVVLAYGAESD 120 (483)
Q Consensus 66 ---p~---~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~v~---~~~~~--~~~---~~~yd~vvlAtG~~~~ 120 (483)
+. .....++..++ ...+...+++++.+.... ..+.+ .++ ...||+||||||+ .|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs-~p 261 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGE-RP 261 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCE-EE
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCC-CC
Confidence 11 11122222222 122345678887654321 12222 233 3469999999998 67
Q ss_pred CCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc
Q 011535 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (483)
Q Consensus 121 ~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~ 200 (483)
+.|++||.+.. ++++.++.. . . ..+++++|||+|++|+|+|..|.+
T Consensus 262 ~~p~i~G~~~~-~~~~~~~~~----~------~---~~~~~vvViGgG~~g~E~A~~l~~-------------------- 307 (598)
T 2x8g_A 262 KYPEIPGAVEY-GITSDDLFS----L------P---YFPGKTLVIGASYVALECAGFLAS-------------------- 307 (598)
T ss_dssp CCCSSTTHHHH-CEEHHHHTT----C------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------
T ss_pred CCCCCCCcccc-eEcHHHHhh----C------c---cCCCEEEEECCCHHHHHHHHHHHH--------------------
Confidence 77888885421 223332211 1 0 145789999999999999999986
Q ss_pred CCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCc
Q 011535 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ 280 (483)
Q Consensus 201 ~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~ 280 (483)
.+ .+|+++.|+ .+...+. +.....+.+.+. +
T Consensus 308 ~g-~~Vtlv~~~-~~l~~~d----------------------------------~~~~~~~~~~l~-------------~ 338 (598)
T 2x8g_A 308 LG-GDVTVMVRS-ILLRGFD----------------------------------QQMAEKVGDYME-------------N 338 (598)
T ss_dssp TT-CCEEEEESS-CSSTTSC----------------------------------HHHHHHHHHHHH-------------H
T ss_pred cC-CEEEEEECC-cCcCcCC----------------------------------HHHHHHHHHHHH-------------h
Confidence 44 469999987 3322121 111112223332 5
Q ss_pred ceEEEeecCCcceeecc------cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCc
Q 011535 281 RELHFVFFRKPDSFLES------NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~------~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~ 354 (483)
.||+++++..+.++... .++.+.+. +.+.. .+|+..++++|.||+|+|++|+. .+
T Consensus 339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~--------------~~g~~~~~~~D~vi~a~G~~p~~----~~ 399 (598)
T 2x8g_A 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY--------------TDGKKFEEEFETVIFAVGREPQL----SK 399 (598)
T ss_dssp TTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE--------------TTSCEEEEEESEEEECSCEEECG----GG
T ss_pred CCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe--------------CCCcEEeccCCEEEEEeCCcccc----Cc
Confidence 68999998877777410 00112221 11110 13443456799999999999986 22
Q ss_pred --cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 355 --DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 355 --~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+..|+.++++|+|.+|++ ++|+.|+|||+|||+.+.......|+.+|+.+|.+|..
T Consensus 400 l~~~~~gl~~~~~G~i~vd~~--~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 458 (598)
T 2x8g_A 400 VLCETVGVKLDKNGRVVCTDD--EQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFA 458 (598)
T ss_dssp TBCGGGCCCBCTTSCBCCCTT--SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCceECCCCcEEeCCC--CcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhc
Confidence 2456788888999999988 77999999999999665333444799999999999975
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-28 Score=267.14 Aligned_cols=286 Identities=16% Similarity=0.170 Sum_probs=202.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc---cCCCCCChHHHHHHHHHHHhc-CCeEEEeCeE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---VAPDHPETKIVINQFSRVVQH-ERCSFFGNVT 94 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g---~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 94 (483)
.++|+||||||||++||..|++.+ ++|+|||+++.+||.+.+. ..++. ...++...+.+.+.. .+++++.++.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~GG~~~~~~k~~i~~~-~~~~~~~~~~~~l~~~~~v~~~~~~~ 204 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAGGTLLDTAGEQIDGM-DSSAWIEQVTSELAEAEETTHLQRTT 204 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGGGSSCCEETTE-EHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCCceeccCCccccCCC-CHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 468999999999999999999998 9999999999998876631 11222 234444444444444 4899988866
Q ss_pred EceE--------E-------Ee--------cce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCC
Q 011535 95 LGSS--------V-------SL--------SEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK 150 (483)
Q Consensus 95 v~~~--------~-------~~--------~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~ 150 (483)
+... + .+ ... ...||+||||||+ .++++++||.+.++++++..+..+++...
T Consensus 205 V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs-~p~~~~ipG~~~~gv~~~~~~~~~l~~~~--- 280 (965)
T 2gag_A 205 VFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA-HERPIVFENNDRPGIMLAGAVRSYLNRYG--- 280 (965)
T ss_dssp EEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE-EECCCCCBTCCSTTEEEHHHHHHHHHTTC---
T ss_pred EEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC-ccCCCCCCCCCCCCEEEhHHHHHHHHhcC---
Confidence 5211 0 01 111 2469999999999 57888899999999998876554443221
Q ss_pred CCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcC
Q 011535 151 NLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI 230 (483)
Q Consensus 151 ~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~ 230 (483)
...+++|+|||+|++|+|+|..|.+ .+.+ |+++.+++.+..
T Consensus 281 -----~~~gk~vvViGgG~~g~E~A~~L~~--------------------~G~~-Vtvv~~~~~~~~------------- 321 (965)
T 2gag_A 281 -----VRAGARIAVATTNDSAYELVRELAA--------------------TGGV-VAVIDARSSISA------------- 321 (965)
T ss_dssp -----EESCSSEEEEESSTTHHHHHHHHGG--------------------GTCC-SEEEESCSSCCH-------------
T ss_pred -----CCCCCeEEEEcCCHHHHHHHHHHHH--------------------cCCc-EEEEECCCccch-------------
Confidence 1146899999999999999999986 4655 999998864310
Q ss_pred CCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEe
Q 011535 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~ 310 (483)
. .+.+. +.||+++++..+.++. +++++++..|++.
T Consensus 322 -------------------------~-----~~~l~-------------~~GV~v~~~~~v~~i~--~~~~~~v~~v~~~ 356 (965)
T 2gag_A 322 -------------------------A-----AAQAV-------------ADGVQVISGSVVVDTE--ADENGELSAIVVA 356 (965)
T ss_dssp -------------------------H-----HHHHH-------------HTTCCEEETEEEEEEE--ECTTSCEEEEEEE
T ss_pred -------------------------h-----HHHHH-------------hCCeEEEeCCEeEEEe--ccCCCCEEEEEEE
Confidence 0 12222 6799999999999997 4115677777775
Q ss_pred eeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCC----CcccCceeee
Q 011535 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS----SQVENGLYVC 386 (483)
Q Consensus 311 ~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~----~t~~p~vya~ 386 (483)
+. +..+ .+|+.++++||+||+|+|++|+. .+.. ..+|.+.+|+.+ . .|+.|+|||+
T Consensus 357 ~~----~~~~-----~~G~~~~i~~D~Vv~a~G~~P~~----~l~~------~~~g~i~vd~~~-~~~v~~ts~p~IyAa 416 (965)
T 2gag_A 357 EL----DEAR-----ELGGTQRFEADVLAVAGGFNPVV----HLHS------QRQGKLDWDTTI-HAFVPADAVANQHLA 416 (965)
T ss_dssp EE----CTTC-----CEEEEEEEECSEEEEECCEEECC----HHHH------HTTCCEEEETTT-TEEEECSCCTTEEEC
T ss_pred ec----cccC-----CCCceEEEEcCEEEECCCcCcCh----HHHH------hCCCcEEEcCcc-cccccCCCCCCEEEE
Confidence 41 0000 01333689999999999999986 2322 124667777653 2 2789999999
Q ss_pred ccCCCCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 387 GWLKRGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 387 Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
|||+.. .+.. .|+.+|+.+|.+|..++..
T Consensus 417 GD~a~~-~~l~-~A~~~G~~aA~~i~~~lg~ 445 (965)
T 2gag_A 417 GAMTGR-LDTA-SALSTGAATGAAAATAAGF 445 (965)
T ss_dssp GGGGTC-CSHH-HHHHHHHHHHHHHHHHTTC
T ss_pred EecCCc-hhHH-HHHHHHHHHHHHHHHHcCC
Confidence 999754 4455 7999999999999998863
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=249.92 Aligned_cols=285 Identities=16% Similarity=0.170 Sum_probs=183.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC--------CCCC-ceecccCCCC---------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFG-LVRSGVAPDH--------------------- 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~--------~~gg-l~~~g~~p~~--------------------- 68 (483)
.++|+||||||||+.||.++++.| .+|+|||+.. ..|| .++.|+.|..
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G--~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi 119 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHG--ARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTT--CCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence 379999999999999999999999 9999999753 2454 2334433310
Q ss_pred ----C--ChHHH-----------HHHHHHHHhcCCeEEEeCeEE---ceEEEe--c-----ceeeccCEEEEccCCCCCC
Q 011535 69 ----P--ETKIV-----------INQFSRVVQHERCSFFGNVTL---GSSVSL--S-----ELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 69 ----~--~~~~~-----------~~~~~~~~~~~~v~~~~~~~v---~~~~~~--~-----~~~~~yd~vvlAtG~~~~~ 121 (483)
. ....+ ...+...++..+++++.+... ...+.. . .....++++|||||+ .|.
T Consensus 120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs-~P~ 198 (542)
T 4b1b_A 120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC-RPH 198 (542)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE-EEC
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC-CCC
Confidence 0 01111 112233455667887766432 111221 1 112468999999999 566
Q ss_pred CCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC
Q 011535 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (483)
Q Consensus 122 ~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~ 201 (483)
.|+.++.+...++++.++..+ . ..+++++|||||++|+|+|..+.+ .
T Consensus 199 ~P~~~~~~~~~~~ts~~~l~l----------~---~lP~~lvIIGgG~IGlE~A~~~~~--------------------l 245 (542)
T 4b1b_A 199 IPDDVEGAKELSITSDDIFSL----------K---KDPGKTLVVGASYVALECSGFLNS--------------------L 245 (542)
T ss_dssp CCSSSBTHHHHCBCHHHHTTC----------S---SCCCSEEEECCSHHHHHHHHHHHH--------------------H
T ss_pred CCCcccCCCccccCchhhhcc----------c---cCCceEEEECCCHHHHHHHHHHHh--------------------c
Confidence 554444333334555554311 0 146899999999999999999986 5
Q ss_pred CccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011535 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (483)
Q Consensus 202 ~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~ 281 (483)
|. +||++.|.. ....+. . .+...+.+.|. ++
T Consensus 246 G~-~VTii~~~~-~L~~~D-----------------------------~-----ei~~~l~~~l~-------------~~ 276 (542)
T 4b1b_A 246 GY-DVTVAVRSI-VLRGFD-----------------------------Q-----QCAVKVKLYME-------------EQ 276 (542)
T ss_dssp TC-CEEEEESSC-SSTTSC-----------------------------H-----HHHHHHHHHHH-------------HT
T ss_pred CC-eEEEecccc-cccccc-----------------------------h-----hHHHHHHHHHH-------------hh
Confidence 65 589998753 322222 1 11122223333 67
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcc
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~ 361 (483)
||.++++..+.++. . .++.+ .+.+ .+..++++|.|++|+|.+||. .+|.+ +..|+.
T Consensus 277 gi~~~~~~~v~~~~--~-~~~~~-~v~~------------------~~~~~~~~D~vLvAvGR~Pnt-~~L~l-e~~gv~ 332 (542)
T 4b1b_A 277 GVMFKNGILPKKLT--K-MDDKI-LVEF------------------SDKTSELYDTVLYAIGRKGDI-DGLNL-ESLNMN 332 (542)
T ss_dssp TCEEEETCCEEEEE--E-ETTEE-EEEE------------------TTSCEEEESEEEECSCEEESC-GGGCG-GGTTCC
T ss_pred cceeecceEEEEEE--e-cCCeE-EEEE------------------cCCCeEEEEEEEEcccccCCc-cccCc-ccceee
Confidence 99999999998887 3 23322 1222 112367899999999999986 33322 456777
Q ss_pred cCCCCee-eecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 362 PNIRGRV-LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 362 ~~~~G~v-~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
++..|.+ .+|++ ++|+.|+|||+|||+.+.......|..+|+.++++|...
T Consensus 333 ~~~~~~~i~vd~~--~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 333 VNKSNNKIIADHL--SCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp EETTTTEECCCTT--SBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred ecccCceEecccc--ccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcC
Confidence 7766555 66665 889999999999998663333337999999999998753
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=245.51 Aligned_cols=307 Identities=14% Similarity=0.044 Sum_probs=185.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-ceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg-l~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.|||+||||||||++||.+|++.+++.+|+|||+++..+. .+.+.+..+....+++...+..+. ..+++|+.+.+...
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~-~~gv~~i~~~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLR-AHGIQVVHDSALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHH-HTTCEEECSCEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHH-HCCCEEEEeEEEEE
Confidence 5899999999999999999999888899999999876322 111112122223333332333333 35899998876643
Q ss_pred -----EEEeccee-eccCEEEEccCCCCCCCCCCCCCCCC----CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcC
Q 011535 98 -----SVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLI----GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (483)
Q Consensus 98 -----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~~~----~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~ 167 (483)
.+.+.++. ..||+||||||+ .+..+++||.+.. .++.......... ....-..+..+ ..+|+++
T Consensus 81 d~~~~~v~~~~g~~i~yd~LviAtG~-~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~-~~~v~~~ 154 (401)
T 3vrd_B 81 DPDKKLVKTAGGAEFAYDRCVVAPGI-DLLYDKIEGYSEALAAKLPHAWKAGEQTAL----LRRQLESMDDG-GVVIIAP 154 (401)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCE-EECGGGSBTCCSGGGGTSCCCSSCSHHHHH----HHHHHHHSCTT-CEEEEEC
T ss_pred EccCcEEEecccceeecceeeeccCC-ccccCCccCchhhcccCccceeccHHHHHH----HHHHHHhcccC-CcEEEec
Confidence 35555543 579999999999 5667788886521 1111110000000 00000001123 3444443
Q ss_pred Cc-------hHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecc
Q 011535 168 GN-------VALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (483)
Q Consensus 168 G~-------~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~ 239 (483)
|. .+.|++.++.. .++..+ ..+|+++.+.+.+.. ..
T Consensus 155 ~~~~i~~~~a~~e~~~~~a~----------------~~~~~~~~~~v~i~~~~~~~~~---~~----------------- 198 (401)
T 3vrd_B 155 PAPPFRCPPGPYERASQIAH----------------YLKAHKSKSKVIILDNSQTFSK---QA----------------- 198 (401)
T ss_dssp CSSSCBCTTHHHHHHHHHHH----------------HHHHHCTTCEEEEECSSSSCTT---HH-----------------
T ss_pred CCccEEeehHHHHHHHHHHH----------------HHHhcCCCCEEEEEcccccccc---cc-----------------
Confidence 33 34455544432 121222 357888877654310 00
Q ss_pred ccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCC
Q 011535 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (483)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~ 319 (483)
.+.+.+.+.. .....+.+|+++++..+..+. . ++....++
T Consensus 199 --------------------~~~~~~~~~~-----~~~l~~~gi~v~~~~~v~~v~--~--~~~~~~v~----------- 238 (401)
T 3vrd_B 199 --------------------QFTKGWERLY-----GFGTENALIEWHPGPDAAVVK--T--DTEAMTVE----------- 238 (401)
T ss_dssp --------------------HHHHHHHHHS-----CTTSTTCSEEEECTTTTCEEE--E--ETTTTEEE-----------
T ss_pred --------------------cccHHHHHHH-----HHHHHhcCcEEEeCceEEEEE--e--cccceEEE-----------
Confidence 0011121111 234457899999999888886 3 22111222
Q ss_pred CceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---Ccch
Q 011535 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGI 396 (483)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~ 396 (483)
+++++++++|+|++++|.+|+. +....++ .+++|+|.||++..+.+++|||||+|||+.+ |...
T Consensus 239 -------~~~g~~i~~D~vi~~~g~~~~~-----~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a 305 (401)
T 3vrd_B 239 -------TSFGETFKAAVINLIPPQRAGK-----IAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSA 305 (401)
T ss_dssp -------ETTSCEEECSEEEECCCEEECH-----HHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSH
T ss_pred -------cCCCcEEEeeEEEEecCcCCch-----hHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCCCCchH
Confidence 2233489999999999999865 4456676 5788999999863167899999999999753 3334
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCcCCC
Q 011535 397 IATNLYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 397 ~~~a~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
. .|..||+.+|+||++.|.+.+..+
T Consensus 306 ~-~A~~qa~v~A~ni~~~l~G~~~~~ 330 (401)
T 3vrd_B 306 Y-SANSQAKVAAAAVVALLKGEEPGT 330 (401)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred H-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4 699999999999999999875443
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=258.77 Aligned_cols=283 Identities=15% Similarity=0.093 Sum_probs=203.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccCCCCCChHHHHHHHHHHHhcC-CeEEEeCeE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHE-RCSFFGNVT 94 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~p~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 94 (483)
...++|+|||||||||++|..|++++ ++|+|||+++.+||.+.+ ...|+.....++..++...+... +++++.++.
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 466 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESP 466 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCC
T ss_pred cccceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCe
Confidence 35689999999999999999999999 999999999999987654 34477777778888888888876 899998865
Q ss_pred EceEEEeccee-eccCEEEEccCCCC-------CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEc
Q 011535 95 LGSSVSLSELR-QLYHVVVLAYGAES-------DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (483)
Q Consensus 95 v~~~~~~~~~~-~~yd~vvlAtG~~~-------~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 166 (483)
+. ..+.. ..||+||+|||+.. +..+++||.+..+++++.++.. . ....+++|+|||
T Consensus 467 v~----~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~---~---------~~~~g~~VvViG 530 (690)
T 3k30_A 467 MT----GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFA---G---------RLPDGKKVVVYD 530 (690)
T ss_dssp CC----HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHT---T---------CCCSSSEEEEEE
T ss_pred ec----HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhC---C---------CCCCCCEEEEEc
Confidence 42 22222 46999999999841 3456788887777777665442 1 122578999999
Q ss_pred --CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccC
Q 011535 167 --QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244 (483)
Q Consensus 167 --~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~ 244 (483)
+|.+|+|+|..|.+ .+ .+|+++.+.+.+...+..
T Consensus 531 ~ggG~~g~e~A~~L~~--------------------~g-~~Vtlv~~~~~l~~~~~~----------------------- 566 (690)
T 3k30_A 531 DDHYYLGGVVAELLAQ--------------------KG-YEVSIVTPGAQVSSWTNN----------------------- 566 (690)
T ss_dssp CSCSSHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTGGGGG-----------------------
T ss_pred CCCCccHHHHHHHHHh--------------------CC-CeeEEEeccccccccccc-----------------------
Confidence 99999999999986 33 589999988654211100
Q ss_pred CCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceee
Q 011535 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYA 324 (483)
Q Consensus 245 ~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~ 324 (483)
......+.+.+. +.||++++++.+.++. . ++ +.+..
T Consensus 567 ----------~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~----~~v~~------------- 602 (690)
T 3k30_A 567 ----------TFEVNRIQRRLI-------------ENGVARVTDHAVVAVG--A--GG----VTVRD------------- 602 (690)
T ss_dssp ----------GTCHHHHHHHHH-------------HTTCEEEESEEEEEEE--T--TE----EEEEE-------------
T ss_pred ----------chhHHHHHHHHH-------------HCCCEEEcCcEEEEEE--C--Ce----EEEEE-------------
Confidence 001112223332 6799999999999997 3 22 22221
Q ss_pred ccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHH
Q 011535 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCA 404 (483)
Q Consensus 325 ~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g 404 (483)
+.++++++++||.||+|+|++|+. .+....+. .+. +|+.|+||++|||+. +..+. .|+.+|
T Consensus 603 ~~~~~~~~i~aD~VV~A~G~~p~~----~l~~~l~~----~~~---------~t~~~~VyaiGD~~~-~~~~~-~A~~~g 663 (690)
T 3k30_A 603 TYASIERELECDAVVMVTARLPRE----ELYLDLVA----RRD---------AGEIASVRGIGDAWA-PGTIA-AAVWSG 663 (690)
T ss_dssp TTTCCEEEEECSEEEEESCEEECC----HHHHHHHH----HHH---------HTSCSEEEECGGGTS-CBCHH-HHHHHH
T ss_pred ccCCeEEEEECCEEEECCCCCCCh----HHHHHHhh----hhc---------ccCCCCEEEEeCCCc-hhhHH-HHHHHH
Confidence 124566789999999999999976 22221111 111 267899999999976 44454 699999
Q ss_pred HHHHHHHHHHHhcCcCCCCC
Q 011535 405 EETVASISEDLEQGVLASSS 424 (483)
Q Consensus 405 ~~~a~~I~~~l~~~~~~~~~ 424 (483)
+.+|.+|...|.+.+..++.
T Consensus 664 ~~aa~~i~~~l~g~~~~p~~ 683 (690)
T 3k30_A 664 RRAAEEFDAVLPSNDEVPFR 683 (690)
T ss_dssp HHHHHHTTCCCCCTTSCSSC
T ss_pred HHHHHHHHhhccCCCCCCcC
Confidence 99999999998877655553
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=261.82 Aligned_cols=293 Identities=17% Similarity=0.126 Sum_probs=194.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccCCCCCChHHHHHHHHHHHhc------CCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQH------ERCSF 89 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~p~~~~~~~~~~~~~~~~~~------~~v~~ 89 (483)
...++|+||||||||++||..|++.+ ++|+|||+.+.+||.+.+ ...|+.........++...+.. .++++
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i 464 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA 464 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEE
Confidence 45689999999999999999999999 999999999999988765 3446555444444444333332 25666
Q ss_pred EeCeEEceEEEeccee-eccCEEEEccCCCC-------CCCCCCCCCC--CCCeeecceeeeeecCCCCCCCCCCCCCCC
Q 011535 90 FGNVTLGSSVSLSELR-QLYHVVVLAYGAES-------DRALGIPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (483)
Q Consensus 90 ~~~~~v~~~~~~~~~~-~~yd~vvlAtG~~~-------~~~~~ipg~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 159 (483)
..+.. ++++++. ..||+||||||+.. +..+++||.+ .++++++.++.. .. ...+
T Consensus 465 ~~~~~----v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~---~~---------~~~g 528 (729)
T 1o94_A 465 LGQKP----MTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMD---GK---------KKIG 528 (729)
T ss_dssp CSCCC----CCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHH---CC---------SCCC
T ss_pred EeCeE----EehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhc---CC---------CCCC
Confidence 55432 2333332 46999999999842 4567899987 678888776542 11 1257
Q ss_pred CeEEEEc--CCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 160 DTAVILG--QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 160 ~~vvVIG--~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
++|+||| +|++|+|+|..|.+ .+ .+|+++.|++ +.... .
T Consensus 529 k~VvVIG~GgG~~g~e~A~~l~~--------------------~G-~~Vtlv~~~~-l~~~~---~-------------- 569 (729)
T 1o94_A 529 KRVVILNADTYFMAPSLAEKLAT--------------------AG-HEVTIVSGVH-LANYM---H-------------- 569 (729)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHH--------------------TT-CEEEEEESSC-TTHHH---H--------------
T ss_pred CeEEEEcCCCCchHHHHHHHHHH--------------------cC-CEEEEEeccc-ccccc---c--------------
Confidence 8999999 99999999999986 44 4899999987 32100 0
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC-
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG- 316 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~- 316 (483)
++. . ...+.+.|. ++||+++++..+.++. . ++ +.+......+
T Consensus 570 -------~~~-------~--~~~~~~~l~-------------~~GV~i~~~~~v~~i~--~--~~----v~~~~~~~~~~ 612 (729)
T 1o94_A 570 -------FTL-------E--YPNMMRRLH-------------ELHVEELGDHFCSRIE--P--GR----MEIYNIWGDGS 612 (729)
T ss_dssp -------HTT-------C--HHHHHHHHH-------------HTTCEEECSEEEEEEE--T--TE----EEEEETTCSCS
T ss_pred -------ccc-------c--HHHHHHHHH-------------hCCCEEEcCcEEEEEE--C--Ce----EEEEEecCCce
Confidence 000 0 111223332 6799999999999997 3 22 2222100000
Q ss_pred ----CCCC-ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC
Q 011535 317 ----GGPG-KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (483)
Q Consensus 317 ----~~~g-~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~ 391 (483)
++.+ +.+. ..++..+++||.||+|+|++|+. .+.+..+. .++++ ++|++|+|||+|||+.
T Consensus 613 ~~~~~~~~~~~~~-~~~~~~~i~aD~Vv~a~G~~p~~----~l~~~l~~--------~vd~~--~~t~~~~VyAiGD~~~ 677 (729)
T 1o94_A 613 KRTYRGPGVSPRD-ANTSHRWIEFDSLVLVTGRHSEC----TLWNELKA--------RESEW--AENDIKGIYLIGDAEA 677 (729)
T ss_dssp CCCCCCTTSCSSC-CCCCCEEEECSEEEEESCEEECC----HHHHHHHH--------TGGGT--GGGTCCEEEECGGGTS
T ss_pred EEecccccccccc-cCCcceeeeCCEEEECCCCCCCh----HHHHHHhh--------hcccc--cccCCCCeEEEeCccc
Confidence 0001 1011 13445579999999999999976 23221111 13454 6789999999999975
Q ss_pred CCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 392 GPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 392 g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
+..+. .|+.+|+.+|.+|..++....+
T Consensus 678 -~~~~~-~A~~~G~~aA~~i~~~l~~~~~ 704 (729)
T 1o94_A 678 -PRLIA-DATFTGHRVAREIEEANPQIAI 704 (729)
T ss_dssp -CCCHH-HHHHHHHHHHHTTTSSCTTSCC
T ss_pred -hhhHH-HHHHHHHHHHHHhhhhcccCCC
Confidence 55555 7999999999999887665444
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=241.17 Aligned_cols=290 Identities=13% Similarity=0.102 Sum_probs=187.1
Q ss_pred CeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCCCCce-ecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~ggl~-~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
++|+|||||+||+++|..|++ .+ .+|+|||+++.++... ...+.++.....++...+.+.+.+.+++++.+.+.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~ 79 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVE 79 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEE
Confidence 689999999999999999999 66 9999999998643211 11122233333444455667777789999888544
Q ss_pred ce-----EEEeccee-----eccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEE
Q 011535 96 GS-----SVSLSELR-----QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (483)
Q Consensus 96 ~~-----~~~~~~~~-----~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 165 (483)
.. .+.+.+.. ..||+||+|||+ .+..+.+||.+. ..++...+..... ....-.. ..++++||
T Consensus 80 ~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~-~~~~~~ipG~~~-~~~~~~~~~~~~~----~~~~l~~--~~~~~vVi 151 (409)
T 3h8l_A 80 KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGA-HLATELVKGWDK-YGYSVCEPEFATK----LREKLES--FQGGNIAI 151 (409)
T ss_dssp EEETTTTEEEEECTTSCEEEEECSEEEECCCC-EECGGGSBTHHH-HCEESSSTTHHHH----HHHHHHH--CCSEEEEE
T ss_pred EEeCCCCEEEEccCCcccceeeCCEEEECCCC-CcCccCCCChhh-cCcCcCCHHHHHH----HHHHHHH--hcCCeEEE
Confidence 22 34444333 569999999999 566667887542 1111111100000 0000000 12567799
Q ss_pred cCC-------------------c------hHHHHHHHHhcCCccccccccchHHHHHHhcCCc---cEEEEEeecCcccc
Q 011535 166 GQG-------------------N------VALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQA 217 (483)
Q Consensus 166 G~G-------------------~------~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~---~~V~li~r~~~~~~ 217 (483)
|+| . .++|+|..+.. .+++.+. .+|+++.+.+ ...
T Consensus 152 G~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~----------------~l~~~g~~~~~~v~~~~~~~-~l~ 214 (409)
T 3h8l_A 152 GSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHG----------------YFKKKGMLDKVHVTVFSPGE-YLS 214 (409)
T ss_dssp EECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHH----------------HHHTTTCTTTEEEEEECSSS-SST
T ss_pred EecccccCCCccccccccccCCCCcccCCHHHHHHHHHHH----------------HHHHcCCCCCeEEEEEeCCc-ccc
Confidence 999 2 47888876653 2333443 4899998876 221
Q ss_pred cCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecc
Q 011535 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (483)
Q Consensus 218 ~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~ 297 (483)
.+. +...+.+.+.+. ++||++++++.+.++.
T Consensus 215 ~~~----------------------------------~~~~~~~~~~l~-------------~~gV~~~~~~~v~~i~-- 245 (409)
T 3h8l_A 215 DLS----------------------------------PNSRKAVASIYN-------------QLGIKLVHNFKIKEIR-- 245 (409)
T ss_dssp TBC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCCEEEEC--
T ss_pred ccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEcCCceEEEC--
Confidence 111 112222233333 6789999999999996
Q ss_pred cCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCC--CcccCCCCeeeecCCCC
Q 011535 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHK--GIVPNIRGRVLKNISGD 375 (483)
Q Consensus 298 ~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~--g~~~~~~G~v~v~~~~~ 375 (483)
. + .+.+. +| +++++|+||+++|++|++ +.... ++ .+++|++.+|+.
T Consensus 246 ~--~----~v~~~----------------~g--~~~~~D~vi~a~G~~~~~-----~l~~~~~~l-~~~~G~i~vd~~-- 293 (409)
T 3h8l_A 246 E--H----EIVDE----------------KG--NTIPADITILLPPYTGNP-----ALKNSTPDL-VDDGGFIPTDLN-- 293 (409)
T ss_dssp S--S----EEEET----------------TS--CEEECSEEEEECCEECCH-----HHHTSCGGG-SCTTSCBCBBTT--
T ss_pred C--C----eEEEC----------------CC--CEEeeeEEEECCCCCccH-----HHHhccccC-cCCCCCEEeCcc--
Confidence 3 2 23321 22 379999999999999975 33444 33 467899999987
Q ss_pred CCc-ccCceeeeccCCC--CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 376 SSQ-VENGLYVCGWLKR--GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 376 ~~t-~~p~vya~Gd~~~--g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
+++ +.|+||++|||+. .+.... .|..||..+|.+|...|.++
T Consensus 294 ~~~~~~~~vfa~GD~~~~~~~~~~~-~A~~q~~~aa~~i~~~l~~~ 338 (409)
T 3h8l_A 294 MVSIKYDNVYAVGDANSMTVPKLGY-LAVMTGRIAAQHLANRLGVP 338 (409)
T ss_dssp SBBSSCTTEEECGGGBTTCCSCCHH-HHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCCEEEeehhccCCCCcHHH-HHHHHHHHHHHHHHHHhcCC
Confidence 555 8999999999985 344444 79999999999999999443
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=229.60 Aligned_cols=267 Identities=17% Similarity=0.158 Sum_probs=176.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCCCCCCceecccC------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVRSGVA------------------------------ 65 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~~~ggl~~~g~~------------------------------ 65 (483)
..++|+||||||||+++|..|++.+ . +|+|||+.+.+||.+.+.-.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 4589999999999999999999998 7 99999999888776654310
Q ss_pred --------------------------CCCCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecc---e----
Q 011535 66 --------------------------PDHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE---L---- 104 (483)
Q Consensus 66 --------------------------p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~---~---- 104 (483)
+.++....+..++.+.+...+..+++++.|.. .+++.+ +
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 01112345667777777766666666766531 344433 2
Q ss_pred eeccCEEEEccCCC-CCCCCCCCCCCC-----C-CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHH
Q 011535 105 RQLYHVVVLAYGAE-SDRALGIPGEDL-----I-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (483)
Q Consensus 105 ~~~yd~vvlAtG~~-~~~~~~ipg~~~-----~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~ 177 (483)
...||+||+|||+. .|+.+++||.+. + .++++.++.. + ..+ .+++|+|||+|++|+|+|..
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~-----~------~~~-~~k~VvVvG~G~sg~e~A~~ 230 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFRE-----P------ELF-VGESVLVVGGASSANDLVRH 230 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCC-----G------GGG-TTCCEEEECSSHHHHHHHHH
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCC-----h------hhc-CCCEEEEEccCcCHHHHHHH
Confidence 35699999999984 356667888541 2 2555554431 0 012 57899999999999999999
Q ss_pred HhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHH
Q 011535 178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257 (483)
Q Consensus 178 L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (483)
|++ .+.+.|+++.|++.+.
T Consensus 231 l~~--------------------~~~~~V~l~~r~~~~l----------------------------------------- 249 (447)
T 2gv8_A 231 LTP--------------------VAKHPIYQSLLGGGDI----------------------------------------- 249 (447)
T ss_dssp HTT--------------------TSCSSEEEECTTCCSC-----------------------------------------
T ss_pred HHH--------------------HhCCcEEEEeCCCCcC-----------------------------------------
Confidence 986 3433399999886420
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCe
Q 011535 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGM 337 (483)
Q Consensus 258 ~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~ 337 (483)
...+|.+ ...+.++. . +++ .|.+. +|+ .++++|.
T Consensus 250 ---------------------~~~~i~~--~~~v~~~~--~-~~~---~v~~~----------------dG~-~~~~~D~ 283 (447)
T 2gv8_A 250 ---------------------QNESLQQ--VPEITKFD--P-TTR---EIYLK----------------GGK-VLSNIDR 283 (447)
T ss_dssp ---------------------BCSSEEE--ECCEEEEE--T-TTT---EEEET----------------TTE-EECCCSE
T ss_pred ---------------------CCCCeEE--ecCeEEEe--c-CCC---EEEEC----------------CCC-EeccCCE
Confidence 0345553 45566665 2 122 33332 232 3489999
Q ss_pred EEEeeecCCCCCCCCCc-----cCCC--CcccCCCCeeeecCCCC-CCcccCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 338 VLKSIGYKSVPVNGLPF-----DNHK--GIVPNIRGRVLKNISGD-SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 338 vi~a~G~~~~~~~~l~~-----~~~~--g~~~~~~G~v~v~~~~~-~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
||+|||++|+. +| .+.. ++.. ++.+.++.+.. ..++.|+||++||+.... ....|..||+.+|.
T Consensus 284 vi~atG~~~~~----~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~--~~~~a~~qa~~~a~ 355 (447)
T 2gv8_A 284 VIYCTGYLYSV----PFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV--PFPTSQAQAAFLAR 355 (447)
T ss_dssp EEECCCBCCCC----CCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC--HHHHHHHHHHHHHH
T ss_pred EEECCCCCcCC----CCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc--CchHHHHHHHHHHH
Confidence 99999999975 34 4432 3333 34443333210 126889999999997543 34468899999998
Q ss_pred HHHH
Q 011535 410 SISE 413 (483)
Q Consensus 410 ~I~~ 413 (483)
+|..
T Consensus 356 ~~~g 359 (447)
T 2gv8_A 356 VWSG 359 (447)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8854
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=233.96 Aligned_cols=336 Identities=13% Similarity=0.081 Sum_probs=182.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCceecccC-------------------C----------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQE---AQVDIIDRLPTPFGLVRSGVA-------------------P---------- 66 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~---~~v~lie~~~~~ggl~~~g~~-------------------p---------- 66 (483)
.++|+||||||||+++|..|++.+++ .+|+|||+.+.++.. .+.. |
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~--~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l 107 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH--GNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL 107 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSS--GGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCc--CCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence 35899999999999999999999755 899999999875521 1100 1
Q ss_pred --------------CCCChHHHHHHHHHHHhcCCeEEEeCeEEce-------------EEEecce-----eeccCEEEEc
Q 011535 67 --------------DHPETKIVINQFSRVVQHERCSFFGNVTLGS-------------SVSLSEL-----RQLYHVVVLA 114 (483)
Q Consensus 67 --------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~-------------~~~~~~~-----~~~yd~vvlA 114 (483)
.++...++..++.+.+...++.++.++.+.. .+.+.++ ...||+||+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 0112345566677777777777777765421 2222222 3469999999
Q ss_pred cCCCCCCCCC-CCCCCCC-CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccch
Q 011535 115 YGAESDRALG-IPGEDLI-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIAS 192 (483)
Q Consensus 115 tG~~~~~~~~-ipg~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~ 192 (483)
||+ .+..|+ +++.... .++++.++...+.... .....+++|+|||+|++|+|+|..|.+
T Consensus 188 tG~-~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vvVvGgG~sg~e~a~~l~~------------ 248 (463)
T 3s5w_A 188 PGG-TPRIPQVFRALKGDGRVFHHSQYLEHMAKQP------CSSGKPMKIAIIGGGQSAAEAFIDLND------------ 248 (463)
T ss_dssp CCC-EECCCGGGGGGTTCTTEEEGGGHHHHHCC-------------CEEEEEECCSHHHHHHHHHHHH------------
T ss_pred CCC-CCCCcchhhhcCCCCcEEECHHHHhhHHHhh------hcccCCCeEEEECCCHhHHHHHHHHHh------------
Confidence 998 454443 2333222 4566655543222110 011147899999999999999999986
Q ss_pred HHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHH-H-----------hhccHHHHH
Q 011535 193 YAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE-E-----------MKNSRIQRR 260 (483)
Q Consensus 193 ~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~r 260 (483)
..+..+|+++.|++.+......+-..+++. |.. ...+..++.... . ....+....
T Consensus 249 -------~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~-p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (463)
T 3s5w_A 249 -------SYPSVQADMILRASALKPADDSPFVNEVFA-PKF-----TDLIYSREHAERERLLREYHNTNYSVVDTDLIER 315 (463)
T ss_dssp -------HCTTEEEEEECSSSSCCBCCCCHHHHGGGS-HHH-----HHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHH
T ss_pred -------cCCCCeEEEEEeCCCCcCccCCccchhccC-hhH-----HHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHH
Confidence 234679999999986432111110000000 000 000000000000 0 000111112
Q ss_pred HHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEE
Q 011535 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLK 340 (483)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~ 340 (483)
+.+.+..... ....+|++++++.+.++. . +++ ...+.+.+. .+|+..+++||+||+
T Consensus 316 ~~~~l~~~~~-------~~~~~v~i~~~~~v~~v~--~-~~~-~~~v~~~~~-------------~~g~~~~~~~D~Vv~ 371 (463)
T 3s5w_A 316 IYGVFYRQKV-------SGIPRHAFRCMTTVERAT--A-TAQ-GIELALRDA-------------GSGELSVETYDAVIL 371 (463)
T ss_dssp HHHHHHHHHH-------HCCCCSEEETTEEEEEEE--E-ETT-EEEEEEEET-------------TTCCEEEEEESEEEE
T ss_pred HHHHHHHHHh-------cCCCCeEEEeCCEEEEEE--e-cCC-EEEEEEEEc-------------CCCCeEEEECCEEEE
Confidence 2222221111 013689999999999987 3 233 223444321 145556899999999
Q ss_pred eeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCc----ccCceeeeccCCC--C--CcchhHhhHHHHHHHHHHHH
Q 011535 341 SIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ----VENGLYVCGWLKR--G--PTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 341 a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t----~~p~vya~Gd~~~--g--~~~~~~~a~~~g~~~a~~I~ 412 (483)
|||++|++.. +|........ |++.++.++ +.. ..|+||++|||.. | .......|.+++.+++..+.
T Consensus 372 AtG~~p~~~~--~~l~~l~~~~---g~i~v~~~~-~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 372 ATGYERQLHR--QLLEPLAEYL---GDHEIGRDY-RLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp CCCEECCC-C--TTTGGGGGGB---C--CCCTTS-BCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred eeCCCCCCcc--chhHHHHHHh---CCcccCccc-ccccCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 9999998422 2333222111 566666653 212 2577999999973 2 11222257777776655444
Q ss_pred HHHhcC
Q 011535 413 EDLEQG 418 (483)
Q Consensus 413 ~~l~~~ 418 (483)
+.....
T Consensus 446 ~~~~~~ 451 (463)
T 3s5w_A 446 HLKPGT 451 (463)
T ss_dssp HHC---
T ss_pred hcCCch
Confidence 443333
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-27 Score=243.21 Aligned_cols=296 Identities=13% Similarity=0.118 Sum_probs=180.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-C------ceecccCCC---------CC--------ChHH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-G------LVRSGVAPD---------HP--------ETKI 73 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-g------l~~~g~~p~---------~~--------~~~~ 73 (483)
..++|+|||||+||++||..|++.+++.+|+|||+.+.++ . .+..+..+. ++ ...+
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 4578999999999999999999885569999999987642 1 011110000 00 0000
Q ss_pred HHHHHHHH--HhcCCeEEEeCeEEc------eEEEeccee-eccCEEEEccCCCCCCCCCCCCCC----CCCeeecceee
Q 011535 74 VINQFSRV--VQHERCSFFGNVTLG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED----LIGVHSAREFV 140 (483)
Q Consensus 74 ~~~~~~~~--~~~~~v~~~~~~~v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~~----~~~v~~a~~~~ 140 (483)
.......+ +...+++++.++.+. +.+.+.++. ..||+||||||+ .++.+++++.. ..+++..+.+.
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs-~p~~~~~~~~~~~~~~~~v~~~~~~~ 168 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGG-TPRSLSAIDRAGAEVKSRTTLFRKIG 168 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCE-EECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCCcccccccccCceEEEcCHH
Confidence 00000011 124578998885442 245555543 479999999998 56655554431 12333222111
Q ss_pred eeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCC
Q 011535 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACT 220 (483)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~ 220 (483)
... .+...+..+++|+|||+|++|+|+|..|.+ ..++.+ .+|+++.+.+.......
T Consensus 169 d~~-------~l~~~~~~~~~vvViGgG~iG~E~A~~l~~----------------~~~~~g-~~V~~v~~~~~~~~~~l 224 (493)
T 1m6i_A 169 DFR-------SLEKISREVKSITIIGGGFLGSELACALGR----------------KARALG-TEVIQLFPEKGNMGKIL 224 (493)
T ss_dssp HHH-------HHHHHHHHCSEEEEECCSHHHHHHHHHHHH----------------HHHHHT-CEEEEECSSSSTTTTTS
T ss_pred HHH-------HHHHHhhcCCeEEEECCCHHHHHHHHHHHh----------------hhhhcC-CEEEEEecCcccccccC
Confidence 000 000001136899999999999999999874 011112 36888887653211100
Q ss_pred HHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCC
Q 011535 221 AKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300 (483)
Q Consensus 221 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~ 300 (483)
+ +.+...+.+.+. ++||+++++..+.++. . +
T Consensus 225 -------------------------~--------~~~~~~~~~~l~-------------~~GV~v~~~~~V~~i~--~-~ 255 (493)
T 1m6i_A 225 -------------------------P--------EYLSNWTMEKVR-------------REGVKVMPNAIVQSVG--V-S 255 (493)
T ss_dssp -------------------------C--------HHHHHHHHHHHH-------------TTTCEEECSCCEEEEE--E-E
T ss_pred -------------------------C--------HHHHHHHHHHHH-------------hcCCEEEeCCEEEEEE--e-c
Confidence 0 111122223332 7799999999999987 3 2
Q ss_pred CCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCC-CCeeeecCCCCCCcc
Q 011535 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI-RGRVLKNISGDSSQV 379 (483)
Q Consensus 301 ~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~-~G~v~v~~~~~~~t~ 379 (483)
++.+ .+++. +| ++++||+||+|+|++|++ .+.+..|+.+++ +|.+.+|++ +++
T Consensus 256 ~~~~-~v~l~----------------dG--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~~~~ggi~Vd~~--l~t- 309 (493)
T 1m6i_A 256 SGKL-LIKLK----------------DG--RKVETDHIVAAVGLEPNV----ELAKTGGLEIDSDFGGFRVNAE--LQA- 309 (493)
T ss_dssp TTEE-EEEET----------------TS--CEEEESEEEECCCEEECC----TTHHHHTCCBCTTTCSEECCTT--CEE-
T ss_pred CCeE-EEEEC----------------CC--CEEECCEEEECCCCCccH----HHHHHcCCccccCCCcEEECCC--ccc-
Confidence 3332 23321 22 389999999999999986 355566777775 588889987 556
Q ss_pred cCceeeeccCCCCCc------c--hhHhhHHHHHHHHHHHHH
Q 011535 380 ENGLYVCGWLKRGPT------G--IIATNLYCAEETVASISE 413 (483)
Q Consensus 380 ~p~vya~Gd~~~g~~------~--~~~~a~~~g~~~a~~I~~ 413 (483)
.|+|||+|||+..+. . ....|+.||+.+|.||+.
T Consensus 310 ~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g 351 (493)
T 1m6i_A 310 RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351 (493)
T ss_dssp ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcC
Confidence 699999999986321 1 223699999999999873
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=243.34 Aligned_cols=282 Identities=18% Similarity=0.160 Sum_probs=185.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec-ccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~-g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...++|+||||||||++||..|++.+ ++|+|||+.+.+||.+.+ ...|+.....+....+.+.++..+++++.++.+
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 448 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 448 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEe
Confidence 34689999999999999999999998 999999999988887653 344666666666677777788889999988765
Q ss_pred ceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHH
Q 011535 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (483)
Q Consensus 96 ~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A 175 (483)
.. .+. ..||+||||||+ .++.+++||.+..++++..++.. . ....+++|+|||+|++|+|+|
T Consensus 449 ~~----~~~-~~~d~lviAtG~-~p~~~~i~G~~~~~v~~~~~~l~---~---------~~~~~~~VvVIGgG~~g~E~A 510 (671)
T 1ps9_A 449 TA----DQL-QAFDETILASGI-VPRTPPIDGIDHPKVLSYLDVLR---D---------KAPVGNKVAIIGCGGIGFDTA 510 (671)
T ss_dssp CS----SSS-CCSSEEEECCCE-EECCCCCBTTTSTTEEEHHHHHT---S---------CCCCCSEEEEECCHHHHHHHH
T ss_pred cH----HHh-hcCCEEEEccCC-CcCCCCCCCCCCCcEeeHHHHhh---C---------CCCCCCeEEEECCChhHHHHH
Confidence 31 111 179999999999 67888899988777887655431 1 112578999999999999999
Q ss_pred HHHhcCCccccccccchHHHHHH------------------hcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 176 RILLRPTEELATTDIASYAWTAL------------------EGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 176 ~~L~~~~~~l~~~di~~~~~~~l------------------~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
..|.+...+- +-+........ ......+|+++.+........
T Consensus 511 ~~l~~~G~~v--tv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~------------------ 570 (671)
T 1ps9_A 511 MYLSQPGEST--SQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQG------------------ 570 (671)
T ss_dssp HHHTCCSSCG--GGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTT------------------
T ss_pred HHHHhcCCCc--ccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccc------------------
Confidence 9998632110 00000000000 001124566666543221000
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
++ +.....+.+.|. ++||+++++..+.++. . + ++.+..
T Consensus 571 -------l~--------~~~~~~~~~~l~-------------~~GV~v~~~~~v~~i~--~--~----~v~~~~------ 608 (671)
T 1ps9_A 571 -------LG--------KTTGWIHRTTLL-------------SRGVKMIPGVSYQKID--D--D----GLHVVI------ 608 (671)
T ss_dssp -------SC--------TTTHHHHHHHHH-------------HTTCEEECSCEEEEEE--T--T----EEEEEE------
T ss_pred -------cc--------cccHHHHHHHHH-------------hcCCEEEeCcEEEEEe--C--C----eEEEec------
Confidence 00 011111223332 6799999999988886 3 3 233321
Q ss_pred CCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchh
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~ 397 (483)
+|+.+++++|.||+|+|++|++ .|.+. + . ...++||++|||+.......
T Consensus 609 ---------~G~~~~i~~D~Vi~a~G~~p~~----~l~~~--l--~--------------~~g~~v~aiGD~~~~~~~~~ 657 (671)
T 1ps9_A 609 ---------NGETQVLAVDNVVICAGQEPNR----ALAQP--L--I--------------DSGKTVHLIGGCDVAMELDA 657 (671)
T ss_dssp ---------TTEEEEECCSEEEECCCEEECC----TTHHH--H--H--------------TTTCCEEECGGGTCCSSCCH
T ss_pred ---------CCeEEEEeCCEEEECCCccccH----HHHHH--H--H--------------hcCCCEEEECCcCccCchhH
Confidence 3444689999999999999976 12211 1 0 12268999999976432123
Q ss_pred HhhHHHHHHHHHHH
Q 011535 398 ATNLYCAEETVASI 411 (483)
Q Consensus 398 ~~a~~~g~~~a~~I 411 (483)
..|++||..+|.+|
T Consensus 658 ~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 658 RRAIAQGTRLALEI 671 (671)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 37999999999875
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-25 Score=228.77 Aligned_cols=251 Identities=16% Similarity=0.108 Sum_probs=179.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccC--CCCC-ChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA--PDHP-ETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~--p~~~-~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
.++|+||||||||+++|..|++. .+|+|||+.+.+||.+.+... .+++ ...++...+.+.+ ..+++++.+..+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v 183 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA 183 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence 35899999999999999999987 899999999988876543210 1111 3445555555545 568998888765
Q ss_pred ce--------EE-Eecce---eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEE
Q 011535 96 GS--------SV-SLSEL---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAV 163 (483)
Q Consensus 96 ~~--------~~-~~~~~---~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vv 163 (483)
.. .+ ..+.. ...||+||||||+ .++.+++||.+.+++++..++....+.. ....+++++
T Consensus 184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa-~~~~~~~~g~~~~gv~~~~~~~~~~~~~--------~~~~~~~vv 254 (493)
T 1y56_A 184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA-IDSTMLFENNDMPGVFRRDFALEVMNVW--------EVAPGRKVA 254 (493)
T ss_dssp CCCEECSSSEEEEEEETTEEEEEEESCEEECCCE-EECCCCCTTTTSTTEEEHHHHHHHHHTS--------CBCSCSEEE
T ss_pred EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCC-CccCCCCCCCCCCCEEEcHHHHHHHHhc--------ccCCCCEEE
Confidence 21 11 11222 3469999999998 5778889999999999876654333221 112568999
Q ss_pred EEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEecccccc
Q 011535 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (483)
Q Consensus 164 VIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~ 243 (483)
|||+|++|+| ..+.
T Consensus 255 ViGgG~~gle--~~l~---------------------------------------------------------------- 268 (493)
T 1y56_A 255 VTGSKADEVI--QELE---------------------------------------------------------------- 268 (493)
T ss_dssp EESTTHHHHH--HHHH----------------------------------------------------------------
T ss_pred EECCCHHHHH--HHHH----------------------------------------------------------------
Confidence 9999999998 1111
Q ss_pred CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCcee
Q 011535 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (483)
Q Consensus 244 ~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~ 323 (483)
+.||+++++..+.++. . ++.+..+.+.
T Consensus 269 ------------------------------------~~GV~v~~~~~v~~i~--~--~~~v~~v~~~------------- 295 (493)
T 1y56_A 269 ------------------------------------RWGIDYVHIPNVKRVE--G--NEKVERVIDM------------- 295 (493)
T ss_dssp ------------------------------------HHTCEEEECSSEEEEE--C--SSSCCEEEET-------------
T ss_pred ------------------------------------hCCcEEEeCCeeEEEe--c--CCceEEEEeC-------------
Confidence 4578888899999997 4 4445444321
Q ss_pred eccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCccc--CCCCeee-ecCCCCCCcccCceeeeccCCCCCcchhHhh
Q 011535 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP--NIRGRVL-KNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (483)
Q Consensus 324 ~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~--~~~G~v~-v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a 400 (483)
+| .+++||+||+|+|++|+. .+....|+.+ +++|++. +|++ ++ +.|+|||+|||+.. ..+. .|
T Consensus 296 ---~g--~~i~aD~Vv~a~G~~p~~----~l~~~~g~~~~~~~~g~i~~vd~~--~~-s~~~vya~GD~~~~-~~~~-~A 361 (493)
T 1y56_A 296 ---NN--HEYKVDALIFADGRRPDI----NPITQAGGKLRFRRGYYSPVLDEY--HR-IKDGIYVAGSAVSI-KPHY-AN 361 (493)
T ss_dssp ---TC--CEEECSEEEECCCEEECC----HHHHHTTCCEEEETTEEEECCCTT--SE-EETTEEECSTTTCC-CCHH-HH
T ss_pred ---CC--eEEEeCEEEECCCcCcCc----hHHHhcCCCccccCCceeeccccc--cC-cCCCEEEEeccCCc-cCHH-HH
Confidence 12 489999999999999976 3444555543 4678887 7876 45 89999999999754 3444 79
Q ss_pred HHHHHHHHHHHHHHH
Q 011535 401 LYCAEETVASISEDL 415 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l 415 (483)
+.+|+.+|.+|...+
T Consensus 362 ~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 362 YLEGKLVGAYILKEF 376 (493)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999887
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=220.98 Aligned_cols=162 Identities=18% Similarity=0.173 Sum_probs=117.4
Q ss_pred CCeEEEECccHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~-~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
.++|+|||||+||+++|..|+ +.+ .+|+|||+.+.+||.+.....|+ +..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G--~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 85 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELG--LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYIT 85 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCC
Confidence 469999999999999999999 877 89999999988887654322122 112
Q ss_pred hHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++.+.+++.++ ++++++.+.. .+++.++. ..||+||+|||. ..++.|++||.+ ..+ ++
T Consensus 86 ~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 165 (540)
T 3gwf_A 86 QPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETI 165 (540)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEE
Confidence 44677788888887776 6666655421 34444444 479999999995 357778899865 222 23
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+.. ..+. .+++|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 166 ~~~~~~~-----------~~~~-~~krV~VIG~G~sgve~a~~l~~---------------------~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 166 HTAAWPE-----------GKSL-AGRRVGVIGTGSTGQQVITSLAP---------------------EVEHLTVFVRTPQ 212 (540)
T ss_dssp EGGGCCS-----------SCCC-TTSEEEEECCSHHHHHHHHHHTT---------------------TCSEEEEEESSCC
T ss_pred EeecCCC-----------cccc-ccceEEEECCCchHHHHHHHHHh---------------------hCCEEEEEECCCC
Confidence 3332221 1122 67999999999999999999986 4578999999987
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 213 ~ 213 (540)
T 3gwf_A 213 Y 213 (540)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=205.82 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
..++|+|||||+||+++|..|++.+ ++|+|||+.+.+||.+.....|+ +..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g--~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~ 85 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAG--MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFAS 85 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCC
Confidence 4579999999999999999999988 99999999998888765333331 223
Q ss_pred hHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++.+.+++.++ ++.+++.+.. .+++.++. ..||+||+|||. ..++.|++||.+ ..+ ++
T Consensus 86 ~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 165 (545)
T 3uox_A 86 QPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESF 165 (545)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeE
Confidence 45777778887777665 5555654421 34444443 479999999994 257778899965 222 33
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+...+.+.++ ..+. .+++|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 166 h~~~~~~~~~~~~~----~~~~-~~krV~VIG~G~tgve~a~~la~---------------------~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 166 HSSRWPTDAEGAPK----GVDF-TGKRVGVIGTGATGVQIIPIAAE---------------------TAKELYVFQRTPN 219 (545)
T ss_dssp EGGGCCBCTTSCBS----CCCC-BTCEEEEECCSHHHHHHHHHHTT---------------------TBSEEEEEESSCC
T ss_pred Eccccccccccccc----cccc-CCCeEEEECCCccHHHHHHHHHh---------------------hCCEEEEEEcCCC
Confidence 33333221111110 0123 67999999999999999999986 4578999999986
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 220 ~ 220 (545)
T 3uox_A 220 W 220 (545)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=204.26 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=118.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.....|+ +..
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~ 97 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQG--LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYAT 97 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCB
T ss_pred CCCCEEEECchHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCC
Confidence 4579999999999999999999988 99999999988887654221121 223
Q ss_pred hHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++.+.+++.++ ++++++.+.. .+++.++. ..||+||+|||. ..+..|++||.+ ..+ ++
T Consensus 98 ~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 177 (549)
T 4ap3_A 98 QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIV 177 (549)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence 45777888888887776 6666655421 34444444 479999999994 257778899875 332 33
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+.. + ..++ .+++|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 178 ~~~~~~~------~----~~~~-~~krV~VIG~G~sgve~a~~l~~---------------------~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 178 HTARWPH------D----GVDF-TGKRVGVIGTGSSGIQSIPIIAE---------------------QAEQLFVFQRSAN 225 (549)
T ss_dssp EGGGCCT------T----CCCC-BTCEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEEESSCC
T ss_pred Eeccccc------c----cccc-CCCEEEEECCCchHHHHHHHHHh---------------------hCCEEEEEECCCC
Confidence 3332210 0 1123 67999999999999999999986 3478999999986
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 226 ~ 226 (549)
T 4ap3_A 226 Y 226 (549)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=199.00 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=113.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCC---------------------------CCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~---------------------------~~~ 70 (483)
...+|+|||||++|+++|..|++.+ ++|+|||+.+.+||.+.....|+ ++.
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~ 92 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS 92 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence 4579999999999999999999998 99999999988877653222221 122
Q ss_pred hHHHHHHHHHHHhcCC--eEEEeCeEEce----------EEEecce-eeccCEEEEccCCC-CCCCCCCCCCC-CCC-ee
Q 011535 71 TKIVINQFSRVVQHER--CSFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYGAE-SDRALGIPGED-LIG-VH 134 (483)
Q Consensus 71 ~~~~~~~~~~~~~~~~--v~~~~~~~v~~----------~~~~~~~-~~~yd~vvlAtG~~-~~~~~~ipg~~-~~~-v~ 134 (483)
..++..++...+++.+ .++.+++.+.. .++++++ ...||+||+|||.. .++.|.+||.+ .++ ++
T Consensus 93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~ 172 (542)
T 1w4x_A 93 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLY 172 (542)
T ss_dssp HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence 3456666776666554 34555654421 2344444 34699999999963 46677888865 343 23
Q ss_pred ecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 135 ~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+...+.. + ..++ .+++|+|||+|.+|+|+|..|++ ...+|+++.|++.
T Consensus 173 hs~~~~~------~----~~~~-~gk~V~VIG~G~sg~e~a~~l~~---------------------~~~~vtv~~r~~~ 220 (542)
T 1w4x_A 173 HTGNWPH------E----PVDF-SGQRVGVIGTGSSGIQVSPQIAK---------------------QAAELFVFQRTPH 220 (542)
T ss_dssp EGGGCCS------S----CCCC-BTCEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEEESSCC
T ss_pred ECCCCCC------c----hhcc-CCCEEEEECCCccHHHHHHHHhh---------------------cCceEEEEEcCCc
Confidence 3332210 0 0122 68999999999999999999985 3468999999875
Q ss_pred c
Q 011535 215 V 215 (483)
Q Consensus 215 ~ 215 (483)
+
T Consensus 221 ~ 221 (542)
T 1w4x_A 221 F 221 (542)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=182.28 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=113.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCC---Cceeccc-------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPF---GLVRSGV------------------- 64 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~g---gl~~~g~------------------- 64 (483)
.++|+|||+||+||++|..|.+.+ .......+|+.+..+ |++..+.
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~ 118 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS 118 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence 468999999999999999998753 135678899886532 2211110
Q ss_pred -------------------CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce----------------EEEecce-----
Q 011535 65 -------------------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS----------------SVSLSEL----- 104 (483)
Q Consensus 65 -------------------~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----------------~~~~~~~----- 104 (483)
-..++...++..|+++.+++.+..+.+++.|.. .++..++
T Consensus 119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~ 198 (501)
T 4b63_A 119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI 198 (501)
T ss_dssp TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence 012445668888999988887766677766532 2222221
Q ss_pred -eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCc
Q 011535 105 -RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTE 183 (483)
Q Consensus 105 -~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~ 183 (483)
...++.||+|||. .|..|+.++. ...++++.++.+...... ..++ .+|+|+|||+|+||+|++..|++
T Consensus 199 ~~~~ar~vVlatG~-~P~iP~~~~~-~g~v~Hss~y~~~~~~~~-----~~~~-~gKrV~VVG~G~SA~ei~~~L~~--- 267 (501)
T 4b63_A 199 SARRTRKVVIAIGG-TAKMPSGLPQ-DPRIIHSSKYCTTLPALL-----KDKS-KPYNIAVLGSGQSAAEIFHDLQK--- 267 (501)
T ss_dssp EEEEEEEEEECCCC-EECCCTTSCC-CTTEEEGGGHHHHHHHHS-----CCTT-SCCEEEEECCSHHHHHHHHHHHH---
T ss_pred EEEEeCEEEECcCC-CCCCCCCCCC-Ccceeeccccccchhhcc-----cccc-CCcEEEEECCcHHHHHHHHHHHh---
Confidence 1247899999997 4555554443 346888877764332110 0122 78999999999999999999975
Q ss_pred cccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 184 ELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 184 ~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..+..+|+++.|++.+
T Consensus 268 ----------------~~~~~~v~~~~R~~~~ 283 (501)
T 4b63_A 268 ----------------RYPNSRTTLIMRDSAM 283 (501)
T ss_dssp ----------------HSTTCEEEEECSSSSC
T ss_pred ----------------cCCCceEEEEeCCCcc
Confidence 2346789999999643
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=142.81 Aligned_cols=175 Identities=13% Similarity=0.069 Sum_probs=115.3
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||+|++|+++|..|.+ .+ .+|+++.+++.......
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~--------------------~g-~~v~lie~~~~~~~~~~-------------------- 41 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLAR--------------------AG-LKVLVLDGGRSKVKGVS-------------------- 41 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEECSCCTTTTCS--------------------
T ss_pred eEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEeCCCCcccCch--------------------
Confidence 69999999999999999986 44 47999998863221000
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+...+..+.......+. +.+.+... +.|++++++ .+.++. . +++.+ .++
T Consensus 42 ~~~~~~~~~~~~~~~~~~----~~l~~~~~---------~~gv~v~~~-~v~~i~--~-~~~~~-~v~------------ 91 (180)
T 2ywl_A 42 RVPNYPGLLDEPSGEELL----RRLEAHAR---------RYGAEVRPG-VVKGVR--D-MGGVF-EVE------------ 91 (180)
T ss_dssp CCCCSTTCTTCCCHHHHH----HHHHHHHH---------HTTCEEEEC-CCCEEE--E-CSSSE-EEE------------
T ss_pred hhhccCCCcCCCCHHHHH----HHHHHHHH---------HcCCEEEeC-EEEEEE--E-cCCEE-EEE------------
Confidence 000000000000011222 33333322 568999988 888887 3 22221 111
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhh
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a 400 (483)
+.++ ++++|.||+|+|.+|+. ....|+..+ +|++.+|++ ++|+.|+|||+|||+..+......|
T Consensus 92 ------~~~g-~i~ad~vI~A~G~~~~~------~~~~g~~~~-~g~i~vd~~--~~t~~~~i~a~GD~~~~~~~~~~~A 155 (180)
T 2ywl_A 92 ------TEEG-VEKAERLLLCTHKDPTL------PSLLGLTRR-GAYIDTDEG--GRTSYPRVYAAGVARGKVPGHAIIS 155 (180)
T ss_dssp ------CSSC-EEEEEEEEECCTTCCHH------HHHHTCCEE-TTEECCCTT--CBCSSTTEEECGGGGTCCSCCHHHH
T ss_pred ------ECCC-EEEECEEEECCCCCCCc------cccCCCCcc-CceEEeCCC--CCcCCCCEEEeecccCcchhhHHHH
Confidence 1222 79999999999999842 123356667 899999987 7889999999999988765333479
Q ss_pred HHHHHHHHHHHHHHHhcCcCCC
Q 011535 401 LYCAEETVASISEDLEQGVLAS 422 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l~~~~~~~ 422 (483)
+.+|+.+|.+|...+.+.++..
T Consensus 156 ~~~g~~aa~~i~~~~~~~~~~~ 177 (180)
T 2ywl_A 156 AGDGAYVAVHLVSDLRGEPYKD 177 (180)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHhHHHHHHHHHHHhhhccccc
Confidence 9999999999999998765444
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-20 Score=183.01 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=86.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc-CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-APDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~-~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|+|||||||||+||++|+++..+++|+|||+.+.+||.+.++- .+.... +......++++.+++|..+...
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~---l~~~~~~~~~e~Gv~~~~~~~~- 139 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMV---MRKPAHLFLQELEIPYEDEGDY- 139 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEE---EETTTHHHHHHTTCCCEECSSE-
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHH---HHHHHHHHHHHcCCEEEECCcc-
Confidence 45799999999999999999986422399999999999999877641 111111 1112233445567766544211
Q ss_pred eEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHH
Q 011535 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~ 176 (483)
....+.++++++. .++.+.++|.+.........+... . .....+++++|||+|+++++.|.
T Consensus 140 --------~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~---~-------~~~~~~~~v~viggg~~av~~a~ 200 (326)
T 3fpz_A 140 --------VVVKHAALFISTV-LSKVLQLPNVKLFNATCVEDLVTR---P-------PTEKGEVTVAGVVTNWTLVTQAH 200 (326)
T ss_dssp --------EEESCHHHHHHHH-HHHHHTSTTEEEETTEEEEEEEEE---S-------SCSSSSCEEEEEEEEEHHHHTCT
T ss_pred --------eecceeEEEEcch-hhhccccccceeecccccceeecc---C-------CcccCCCEEEEEccCceeeehhh
Confidence 1123334445554 455667777653333333333211 1 01226789999999999999998
Q ss_pred HHhc
Q 011535 177 ILLR 180 (483)
Q Consensus 177 ~L~~ 180 (483)
.+..
T Consensus 201 ~~~~ 204 (326)
T 3fpz_A 201 GTQC 204 (326)
T ss_dssp TSSS
T ss_pred hhhh
Confidence 7764
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=133.05 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+|+|||||+||+++|..|++.+ .+|+|||+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G--~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAG--KKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC
Confidence 6899999999999999999998 999999998
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=112.13 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=31.5
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHH
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l 415 (483)
|++|+||++|||+ + .++.+.++.||+.+|.+|.++|
T Consensus 196 t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 196 KRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccceeeeecc-c-CccHHHHHHHHHHHHHHHHhhc
Confidence 6899999999999 4 5577688999999999999876
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=90.82 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=69.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc----ee-cccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL----VR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl----~~-~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
++|+|||||++|+++|..|++.+ .+|+|||+.+..... .. ++. |......++...+.+.+++.+++++.+ .
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~gv~v~~~-~ 77 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGRSKVKGVSRVPNYPGL-LDEPSGEELLRRLEAHARRYGAEVRPG-V 77 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSCCTTTTCSCCCCSTTC-TTCCCHHHHHHHHHHHHHHTTCEEEEC-C
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCcccCchhhhccCCC-cCCCCHHHHHHHHHHHHHHcCCEEEeC-E
Confidence 58999999999999999999998 999999998732110 00 111 222335678888888888889999888 4
Q ss_pred Ece--------EEEecceeeccCEEEEccCCC
Q 011535 95 LGS--------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~--------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
+.. .+.++++...+|.||+|+|..
T Consensus 78 v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 78 VKGVRDMGGVFEVETEEGVEKAERLLLCTHKD 109 (180)
T ss_dssp CCEEEECSSSEEEECSSCEEEEEEEEECCTTC
T ss_pred EEEEEEcCCEEEEEECCCEEEECEEEECCCCC
Confidence 421 244444555799999999984
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-09 Score=104.00 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-----------ecccC--------CCC-------
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-----------RSGVA--------PDH------- 68 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-----------~~g~~--------p~~------- 68 (483)
+....++|+|||||+||+++|..|++.+ .+|+|||+.+.+++.+ ..... +.+
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~ 100 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALAR 100 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHh
Confidence 3445679999999999999999999999 9999999998765321 00000 000
Q ss_pred ----------------------------CChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecceeeccCEEE
Q 011535 69 ----------------------------PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSELRQLYHVVV 112 (483)
Q Consensus 69 ----------------------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~~~~yd~vv 112 (483)
....++...+.+.+++.|++++.++.+.. .+.+.++...+|+||
T Consensus 101 ~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VI 180 (417)
T 3v76_A 101 YRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLV 180 (417)
T ss_dssp SCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEE
T ss_pred cCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEE
Confidence 01235556667777777899998866532 234444555799999
Q ss_pred EccCCCC
Q 011535 113 LAYGAES 119 (483)
Q Consensus 113 lAtG~~~ 119 (483)
+|||...
T Consensus 181 lAtG~~S 187 (417)
T 3v76_A 181 VASGGKS 187 (417)
T ss_dssp ECCCCSS
T ss_pred ECCCCcc
Confidence 9999853
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.9e-08 Score=91.19 Aligned_cols=39 Identities=38% Similarity=0.507 Sum_probs=35.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~gg 58 (483)
..++|+|||||++|+++|..|++. + .+|+|||+.+.+++
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G--~~V~viEk~~~~gg 77 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGG 77 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC--CeEEEEECCCCCCC
Confidence 357999999999999999999997 7 99999999987754
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-08 Score=92.13 Aligned_cols=125 Identities=10% Similarity=0.103 Sum_probs=72.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC-CCCceeeccCCceEEEecCeEEEeeecCCCCCCCC-CccCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG-GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGL-PFDNH 357 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~-~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l-~~~~~ 357 (483)
..|+++++++.+.++. . +++++.++.+....+.-+ .++. .++..++++|.||.|+|..+...... .+...
T Consensus 132 ~~gv~i~~~~~V~~i~--~-~~~~v~gv~~~~~~~~~~~~~g~-----~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~ 203 (284)
T 1rp0_A 132 RPNVKLFNAVAAEDLI--V-KGNRVGGVVTNWALVAQNHHTQS-----CMDPNVMEAKIVVSSCGHDGPFGATGVKRLKS 203 (284)
T ss_dssp STTEEEEETEEEEEEE--E-ETTEEEEEEEEEHHHHTCTTTSS-----CCCCEEEEEEEEEECCCSSSTTTTHHHHHHHH
T ss_pred cCCCEEEcCcEEEEEE--e-cCCeEEEEEEeccccccccCccc-----cCceEEEECCEEEECCCCchHHHHHHHHHhhh
Confidence 4689999999999997 3 356666665532100000 0000 13346899999999999876421100 00000
Q ss_pred ----CCcccCCCCe-------eeecCCCCCCcccCceeeeccCCC--------CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 358 ----KGIVPNIRGR-------VLKNISGDSSQVENGLYVCGWLKR--------GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 358 ----~g~~~~~~G~-------v~v~~~~~~~t~~p~vya~Gd~~~--------g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++.. ..|. +.++. ..+..|++|++|+++. +| ..+.++.+|..+|.+|.+.|...
T Consensus 204 ~g~~~~v~~-~~g~~~~~~~~~~v~~---~~~~~p~i~a~G~~~~~~~g~~~~gp--~~~~~~~sG~~~a~~i~~~l~~~ 277 (284)
T 1rp0_A 204 IGMIDHVPG-MKALDMNTAEDAIVRL---TREVVPGMIVTGMEVAEIDGAPRMGP--TFGAMMISGQKAGQLALKALGLP 277 (284)
T ss_dssp TTSSSCCCC-CEEECHHHHHHHHHHH---CEEEETTEEECTHHHHHHHTCEECCS--CCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCcCC-cCCchhhhhhHHHhhc---cccccCCEEEEeeehhhhcCCCCcCh--HHHHHHHhHHHHHHHHHHHhhhh
Confidence 01111 1121 11112 3357799999999862 23 23458899999999999998653
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-07 Score=84.95 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=64.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCC-----------------CChHHHHHHHHHH
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----------------PETKIVINQFSRV 81 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~-----------------~~~~~~~~~~~~~ 81 (483)
.++|+|||||++|+++|..|++.+ .+|+|||+.+...| +. +.|.. +....+...+.+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g--~~v~lie~~~~~~G-~~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~ 77 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVM-MP--FLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYL 77 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTT-CC--SSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCcCC-cc--cCccccccchhhHHhhhccCCCCCHHHHHHHHHHH
Confidence 479999999999999999999999 99999999843333 11 11110 0223555667777
Q ss_pred HhcC-CeEEEeCeEEce--------EEEecce-eeccCEEEEccCCC
Q 011535 82 VQHE-RCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 82 ~~~~-~v~~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
++.. +++++....... .+.+.++ ...+|+||+|+|..
T Consensus 78 ~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 78 LEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 7775 898875432211 1333333 34699999999984
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=97.35 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC----------------CC-------CChH
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP----------------DH-------PETK 72 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p----------------~~-------~~~~ 72 (483)
....++|+||||||+|+++|..|++.| ++|+|||+.+.+++....+..| .+ ....
T Consensus 89 ~~~~~dVvIVGgG~aGl~aA~~La~~G--~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 166 (497)
T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLG--ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR 166 (497)
T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred ccCCCCEEEECccHHHHHHHHHHHHCC--CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence 345789999999999999999999999 9999999998765432111111 00 1124
Q ss_pred HHHHHHHHHHhcCCeEEEeCeEEce-----------EEEe--c-ce---eeccCEEEEccCCC
Q 011535 73 IVINQFSRVVQHERCSFFGNVTLGS-----------SVSL--S-EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~v~~-----------~~~~--~-~~---~~~yd~vvlAtG~~ 118 (483)
++...+.+.+...+++++.++.+.. .+++ . ++ ...+|+||+|+|..
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~ 229 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK 229 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence 5666777777778999998876531 2233 1 22 24689999999984
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=94.46 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=68.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce-----------ecccCC--------CC-----------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-----------RSGVAP--------DH----------- 68 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~-----------~~g~~p--------~~----------- 68 (483)
.++|+|||||+||+++|..|++.+ .+|+|||+.+.+++.+ ..+..| .+
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence 368999999999999999999999 9999999998764311 111100 00
Q ss_pred ----------------------C--ChHHHHHHHHHHHhcCCeEEEeCeEEce------------EEEecceeeccCEEE
Q 011535 69 ----------------------P--ETKIVINQFSRVVQHERCSFFGNVTLGS------------SVSLSELRQLYHVVV 112 (483)
Q Consensus 69 ----------------------~--~~~~~~~~~~~~~~~~~v~~~~~~~v~~------------~~~~~~~~~~yd~vv 112 (483)
+ ...++...+.+.+++.|++++.++.+.. .+...+....+|+||
T Consensus 82 ~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VV 161 (401)
T 2gqf_A 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI 161 (401)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEE
T ss_pred HHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEE
Confidence 0 2345566677777778899988865521 122333345689999
Q ss_pred EccCCCC
Q 011535 113 LAYGAES 119 (483)
Q Consensus 113 lAtG~~~ 119 (483)
+|||...
T Consensus 162 lAtG~~s 168 (401)
T 2gqf_A 162 VATGGLS 168 (401)
T ss_dssp ECCCCSS
T ss_pred ECCCCcc
Confidence 9999843
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=91.78 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=68.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc----e----------eccc-------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL----V----------RSGV------------------- 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl----~----------~~g~------------------- 64 (483)
..++|+|||||++|+++|..|++.+ ++|+|||+.+.+++. . ..|+
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G--~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 87 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNG--WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMH 87 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEET
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeC
Confidence 4579999999999999999999999 999999998765421 0 0000
Q ss_pred ------CC--CC----CChHHHHHHHHHHHhcCCeEEEeCeEEce-----EEEeccee-eccCEEEEccCCC
Q 011535 65 ------AP--DH----PETKIVINQFSRVVQHERCSFFGNVTLGS-----SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 65 ------~p--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~-----~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+ +. .....+...+.+.+...|++++.++.+.. .+++.++. ..+|.||.|+|..
T Consensus 88 g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~ 159 (379)
T 3alj_A 88 NKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVG 159 (379)
T ss_dssp TEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTT
T ss_pred CceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCcc
Confidence 00 00 11245566677777777899998876532 34444443 4699999999984
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.9e-08 Score=90.37 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=37.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..+|+|||||||||+||..|+++| ++|+|||+.+.+||.++
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCccc
Confidence 368999999999999999999999 99999999999988653
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=92.94 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee---------------------c--------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR---------------------S-------------- 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~---------------------~-------------- 62 (483)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+++-.. +
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 102 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence 3479999999999999999999998 99999999876543100 0
Q ss_pred ------------cc----------CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce---------EEEeccee-eccCE
Q 011535 63 ------------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSLSELR-QLYHV 110 (483)
Q Consensus 63 ------------g~----------~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~---------~~~~~~~~-~~yd~ 110 (483)
|+ .|.......+...+.+.+++.|++++.++.+.. .+.+.++. ..+|.
T Consensus 103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~ 182 (447)
T 2i0z_A 103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 182 (447)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence 00 000001234555666667778999988866521 13334443 46899
Q ss_pred EEEccCCCC
Q 011535 111 VVLAYGAES 119 (483)
Q Consensus 111 vvlAtG~~~ 119 (483)
||+|||...
T Consensus 183 VVlAtGg~s 191 (447)
T 2i0z_A 183 VVIAVGGKS 191 (447)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCCc
Confidence 999999854
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=92.26 Aligned_cols=40 Identities=38% Similarity=0.508 Sum_probs=36.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||||+||+++|..|++.| .+|+|||+.+.++|
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G--~~V~vlEk~~~~gg 163 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGG 163 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 34579999999999999999999999 99999999987654
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-07 Score=89.37 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=66.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC----CCceec---------c----------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP----FGLVRS---------G---------------------- 63 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~----ggl~~~---------g---------------------- 63 (483)
.++|+|||||+||+++|..|++.| ++|+|||+.+.+ |..+.. |
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGK 82 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred cCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCC
Confidence 479999999999999999999999 999999998632 111100 0
Q ss_pred ------cC------C---CCCChHHHHHHHHHHHhcCCeEEEeCeEEce----------EEEeccee---eccCEEEEcc
Q 011535 64 ------VA------P---DHPETKIVINQFSRVVQHERCSFFGNVTLGS----------SVSLSELR---QLYHVVVLAY 115 (483)
Q Consensus 64 ------~~------p---~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----------~~~~~~~~---~~yd~vvlAt 115 (483)
.. + .+.....+...+.+.+...|++++.++.+.. .+...++. ..+|.||.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~ 162 (421)
T 3nix_A 83 EIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDAS 162 (421)
T ss_dssp EEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECC
T ss_pred eeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 00 0 0012345566677777777999998876531 12223443 4689999999
Q ss_pred CCC
Q 011535 116 GAE 118 (483)
Q Consensus 116 G~~ 118 (483)
|..
T Consensus 163 G~~ 165 (421)
T 3nix_A 163 GYG 165 (421)
T ss_dssp GGG
T ss_pred CCc
Confidence 974
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-06 Score=92.61 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=34.7
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
..+||+|+||.+ +|..|-- .|..||..++.|++..+.+.+
T Consensus 382 k~~~gLf~AGqi-nGttGYe-EAaaqGl~AG~nAa~~~~~~~ 421 (651)
T 3ces_A 382 KFIQGLFFAGQI-NGTTGYE-EAAAQGLLAGLNAARLSADKE 421 (651)
T ss_dssp SSSBTEEECSGG-GTCCCHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEEe-cCCcChH-HHHHHHHHHHHHHHHHhcCCC
Confidence 458999999998 6788877 899999999999999987753
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.6e-06 Score=81.77 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.++|+|||||+||+++|..|+++.++++|+|||+.+.++|
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG 118 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence 5799999999999999999999822399999999987653
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=91.63 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=39.0
Q ss_pred eeecCCCCCCc-ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 368 VLKNISGDSSQ-VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 368 v~v~~~~~~~t-~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
|..|+. +++ +++|+|++||.+....|++ .|..+|..+|+.|+.++.+.
T Consensus 497 i~~~~~--~~~~~~~gly~~GegaG~a~gi~-~Aa~~G~~~a~~i~~~~~~~ 545 (549)
T 3nlc_A 497 IKRGKD--FQSVNLKGFYPAGEGAGYAGGIL-SAGIDGIKVAEAVARDIVAA 545 (549)
T ss_dssp CCCTTT--TSCTTCBTEEECHHHHTSCCSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCC--ceECCcCCEEEccccCChhhHHH-HHHHHHHHHHHHHHHHhhhc
Confidence 444554 445 8999999999987777777 79999999999999998653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-06 Score=88.28 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+||||||+|+++|..|+++| ++|+|||+.+.+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G--~~v~viEr~~~~ 40 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQG--VRVLVVERRPGL 40 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSSSC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence 4579999999999999999999999 999999998643
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=85.58 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC----C---------------ce----------------e-c
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF----G---------------LV----------------R-S 62 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g----g---------------l~----------------~-~ 62 (483)
.++|+|||||++|+++|..|++.+ ++|+|||+.+.+. + +. . .
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G--~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQG--HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 469999999999999999999999 9999999986541 0 00 0 0
Q ss_pred c--c--CCC----------CCChHHHHHHHHHHHhcC-CeEEEeCeEEce----------EEEecce-eeccCEEEEccC
Q 011535 63 G--V--APD----------HPETKIVINQFSRVVQHE-RCSFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYG 116 (483)
Q Consensus 63 g--~--~p~----------~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~----------~~~~~~~-~~~yd~vvlAtG 116 (483)
| . .+. ......+...+.+.+.+. +++++.++.+.. .+++.++ ...+|.||.|+|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 0 0 000 012345666777777776 899988865521 3444444 346899999999
Q ss_pred CCC
Q 011535 117 AES 119 (483)
Q Consensus 117 ~~~ 119 (483)
...
T Consensus 164 ~~s 166 (399)
T 2x3n_A 164 IAS 166 (399)
T ss_dssp TTC
T ss_pred CCh
Confidence 843
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=86.49 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||||++|+++|..|++.+ .+|+|||+.+..
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~~~ 52 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMG 52 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence 4579999999999999999999999 999999997543
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-06 Score=89.02 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC-------------------Cce------------e-cc-c
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF-------------------GLV------------R-SG-V 64 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g-------------------gl~------------~-~g-~ 64 (483)
..++|+||||||+|+++|..|++.| ++|+|||+.+.+. |++ . ++ .
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 3469999999999999999999999 9999999986532 110 0 00 0
Q ss_pred ---------C----CC--CCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEe--cce--eeccCEEEEccCC
Q 011535 65 ---------A----PD--HPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSL--SEL--RQLYHVVVLAYGA 117 (483)
Q Consensus 65 ---------~----p~--~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~--~~~--~~~yd~vvlAtG~ 117 (483)
. |. ......+...+.+.+...|++++.++.+.. .+++ .++ ...+|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 0 00 012234556677777767899888876631 2344 344 3579999999998
Q ss_pred CC
Q 011535 118 ES 119 (483)
Q Consensus 118 ~~ 119 (483)
.+
T Consensus 206 ~S 207 (570)
T 3fmw_A 206 RS 207 (570)
T ss_dssp SC
T ss_pred Cc
Confidence 43
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=83.93 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.8
Q ss_pred CeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCCCCc
Q 011535 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~ggl 59 (483)
++|+|||||++|+++|..|++ .+ ++|+|||+.+.+||.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~~~gg~ 42 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKADDSGGR 42 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSSSSCGG
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCCCCccc
Confidence 589999999999999999999 77 999999999877764
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.5e-06 Score=84.62 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=33.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+.++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~~~ 58 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVKEI 58 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence 34689999999999999999999999 999999998754
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-06 Score=89.05 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||||+||+++|..|++.| ++|+|||+.+.
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G--~~V~LiEr~~~ 57 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLG--HDVTIYERSAF 57 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCC--CCEEEEcCCCC
Confidence 3579999999999999999999999 99999999854
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-06 Score=81.55 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||||++|+++|+.|++++ .+|+|||+...
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~~ 39 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRFI 39 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSST
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 3579999999999999999999998 99999999853
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.7e-06 Score=87.17 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G--~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRG--HRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEccCC
Confidence 479999999999999999999998 9999999986
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-06 Score=84.25 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQP 40 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCC
Confidence 4679999999999999999999999 999999998653
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=88.12 Aligned_cols=40 Identities=40% Similarity=0.539 Sum_probs=35.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
....+|+|||||+||+++|..|++.| .+|+|||+.+.++|
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G--~~V~vlEk~~~~gg 158 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGG 158 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 34579999999999999999999999 99999999987654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.9e-06 Score=82.56 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+|||||++|+++|..|++++ ++|+|||+.+.
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~~ 38 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEG 38 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 469999999999999999999999 99999999863
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.7e-06 Score=82.39 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||++|+++|+.|++++ .+|+|||+.+..
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~~~ 37 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHMPP 37 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 368999999999999999999999 999999998644
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=77.92 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=34.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.+|+||||||+|+++|..|++.+|+.+|+|+|+.+.+||
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg 104 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc
Confidence 489999999999999999999833399999999988764
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=83.00 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce--------------eccc----------------
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------------RSGV---------------- 64 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~--------------~~g~---------------- 64 (483)
.....++|+||||||+|+++|..|++.| ++|+|||+.+.+.... ..|+
T Consensus 8 ~~~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 85 (499)
T 2qa2_A 8 HHRSDASVIVVGAGPAGLMLAGELRLGG--VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFG 85 (499)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEET
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceec
Confidence 3346689999999999999999999999 9999999986542100 0000
Q ss_pred --------CC-CCC-----ChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce----eeccCEEEEccCCC
Q 011535 65 --------AP-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGAE 118 (483)
Q Consensus 65 --------~p-~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~----~~~yd~vvlAtG~~ 118 (483)
.+ .++ ....+...+.+.+...+++++.++.+.. .+++.+. ...+|+||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 165 (499)
T 2qa2_A 86 GRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR 165 (499)
T ss_dssp TEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred ceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence 00 011 1234556667777777899988876632 2333333 34689999999985
Q ss_pred C
Q 011535 119 S 119 (483)
Q Consensus 119 ~ 119 (483)
+
T Consensus 166 S 166 (499)
T 2qa2_A 166 S 166 (499)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.17 E-value=8.6e-06 Score=81.26 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=32.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 68999999999999999999999 99999999863
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.7e-06 Score=83.72 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-----e---------ecccC-----------------
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-----V---------RSGVA----------------- 65 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-----~---------~~g~~----------------- 65 (483)
...++|+||||||+|+++|..|++.| ++|+|||+.+.+... + ..|+.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAG--VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL 86 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence 45689999999999999999999999 999999998654210 0 00100
Q ss_pred -------C-CCC-----ChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEecce----eeccCEEEEccCCCC
Q 011535 66 -------P-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGAES 119 (483)
Q Consensus 66 -------p-~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~----~~~yd~vvlAtG~~~ 119 (483)
+ .++ ....+...+.+.+...+++++.++.+.. .+++.+. ...+|+||.|.|..+
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 87 PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0 000 1134555666777777899988876632 2333332 346899999999854
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.8e-06 Score=84.12 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|+|||||++|+++|+.|+ ++ .+|+|+|+.+.++
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G--~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AH--GRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TT--SCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CC--CCEEEEECCCCcc
Confidence 4689999999999999999999 57 9999999986543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.8e-06 Score=86.99 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||++|+++|..|+++| .+|+|||+.+.+
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~ 307 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRG--WQVTLYCADEAP 307 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCcc
Confidence 3489999999999999999999999 999999997543
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-06 Score=84.67 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=65.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC---CCcee-----------cccC-C------------------
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVR-----------SGVA-P------------------ 66 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~---ggl~~-----------~g~~-p------------------ 66 (483)
++|+||||||||+++|..|++..|+++|+|||+.+.+ |.... .++. .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 4899999999999999999999233999999998765 21100 0000 0
Q ss_pred --------CC----CChHHHHHHHHHHHhcCCeEEEeCeEEceEEEecce-eeccCEEEEccCCCCC
Q 011535 67 --------DH----PETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSEL-RQLYHVVVLAYGAESD 120 (483)
Q Consensus 67 --------~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~yd~vvlAtG~~~~ 120 (483)
++ ....++...+.+.+...|++++.++.+.. +... ...+|.||.|+|..+.
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~---i~~~~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLE---HGELPLADYDLVVLANGVNHK 144 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCS---GGGCCGGGCSEEEECCGGGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEecc---chhcccccCCEEEECCCCCch
Confidence 11 12245666777777777899998876632 1111 2469999999998433
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=81.52 Aligned_cols=92 Identities=25% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|++|+.+|..|++.+ .+|+++|+.+.+.. . ....++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 216 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPLG--------V-YLDKEFTDVLTEEMEANNITIATGETVER 216 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTTT--------T-TCCHHHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCccccc--------c-cCCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 4689999999999999999999999 99999999876422 1 11245667778888888999998865421
Q ss_pred --------EEEecceeeccCEEEEccCCCCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAESDR 121 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~~~~ 121 (483)
.+..+.....+|.||+|+|. .|+
T Consensus 217 i~~~~~v~~v~~~~~~i~~d~vi~a~G~-~p~ 247 (447)
T 1nhp_A 217 YEGDGRVQKVVTDKNAYDADLVVVAVGV-RPN 247 (447)
T ss_dssp EECSSBCCEEEESSCEEECSEEEECSCE-EES
T ss_pred EEccCcEEEEEECCCEEECCEEEECcCC-CCC
Confidence 12333333469999999997 344
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-06 Score=89.92 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|+|||||++||+||..|++.| .+|+|+|+++.+||...
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------C
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEE
Confidence 479999999999999999999999 99999999999998654
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=9.5e-06 Score=84.96 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=34.9
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
..+||+|++|.+ +|..|-. .|..||..++.|.+..+.+.+
T Consensus 387 k~~~gLf~AGqi-nGt~Gye-EAaaqGl~AG~nAa~~~~~~~ 426 (637)
T 2zxi_A 387 KKIRGLFHAGNF-NGTTGYE-EAAGQGIVAGINAALRAFGKE 426 (637)
T ss_dssp SSSBTEEECGGG-GTBCSHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCEEEeeec-CCcchHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 348999999999 6788888 799999999999999988753
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-06 Score=86.67 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
+++|+||||||||+++|..|+++| ++|+|||+.+.++
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~~ 40 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIG 40 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCC
Confidence 479999999999999999999999 9999999987643
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=83.71 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhc------CCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKA------HQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~------~~~~~v~lie~~~~~g 57 (483)
..+|+||||||||+++|..|++. + ++|+|||+.+.++
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G--~~V~vlEk~~~~g 77 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIG 77 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCC--CcEEEEeCCCCCC
Confidence 36899999999999999999998 6 9999999987654
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.7e-06 Score=82.56 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||++|+++|+.|+++.|+.+|+|||+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 4789999999999999999999922299999999754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.5e-05 Score=85.60 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||++|+++|+.|+++| .+|+|||+.+.+
T Consensus 263 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~ 299 (689)
T 3pvc_A 263 RCDDIAIIGGGIVSALTALALQRRG--AVVTLYCADAQP 299 (689)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSST
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CcEEEEeCCCcc
Confidence 3579999999999999999999999 999999997544
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=78.96 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=68.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. | ...++...+.+.+++.|++++.++.+..
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (367)
T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA 209 (367)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCeec--------c---CCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 379999999999999999999999 9999999987643 2 1235666777888888999999876532
Q ss_pred ---EEEecceeeccCEEEEccCC
Q 011535 98 ---SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+.++++...+|.||+|+|.
T Consensus 210 ~~~~v~~~~g~i~~D~vi~a~G~ 232 (367)
T 1xhc_A 210 NEEGVLTNSGFIEGKVKICAIGI 232 (367)
T ss_dssp CSSEEEETTEEEECSCEEEECCE
T ss_pred EeeEEEECCCEEEcCEEEECcCC
Confidence 34555554679999999997
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=8.2e-06 Score=83.19 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC------C-ce------eccc------------------CCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF------G-LV------RSGV------------------APD 67 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g------g-l~------~~g~------------------~p~ 67 (483)
..+|+||||||||+++|..|++.| ++|+|||+.+.+. | .+ ..++ .|.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G--~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRG--LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSS--CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 469999999999999999999999 9999999986531 1 00 0000 011
Q ss_pred C------------CChHHHHHHHHHHHhcCCeEEEeCeEEce------E---EEec---ce---eeccCEEEEccCCC
Q 011535 68 H------------PETKIVINQFSRVVQHERCSFFGNVTLGS------S---VSLS---EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 68 ~------------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~------~---~~~~---~~---~~~yd~vvlAtG~~ 118 (483)
. .....+...+.+.+...|++++.++.+.. . +.+. ++ ...+|.||.|+|..
T Consensus 84 ~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~ 161 (453)
T 3atr_A 84 MQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS 161 (453)
T ss_dssp SSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred CceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence 0 11234556666777778899998876531 1 2232 22 34699999999974
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-06 Score=88.32 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=38.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~ 61 (483)
...+|+|||||++||+||..|++. | .+|+|+|+++.+||..+
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G--~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDG--PSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCC--SCEEEEESSSSCCGGGC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCC--CCEEEEECCCCCcCCee
Confidence 357999999999999999999985 7 99999999999999764
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-05 Score=83.03 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=35.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..++|+|||+|+||+++|..|++.+ .+|+|||+.+.++|
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g--~~v~~~e~~~~~~~ 163 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGG 163 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSS--CCEEEECSSSSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 3579999999999999999999999 99999999987664
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=82.94 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||+||++||..|++.| .+|+|||+.+
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~ 54 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGG--LHCLLITSDL 54 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCG
T ss_pred CcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEecc
Confidence 4589999999999999999999999 9999999974
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=81.86 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=72.7
Q ss_pred hhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeE
Q 011535 9 SRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (483)
Q Consensus 9 ~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~ 88 (483)
++.......-+++++|||||+.|+..|..+.+.| .+|+|+++...+ |.+ ..++...+.+.++..+++
T Consensus 213 s~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG--~~VTii~~~~~L---------~~~--D~ei~~~l~~~l~~~gi~ 279 (542)
T 4b1b_A 213 SDDIFSLKKDPGKTLVVGASYVALECSGFLNSLG--YDVTVAVRSIVL---------RGF--DQQCAVKVKLYMEEQGVM 279 (542)
T ss_dssp HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEESSCSS---------TTS--CHHHHHHHHHHHHHTTCE
T ss_pred chhhhccccCCceEEEECCCHHHHHHHHHHHhcC--CeEEEecccccc---------ccc--chhHHHHHHHHHHhhcce
Confidence 3333344556789999999999999999999999 999999875321 332 346777788888889999
Q ss_pred EEeCeEEce--------EEEecce-eeccCEEEEccCCCCCCC
Q 011535 89 FFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 89 ~~~~~~v~~--------~~~~~~~-~~~yd~vvlAtG~~~~~~ 122 (483)
++.+..+.. .+.+.+. ...+|.|++|+|. .|+.
T Consensus 280 ~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR-~Pnt 321 (542)
T 4b1b_A 280 FKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR-KGDI 321 (542)
T ss_dssp EEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred eecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc-cCCc
Confidence 999876532 1233332 2358999999997 4443
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=80.13 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=68.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PT--YDSELTAPVAESLKKLGIALHLGHSVEG 237 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987642 21 2235666677777778999999876532
Q ss_pred E----EEec--ce---eeccCEEEEccCCCCCCC
Q 011535 98 S----VSLS--EL---RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 ~----~~~~--~~---~~~yd~vvlAtG~~~~~~ 122 (483)
. +.+. ++ ...+|.||+|+|. .|+.
T Consensus 238 i~~~~v~v~~~~G~~~~i~~D~vv~a~G~-~p~~ 270 (458)
T 1lvl_A 238 YENGCLLANDGKGGQLRLEADRVLVAVGR-RPRT 270 (458)
T ss_dssp EETTEEEEECSSSCCCEECCSCEEECCCE-EECC
T ss_pred EEeCCEEEEECCCceEEEECCEEEECcCC-CcCC
Confidence 1 2222 33 3469999999998 3443
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-05 Score=79.07 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=67.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g--~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~~ 233 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLG--AEVIVLEYMDRIL--------PT--MDLEVSRAAERVFKKQGLTIRTGVRVTA 233 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4689999999999999999999998 9999999987642 22 2245666677777778999998865521
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.||+|+|..
T Consensus 234 i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~ 263 (455)
T 2yqu_A 234 VVPEAKGARVELEGGEVLEADRVLVAVGRR 263 (455)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred EEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence 1223233 34699999999983
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4e-05 Score=78.37 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=67.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 168 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 235 (464)
T 2eq6_A 168 LPKRLLVIGGGAVGLELGQVYRRLG--AEVTLIEYMPEIL--------PQ--GDPETAALLRRALEKEGIRVRTKTKAVG 235 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhcCCEEEcCCEEEE
Confidence 3589999999999999999999998 9999999987642 22 2345666777788888999999876531
Q ss_pred --------EEEec-c--e---eeccCEEEEccCC
Q 011535 98 --------SVSLS-E--L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~-~--~---~~~yd~vvlAtG~ 117 (483)
.+.+. + + ...+|.||+|+|.
T Consensus 236 i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~ 269 (464)
T 2eq6_A 236 YEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR 269 (464)
T ss_dssp EEEETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred EEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence 13333 3 3 3469999999997
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.6e-05 Score=75.81 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+..
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i 213 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGG--YQLDVVAPCEQVM--------PGL-LHPAAAKAVQAGLEGLGVRFHLGPVLASL 213 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTT-SCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCcchh--------hcc-cCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 689999999999999999999999 9999999987642 211 1245667777888888999998865421
Q ss_pred -------EEEeccee-eccCEEEEccCC
Q 011535 98 -------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 -------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 214 ~~~~~~~~v~~~~g~~i~~d~vv~a~G~ 241 (384)
T 2v3a_A 214 KKAGEGLEAHLSDGEVIPCDLVVSAVGL 241 (384)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred EecCCEEEEEECCCCEEECCEEEECcCC
Confidence 23344442 469999999997
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.6e-05 Score=76.52 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=68.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 212 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVTG 212 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT-TSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCccc--------cc-ccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987642 21 12235666677778888999999866532
Q ss_pred ----EEEecce-eeccCEEEEccCC
Q 011535 98 ----SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ----~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.+.++ ...+|.||+|+|.
T Consensus 213 i~~~~v~~~~g~~i~~D~vi~a~G~ 237 (408)
T 2gqw_A 213 SVDGVVLLDDGTRIAADMVVVGIGV 237 (408)
T ss_dssp EETTEEEETTSCEEECSEEEECSCE
T ss_pred EECCEEEECCCCEEEcCEEEECcCC
Confidence 3444444 3469999999997
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=78.29 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ 56 (483)
....+|+|||||++|+++|..|++ ++ ..+|+|||+.+..
T Consensus 19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G-~~~V~vlE~~~~~ 58 (405)
T 2gag_B 19 KKSYDAIIVGGGGHGLATAYFLAKNHG-ITNVAVLEKGWLA 58 (405)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHHHC-CCCEEEECSSSTT
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHhcC-CCcEEEEeCCCCC
Confidence 345799999999999999999999 75 2699999998743
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=5.9e-05 Score=77.61 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=68.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+.
T Consensus 192 ~~~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 260 (490)
T 2bc0_A 192 KDIKRVAVVGAGYIGVELAEAFQRKG--KEVVLIDVVDTCL--------AG-YYDRDLTDLMAKNMEEHGIQLAFGETVK 260 (490)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEETCCEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEEcccchh--------hh-HHHHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence 35789999999999999999999998 9999999987642 21 1224566777788888899999986553
Q ss_pred e--------EEEecceeeccCEEEEccCC
Q 011535 97 S--------SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~~~~~yd~vvlAtG~ 117 (483)
. .+.++.....+|.||+|+|.
T Consensus 261 ~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~ 289 (490)
T 2bc0_A 261 EVAGNGKVEKIITDKNEYDVDMVILAVGF 289 (490)
T ss_dssp EEECSSSCCEEEESSCEEECSEEEECCCE
T ss_pred EEEcCCcEEEEEECCcEEECCEEEECCCC
Confidence 2 12332223469999999997
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.8e-05 Score=77.69 Aligned_cols=93 Identities=12% Similarity=0.167 Sum_probs=69.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 164 ~~~~~vvVvGgG~~g~e~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~ 231 (463)
T 2r9z_A 164 QQPKRVAIIGAGYIGIELAGLLRSFG--SEVTVVALEDRLL--------FQ--FDPLLSATLAENMHAQGIETHLEFAVA 231 (463)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEESSCCEE
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999887542 21 123555667777888899999886542
Q ss_pred --------eEEEeccee--eccCEEEEccCCCCCCC
Q 011535 97 --------SSVSLSELR--QLYHVVVLAYGAESDRA 122 (483)
Q Consensus 97 --------~~~~~~~~~--~~yd~vvlAtG~~~~~~ 122 (483)
..+.+.++. ..+|.||+|+|. .|+.
T Consensus 232 ~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~ 266 (463)
T 2r9z_A 232 ALERDAQGTTLVAQDGTRLEGFDSVIWAVGR-APNT 266 (463)
T ss_dssp EEEEETTEEEEEETTCCEEEEESEEEECSCE-EESC
T ss_pred EEEEeCCeEEEEEeCCcEEEEcCEEEECCCC-CcCC
Confidence 134444554 579999999998 3443
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.2e-05 Score=77.53 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. | ...++...+.+.+++.|++++.++.+..
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 241 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLG--SKVTVLARNTLFF--------R---EDPAIGEAVTAAFRAEGIEVLEHTQASQ 241 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------T---SCHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEECCccC--------C---CCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 4689999999999999999999999 9999999987542 3 1235667777788888999998865522
Q ss_pred --------EEEecceeeccCEEEEccCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+.++.....+|.||+|+|..
T Consensus 242 i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~ 270 (467)
T 1zk7_A 242 VAHMDGEFVLTTTHGELRADKLLVATGRT 270 (467)
T ss_dssp EEEETTEEEEEETTEEEEESEEEECSCEE
T ss_pred EEEeCCEEEEEECCcEEEcCEEEECCCCC
Confidence 133334445799999999983
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=74.86 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=70.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |.. ...++...+.+.+++.|++++.++.+..
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 214 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVKMK--KTVHVFESLENLL--------PKY-FDKEMVAEVQKSLEKQAVIFHFEETVLG 214 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTT-CCHHHHHHHHHHHHTTTEEEEETCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCccc--------ccc-CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4589999999999999999999999 9999999987642 211 1245667788888889999998866532
Q ss_pred --------EEEecceeeccCEEEEccCCCCCCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~~~~~~ 122 (483)
.+.+++....+|.||+|+|. .|..
T Consensus 215 i~~~~~~v~v~~~~g~i~aD~Vv~A~G~-~p~~ 246 (452)
T 3oc4_A 215 IEETANGIVLETSEQEISCDSGIFALNL-HPQL 246 (452)
T ss_dssp EEECSSCEEEEESSCEEEESEEEECSCC-BCCC
T ss_pred EEccCCeEEEEECCCEEEeCEEEECcCC-CCCh
Confidence 13344445579999999998 3433
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=79.25 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC-CCCCCcee
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGLVR 61 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~-~~~ggl~~ 61 (483)
....++|+|||||++||+||..|.+.+ ++|+|+|+. +.+||.+.
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~ 85 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIK 85 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCC
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCcee
Confidence 345689999999999999999999999 999999999 88888643
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=8.5e-05 Score=75.65 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNALAKG 236 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987642 22 2245666777778888999999876522
Q ss_pred --------EEEec---ce-eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~-~~~yd~vvlAtG~ 117 (483)
.+.+. +. ...+|.||+|+|.
T Consensus 237 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 268 (455)
T 1ebd_A 237 AEEREDGVTVTYEANGETKTIDADYVLVTVGR 268 (455)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred EEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence 12222 22 2469999999998
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.5e-06 Score=84.02 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||++||+||.+|++.| |+.+|+|+|+.+.+||...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 479999999999999999999987 6789999999998887643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=80.81 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+++|+|||||||||++|..|+++| ++|+|||+.+.+
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~~~ 36 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNSAA 36 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCCCC
Confidence 368999999999999999999999 999999998754
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=81.53 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=36.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||++||+||..|++.+ .+|+|+|+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSAMIGGRFT 40 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCCceeE
Confidence 58999999999999999999999 99999999999887643
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.1e-05 Score=77.87 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||++|+.+|..|.+.+ .+|+++++.+.+.. . ...++...+.+.+++.|++++.++.+..
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~--------~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 252 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELG--KKVRMIERNDHIGT--------I--YDGDMAEYIYKEADKHHIEILTNENVKA 252 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTT--CEEEEECCGGGTTS--------S--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCchhh--------c--CCHHHHHHHHHHHHHcCcEEEcCCEEEE
Confidence 5689999999999999999999998 99999998875432 1 1245666777788888999998865521
Q ss_pred --------EEEecceeeccCEEEEccCC
Q 011535 98 --------SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+.++.....+|.||+|+|.
T Consensus 253 i~~~~~v~~v~~~~~~i~~D~vi~a~G~ 280 (480)
T 3cgb_A 253 FKGNERVEAVETDKGTYKADLVLVSVGV 280 (480)
T ss_dssp EEESSBEEEEEETTEEEECSEEEECSCE
T ss_pred EEcCCcEEEEEECCCEEEcCEEEECcCC
Confidence 12333334579999999997
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.7e-05 Score=78.97 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~ 98 (483)
.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+...
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~gV~~~~~~~v~~i 214 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSG--TPASIGIILEYPL--------ERQ-LDRDGGLFLKDKLDRLGIKIYTNSNFEEM 214 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSC--------TTT-SCHHHHHHHHHHHHTTTCEEECSCCGGGC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccc--------hhh-cCHHHHHHHHHHHHhCCCEEEeCCEEEEc
Confidence 579999999999999999999999 9999999987642 211 12356667778888889999998765321
Q ss_pred EEecceeeccCEEEEccCC
Q 011535 99 VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 99 ~~~~~~~~~yd~vvlAtG~ 117 (483)
.....+|.||+|+|.
T Consensus 215 ----g~~~~~D~vv~a~G~ 229 (385)
T 3klj_A 215 ----GDLIRSSCVITAVGV 229 (385)
T ss_dssp ----HHHHHHSEEEECCCE
T ss_pred ----CeEEecCeEEECcCc
Confidence 122469999999997
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.86 E-value=8e-05 Score=74.85 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ....++...+.+.++..|++++.++.+..
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 220 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFG--VNVTLLEALPRVL--------AR-VAGEALSEFYQAEHRAHGVDLRTGAAMDCI 220 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCchh--------hh-hcCHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence 689999999999999999999999 9999999987642 11 12245667778888888999998866521
Q ss_pred --------EEEeccee-eccCEEEEccCCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 221 ~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~ 250 (415)
T 3lxd_A 221 EGDGTKVTGVRMQDGSVIPADIVIVGIGIV 250 (415)
T ss_dssp EESSSBEEEEEESSSCEEECSEEEECSCCE
T ss_pred EecCCcEEEEEeCCCCEEEcCEEEECCCCc
Confidence 23444443 4699999999983
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.6e-05 Score=78.04 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=68.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc--
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-- 96 (483)
.++|+|||||+.|+.+|..+.+.+ .+|+|+++.+.+. |.. ..++...+.+.++..+++++.+..+.
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~ll--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~~ 214 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERG--LHPTLIHRSDKIN--------KLM--DADMNQPILDELDKREIPYRLNEEINAI 214 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSCCS--------TTS--CGGGGHHHHHHHHHTTCCEEESCCEEEE
T ss_pred CcEEEEECCccchhhhHHHHHhcC--Ccceeeeeecccc--------ccc--cchhHHHHHHHhhccceEEEeccEEEEe
Confidence 579999999999999999999999 9999999987642 221 12344556677777899999987763
Q ss_pred --eEEEeccee-eccCEEEEccCCCCCC
Q 011535 97 --SSVSLSELR-QLYHVVVLAYGAESDR 121 (483)
Q Consensus 97 --~~~~~~~~~-~~yd~vvlAtG~~~~~ 121 (483)
..+.++++. ..+|.|++|+|. .|+
T Consensus 215 ~~~~v~~~~g~~~~~D~vl~a~G~-~Pn 241 (437)
T 4eqs_A 215 NGNEITFKSGKVEHYDMIIEGVGT-HPN 241 (437)
T ss_dssp ETTEEEETTSCEEECSEEEECCCE-EES
T ss_pred cCCeeeecCCeEEeeeeEEEEece-ecC
Confidence 245555554 469999999997 343
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.1e-05 Score=76.84 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 251 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNTKTVA 251 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------cc--cCHHHHHHHHHHHHhcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987642 22 2345667778888888999999876521
Q ss_pred --------EEEecc----e-eeccCEEEEccCC
Q 011535 98 --------SVSLSE----L-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~----~-~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 252 i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 252 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 233333 2 2469999999997
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.3e-05 Score=80.69 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=36.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
++|+|||||.+||+||.+|++++ .+|+|+|+.+.+||..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~ 39 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRF 39 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCce
Confidence 58999999999999999999999 9999999999988764
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.3e-05 Score=82.01 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=37.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||++||+||++|++.+ . +|+|+|+.+.+||...
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~~~GG~~~ 44 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSERLGGWIR 44 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSSSSBTTCC
T ss_pred CceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCCCCCCceE
Confidence 369999999999999999999998 7 9999999999888764
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00012 Score=75.08 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 182 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 249 (478)
T 1v59_A 182 IPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQIG--------AS--MDGEVAKATQKFLKKQGLDFKLSTKVIS 249 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987643 21 1245666777788888999999876532
Q ss_pred ----------EEEec-----ce-eeccCEEEEccCC
Q 011535 98 ----------SVSLS-----EL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ----------~~~~~-----~~-~~~yd~vvlAtG~ 117 (483)
.+.+. +. ...+|.||+|+|.
T Consensus 250 i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 285 (478)
T 1v59_A 250 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR 285 (478)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred EEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence 12222 11 2469999999997
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00012 Score=75.38 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=68.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 196 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~v~~~~~v~ 263 (491)
T 3urh_A 196 KVPASMIVVGGGVIGLELGSVWARLG--AKVTVVEFLDTIL--------GG--MDGEVAKQLQRMLTKQGIDFKLGAKVT 263 (491)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecccccc--------cc--CCHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 45689999999999999999999999 9999999887642 22 234566777778888899999987653
Q ss_pred e--------EEEecc---e---eeccCEEEEccCC
Q 011535 97 S--------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.||+|+|.
T Consensus 264 ~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 264 GAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp EEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred EEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 2 133321 2 3469999999997
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2e-05 Score=81.02 Aligned_cols=42 Identities=33% Similarity=0.479 Sum_probs=38.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...++|+|||||+|||+||..|.+.+ .+|+|+|+.+.+||..
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~ 50 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRV 50 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCce
Confidence 35689999999999999999999999 9999999999999864
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=8.5e-05 Score=75.56 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 165 ~~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 232 (450)
T 1ges_A 165 ALPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PS--FDPMISETLVEVMNAEGPQLHTNAIPK 232 (450)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhcC--CEEEEEEeCCchh--------hh--hhHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999987642 22 123566667777777899999886542
Q ss_pred e---------EEEecce-eeccCEEEEccCC
Q 011535 97 S---------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+.++ ...+|.||+|+|.
T Consensus 233 ~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~ 263 (450)
T 1ges_A 233 AVVKNTDGSLTLELEDGRSETVDCLIWAIGR 263 (450)
T ss_dssp EEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence 1 2334444 2469999999998
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.2e-05 Score=75.96 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++++|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 183 ~~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~ 250 (479)
T 2hqm_A 183 EQPKKVVVVGAGYIGIELAGVFHGLG--SETHLVIRGETVL--------RK--FDECIQNTITDHYVKEGINVHKLSKIV 250 (479)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred ccCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEeCCccc--------cc--cCHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence 35689999999999999999999999 9999999987642 22 123566667777777899999886542
Q ss_pred ----------eEEEecce--eeccCEEEEccCCCCCCC
Q 011535 97 ----------SSVSLSEL--RQLYHVVVLAYGAESDRA 122 (483)
Q Consensus 97 ----------~~~~~~~~--~~~yd~vvlAtG~~~~~~ 122 (483)
..+.+.++ ...+|.||+|+|. .|..
T Consensus 251 ~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~ 287 (479)
T 2hqm_A 251 KVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR-KSHL 287 (479)
T ss_dssp EEEECC-CCCEEEEETTSCEEEEESEEEECSCE-EECC
T ss_pred EEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC-CCcc
Confidence 12444454 3469999999997 3443
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=75.98 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gv~i~~~~~v~~i 243 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRIL--------RK--FDESVINVLENDMKKNNINIVTFADVVEI 243 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHcC--CeEEEEecCCccC--------cc--cchhhHHHHHHHHHhCCCEEEECCEEEEE
Confidence 789999999999999999999998 9999999987642 22 1235666777788888999998865421
Q ss_pred --------EEEeccee--eccCEEEEccCCC
Q 011535 98 --------SVSLSELR--QLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~~--~~yd~vvlAtG~~ 118 (483)
.+.+.++. ..+|.||+|+|..
T Consensus 244 ~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~ 274 (500)
T 1onf_A 244 KKVSDKNLSIHLSDGRIYEHFDHVIYCVGRS 274 (500)
T ss_dssp EESSTTCEEEEETTSCEEEEESEEEECCCBC
T ss_pred EEcCCceEEEEECCCcEEEECCEEEECCCCC
Confidence 23444443 4799999999983
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=74.56 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++.. ++++.++.+
T Consensus 171 ~~~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~-V~i~~~~~v 237 (492)
T 3ic9_A 171 NDLPKSVAVFGPGVIGLELGQALSRLG--VIVKVFGRSGSVA--------NL--QDEEMKRYAEKTFNEE-FYFDAKARV 237 (492)
T ss_dssp SSCCSEEEEESSCHHHHHHHHHHHHTT--CEEEEECCTTCCT--------TC--CCHHHHHHHHHHHHTT-SEEETTCEE
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------cc--CCHHHHHHHHHHHhhC-cEEEECCEE
Confidence 345789999999999999999999999 9999999988642 21 1235666677777766 999988765
Q ss_pred ce--------EEEec--ce---eeccCEEEEccCCCCCC
Q 011535 96 GS--------SVSLS--EL---RQLYHVVVLAYGAESDR 121 (483)
Q Consensus 96 ~~--------~~~~~--~~---~~~yd~vvlAtG~~~~~ 121 (483)
.. .+.+. ++ ...+|.||+|+|. .|.
T Consensus 238 ~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~-~p~ 275 (492)
T 3ic9_A 238 ISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR-KAN 275 (492)
T ss_dssp EEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC-EES
T ss_pred EEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC-ccC
Confidence 32 13332 23 3469999999998 344
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=73.32 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=68.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+..
T Consensus 141 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 209 (404)
T 3fg2_P 141 DKKHVVVIGAGFIGLEFAATARAKG--LEVDVVELAPRVM--------AR-VVTPEISSYFHDRHSGAGIRMHYGVRATE 209 (404)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCcch--------hh-ccCHHHHHHHHHHHHhCCcEEEECCEEEE
Confidence 3689999999999999999999999 9999999987642 11 12245667777888888999998865421
Q ss_pred ---------EEEeccee-eccCEEEEccCC
Q 011535 98 ---------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 210 i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 210 IAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp EEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred EEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 24444443 469999999998
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.6e-05 Score=80.35 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=36.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
++|+|||||++|++||..|++.| .+|+|+|+.+.+||..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~ 40 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRA 40 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTC
T ss_pred CCEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCee
Confidence 58999999999999999999999 9999999988887754
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=80.51 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||..|++.| .+|+|+|+++.+||...
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~ 51 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA 51 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCcccc
Confidence 4579999999999999999999999 99999999999999764
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=75.83 Aligned_cols=87 Identities=10% Similarity=-0.013 Sum_probs=68.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce--
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-- 97 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~-- 97 (483)
++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 282 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTRIE 282 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccc--------cc--ccHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence 89999999999999999999999 9999999987642 22 2345667778888888999999876521
Q ss_pred ----------EEEecce--eeccCEEEEccCCC
Q 011535 98 ----------SVSLSEL--RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ----------~~~~~~~--~~~yd~vvlAtG~~ 118 (483)
.+.+.++ ...+|.||+|+|..
T Consensus 283 ~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~ 315 (523)
T 1mo9_A 283 EDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315 (523)
T ss_dssp ECTTSBEEEEEEEETTEEEEEECSCEEECCCCE
T ss_pred EcCCCceEEEEEEECCCcEEEEcCEEEECcCCc
Confidence 2344454 34699999999983
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=74.68 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
...++++|||||+.|+.+|..|.+. + .+|+++++.+.+. |. ...++...+.+.+++.|++|+.++
T Consensus 185 ~~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~ 252 (490)
T 1fec_A 185 EAPKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGDMIL--------RG--FDSELRKQLTEQLRANGINVRTHE 252 (490)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETC
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhhccCc--CeEEEEEcCCCcc--------cc--cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 3468999999999999999999999 7 9999999987642 22 123566777788888899999986
Q ss_pred EEce---------EEEecce-eeccCEEEEccCC
Q 011535 94 TLGS---------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 94 ~v~~---------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.. .+.+.++ ...+|.||+|+|.
T Consensus 253 ~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 253 NPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp CEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 5521 2334444 3469999999997
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00017 Score=73.91 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC-CCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP-DHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p-~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. | . ...++...+.+.+++.|++++.++.+.
T Consensus 177 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 244 (474)
T 1zmd_A 177 VPEKMVVIGAGVIGVELGSVWQRLG--ADVTAVEFLGHVG--------GVG--IDMEISKNFQRILQKQGFKFKLNTKVT 244 (474)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------CSS--CCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEeccCccC--------Ccc--cCHHHHHHHHHHHHHCCCEEEeCceEE
Confidence 4689999999999999999999999 9999999987542 2 1 124566677778888899999987663
Q ss_pred e---------EEEe-----cce-eeccCEEEEccCC
Q 011535 97 S---------SVSL-----SEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~-----~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+ .+. ...+|.||+|+|.
T Consensus 245 ~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~ 280 (474)
T 1zmd_A 245 GATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280 (474)
T ss_dssp EEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred EEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence 2 1221 121 2469999999997
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00018 Score=73.66 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=67.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 185 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~~~~~l~~~gv~i~~~~~v~ 252 (478)
T 3dk9_A 185 ELPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL--------RS--FDSMISTNCTEELENAGVEVLKFSQVK 252 (478)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred hcCccEEEECCCHHHHHHHHHHHHcC--CeEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999887642 22 124566677778888899999987652
Q ss_pred e----------EEEecc--------eeeccCEEEEccCC
Q 011535 97 S----------SVSLSE--------LRQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~----------~~~~~~--------~~~~yd~vvlAtG~ 117 (483)
. .+.+.+ ....+|.||+|+|.
T Consensus 253 ~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 253 EVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp EEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred EEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 1 123332 23469999999997
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=82.04 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+|||||+|||+||..|++.| .+|+|+|+++.+||...
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTY 44 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCC
T ss_pred CceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcee
Confidence 468999999999999999999998 99999999999988754
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=78.06 Aligned_cols=43 Identities=33% Similarity=0.340 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
....+|+|||||++|+++|..|++.+ .+|+|+|+.+.+||.+.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSG--QRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCC--CceEEEeccCCCCCccc
Confidence 34679999999999999999999998 99999999999888754
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0001 Score=80.97 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
..+|+|||||++|+++|+.|++++ . +|+|||+.+.
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G--~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCC
Confidence 579999999999999999999998 8 9999999875
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-05 Score=80.08 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.++|+|||||++||++|..|++.+++.+|+|+|+.+.+||..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~ 45 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV 45 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence 579999999999999999999998889999999998888754
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=73.49 Aligned_cols=89 Identities=15% Similarity=0.287 Sum_probs=68.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..|++++.++.+.
T Consensus 178 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~v~~~~~v~ 245 (476)
T 3lad_A 178 NVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGARVT 245 (476)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEECCEEE
Confidence 35689999999999999999999999 9999999987542 22 234566777788888899999987653
Q ss_pred e--------EEEecc--e--eeccCEEEEccCC
Q 011535 97 S--------SVSLSE--L--RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~--~--~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.||+|+|.
T Consensus 246 ~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 246 GTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp EEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred EEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 2 133332 1 3469999999997
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6e-05 Score=75.68 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=67.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.... ...++...+.+.+++.|++++.++.+..
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 210 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLG--LSVTILEAGDELLVRV---------LGRRIGAWLRGLLTELGVQVELGTGVVG 210 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSHHH---------HCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccchhh---------cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987643110 1134566677777788999998876532
Q ss_pred --------EEEeccee-eccCEEEEccCC
Q 011535 98 --------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 211 i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~ 239 (410)
T 3ef6_A 211 FSGEGQLEQVMASDGRSFVADSALICVGA 239 (410)
T ss_dssp EECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred EeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence 24444443 469999999998
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.4e-05 Score=81.21 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.++|+|||||++||+||..|++.+ .+|+|+|+++.+||..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAG--LSVAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCCCCCce
Confidence 469999999999999999999998 9999999999998865
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=74.10 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIVEFLPRAL--------PN--EDADVSKEIEKQFKKLGVTILTATKVES 237 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEECSCEEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCcEEEE
Confidence 4689999999999999999999999 9999999987542 32 2245666677777888999999876532
Q ss_pred --------EEEec-ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS-EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~-~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 238 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~ 269 (464)
T 2a8x_A 238 IADGGSQVTVTVTKDGVAQELKAEKVLQAIGF 269 (464)
T ss_dssp EEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred EEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence 12332 22 3469999999997
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00016 Score=74.57 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhc---CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~---~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
...++++|||+|+.|+.+|..|.+. + .+|+++++.+.+. |. ...++...+.+.++..|++|+.++
T Consensus 189 ~~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~ 256 (495)
T 2wpf_A 189 EPPRRVLTVGGGFISVEFAGIFNAYKPPG--GKVTLCYRNNLIL--------RG--FDETIREEVTKQLTANGIEIMTNE 256 (495)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEESC
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhCCCEEEeCC
Confidence 3468999999999999999999999 7 9999999987642 22 123566677778888899999986
Q ss_pred EEce---------EEEecce-eeccCEEEEccCC
Q 011535 94 TLGS---------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 94 ~v~~---------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.. .+.+.++ ...+|.||+|+|.
T Consensus 257 ~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 257 NPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp CEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 5521 2334444 3469999999997
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.9e-05 Score=78.23 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++||+||..|++.++ .+|+|+|+.+.+||.+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCH 47 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCccc
Confidence 46799999999999999999999862 69999999999988654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=73.29 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHH-hcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~v~ 96 (483)
.+++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+ ++.|++++.++.+.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~~gv~i~~~~~v~ 240 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLG--AEVTVVEFAPRCA--------PT--LDEDVTNALVGALAKNEKMKFMTSTKVV 240 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCCEEECSCEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CEEEEEecCCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence 4689999999999999999999999 9999999987642 22 2345666777778 88899999987652
Q ss_pred e--------EEEec--ce---eeccCEEEEccCC
Q 011535 97 S--------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
. .+.+. ++ ...+|.||+|+|.
T Consensus 241 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~ 274 (468)
T 2qae_A 241 GGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR 274 (468)
T ss_dssp EEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred EEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence 1 22332 33 3469999999997
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.5e-05 Score=78.16 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=38.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+|||||++||++|..|++. + .+|+|+|+.+.+||...
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g--~~v~v~E~~~~~GG~~~ 48 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLD--KRVLVLERRPHIGGNAY 48 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSC--CCEEEECSSSSSSGGGC
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeee
Confidence 57999999999999999999999 8 99999999999988754
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00017 Score=73.40 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |.. ...++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 216 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQN--YNVNLIDGHERVL--------YKY-FDKEFTDILAKDYEAHGVNLVLGSKVAA 216 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSTT--------TTT-SCHHHHHHHHHHHHHTTCEEEESSCEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcC--CEEEEEEcCCchh--------hhh-hhhhHHHHHHHHHHHCCCEEEcCCeeEE
Confidence 4689999999999999999999998 9999999987542 211 2235666777888888999999865522
Q ss_pred E---------EEecceeeccCEEEEccCC
Q 011535 98 S---------VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~---------~~~~~~~~~yd~vvlAtG~ 117 (483)
. +..+.....+|.||+|+|.
T Consensus 217 i~~~~~~v~~v~~~g~~i~~D~vv~a~G~ 245 (452)
T 2cdu_A 217 FEEVDDEIITKTLDGKEIKSDIAILCIGF 245 (452)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence 1 2222223469999999997
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.4e-05 Score=80.11 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=37.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
...++|+|||||++||+||..|++.| .+|+|+|+.+.+||.+.
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG 56 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceee
Confidence 35689999999999999999999998 99999999999988653
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=73.01 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=69.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
....++++|||+|+.|+.+|..+.+.+ .+|+++++.+.+. +. ...++...+.+.++..|++++.++.+
T Consensus 167 ~~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vt~v~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v 234 (463)
T 4dna_A 167 PALPESILIAGGGYIAVEFANIFHGLG--VKTTLIYRGKEIL--------SR--FDQDMRRGLHAAMEEKGIRILCEDII 234 (463)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 345789999999999999999999998 9999999887532 22 12356677788888889999998655
Q ss_pred ce---------EEE-ecceeeccCEEEEccCC
Q 011535 96 GS---------SVS-LSELRQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~---------~~~-~~~~~~~yd~vvlAtG~ 117 (483)
.. .+. +.++...+|.||+|+|.
T Consensus 235 ~~i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~ 266 (463)
T 4dna_A 235 QSVSADADGRRVATTMKHGEIVADQVMLALGR 266 (463)
T ss_dssp EEEEECTTSCEEEEESSSCEEEESEEEECSCE
T ss_pred EEEEEcCCCEEEEEEcCCCeEEeCEEEEeeCc
Confidence 21 244 44444569999999997
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.68 E-value=3e-05 Score=78.46 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 4579999999999999999999999 9999999886
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00014 Score=74.31 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 243 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKTKVVG 243 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--ccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999987642 32 2245666777788888999999876532
Q ss_pred --------EEEec---ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 277 (470)
T 1dxl_A 244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR 277 (470)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred EEEcCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence 22332 22 3469999999998
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00029 Score=67.72 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ...+...+.+.+++.|++++.++.+..
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~~~~l~~~l~~~gv~i~~~~~v~~ 209 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------A----EKILIKRLMDKVENGNIILHTNRTLEE 209 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------C----CHHHHHHHHHHHHTSSEEEECSCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCccc--------c----CHHHHHHHHHhcccCCeEEEcCceeEE
Confidence 4689999999999999999999998 9999999876531 1 134455666677778999998876522
Q ss_pred ---------EEEecc----e---eeccCEEEEccCC
Q 011535 98 ---------SVSLSE----L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~----~---~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 210 i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~ 245 (320)
T 1trb_A 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 245 (320)
T ss_dssp EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred EEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence 133332 2 3469999999997
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00021 Score=72.24 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=66.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.++..|++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 216 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVL--------ERV-TAPPVSAFYEHLHREAGVDIRTGTQVCG 216 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TTT-SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCccc--------cch-hhHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 4689999999999999999999999 9999999887642 111 1234556677777778999998865421
Q ss_pred -----------EEEeccee-eccCEEEEccCC
Q 011535 98 -----------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 -----------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 217 FEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp EEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred EEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 13333332 469999999997
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=4.9e-05 Score=75.96 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 61 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDNDR 61 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCc
Confidence 4579999999999999999999999 999999998653
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.2e-05 Score=79.64 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=37.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||+|||+||..|.+.+ ++|+|+|+.+.+||.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcce
Confidence 79999999999999999999999 99999999999988653
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.7e-05 Score=80.74 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=37.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..++|+|||||+|||+||..|.+.| ..+|+|+|+.+.+||.+
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCce
Confidence 3479999999999999999999986 37999999999999865
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=75.34 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=68.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 253 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERG--IEVTLVEMANQVM--------PP--IDYEMAAYVHEHMKNHDVELVFEDGVDA 253 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccc--------cc--CCHHHHHHHHHHHHHcCCEEEECCeEEE
Confidence 4689999999999999999999999 9999999877532 22 2345667777888888999998876532
Q ss_pred ------EEEeccee-eccCEEEEccCC
Q 011535 98 ------SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 98 ------~~~~~~~~-~~yd~vvlAtG~ 117 (483)
.+.+.++. ..+|.||+|+|.
T Consensus 254 i~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (588)
T 3ics_A 254 LEENGAVVRLKSGSVIQTDMLILAIGV 280 (588)
T ss_dssp EEGGGTEEEETTSCEEECSEEEECSCE
T ss_pred EecCCCEEEECCCCEEEcCEEEEccCC
Confidence 24444443 469999999997
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.63 E-value=4.1e-05 Score=79.00 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..++|+|||||++||++|..|++.+ ++|+|+|+.+.+||.+
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 52 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKL 52 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCce
Confidence 3579999999999999999999999 9999999999998864
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00028 Score=72.67 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=68.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.++..|++++.++.+..
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~V~~ 248 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL--------PY--EDADAALVLEESFAERGVRLFKNARAAS 248 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTT--CCEEEECSSSSSS--------CC--SSHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999998 9999999887642 22 2335667778888888999999866522
Q ss_pred --------EEEecce-eeccCEEEEccCCC
Q 011535 98 --------SVSLSEL-RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~~~-~~~yd~vvlAtG~~ 118 (483)
.+...++ ...+|.||+|+|..
T Consensus 249 i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~ 278 (499)
T 1xdi_A 249 VTRTGAGVLVTMTDGRTVEGSHALMTIGSV 278 (499)
T ss_dssp EEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred EEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence 1222333 34699999999983
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00027 Score=72.55 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=68.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 189 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~ 256 (484)
T 3o0h_A 189 KLPKSIVIVGGGYIGVEFANIFHGLG--VKTTLLHRGDLIL--------RN--FDYDLRQLLNDAMVAKGISIIYEATVS 256 (484)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEESSCCEE
T ss_pred hcCCcEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 45789999999999999999999998 9999999887542 22 123566667777777899999886653
Q ss_pred e--------EEEecce-eeccCEEEEccCC
Q 011535 97 S--------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+.++ ...+|.||+|+|.
T Consensus 257 ~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 257 QVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp EEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred EEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 2 2444444 3469999999997
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=5.1e-05 Score=75.51 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=37.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+|||||++|+++|..|.+.+ .+|+|+|+.+.+||.+.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecCCcCCccc
Confidence 469999999999999999999998 99999999999888654
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-05 Score=76.35 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~gg 58 (483)
...+|+|||||++|+++|+.|++++ . +|+|+|+.+.+++
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~~~~~ 44 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYPVPSA 44 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSCSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCCC
Confidence 3579999999999999999999999 8 9999999987654
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0004 Score=70.46 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +.. ...++...+.+.+++. ++++.++.+..
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~-v~i~~~~~v~~ 214 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQG--KNVTMIVRGERVL--------RRS-FDKEVTDILEEKLKKH-VNLRLQEITMK 214 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TTT-SCHHHHHHHHHHHTTT-SEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccc--------hhh-cCHHHHHHHHHHHHhC-cEEEeCCeEEE
Confidence 4579999999999999999999999 9999999987642 210 1235666777777777 99988866532
Q ss_pred E--------EEecceeeccCEEEEccCC
Q 011535 98 S--------VSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~--------~~~~~~~~~yd~vvlAtG~ 117 (483)
. +..+.....+|.||+|+|.
T Consensus 215 i~~~~~v~~v~~~g~~i~~D~Vv~a~G~ 242 (449)
T 3kd9_A 215 IEGEERVEKVVTDAGEYKAELVILATGI 242 (449)
T ss_dssp EECSSSCCEEEETTEEEECSEEEECSCE
T ss_pred EeccCcEEEEEeCCCEEECCEEEEeeCC
Confidence 1 2222333469999999997
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=5.3e-05 Score=78.06 Aligned_cols=42 Identities=38% Similarity=0.475 Sum_probs=38.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..+++|+|||||++||++|..|.+.| .+|+|+|+.+.+||.+
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~ 72 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRV 72 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCce
Confidence 34689999999999999999999999 9999999999988864
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.60 E-value=4.2e-05 Score=75.61 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=36.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
++|+|||||++|+++|..|++.+ .+|+|+|+.+.+||..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~ 40 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNA 40 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGG
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCcce
Confidence 58999999999999999999998 9999999999988864
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=6.2e-05 Score=75.52 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ 56 (483)
.++|+||||||+|+++|..|++.| ++ |+|||+.+.+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~~~ 40 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEI 40 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCCCc
Confidence 479999999999999999999999 99 9999998764
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00048 Score=71.34 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++|+|||+|+.|+.+|..|.+.+ .+|+++++... .+.+ ..++...+.+.+++.|++++.+..+
T Consensus 207 ~~~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~---------l~~~--d~~~~~~~~~~l~~~GV~v~~~~~v 273 (519)
T 3qfa_A 207 PYCPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSIL---------LRGF--DQDMANKIGEHMEEHGIKFIRQFVP 273 (519)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCS---------STTS--CHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred hhcCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecccc---------cccC--CHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 344678999999999999999999999 99999997421 1221 2456677777888889999988543
Q ss_pred ce------------EEEe--cce----eeccCEEEEccCC
Q 011535 96 GS------------SVSL--SEL----RQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~------------~~~~--~~~----~~~yd~vvlAtG~ 117 (483)
.. .+.. .++ ...+|.|++|+|.
T Consensus 274 ~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~ 313 (519)
T 3qfa_A 274 IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR 313 (519)
T ss_dssp EEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE
T ss_pred EEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC
Confidence 21 1111 122 2358999999997
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00043 Score=70.96 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++++|||+|+.|+.+|..|.+.+ .+|+++++... .+.. ..++...+.+.+++.|++++.++.+
T Consensus 184 ~~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~---------l~~~--d~~~~~~l~~~l~~~Gv~i~~~~~v 250 (483)
T 3dgh_A 184 DREPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMVRSIV---------LRGF--DQQMAELVAASMEERGIPFLRKTVP 250 (483)
T ss_dssp SSCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCS---------STTS--CHHHHHHHHHHHHHTTCCEEETEEE
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCC---------Cccc--CHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 345689999999999999999999999 99999987431 1221 3456677778888889999998765
Q ss_pred ce---------EEEecce------eeccCEEEEccCC
Q 011535 96 GS---------SVSLSEL------RQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~---------~~~~~~~------~~~yd~vvlAtG~ 117 (483)
.. .+.+.+. ...+|.||+|+|.
T Consensus 251 ~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~ 287 (483)
T 3dgh_A 251 LSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR 287 (483)
T ss_dssp EEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred EEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence 21 1333222 2469999999997
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00043 Score=67.04 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. .+....+.+.++..+++++.+..+..
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~v~~~~~~~--------~~----~~~~~~l~~~l~~~gv~v~~~~~v~~ 216 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTA--RRITLIHRRPQFR--------AH----EASVKELMKAHEEGRLEVLTPYELRR 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCC--------SC----HHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEcCCccC--------cc----HHHHHHHHhccccCCeEEecCCccee
Confidence 4689999999999999999999998 9999999886531 11 23455667777778999999866521
Q ss_pred --------EEEec---ce---eeccCEEEEccCCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~~ 118 (483)
.+.+. ++ ...+|.||+|+|..
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2zbw_A 217 VEGDERVRWAVVFHNQTQEELALEVDAVLILAGYI 251 (335)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred EccCCCeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence 23443 33 34699999999973
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00035 Score=71.45 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=67.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++++|||+|+.|+.+|..|.+. + .+|+++++.+.+. |.. ...++...+.+.+++.|++++.++.+.
T Consensus 158 ~~~~vvViGgG~~g~e~A~~l~~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~ 226 (472)
T 3iwa_A 158 EVSKAVIVGGGFIGLEMAVSLADMWG--IDTTVVELADQIM--------PGF-TSKSLSQMLRHDLEKNDVVVHTGEKVV 226 (472)
T ss_dssp SCSEEEEECCSHHHHHHHHHHHHHHC--CEEEEECSSSSSS--------TTT-SCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--CcEEEEEccCccc--------ccc-cCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 368999999999999999999999 8 9999999887532 211 124566777788888899999986552
Q ss_pred e--------EEEecce-eeccCEEEEccCC
Q 011535 97 S--------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~--------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
. .+.+.++ ...+|.||+|+|.
T Consensus 227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 227 RLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp EEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred EEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 2 1333333 3469999999998
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00036 Score=73.01 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 150 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 217 (565)
T 3ntd_A 150 NVEHATVVGGGFIGLEMMESLHHLG--IKTTLLELADQVM--------TP--VDREMAGFAHQAIRDQGVDLRLGTALSE 217 (565)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEETCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCCccc--------hh--cCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 4579999999999999999999999 9999999987532 31 2245666777778888999998865522
Q ss_pred ---------------------------EEEecce-eeccCEEEEccCC
Q 011535 98 ---------------------------SVSLSEL-RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------------------------~~~~~~~-~~~yd~vvlAtG~ 117 (483)
.+.+.++ ...+|.||+|+|.
T Consensus 218 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV 265 (565)
T ss_dssp EEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred EeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence 1222222 2469999999997
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00032 Score=68.92 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC-eEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~-v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+... ...++..........+.+.+++.+ ++++.+..+.
T Consensus 165 ~~~~vvVvG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~~~~---~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~ 239 (369)
T 3d1c_A 165 NKGQYVVIGGNESGFDAAYQLAKNG--SDIALYTSTTGLNDP---DADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK 239 (369)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTT--CEEEEECC-------------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhcC--CeEEEEecCCCCCCC---CCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence 3579999999999999999999998 999999988654210 011222233455566777777786 9999876542
Q ss_pred e--------EEEecceee--ccCEEEEccCCC
Q 011535 97 S--------SVSLSELRQ--LYHVVVLAYGAE 118 (483)
Q Consensus 97 ~--------~~~~~~~~~--~yd~vvlAtG~~ 118 (483)
. .+.+.++.. .+|.||+|||..
T Consensus 240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~ 271 (369)
T 3d1c_A 240 DIDFNNGQYHISFDSGQSVHTPHEPILATGFD 271 (369)
T ss_dssp EEEEETTEEEEEESSSCCEEESSCCEECCCBC
T ss_pred EEEecCCceEEEecCCeEeccCCceEEeeccC
Confidence 1 233444432 369999999983
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00052 Score=70.50 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
...+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.. +.+ ..++...+.+.++..|++++.++.+
T Consensus 182 ~~~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~l---------~~~--d~~~~~~l~~~l~~~gv~~~~~~~v 248 (488)
T 3dgz_A 182 KESPGKTLVVGASYVALECAGFLTGIG--LDTTVMMRSIPL---------RGF--DQQMSSLVTEHMESHGTQFLKGCVP 248 (488)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCSS---------TTS--CHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEcCccc---------ccC--CHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 345678999999999999999999999 999999985311 221 2456677778888889999988654
Q ss_pred ce---------EEEecc---ee---eccCEEEEccCC
Q 011535 96 GS---------SVSLSE---LR---QLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~---------~~~~~~---~~---~~yd~vvlAtG~ 117 (483)
.. .+.+.+ +. ..+|.||+|+|.
T Consensus 249 ~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~ 285 (488)
T 3dgz_A 249 SHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR 285 (488)
T ss_dssp EEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred EEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence 21 122222 22 358999999997
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=8.5e-05 Score=76.31 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=38.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~ 62 (483)
..++|+|||||++||++|..|++.+ ..+|+|+|+.+.+||.+..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 4689999999999999999999986 2599999999999887654
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00052 Score=70.60 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.++|+|||||+.|+.+|..|.+.+ .+.+|+++++.+.+.+. + ...++...+.+.++..|++++.++.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~----~-----l~~~~~~~~~~~l~~~GV~v~~~~~V~ 250 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK----I-----LPEYLSNWTMEKVRREGVKVMPNAIVQ 250 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT----T-----SCHHHHHHHHHHHHTTTCEEECSCCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc----c-----CCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 689999999999999999998732 12899999887543110 1 123566677778888899999986542
Q ss_pred e--------EEEeccee-eccCEEEEccCCC
Q 011535 97 S--------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~--------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
. .+.+.++. ..+|.||+|+|..
T Consensus 251 ~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~ 281 (493)
T 1m6i_A 251 SVGVSSGKLLIKLKDGRKVETDHIVAAVGLE 281 (493)
T ss_dssp EEEEETTEEEEEETTSCEEEESEEEECCCEE
T ss_pred EEEecCCeEEEEECCCCEEECCEEEECCCCC
Confidence 1 13344443 4699999999983
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00051 Score=66.37 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ...+ ...+.+..|++++.++.+..
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g--~~v~~v~~~~~~~--------~----~~~~---~~~l~~~~gv~i~~~~~v~~ 234 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYG--SKVFMLVRKDHLR--------A----STIM---QKRAEKNEKIEILYNTVALE 234 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccC--------C----CHHH---HHHHHhcCCeEEeecceeEE
Confidence 4689999999999999999999998 9999999887542 1 1112 22233445899998876632
Q ss_pred ---------EEEecc------eeeccCEEEEccCC
Q 011535 98 ---------SVSLSE------LRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~------~~~~yd~vvlAtG~ 117 (483)
.+.+.+ ....+|.||+|+|.
T Consensus 235 i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 269 (338)
T 3itj_A 235 AKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH 269 (338)
T ss_dssp EEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred EEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence 133333 22469999999997
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=9.5e-05 Score=73.31 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=33.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||++|+++|+.|++++ .+|+|||+.+..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 469999999999999999999999 9999999987654
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00014 Score=71.59 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=33.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...+|+|||||++|+++|+.|++++ .+|+|||+....
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~~~ 41 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLPE 41 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccCCC
Confidence 4579999999999999999999998 999999997643
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.7e-05 Score=73.50 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcC----CCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~----~~~~v~lie~~~~ 55 (483)
++|+|||||++|+++|+.|++++ |+.+|+|+|+.+.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 58999999999999999999997 6689999999864
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=73.34 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=33.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
.+|+|||||++|+++|+.|+++| .+|+|+|+.+.++
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~~ 40 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERG--HRVLVLERHTFFN 40 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTTC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCC
Confidence 69999999999999999999999 9999999987654
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=78.09 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...++|+|||||++|+++|..|.+.| ++|+|+|+.+.+||.+
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~ 146 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 146 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcc
Confidence 35689999999999999999999999 9999999999998864
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00014 Score=79.36 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...++|+|||||++||+||..|.+.| ++|+|||+.+.+||.+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 317 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCce
Confidence 35689999999999999999999999 9999999999998864
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=75.88 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+|+|||||+|||++|..|++.| .+|+|+|+.+.++|
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~GG 78 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGWGG 78 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 468999999999999999999999 99999999987654
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=75.35 Aligned_cols=37 Identities=24% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||++|+++|..|++ .| ++|+|||+.+.+
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~~ 43 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAAIP 43 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCCCC
Confidence 35799999999999999999999 77 999999997543
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00018 Score=75.21 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~ 55 (483)
..++|+|||||+||+++|..|++ .+ ++|+|||+.+.
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~ 62 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGT--ADITLLQAPDI 62 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTS--SEEEEEECCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCC--CcEEEEeCCCC
Confidence 46799999999999999999999 76 99999999754
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=73.17 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=38.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
..++|+|||+|++|+++|..|++.| .+|+++|+++.+||...
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~ 46 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGESS 46 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTSC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCcccccc
Confidence 3579999999999999999999999 99999999999988643
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=76.64 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+||||||+|+++|..|++.| ++|+|||+.+.++
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G--~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQ--VGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 368999999999999999999999 9999999987653
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00015 Score=75.31 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHh------------cCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLK------------AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~------------~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||+||+.+|..|++ .+ ++|+|||+.+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G--~~V~liE~~~~~ 54 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK--LNITLIESPDVA 54 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS--CEEEEEECSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC--CeEEEEeCCCCC
Confidence 45799999999999999999999 77 999999987643
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00026 Score=73.25 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEE
Q 011535 260 RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVL 339 (483)
Q Consensus 260 r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi 339 (483)
.+.+.|.+.+. +.|+++++++.+.++. . +++++.++.+.. .+|+..++.+|+||
T Consensus 112 ~l~~~L~~~a~---------~~Gv~i~~~~~V~~v~--~-~~~~v~gv~~~~--------------~dG~~~~i~ad~VI 165 (512)
T 3e1t_A 112 RFDDMLLRNSE---------RKGVDVRERHEVIDVL--F-EGERAVGVRYRN--------------TEGVELMAHARFIV 165 (512)
T ss_dssp HHHHHHHHHHH---------HTTCEEESSCEEEEEE--E-ETTEEEEEEEEC--------------SSSCEEEEEEEEEE
T ss_pred HHHHHHHHHHH---------hCCCEEEcCCEEEEEE--E-ECCEEEEEEEEe--------------CCCCEEEEEcCEEE
Confidence 44455555543 5689999999999997 3 466666665543 13444589999999
Q ss_pred EeeecCC
Q 011535 340 KSIGYKS 346 (483)
Q Consensus 340 ~a~G~~~ 346 (483)
.|+|...
T Consensus 166 ~AdG~~S 172 (512)
T 3e1t_A 166 DASGNRT 172 (512)
T ss_dssp ECCCTTC
T ss_pred ECCCcch
Confidence 9999864
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00018 Score=70.52 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=35.5
Q ss_pred cccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 378 t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
...+|+|++|++ +|-.|.. .|..+|..++.|++..+.+.+.
T Consensus 326 k~~~~Lf~AGqi-~G~~Gy~-eAaa~Gl~AG~naa~~~~g~~p 366 (443)
T 3g5s_A 326 REAEGLYAAGVL-AGVEGYL-ESAATGFLAGLNAARKALGLPP 366 (443)
T ss_dssp TTEEEEEECGGG-GTBCSHH-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCCEEECccc-cccHHHH-HHHHhHHHHHHHHHHHhcCCCC
Confidence 468999999998 5678887 7999999999999999988643
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00079 Score=69.26 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc----ccCCHHHHHHHhcCCCe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ----AACTAKELREILGIKNL 233 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~----~~f~~~el~~~~~~~~~ 233 (483)
...+|+|||+|++|+.+|..|++ .| .+|+|+.+++... ..+....++.+..+.-.
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~--------------------~G-~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~ 149 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELAL--------------------LG-ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAK 149 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHH
T ss_pred CCCCEEEECccHHHHHHHHHHHH--------------------CC-CeEEEEEeccccCCCCcccCChhHHHHHHHcCCc
Confidence 45789999999999999999986 45 4799999885432 11222222222211100
Q ss_pred eEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeee
Q 011535 234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (483)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~ 313 (483)
.. ...+...+. ... ....+.+.|.+.+. +.|+++++++.+.++.... +++....+++...
T Consensus 150 ~~---~~~~~~~~~--~~~----~~~~l~~~L~~~~~---------~~gv~v~~~~~v~~i~~~~-~~~~~~~v~~~~~- 209 (497)
T 2bry_A 150 KF---YGRFCTGTL--DHI----SIRQLQLLLLKVAL---------LLGVEIHWGVKFTGLQPPP-RKGSGWRAQLQPN- 209 (497)
T ss_dssp HH---CTTTTCTTC--CEE----EHHHHHHHHHHHHH---------HTTCEEEESCEEEEEECCC-STTCCBEEEEESC-
T ss_pred cc---ccccccccc--ccC----CHHHHHHHHHHHHH---------hCCCEEEeCCEEEEEEEec-CCCCEEEEEEEEC-
Confidence 00 000000000 000 01233444544443 4689999999999987210 1233333433210
Q ss_pred eeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 314 l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
.+|+..++.+|.||.|+|..+..
T Consensus 210 ------------~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 210 ------------PPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp ------------CCHHHHTCCBSEEEECCCTTCCC
T ss_pred ------------CCCCEEEEEcCEEEECCCCCccc
Confidence 01222468999999999988743
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0004 Score=72.07 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=35.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSV 347 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~ 347 (483)
+.|+++++++.+.++. . +++++..|++.+ | +++.||.||+|+|..+.
T Consensus 232 ~~Gv~I~~~t~V~~I~--~-~~~~v~gV~l~~----------------G--~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 232 ELGGEIRFSTRVDDLH--M-EDGQITGVTLSN----------------G--EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HTTCEEESSCCEEEEE--E-SSSBEEEEEETT----------------S--CEEECSCEEECCCTTCH
T ss_pred hcCCEEEeCCEEEEEE--E-eCCEEEEEEECC----------------C--CEEECCEEEECCCCChh
Confidence 5689999999999997 4 355565554421 2 37999999999999874
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00017 Score=75.51 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
.....+|+|||||++|+.+|..|+++| .+|+|+|+.+..+|.
T Consensus 15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G--~~V~LlEk~d~~~Gt 56 (561)
T 3da1_A 15 SEKQLDLLVIGGGITGAGIALDAQVRG--IQTGLVEMNDFASGT 56 (561)
T ss_dssp TTSCEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSTTCSG
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCCc
Confidence 345689999999999999999999999 999999999765543
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=62.64 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ..+ ..++.+..+++++.++.+..
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~~~---~~~l~~~~gv~i~~~~~v~~ 213 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTKFA--DEVTVIHRRDTLR--------AN----KVA---QARAFANPKMKFIWDTAVEE 213 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeCCCcCC--------cc----hHH---HHHHHhcCCceEecCCceEE
Confidence 4589999999999999999999998 9999999876531 11 122 22334456899998876522
Q ss_pred --------EEEec---ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 214 i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 247 (325)
T 2q7v_A 214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGH 247 (325)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EccCCcEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence 23332 23 2469999999997
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.001 Score=66.75 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=28.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+.+|..|++ .+. +|+|+.+...
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~--------------------~G~-~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGK--------------------RGR-RVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 3579999999999999999986 443 6888887754
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00084 Score=65.77 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ......+.+..++.+++++.++.+..
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~~~~l~~~~~~~gv~i~~~~~v~~ 227 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNA--ASVTLVHRGHEFQ--------GH----GKTAHEVERARANGTIDVYLETEVAS 227 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCS--------SC----SHHHHSSHHHHHHTSEEEESSEEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCCCC--------CC----HHHHHHHHHHhhcCceEEEcCcCHHH
Confidence 3579999999999999999999998 9999999876532 11 12334455556667899999866521
Q ss_pred ---------EEEec--ce---eeccCEEEEccCCC
Q 011535 98 ---------SVSLS--EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 98 ---------~~~~~--~~---~~~yd~vvlAtG~~ 118 (483)
.+.+. ++ ...+|.||+|+|..
T Consensus 228 i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~ 262 (360)
T 3ab1_A 228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262 (360)
T ss_dssp EEEETTEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred hccCCCceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence 23332 33 34699999999973
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=61.87 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhc-CCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. .+ . .+.+.+.. .+++++.++.+.
T Consensus 143 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~----~~~~~l~~~~gv~v~~~~~v~ 204 (310)
T 1fl2_A 143 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD----Q----VLQDKLRSLKNVDIILNAQTT 204 (310)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC--------SC----H----HHHHHHHTCTTEEEESSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CEEEEEEeCcccC--------cc----H----HHHHHHhhCCCeEEecCCceE
Confidence 4689999999999999999999998 9999999887541 11 1 22333444 689999887652
Q ss_pred e---------EEEecc---e---eeccCEEEEccCC
Q 011535 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.||+|+|.
T Consensus 205 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 205 EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp EEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 1 133322 2 2469999999997
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=73.23 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~ 61 (483)
..++|+|||||++|+++|..|.+.+ . +|+|+|+.+.+||.+.
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~ 45 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH 45 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCcee
Confidence 3579999999999999999999998 8 8999999999888654
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=62.43 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ..+ ..+.++..+++++.++.+..
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~---~~~~~~~~gv~i~~~~~v~~ 220 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFR--------AS----KIM---QQRALSNPKIDVIWNSSVVE 220 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred CCCeEEEECCChHHHHHHHHHHhcC--CeEEEEecCCcCC--------cc----HHH---HHHHHhCCCeeEecCCceEE
Confidence 4689999999999999999999998 9999999887531 11 111 22445667999998876521
Q ss_pred -----------EEEec---ce---eeccCEEEEccCC
Q 011535 98 -----------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 -----------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 257 (333)
T 1vdc_A 221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH 257 (333)
T ss_dssp EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence 13332 12 2469999999997
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.002 Score=61.50 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. . ...+ ...+.+..+++++.+..+..
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~---~~~l~~~~gv~v~~~~~v~~ 204 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANIC--KKVYLIHRRDGFR--------C----APIT---LEHAKNNDKIEFLTPYVVEE 204 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTS--SEEEEECSSSSCC--------S----CHHH---HHHHHTCTTEEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeeCCccC--------C----CHHH---HHHHhhCCCeEEEeCCEEEE
Confidence 4589999999999999999999998 9999999876541 1 1122 22233456899998866521
Q ss_pred ---------EEEec---ce---eeccCEEEEccCC
Q 011535 98 ---------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 205 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 239 (311)
T 2q0l_A 205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY 239 (311)
T ss_dssp EEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EECCCCcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence 13333 23 2469999999997
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00072 Score=68.76 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||..|+.+|..|.+..+..+|+++++.+.+
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~ 264 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 468999999999999999999999444999999998753
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=68.11 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=64.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~------------~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.+++||||||.|+.+|..|++.. .+.+|+|+|..+.+. |.+ .+++.....+.+++.||
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il--------~~~--~~~~~~~~~~~L~~~GV 287 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL--------NMF--EKKLSSYAQSHLENTSI 287 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHTTC
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc--------cCC--CHHHHHHHHHHHHhcce
Confidence 57999999999999999887532 137899999987642 332 34677778888888999
Q ss_pred EEEeCeEEce----EE----Eecce-----eeccCEEEEccCC
Q 011535 88 SFFGNVTLGS----SV----SLSEL-----RQLYHVVVLAYGA 117 (483)
Q Consensus 88 ~~~~~~~v~~----~~----~~~~~-----~~~yd~vvlAtG~ 117 (483)
+++.++.+.. .+ ...++ ...+|.||.|+|.
T Consensus 288 ~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 9999987632 11 12222 2469999999997
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=74.88 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
...+|+|||||+||+++|..|++ + .+|+|+|+.+..+
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~ 43 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTE 43 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC
T ss_pred CCCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCC
Confidence 35799999999999999999999 8 9999999997654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0021 Score=61.25 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ..+. +.+.++..|++++.++.+..
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~----~~~~---~~~~~~~~gv~~~~~~~v~~ 208 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLANIC--SKIYLIHRRDEFR--------A----APST---VEKVKKNEKIELITSASVDE 208 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHHTTS--SEEEEECSSSSCB--------S----CHHH---HHHHHHCTTEEEECSCEEEE
T ss_pred CcCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCCCCC--------C----CHHH---HHHHHhcCCeEEEeCcEEEE
Confidence 4689999999999999999999998 9999999886531 1 1122 33445677999998876532
Q ss_pred ---------EEEec--ce---eeccCEEEEccCC
Q 011535 98 ---------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 209 i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~ 242 (315)
T 3r9u_A 209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL 242 (315)
T ss_dssp EEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred EEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence 13332 33 3469999999997
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00025 Score=73.31 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHh---cCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~---~~~~~~v~lie~~~~ 55 (483)
.++|+|||||++|+++|..|++ .+ ++|+|||+.+.
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G--~~V~lvE~~~~ 39 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDR--IDVTLVESGNV 39 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGG--SEEEEEEC---
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCC--CEEEEEecCCC
Confidence 3699999999999999999999 88 99999999764
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=77.54 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHh-----cCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-----~~~~~~v~lie~~~~ 55 (483)
..+|+||||||+||++|..|++ .| ++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCC
Confidence 4689999999999999999999 88 99999998754
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00029 Score=76.22 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
..++|+|||||++|+++|..|++.| .+|+|+|+.+.+||-
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGGR 374 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceece
Confidence 4579999999999999999999999 999999999888873
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=72.57 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..+|+|||||++|+++|..|+++| ++|+|+|+.+..+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G--~~V~llE~~~~~~ 39 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRG--LSVLMLEAQDLAC 39 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 469999999999999999999999 9999999986443
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=66.99 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=30.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
|+|||||+|..|+.+|..|.+ ...--+|+||.+++..
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~-------------------~~~~~~VtlI~~~~~~ 39 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRN-------------------LMPDLKITLISDRPYF 39 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-------------------HCTTCEEEEECSSSEE
T ss_pred CcEEEECCCHHHHHHHHHHhc-------------------cCcCCeEEEEcCCCCC
Confidence 689999999999999999975 1223589999988643
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=71.35 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
+|+|+|||+|+.|+.+|..|.+ ....-+|+||.++...
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~-------------------~~~~~~Vtlie~~~~~ 39 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKL-------------------ADPSIEVTLIEPNETY 39 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-------------------HCTTSEEEEECSCSSE
T ss_pred cCEEEEECCcHHHHHHHHHHHh-------------------cCcCCeEEEEeCCCCC
Confidence 7899999999999999999875 1223489999987653
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=75.37 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ 56 (483)
..+|+||||||+||++|..|++ .| ++|+|||+.+.+
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~ 68 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGP 68 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence 4689999999999999999999 88 999999998654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0025 Score=60.97 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. .. .+.++.+..|++++.+..+..
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~~----~~---~~~~~~~~~gv~~~~~~~v~~ 215 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYS--TKVYLIHRRDTFK--------AQ----PI---YVETVKKKPNVEFVLNSVVKE 215 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHS--SEEEEECSSSSCC--------SC----HH---HHHHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEeCCCCC--------cC----HH---HHHHHHhCCCcEEEeCCEEEE
Confidence 4689999999999999999999998 9999999886542 11 11 234445556999999876532
Q ss_pred --------EEEecc---e---eeccCEEEEccCC
Q 011535 98 --------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 216 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 249 (323)
T 3f8d_A 216 IKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF 249 (323)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EeccCceeEEEEEECCCCceEEEEcCEEEEEECC
Confidence 133332 3 2469999999997
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00094 Score=64.33 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=66.9
Q ss_pred ceEEEeecCCcceeecccCC--C-C--ceEEEEEeeeeeeCCCCCceeeccCCceEEEec---------------CeEEE
Q 011535 281 RELHFVFFRKPDSFLESNER--S-G--HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC---------------GMVLK 340 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~--~-g--~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~---------------D~vi~ 340 (483)
.+++++....+.++. .+. + + +|.++.........+ |.. ....+..++.| +.||.
T Consensus 160 ~GV~i~~~~~V~~Ll--~~~~~~~g~~rV~GVvv~~~~v~~~--g~~--~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ 233 (326)
T 2gjc_A 160 PNVKLFNATCVEDLV--TRPPTEKGEVTVAGVVTNWTLVTQA--HGT--QCCMDPNVIELAGYKNDGTRDLSQKHGVILS 233 (326)
T ss_dssp TTEEEETTEEEEEEE--ECCCC-----CEEEEEEEEHHHHTC-------CCCCCCEEEEESCCCSSSCCCSSTTCCEEEE
T ss_pred cCcEEEecceeeeee--ecccccCCCcEEEEEEecceeeccc--ccc--eeccCceEEEEeeccccccccccccCCEEEE
Confidence 589999999999887 311 3 4 888887653211111 100 00123357889 99999
Q ss_pred eeecCCCCCCCCCccCCCCcccCCCCe--------------eeecCCCCCCc--ccCceeeeccCC----CCCc-c-hhH
Q 011535 341 SIGYKSVPVNGLPFDNHKGIVPNIRGR--------------VLKNISGDSSQ--VENGLYVCGWLK----RGPT-G-IIA 398 (483)
Q Consensus 341 a~G~~~~~~~~l~~~~~~g~~~~~~G~--------------v~v~~~~~~~t--~~p~vya~Gd~~----~g~~-~-~~~ 398 (483)
|||..+.- .. |....-..++..+. .+++. ... .+|++|++|... ..+. | +++
T Consensus 234 ATG~~~~~-~~--~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~r~g~~fg 307 (326)
T 2gjc_A 234 TTGHDGPF-GA--FCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIH---SGAYAGVDNMYFAGMEVAELDGLNRMGPTFG 307 (326)
T ss_dssp CCCCC--C-CS--HHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHH---CEECTTSTTEEECTHHHHHHHTCCBCCSCCH
T ss_pred CcCCCchH-HH--HHHhhccccccccccCceeccccccchhheeec---CCCccccCCEEECChHHHHhcCCCCCChhhh
Confidence 99987532 11 11110000011111 11121 113 689999999765 1222 2 344
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 011535 399 TNLYCAEETVASISEDLE 416 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~ 416 (483)
.-+-.|+.+|+.|++.|.
T Consensus 308 ~m~~sg~~~a~~~~~~~~ 325 (326)
T 2gjc_A 308 AMALSGVHAAEQILKHFA 325 (326)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhh
Confidence 446789999999998875
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0024 Score=67.25 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=62.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||+.|+.+|..|++.+ .+|+++++.. +.|.. ..++...+.+.+++.|++++.+..+..
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~---------~l~~~--d~~~~~~~~~~l~~~gv~i~~~~~v~~ 351 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASLG--GDVTVMVRSI---------LLRGF--DQQMAEKVGDYMENHGVKFAKLCVPDE 351 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC---------SSTTS--CHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEECCc---------CcCcC--CHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4578999999999999999999999 9999999862 11321 234556667777778999998853311
Q ss_pred ---------------E--EE--eccee-e--ccCEEEEccCC
Q 011535 98 ---------------S--VS--LSELR-Q--LYHVVVLAYGA 117 (483)
Q Consensus 98 ---------------~--~~--~~~~~-~--~yd~vvlAtG~ 117 (483)
. +. ..++. . .+|.||+|+|.
T Consensus 352 v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~ 393 (598)
T 2x8g_A 352 IKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393 (598)
T ss_dssp EEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCE
T ss_pred EEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCC
Confidence 1 11 12222 2 39999999997
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0019 Score=62.45 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=59.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. +.+ ..++++..+++++.+..+..
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~V~l~~~~~~~~--------~~----~~~---~~~~~~~~gV~v~~~~~v~~ 216 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFA--RSVTLVHRRDEFR--------AS----KIM---LDRARNNDKIRFLTNHTVVA 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTC--SEEEEECSSSSCS--------SC----TTH---HHHHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEcCCcCC--------cc----HHH---HHHHhccCCcEEEeCceeEE
Confidence 4689999999999999999999998 9999999886531 11 111 12334567999998876532
Q ss_pred --------EEEec---ce---eeccCEEEEccCC
Q 011535 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2a87_A 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGH 250 (335)
T ss_dssp EECSSSCCEEEEEEETTSCCEEECCSCEEECSCE
T ss_pred EecCCcEeEEEEEEcCCCceEEeecCEEEEccCC
Confidence 13332 12 3469999999997
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00037 Score=73.71 Aligned_cols=39 Identities=33% Similarity=0.406 Sum_probs=36.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
.++|+|||||+||+++|..|++.+ ++|+|||+.+..+|.
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G--~~V~liE~~~~~gg~ 84 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDSGL 84 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--CcEEEEeccCCCCCc
Confidence 468999999999999999999999 999999999887763
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0019 Score=65.84 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=60.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. |.. ...++...+.+.++ ++++.++.+.
T Consensus 170 ~~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~---v~i~~~~~v~ 235 (466)
T 3l8k_A 170 KLPQDMVIIGAGYIGLEIASIFRLMG--VQTHIIEMLDRAL--------ITL-EDQDIVNTLLSILK---LNIKFNSPVT 235 (466)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TTS-CCHHHHHHHHHHHC---CCEECSCCEE
T ss_pred hCCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCcCC--------CCC-CCHHHHHHHHhcCE---EEEEECCEEE
Confidence 34689999999999999999999999 9999999987542 221 02345555555544 7777665431
Q ss_pred e---------EEEec--ce---eeccCEEEEccCC
Q 011535 97 S---------SVSLS--EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~--~~---~~~yd~vvlAtG~ 117 (483)
. .+.+. ++ ...+|.||+|+|.
T Consensus 236 ~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~ 270 (466)
T 3l8k_A 236 EVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR 270 (466)
T ss_dssp EEEEEETTEEEEEECCTTSCCEEEEESCEEECCCE
T ss_pred EEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCC
Confidence 1 13333 22 3468999999997
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0026 Score=66.03 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|..|+.+|..|++.+ .+|++|++.+.
T Consensus 176 ~~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~ 212 (540)
T 3gwf_A 176 LAGRRVGVIGTGSTGQQVITSLAPEV--EHLTVFVRTPQ 212 (540)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHTTTC--SEEEEEESSCC
T ss_pred cccceEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence 45789999999999999999999998 99999999876
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0021 Score=61.69 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=58.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. +. +.+.+...|++++.++.+..
T Consensus 154 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~i~~~~~~~--------~~----~~----l~~~l~~~gv~i~~~~~v~~ 215 (319)
T 3cty_A 154 KGKRVVTIGGGNSGAIAAISMSEYV--KNVTIIEYMPKYM--------CE----NA----YVQEIKKRNIPYIMNAQVTE 215 (319)
T ss_dssp BTSEEEEECCSHHHHHHHHHHTTTB--SEEEEECSSSSCC--------SC----HH----HHHHHHHTTCCEECSEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhC--CcEEEEEcCCccC--------CC----HH----HHHHHhcCCcEEEcCCeEEE
Confidence 3589999999999999999999998 9999999876531 11 12 22333456899988866521
Q ss_pred ---------EEEec---ce---eeccCEEEEccCC
Q 011535 98 ---------SVSLS---EL---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~---~~---~~~yd~vvlAtG~ 117 (483)
.+.+. ++ ...+|.||+|+|.
T Consensus 216 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (319)
T 3cty_A 216 IVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL 250 (319)
T ss_dssp EEESSSSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred EecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence 13332 23 2469999999997
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=74.10 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=34.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...+|+|||||.+|+++|+.|+++| .+|+|||+.+..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG--~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASG--IKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 4579999999999999999999999 99999999865443
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00035 Score=71.03 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
...+|+|||+|.+|+.+|..|++.| .+|+++|+++.+||..
T Consensus 19 ~~~dv~iiG~G~~g~~~a~~l~~~g--~~v~~~e~~~~~Gg~~ 59 (475)
T 3p1w_A 19 EHYDVIILGTGLKECILSGLLSHYG--KKILVLDRNPYYGGET 59 (475)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeccCCCCCCc
Confidence 3579999999999999999999999 9999999999988864
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0014 Score=63.55 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=67.9
Q ss_pred ceEEEeecCCcceeecccCCC----------------C--ceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEee
Q 011535 281 RELHFVFFRKPDSFLESNERS----------------G--HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (483)
Q Consensus 281 ~~i~~~~~~~~~~v~~~~~~~----------------g--~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~ 342 (483)
.++++++++.+.++. .+++ + ++.++.......... +.. ....+..+|.++.||.||
T Consensus 174 ~gV~i~~~~~V~dLi--~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~--g~~--~~~~d~~~i~Ak~VV~AT 247 (344)
T 3jsk_A 174 PNVKLFNATTVEDLI--TRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMH--HDD--QSAMDPNTINAPVIISTT 247 (344)
T ss_dssp TTEEEEETEEEEEEE--EEEC----------------CCEEEEEEEEEEHHHHTT--SSS--SSCCBCEEEECSEEEECC
T ss_pred CCCEEEeCCEEEEEE--ecCCcccccccccccccccCCCceEeEEEeeeeeeecc--CCc--ccccCceEEEcCEEEECC
Confidence 589999999888886 3111 2 666665543211111 100 001234689999999999
Q ss_pred ecCCCCCCCC--CccCCCCcccCCCCe----------eeecCCCCCCcccCceeeeccCCC---C-C-cc-hhHhhHHHH
Q 011535 343 GYKSVPVNGL--PFDNHKGIVPNIRGR----------VLKNISGDSSQVENGLYVCGWLKR---G-P-TG-IIATNLYCA 404 (483)
Q Consensus 343 G~~~~~~~~l--~~~~~~g~~~~~~G~----------v~v~~~~~~~t~~p~vya~Gd~~~---g-~-~~-~~~~a~~~g 404 (483)
|....- -.+ ......++...-.|. .+++. .+.-+||+|++|-.++ | | .| +++.=+..|
T Consensus 248 G~~s~v-~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~---t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg 323 (344)
T 3jsk_A 248 GHDGPF-GAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNN---TREIVPGLIVGGMELSEIDGANRMGPTFGAMALSG 323 (344)
T ss_dssp CSSSSS-SCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHT---CEEEETTEEECGGGHHHHHTCEECCSCCHHHHHHH
T ss_pred CCCchh-hHHHHHHHhhcCcccccCCCcccccccchhhhccc---CceEcCCEEEechhhHhhcCCCCCCcccceeeecC
Confidence 977531 100 000111211000111 11121 2245799999997652 1 1 12 333346789
Q ss_pred HHHHHHHHHHHhc
Q 011535 405 EETVASISEDLEQ 417 (483)
Q Consensus 405 ~~~a~~I~~~l~~ 417 (483)
+.+|+.|++.|..
T Consensus 324 ~~~a~~~~~~~~~ 336 (344)
T 3jsk_A 324 VKAAHEAIRVFDL 336 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988864
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00036 Score=73.37 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||+||++||..|++.+ .+|+|+|+.+..
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence 468999999999999999999999 999999998643
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=64.60 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=77.0
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc------CCHHHHHHHhcCC---
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA------CTAKELREILGIK--- 231 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~------f~~~el~~~~~~~--- 231 (483)
.|+|||+|++|+-+|..|++ .|. +|+|+.|++....+ ++..-++++.-..
T Consensus 6 DViIVGaGpaGl~~A~~La~--------------------~G~-~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~ 64 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAK--------------------YGL-KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRS 64 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTT
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhh
Confidence 59999999999999999987 554 69999987543221 2233344432111
Q ss_pred CeeEEecccccc----------CCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCC
Q 011535 232 NLYVHIREDDLI----------KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS 301 (483)
Q Consensus 232 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 301 (483)
.+...+....+. ..+.........-.+..+.+.|.+.+. +.|+.+++++.+..+. . ++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~---------~~G~~~~~~~~v~~~~--~-~~ 132 (397)
T 3oz2_A 65 FIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA---------KAGADVWVKSPALGVI--K-EN 132 (397)
T ss_dssp TEEEEESEEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHH---------HHTCEEESSCCEEEEE--E-ET
T ss_pred hhhcccceEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHH---------hcCcEEeeeeeeeeee--e-cc
Confidence 111111100000 000000000000112334455555544 5689999999998887 3 46
Q ss_pred CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 302 GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 302 g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.+..+.... +++..++.+|+||-|.|...
T Consensus 133 ~~~~~v~~~~---------------~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 133 GKVAGAKIRH---------------NNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp TEEEEEEEEE---------------TTEEEEEEEEEEEECCCTTC
T ss_pred ceeeeeeecc---------------cccceEEEEeEEEeCCcccc
Confidence 6665554332 45556899999999999754
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00039 Score=73.28 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||+||+++|..|++.+++.+|+|||+.+.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 3689999999999999999999887789999999854
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.002 Score=65.24 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=33.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . +++.+..|++. +| +++.+|.||+|+|..+
T Consensus 146 ~~GV~i~~~~~V~~i~--~-~~~~v~~V~~~----------------~G--~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 146 DLGVKIRTNTPVETIE--Y-ENGQTKAVILQ----------------TG--EVLETNHVVIAVGGKS 191 (447)
T ss_dssp HTTCEEECSCCEEEEE--E-ETTEEEEEEET----------------TC--CEEECSCEEECCCCSS
T ss_pred HCCCEEEeCcEEEEEE--e-cCCcEEEEEEC----------------CC--CEEECCEEEECCCCCc
Confidence 5689999999999987 3 35554444321 22 2699999999999876
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00045 Score=72.92 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||+|||+||..|++.| .+|+|+|+.+.
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 469999999999999999999999 99999999854
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0019 Score=65.54 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=77.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccc-------cCCHHHHHHHhcCCC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA-------ACTAKELREILGIKN 232 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~-------~f~~~el~~~~~~~~ 232 (483)
-+|+|||+|.+|+-+|..|++ .|. +|+|+.++..... .++...++++.....
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~--------------------~G~-~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~ 65 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSR--------------------RGL-KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYP 65 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSS--------------------SSC-CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCCCCCCcccccccccHHHHHHhcCCCC
Confidence 369999999999999999986 454 6999998764211 112344444321110
Q ss_pred ----eeEEeccccccCCCCcH-----HHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCc
Q 011535 233 ----LYVHIREDDLIKSPTDE-----EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGH 303 (483)
Q Consensus 233 ----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~ 303 (483)
....+....+. .+... ......-.+..+.+.|.+.+. +.|+++++++.++++. . +++.
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~---------~~gv~i~~~~~v~~i~--~-~~~~ 132 (453)
T 3atr_A 66 KGEELENKINGIKLY-SPDMQTVWTVNGEGFELNAPLYNQRVLKEAQ---------DRGVEIWDLTTAMKPI--F-EDGY 132 (453)
T ss_dssp CGGGEEEEEEEEEEE-CTTSSCEEEEEEEEEEECHHHHHHHHHHHHH---------HTTCEEESSEEEEEEE--E-ETTE
T ss_pred chHHHHhhhcceEEE-CCCCceEEeECCCcEEEcHHHHHHHHHHHHH---------HcCCEEEeCcEEEEEE--E-ECCE
Confidence 11111000000 00000 000000112334455555543 4689999999999887 3 3566
Q ss_pred eEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 304 v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.+|++... .+|+..++.+|+||.|+|..+
T Consensus 133 v~gv~~~~~-------------~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 133 VKGAVLFNR-------------RTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp EEEEEEEET-------------TTTEEEEEECSEEEECCGGGC
T ss_pred EEEEEEEEc-------------CCCceEEEEcCEEEECcCCch
Confidence 655655420 023445799999999999765
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0024 Score=64.65 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=52.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE-E
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT-L 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~-v 95 (483)
..++|+|||+|++|+.+|..|++.+ .+ |+++++.+.+ +...++.+..... +
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~--~~~V~l~~r~~~~-------------------------l~~~~i~~~~~v~~~ 263 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLGGGD-------------------------IQNESLQQVPEITKF 263 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTTCCS-------------------------CBCSSEEEECCEEEE
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHh--CCcEEEEeCCCCc-------------------------CCCCCeEEecCeEEE
Confidence 5689999999999999999999998 88 9999987654 1122343322111 1
Q ss_pred ---ceEEEecceee--ccCEEEEccCCC
Q 011535 96 ---GSSVSLSELRQ--LYHVVVLAYGAE 118 (483)
Q Consensus 96 ---~~~~~~~~~~~--~yd~vvlAtG~~ 118 (483)
+..+.+.++.. .+|.||+|||..
T Consensus 264 ~~~~~~v~~~dG~~~~~~D~vi~atG~~ 291 (447)
T 2gv8_A 264 DPTTREIYLKGGKVLSNIDRVIYCTGYL 291 (447)
T ss_dssp ETTTTEEEETTTEEECCCSEEEECCCBC
T ss_pred ecCCCEEEECCCCEeccCCEEEECCCCC
Confidence 12345555543 699999999973
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0018 Score=64.78 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=29.0
Q ss_pred CceeeeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 381 NGLYVCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 381 p~vya~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
++++.+||++.. ..|+. .|+.+|..+|+.|.+.+.++
T Consensus 288 ~~v~lvGDAa~~~~P~~G~G~~-~A~~~a~~la~~l~~~~~~~ 329 (421)
T 3nix_A 288 DGFVLTGNATEFLDPIFSSGAT-FAMESGSKGGKLAVQFLKGE 329 (421)
T ss_dssp TTEEECGGGTCBCCSTTCCHHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEecccccccCCcccccHH-HHHHHHHHHHHHHHHHhcCC
Confidence 679999998752 24555 78999999999998887654
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0017 Score=63.02 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+.+|..|++ .+. +|+++.+++.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~--------------------~g~-~v~vie~~~~ 37 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRR--------------------SGL-SYVILDAEAS 37 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------SSC-CEEEECCSSS
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 379999999999999999986 444 6999998864
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0028 Score=67.95 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=63.9
Q ss_pred CCCeEEEEC--ccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG--~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+||| +|+.|+.+|..|.+.+ .+|+++++.+.+..... .......+.+.+++.|++++.++.+
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g--~~Vtlv~~~~~l~~~~~---------~~~~~~~l~~~l~~~GV~i~~~~~V 590 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKG--YEVSIVTPGAQVSSWTN---------NTFEVNRIQRRLIENGVARVTDHAV 590 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTT--CEEEEEESSSSTTGGGG---------GGTCHHHHHHHHHHTTCEEEESEEE
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCC--CeeEEEecccccccccc---------cchhHHHHHHHHHHCCCEEEcCcEE
Confidence 457899999 9999999999999999 99999998876432211 0112344566667789999999776
Q ss_pred ce----EEEec-----ce-eeccCEEEEccCC
Q 011535 96 GS----SVSLS-----EL-RQLYHVVVLAYGA 117 (483)
Q Consensus 96 ~~----~~~~~-----~~-~~~yd~vvlAtG~ 117 (483)
.. .+.+. +. ...+|.||+|+|.
T Consensus 591 ~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~ 622 (690)
T 3k30_A 591 VAVGAGGVTVRDTYASIERELECDAVVMVTAR 622 (690)
T ss_dssp EEEETTEEEEEETTTCCEEEEECSEEEEESCE
T ss_pred EEEECCeEEEEEccCCeEEEEECCEEEECCCC
Confidence 32 12211 22 2469999999997
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0027 Score=64.70 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE-E-
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT-L- 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~-v- 95 (483)
..++|+|||+|++|+.+|..|++.+ .+|+++++.+.+.+.. . | .+++++.... +
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g--~~V~li~~~~~~~~~~---~-~------------------~~V~~~~~V~~i~ 251 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYG--AKKLISCYRTAPMGYK---W-P------------------ENWDERPNLVRVD 251 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTT--CSEEEEECSSCCCCCC---C-C------------------TTEEECSCEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhC--CeEEEEEECCCCCCCC---C-C------------------CceEEcCCeEEEe
Confidence 4689999999999999999999999 9999999887642210 0 1 2444432111 1
Q ss_pred ceEEEeccee-eccCEEEEccCCC
Q 011535 96 GSSVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 96 ~~~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
+..+.+.++. ..+|.||+|||..
T Consensus 252 ~~~V~~~dG~~i~~D~Vi~atG~~ 275 (464)
T 2xve_A 252 TENAYFADGSSEKVDAIILCTGYI 275 (464)
T ss_dssp SSEEEETTSCEEECSEEEECCCBC
T ss_pred CCEEEECCCCEEeCCEEEECCCCC
Confidence 2234455544 4699999999973
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0006 Score=68.93 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-++|+|||+|..|+.+|..|.+ .+ ....+|+||.+++.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~----------------~~--~~g~~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKE----------------AL--GSGHEVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHH----------------HH--GGGSEEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhc----------------cC--CCcCEEEEEeCCCC
Confidence 3689999999999999999974 01 12347999998874
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0067 Score=63.61 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEE
Q 011535 260 RVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVL 339 (483)
Q Consensus 260 r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi 339 (483)
.+.+.|.+.+. +.|+.+++++.+.++. . +++.+..|++.. +|+..++.||+||
T Consensus 129 ~l~~~L~~~a~---------~~Gv~i~~g~~V~~v~--~-~~g~~~~V~~~~---------------~G~~~~i~AdlVV 181 (591)
T 3i3l_A 129 EFDKLLLDEAR---------SRGITVHEETPVTDVD--L-SDPDRVVLTVRR---------------GGESVTVESDFVI 181 (591)
T ss_dssp HHHHHHHHHHH---------HTTCEEETTCCEEEEE--C-CSTTCEEEEEEE---------------TTEEEEEEESEEE
T ss_pred HHHHHHHHHHH---------hCCCEEEeCCEEEEEE--E-cCCCEEEEEEec---------------CCceEEEEcCEEE
Confidence 34455555544 5689999999999987 3 245555665542 2444589999999
Q ss_pred EeeecCC
Q 011535 340 KSIGYKS 346 (483)
Q Consensus 340 ~a~G~~~ 346 (483)
.|+|...
T Consensus 182 ~AdG~~S 188 (591)
T 3i3l_A 182 DAGGSGG 188 (591)
T ss_dssp ECCGGGC
T ss_pred ECCCCcc
Confidence 9999875
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00059 Score=69.13 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...+|+|||||++|+++|+.|+++++ .+|+|||+.
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~-~~V~vlE~~ 56 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSG-GSVLVVDAG 56 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEccC
Confidence 35799999999999999999999863 699999993
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=72.79 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..+|+|||||.||++||+.|++.| .+|+|+|+.+..
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 468999999999999999999999 999999998643
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0069 Score=62.94 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|+.|+.+|..|++.+ .+|++|++.+.
T Consensus 183 ~~~krV~VIG~G~tgve~a~~la~~~--~~Vtv~~r~~~ 219 (545)
T 3uox_A 183 FTGKRVGVIGTGATGVQIIPIAAETA--KELYVFQRTPN 219 (545)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHTTTB--SEEEEEESSCC
T ss_pred cCCCeEEEECCCccHHHHHHHHHhhC--CEEEEEEcCCC
Confidence 35689999999999999999999998 99999999875
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0033 Score=62.65 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.6
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+.+|..|++ .+. +|+|+.+...
T Consensus 6 dViIIGgG~aGl~aA~~la~--------------------~G~-~V~vlEk~~~ 38 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAK--------------------LGK-SVTVFDNGKK 38 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 69999999999999999986 444 6888887753
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0036 Score=60.13 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ... .+.++..|++++.+..+..
T Consensus 153 ~~~~v~vvG~g~~~~e~a~~l~~~~--~~v~~~~~~~~~~--------~~----~~~----~~~l~~~gv~~~~~~~v~~ 214 (332)
T 3lzw_A 153 AGRRVAILGGGDSAVDWALMLEPIA--KEVSIIHRRDKFR--------AH----EHS----VENLHASKVNVLTPFVPAE 214 (332)
T ss_dssp BTCEEEEECSSHHHHHHHHHHTTTB--SEEEEECSSSSCS--------SC----HHH----HHHHHHSSCEEETTEEEEE
T ss_pred CCCEEEEECCCHhHHHHHHHHHhhC--CeEEEEEecCcCC--------cc----HHH----HHHHhcCCeEEEeCceeeE
Confidence 3689999999999999999999998 9999999876531 11 111 1224567899998876632
Q ss_pred --------EEEecc------eeeccCEEEEccCC
Q 011535 98 --------SVSLSE------LRQLYHVVVLAYGA 117 (483)
Q Consensus 98 --------~~~~~~------~~~~yd~vvlAtG~ 117 (483)
.+.+.+ ....+|.||+|+|.
T Consensus 215 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 248 (332)
T 3lzw_A 215 LIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGF 248 (332)
T ss_dssp EECSSSCCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred EecCCceEEEEEEecCCCceEEEECCEEEEeecc
Confidence 133333 12469999999997
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.006 Score=63.47 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|+.|+.+|..|++.+ .+|++|++.+.
T Consensus 189 ~~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~ 225 (549)
T 4ap3_A 189 FTGKRVGVIGTGSSGIQSIPIIAEQA--EQLFVFQRSAN 225 (549)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSCC
T ss_pred cCCCEEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence 35789999999999999999999998 99999999875
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0021 Score=64.16 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
++|+|||+|.+|+.+|..|.+ .+ ....+|+|+.+++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~----------------~~--~~g~~V~vie~~~~ 38 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKR----------------LV--GSKADVKVINKSRF 38 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHH----------------HH--GGGSEEEEEESSSE
T ss_pred CeEEEECCCHHHHHHHHHHHh----------------hC--CCCCeEEEEeCCCC
Confidence 579999999999999999874 00 02358999998864
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00097 Score=70.88 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=35.7
Q ss_pred CCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 376 SSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
++|++||+||+|||+. +..|....+..+|..++.+++.++...
T Consensus 448 ~~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~ 491 (662)
T 3gyx_A 448 RMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH 491 (662)
T ss_dssp TBCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence 6799999999999974 556655578889999999999998764
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0069 Score=62.60 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=59.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhc-CCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~-~~v~~~~~~~v~ 96 (483)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. ++ ..+.+.+.. .|++++.+..+.
T Consensus 354 ~~k~V~ViGgG~~g~E~A~~L~~~g--~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gV~v~~~~~v~ 415 (521)
T 1hyu_A 354 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD--------QVLQDKVRSLKNVDIILNAQTT 415 (521)
T ss_dssp BTSEEEEECCSHHHHHHHHHHHHHB--SEEEEECSSSSCC--------SC--------HHHHHHHTTCTTEEEECSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCcccC--------cC--------HHHHHHHhcCCCcEEEeCCEEE
Confidence 4689999999999999999999998 9999999877532 11 123344444 589999887652
Q ss_pred e---------EEEecc---e---eeccCEEEEccCC
Q 011535 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~---------~~~~~~---~---~~~yd~vvlAtG~ 117 (483)
. .+.+.+ + ...+|.|++|+|.
T Consensus 416 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 451 (521)
T 1hyu_A 416 EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL 451 (521)
T ss_dssp EEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence 1 122221 2 2459999999997
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00067 Score=72.21 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCC------CCeEEEEecCC-CC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ------EAQVDIIDRLP-TP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~------~~~v~lie~~~-~~ 56 (483)
..++|+|||||++||+||..|.+.+. .++|+|+|+.+ .+
T Consensus 55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 35789999999999999999998762 27999999998 77
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0051 Score=61.06 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|++ .+. +|+|+.++..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~--------------------~G~-~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGR--------------------QGH-RVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CCC-cEEEEeCCCC
Confidence 479999999999999999986 454 6899988753
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=70.23 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCeEEEECccHHHHHHHHHHH---h-cCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTL---K-AHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~---~-~~~~~~v~lie~~~~ 55 (483)
..+|+|||||+|||+||..|+ + .+ .+|+|+|+.+.
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G--~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCC--CeEEEEeCcCC
Confidence 479999999999999999999 5 78 99999999864
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0088 Score=56.95 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G--~~Vt~v~~~~~ 186 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYG--SKVIILHRRDA 186 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHhC--Ceeeeeccccc
Confidence 4689999999999999999999999 99999997653
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.014 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+
T Consensus 144 ~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 144 KNKRLFVIGGGDSAVEEGTFLTKFA--DKVTIVHRRDEL 180 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeccccc
Confidence 3579999999999999999999999 999999987653
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.01 Score=61.98 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=37.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.++++. .+++++|.+|.+.. .+|+..++.+|.||+|+|...
T Consensus 267 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~--------------~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 267 KRNIDLRMNTRGIEVL--KDDKGTVKGILVKG--------------MYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HTTCEEESSEEEEEEE--ECTTSCEEEEEEEE--------------TTTEEEEEECSEEEECCCCCT
T ss_pred hcCCEEEeCCEeeEeE--EcCCCeEEEEEEEe--------------CCCcEEEEECCeEEEeCCCcc
Confidence 5689999999999997 41237887776653 134445799999999999754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0033 Score=59.29 Aligned_cols=79 Identities=8% Similarity=-0.019 Sum_probs=56.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc-
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG- 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~- 96 (483)
..++|+|||+|+.|+.+|..|.+.+ +|+++++.+.. + . ..+.+.++..|++++. ..+.
T Consensus 140 ~~~~v~vvG~G~~~~e~a~~l~~~g---~v~~v~~~~~~-------~------~----~~~~~~l~~~gv~i~~-~~v~~ 198 (297)
T 3fbs_A 140 DQGKIGVIAASPMAIHHALMLPDWG---ETTFFTNGIVE-------P------D----ADQHALLAARGVRVET-TRIRE 198 (297)
T ss_dssp TTCEEEEECCSTTHHHHHHHGGGTS---EEEEECTTTCC-------C------C----HHHHHHHHHTTCEEEC-SCEEE
T ss_pred cCCEEEEEecCccHHHHHHHhhhcC---cEEEEECCCCC-------C------C----HHHHHHHHHCCcEEEc-ceeee
Confidence 4689999999999999999999884 89999876540 0 1 1244556667899885 3331
Q ss_pred ---e-EEEeccee-eccCEEEEccCC
Q 011535 97 ---S-SVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 97 ---~-~~~~~~~~-~~yd~vvlAtG~ 117 (483)
. .+.+.++. ..+|.||+|+|.
T Consensus 199 i~~~~~v~~~~g~~~~~D~vi~a~G~ 224 (297)
T 3fbs_A 199 IAGHADVVLADGRSIALAGLFTQPKL 224 (297)
T ss_dssp EETTEEEEETTSCEEEESEEEECCEE
T ss_pred eecCCeEEeCCCCEEEEEEEEEccCc
Confidence 1 34454443 469999999997
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0044 Score=61.40 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=27.9
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|.+|+-+|..|++ .|. +|+|+.++..
T Consensus 4 dV~IvGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 36 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQTP 36 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSCH
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 69999999999999999986 354 6889988763
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=62.02 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=80.0
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcC--CccEEEEEeecCcccc------cCCHHHHHHHhc--
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS--SIRKVYLVGRRGPVQA------ACTAKELREILG-- 229 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~--~~~~V~li~r~~~~~~------~f~~~el~~~~~-- 229 (483)
-+|+|||+|.+|+-+|..|++. .... + .+|.|+.+...... .+....+++++.
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~----------------~~~~~~G-~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~ 98 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQL----------------AAQHEKD-LRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDW 98 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH----------------HHHTTCC-CCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTH
T ss_pred CCEEEECcCHHHHHHHHHHHhc----------------ccccCCC-CcEEEEeCCCCCCCccccccccCHHHHHHHHHHH
Confidence 3699999999999999999860 0001 3 46999998754321 133344444421
Q ss_pred ----CCC------eeEEecccc----ccCCCC--cHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcce
Q 011535 230 ----IKN------LYVHIREDD----LIKSPT--DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (483)
Q Consensus 230 ----~~~------~~~~~~~~~----~~~~~~--~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 293 (483)
.+- -.+.+.... +...+. ........-.+..+.+.|.+.+. +.|+++++++.+.+
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~---------~~Gv~i~~g~~v~~ 169 (584)
T 2gmh_A 99 KEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE---------ALGVEVYPGYAAAE 169 (584)
T ss_dssp HHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH---------HTTCEEETTCCEEE
T ss_pred HhcCCceeeeechhheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHH---------HcCCEEEcCCEEEE
Confidence 010 012111110 000011 00000000012344455555544 45899999999999
Q ss_pred eecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 294 v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+. .++++.+.+|.+.+..+.. +|+.... ...+.++.+|.||.|.|..+
T Consensus 170 l~--~~~~g~V~gV~~~~~g~~~--~G~~~~~-~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 170 IL--FHEDGSVKGIATNDVGIQK--DGAPKTT-FERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp EE--ECTTSSEEEEEECCEEECT--TSCEEEE-EECCCEEECSEEEECCCTTC
T ss_pred EE--EcCCCCEEEEEeCCccccC--CCCcccc-cCCceEEECCEEEEeeCCCc
Confidence 87 3235677777665321110 1110000 00124799999999999864
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0066 Score=61.55 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ 56 (483)
...++|+|||||..|+.+|..+.+.+ . +|+++++.+..
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtiv~r~~~~ 300 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIRQG--ATSVKCLYRRDRK 300 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCST
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcC--CCEEEEEEeCCcc
Confidence 35689999999999999999999998 7 59999987653
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.012 Score=57.12 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . +++....|... +|+..++.||.||+|+|...
T Consensus 162 ~~Gv~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 162 SDGAQLVFHTPLIAGR--V-RPEGGFELDFG----------------GAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HTTCEEECSCCEEEEE--E-CTTSSEEEEEC----------------TTSCEEEEEEEEEECCGGGH
T ss_pred HCCCEEECCCEEEEEE--E-cCCceEEEEEC----------------CCceeEEEeCEEEECCCcch
Confidence 5689999999999987 3 23321223221 34445899999999999765
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0091 Score=58.79 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=29.9
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..+|+|||+|.+|+.+|..|++ .+ .+|+|+.++...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~~ 46 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQ--------------------NG-WDVRLHEKSSEL 46 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEecCCCC
Confidence 4689999999999999999986 45 479999987543
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0069 Score=60.69 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~ 22 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTN 22 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHH
T ss_pred CEEEECCcHHHHHHHHHHHH
Confidence 69999999999999999986
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=62.71 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCC-----------------------------------CeEEEEecCCCCCCcee
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQE-----------------------------------AQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~-----------------------------------~~v~lie~~~~~ggl~~ 61 (483)
...++|+|||||+.|+.+|..|++.+.. .+|+++++.+...+
T Consensus 492 ~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~--- 568 (671)
T 1ps9_A 492 PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPG--- 568 (671)
T ss_dssp CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTT---
T ss_pred CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhc---
Confidence 3468999999999999999999987611 24455554432211
Q ss_pred cccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce----EEEe-cce---eeccCEEEEccCC
Q 011535 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS----SVSL-SEL---RQLYHVVVLAYGA 117 (483)
Q Consensus 62 ~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~----~~~~-~~~---~~~yd~vvlAtG~ 117 (483)
... .......+.+.++..|++++.++.+.. .+.+ .++ ...+|.||+|+|.
T Consensus 569 ----~~l--~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~ 626 (671)
T 1ps9_A 569 ----QGL--GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 626 (671)
T ss_dssp ----TTS--CTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred ----ccc--ccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCc
Confidence 000 011223345556677999999876532 2233 233 3469999999997
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0028 Score=65.97 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++++|||+|++|+.+|.+|++.+ .+|+|+|+.+..
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g--~~VlvlE~g~~~ 42 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGGPS 42 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCCCC
Confidence 4579999999999999999999998 999999998753
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.019 Score=56.33 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.6
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+|+|||+|.+|+-+|..|++
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~ 38 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAK 38 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 479999999999999999986
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.027 Score=58.80 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred cceEEEeecCCcceeecccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.||++++++.+.++. . ++ +++.+|.+.. .+|+..++.+|.||+|+|-.+
T Consensus 267 ~~gv~i~~~t~v~~l~--~-~~~g~v~GV~~~~--------------~~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 267 KRGTDIRLNSRVVRIL--E-DASGKVTGVLVKG--------------EYTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp HTTCEEESSEEEEEEE--E-C--CCEEEEEEEE--------------TTTEEEEEECSEEEECCCCCT
T ss_pred HcCCeEEecCEEEEEE--E-CCCCeEEEEEEEe--------------CCCcEEEEEcCEEEEeCCCCc
Confidence 5689999999999997 4 34 7888777653 134445799999999999655
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.015 Score=60.76 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=37.6
Q ss_pred cceEEEeecCCcceeecccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . ++ ++|.+|.+.. .+|+..++.+|.||+|+|-..
T Consensus 262 ~~gv~i~~~~~v~~l~--~-~~~g~v~Gv~~~~--------------~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 262 EQGIDTRLNSRVVKLV--V-NDDHSVVGAVVHG--------------KHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp HTTCCEECSEEEEEEE--E-CTTSBEEEEEEEE--------------TTTEEEEEEEEEEEECCCCCT
T ss_pred hcCCEEEeCCEEEEEE--E-CCCCcEEEEEEEe--------------CCCcEEEEEcCEEEEecCCcc
Confidence 5689999999999987 4 34 7887776643 134445799999999999654
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.023 Score=56.21 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.+++.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRD--------------------AGV-DVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 4589999999999999999986 454 7999998754
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=58.43 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=38.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecC-eEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCG-MVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D-~vi~a~G~~~ 346 (483)
+.|+++++++.+++++ .++++++.+|.+.. .++..++.+| .||+|+|--.
T Consensus 214 ~~Gv~i~~~t~v~~L~--~~~~g~v~GV~~~~---------------~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 214 KLGVRAEYDMRVQTLV--TDDTGRVVGIVAKQ---------------YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HTTCEEECSEEEEEEE--ECTTCCEEEEEEEE---------------TTEEEEEEEEEEEEECCCCCT
T ss_pred HcCCEEEecCEeEEEE--ECCCCcEEEEEEEE---------------CCcEEEEEeCCeEEEeCCChh
Confidence 5689999999999998 42368888887654 3444579996 9999999544
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.017 Score=57.95 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=34.4
Q ss_pred cceEEEeecC---CcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 280 QRELHFVFFR---KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 280 ~~~i~~~~~~---~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+.|+++++++ .+.++. . +++.+.+|+.. ++.++.||.||+|+|.-...
T Consensus 173 ~~Gv~i~~~t~~~~V~~i~--~-~~~~v~gV~t~------------------~G~~i~Ad~VV~AtG~~s~~ 223 (438)
T 3dje_A 173 RMGVKFVTGTPQGRVVTLI--F-ENNDVKGAVTA------------------DGKIWRAERTFLCAGASAGQ 223 (438)
T ss_dssp HTTCEEEESTTTTCEEEEE--E-ETTEEEEEEET------------------TTEEEECSEEEECCGGGGGG
T ss_pred hcCCEEEeCCcCceEEEEE--e-cCCeEEEEEEC------------------CCCEEECCEEEECCCCChhh
Confidence 5689999998 888887 3 35555544432 22479999999999976544
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.013 Score=57.54 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.5
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+|+|||+|.+|+-+|..|++ .+. +|+|+.+..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~--------------------~G~-~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAK--------------------RGE-EVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeCCC
Confidence 479999999999999999986 444 588888764
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0068 Score=65.34 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=48.4
Q ss_pred CCCeEEEEC--ccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG--~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++|+||| ||+.|+.+|..|++.+ .+|+|+++.+ +.... .. +. . ...+.+.+++.|++++.++.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G--~~Vtlv~~~~-l~~~~--~~-~~--~----~~~~~~~l~~~GV~i~~~~~v 594 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVH-LANYM--HF-TL--E----YPNMMRRLHELHVEELGDHFC 594 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSC-TTHHH--HH-TT--C----HHHHHHHHHHTTCEEECSEEE
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcC--CEEEEEeccc-ccccc--cc-cc--c----HHHHHHHHHhCCCEEEcCcEE
Confidence 457999999 9999999999999999 9999999887 42211 11 21 1 123445566679999998765
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.019 Score=51.99 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=51.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
-..++|+|||||..|...+..|.+.+ .+|+|+++... + .+..+....+++++...
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~----------~----------~l~~l~~~~~i~~i~~~--- 83 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVS----------A----------EINEWEAKGQLRVKRKK--- 83 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCC----------H----------HHHHHHHTTSCEEECSC---
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCC----------H----------HHHHHHHcCCcEEEECC---
Confidence 46789999999999999999999999 99999985311 1 13344445556655332
Q ss_pred eEEEecceeeccCEEEEccCC
Q 011535 97 SSVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 97 ~~~~~~~~~~~yd~vvlAtG~ 117 (483)
.... ....+|.||.|||.
T Consensus 84 --~~~~-dL~~adLVIaAT~d 101 (223)
T 3dfz_A 84 --VGEE-DLLNVFFIVVATND 101 (223)
T ss_dssp --CCGG-GSSSCSEEEECCCC
T ss_pred --CCHh-HhCCCCEEEECCCC
Confidence 1111 12369999999997
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.025 Score=59.23 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
-+|+|||+|.+|+++|..+++ .|. +|.|+.++
T Consensus 28 yDVIVIGgG~AGl~AAlalAr--------------------~G~-kVlLIEk~ 59 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAAR--------------------MGA-KTAMFVLN 59 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESC
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEEec
Confidence 479999999999999999986 454 68898876
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.029 Score=58.93 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
-+|+|||+|.+|+++|..+++ .|. +|.|+.++
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr--------------------~G~-kVlLIEk~ 60 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAAR--------------------MGQ-QTLLLTHN 60 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESC
T ss_pred CCEEEECChHHHHHHHHHHHh--------------------CCC-CEEEEeec
Confidence 479999999999999999986 454 68899876
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0068 Score=61.38 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|.|||.|.+|+++|..|.++| ++|+++|..+.. . + . ..+.++..|++++.+...
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~-------~-~------~----~~~~L~~~gi~~~~g~~~-- 65 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFD-------E-N------P----TAQSLLEEGIKVVCGSHP-- 65 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGG-------G-C------H----HHHHHHHTTCEEEESCCC--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCccc-------C-C------h----HHHHHHhCCCEEEECCCh--
Confidence 4689999999999999999999999 999999986520 0 0 1 122344568888766431
Q ss_pred EEEecceeec-cCEEEEccCCC
Q 011535 98 SVSLSELRQL-YHVVVLAYGAE 118 (483)
Q Consensus 98 ~~~~~~~~~~-yd~vvlAtG~~ 118 (483)
.+.... +|.||+++|..
T Consensus 66 ----~~~~~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 66 ----LELLDEDFCYMIKNPGIP 83 (451)
T ss_dssp ----GGGGGSCEEEEEECTTSC
T ss_pred ----HHhhcCCCCEEEECCcCC
Confidence 112234 89999999983
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0089 Score=66.50 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. + . .+.++..|++++.++.+..
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G--~~Vtvv~~~~~~~--------~------~-----~~~l~~~GV~v~~~~~v~~i 342 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATG--GVVAVIDARSSIS--------A------A-----AAQAVADGVQVISGSVVVDT 342 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGT--CCSEEEESCSSCC--------H------H-----HHHHHHTTCCEEETEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcC--CcEEEEECCCccc--------h------h-----HHHHHhCCeEEEeCCEeEEE
Confidence 479999999999999999999999 8899999887541 1 1 2345667899988875421
Q ss_pred ---------EEEecc-------e---eeccCEEEEccCC
Q 011535 98 ---------SVSLSE-------L---RQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---------~~~~~~-------~---~~~yd~vvlAtG~ 117 (483)
.+.+.+ + ...+|.||+|+|.
T Consensus 343 ~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~ 381 (965)
T 2gag_A 343 EADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF 381 (965)
T ss_dssp EECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred eccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence 233332 2 2469999999997
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.029 Score=56.83 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHH--------------------hcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTL--------------------KAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~--------------------~~~~~~-~v~lie~~~~ 55 (483)
..++|+|||+|+.|+.+|..|+ +.+ . +|+|+++.+.
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g--~~~V~lv~r~~~ 200 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR--VKTVWIVGRRGP 200 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC--CCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCC--CcEEEEEEcCCh
Confidence 4689999999999999999999 445 6 7999998764
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.029 Score=55.45 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=31.7
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+++++++.+.++. . +++.+..++.. ++ ++.+|.||+|+|...
T Consensus 186 ~~g~~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g---~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 186 EMGVDIIQNCEVTGFI--K-DGEKVTGVKTT----------------RG---TIHAGKVALAGAGHS 230 (405)
T ss_dssp HTTCEEECSCCEEEEE--E-SSSBEEEEEET----------------TC---CEEEEEEEECCGGGH
T ss_pred HCCCEEEcCCeEEEEE--E-eCCEEEEEEeC----------------Cc---eEECCEEEECCchhH
Confidence 5689999999999987 3 34544433321 22 688999999999754
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.028 Score=57.60 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~ 46 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRL--------------------GGV-DVMVLEQLPQ 46 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 4589999999999999999986 555 5889988753
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.047 Score=55.28 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc--------------------CCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA--------------------HQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~--------------------~~~~~v~lie~~~~ 55 (483)
..++|+|||+|+.|+.+|..|++. + ..+|+||++.+.
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g-~~~V~lv~r~~~ 202 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG-IQEVVIVGRRGP 202 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC-CCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCC-CcEEEEEecCCh
Confidence 468999999999999999999974 3 149999998764
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0051 Score=63.55 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+++||||||+||+.+|.+|++. ++.+|+|+|+.+.
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence 368999999999999999999973 2399999999865
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0032 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..++++|||||+||+.+|.+|++ + .+|+|+|+.+..
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~~ 60 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBCG
T ss_pred CcccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCCc
Confidence 34799999999999999999999 7 999999998764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.04 Score=61.71 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|+|||||..|+.+|..+.+.+ . +|+++++.+.. ..|.. ..++ +.++..|++|+.+..+.
T Consensus 331 ~~~~VvVIGgG~~g~e~A~~~~~~G--~~~Vtvv~r~~~~-------~~~~~--~~e~-----~~~~~~Gv~~~~~~~~~ 394 (1025)
T 1gte_A 331 IRGAVIVLGAGDTAFDCATSALRCG--ARRVFLVFRKGFV-------NIRAV--PEEV-----ELAKEEKCEFLPFLSPR 394 (1025)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCGG-------GCCSC--HHHH-----HHHHHTTCEEECSEEEE
T ss_pred cCCcEEEECCChHHHHHHHHHHHcC--CCEEEEEEecChh-------hCCCC--HHHH-----HHHHHcCCEEEeCCCce
Confidence 3569999999999999999999998 7 89999987521 11322 1222 23455688887765431
Q ss_pred e------E---EEec-------------ce---eeccCEEEEccCCC
Q 011535 97 S------S---VSLS-------------EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~------~---~~~~-------------~~---~~~yd~vvlAtG~~ 118 (483)
. . +.+. ++ ...+|.||+|+|..
T Consensus 395 ~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~ 441 (1025)
T 1gte_A 395 KVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSV 441 (1025)
T ss_dssp EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEE
T ss_pred EEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCC
Confidence 1 0 1111 11 23599999999973
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.024 Score=53.87 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=26.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.|+|||+|+.|+.+|..|++ .+ .+|+|+.+..
T Consensus 8 DVvIIGaGpAGlsAA~~lar--------------------~g-~~v~lie~~~ 39 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGR--------------------AR-KQIALFDNNT 39 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEECSC
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeCCC
Confidence 69999999999999988876 34 4699998764
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.028 Score=57.62 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|++|+-+|..|++ .|. +|+|+.|+..
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRL--------------------AGV-EVVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 34579999999999999999986 565 5889988753
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.039 Score=57.59 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=28.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|.+|+-+|..|++ .|. +|+||.|...
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~--------------------~G~-~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRA--------------------GGV-GALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEcCCCC
Confidence 479999999999999999986 555 6999998754
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.046 Score=56.88 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=38.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+.+++++.+.++. . +++++.+|++.+. .+|+..++.||.||.|+|.-.
T Consensus 182 ~~G~~i~~~~~V~~l~--~-~~g~v~gV~~~d~-------------~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 182 ARGAVALNYMKVESFI--Y-DQGKVVGVVAKDR-------------LTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HTTCEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEEEEEEEECCGGGH
T ss_pred HcCCEEEcCCEEEEEE--E-cCCeEEEEEEEEc-------------CCCceEEEECCEEEECCCcch
Confidence 6789999999999987 3 3667777766541 145556899999999999643
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0072 Score=63.14 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=33.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....+++||||||.||+.+|.+|.+. ++.+|+|+|+.+
T Consensus 16 ~~~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~ 53 (583)
T 3qvp_A 16 SGRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 53 (583)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred CCCCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence 34568999999999999999999875 349999999987
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0087 Score=61.54 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.++++|||+|++|+.+|.+|++.+ .+|+|+|+.+..
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~~ 40 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQLW 40 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence 479999999999999999999988 999999998753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.036 Score=53.39 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=51.7
Q ss_pred CCCeEEEECccHHHHH-HHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~-aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
..++|.|||.|.+|++ +|..|.++| ++|++.|..+.+ + ..+.++..|++++.+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~---------~-----------~~~~L~~~gi~v~~g~~-- 58 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYP---------P-----------MSTQLEALGIDVYEGFD-- 58 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCT---------T-----------HHHHHHHTTCEEEESCC--
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCc---------H-----------HHHHHHhCCCEEECCCC--
Confidence 4689999999999997 788889999 999999987531 1 11223445888775521
Q ss_pred eEEEeccee-eccCEEEEccCC
Q 011535 97 SSVSLSELR-QLYHVVVLAYGA 117 (483)
Q Consensus 97 ~~~~~~~~~-~~yd~vvlAtG~ 117 (483)
..... ..+|.||++.|.
T Consensus 59 ----~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 59 ----AAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp ----GGGGGSCCCSEEEECTTC
T ss_pred ----HHHcCCCCCCEEEECCCc
Confidence 12222 358999999997
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.035 Score=57.51 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|.+ .+. +|+|+.+++.
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~--------------------~G~-~v~iiE~~~~ 50 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRE--------------------LGR-SVHVIETAGD 50 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 479999999999999999986 455 7999998754
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.032 Score=57.67 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=27.1
Q ss_pred CceeeeccCCC--CC---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 381 NGLYVCGWLKR--GP---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 381 p~vya~Gd~~~--g~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.+|+.+||+++ .| .|.- .++.+|..++..|...+.+
T Consensus 301 grv~LvGDAAH~~~P~~GqG~n-~ai~DA~~La~~La~~l~g 341 (535)
T 3ihg_A 301 GRVFLAGDAAKVTPPTGGMSGN-AAVADGFDLAWKLAAVLQG 341 (535)
T ss_dssp TTEEECTTTTEECCSTTSCHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecccccCCCccCCccc-cccccHHHHHHHHHHHhcC
Confidence 67999999985 23 3444 6888898888888877654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=48.41 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....+|+|+|.|..|...|..|.+.+ ++|+++|+++
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~ 40 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSR 40 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCH
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 34578999999999999999999999 9999999863
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.017 Score=49.02 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|+|+|..|..+|..|.+.+ .+|+++|+++.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH
Confidence 35689999999999999999999998 99999998753
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0095 Score=62.21 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+++||||||.||+.+|.+|++.+ ..+|+|+|+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~-~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENP-NVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTST-TSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence 3579999999999999999999874 579999999865
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.013 Score=61.34 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~-~~~~~~v~lie~~~~~ 56 (483)
...++++|||+|++|+.+|.+|++ .+ .+|+|+|+.+..
T Consensus 22 ~~~~d~iivG~G~~g~~~a~~l~~~~~--~~v~~~e~g~~~ 60 (587)
T 1gpe_A 22 GKTYDYIIAGGGLTGLTVAAKLTENPK--IKVLVIEKGFYE 60 (587)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHTSTT--CCEEEEESSCCC
T ss_pred cccCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEecCCcc
Confidence 356899999999999999999999 56 999999998654
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.013 Score=60.37 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++++|||+|++|+.+|.+|++.+ .+|+|+|+.+.
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence 4579999999999999999999987 99999999864
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.043 Score=54.43 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
...+|+|||+|.+|+-+|..|++ .|. +|+|+.|...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~--------------------~G~-~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQ--------------------SGI-DCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 34689999999999999999986 454 6999998754
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.055 Score=59.18 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.6
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+|+|||+|.+|+-+|..|++
T Consensus 5 ~dVvIIGgGi~Gls~A~~La~ 25 (830)
T 1pj5_A 5 PRIVIIGAGIVGTNLADELVT 25 (830)
T ss_dssp CCEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 479999999999999999986
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.014 Score=60.51 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ 56 (483)
...+++|||+|++|+.+|.+|++. + .+|+|+|+.+..
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~--~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPA--VSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTT--SCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC--CCEEEEecCCcC
Confidence 458999999999999999999997 5 999999998654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.11 Score=54.57 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=32.9
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcCc
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGV 419 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~~ 419 (483)
.+||+|++|++. |..|.. .|..+|..++.|++..+.+.+
T Consensus 377 ~~~gLf~AGqi~-g~~Gy~-eA~a~G~~AG~naa~~~~~~~ 415 (641)
T 3cp8_A 377 PVENLFFAGQIN-GTSGYE-EAAAQGLMAGINAVRKILGKE 415 (641)
T ss_dssp SSBTEEECSGGG-TBCCHH-HHHHHHHHHHHHHHHHHHTCC
T ss_pred CcCCEEEEEeec-CCccHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 479999999994 566776 799999999999999988753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.023 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|..|...|..|.+.+ .+|+++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence 468999999999999999999998 999999975
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.086 Score=56.19 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.3
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+|+|||+|.+|+-+|..|++ .| .+|+|+.++.
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~--------------------~G-~~V~vlEk~~ 305 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLR--------------------RG-WQVTLYCADE 305 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeCCC
Confidence 689999999999999999986 45 4799998853
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.12 Score=53.32 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=28.3
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||||.+|+-+|..|++. + ..| .+|+|+.+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~----------------~-~~G-~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRA----------------L-QQQ-ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----------------C-CSS-CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhh----------------c-CCC-CEEEEECCCC
Confidence 35899999999999999999850 0 023 4799999864
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.028 Score=57.50 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.+|+|||+|++|+.+|..|.+ . .+|+|+.+.+..
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~--------------------~--~~V~vie~~~~~ 142 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQ--------------------Y--LTVALIEERGWL 142 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTT--------------------T--CCEEEECTTSSS
T ss_pred CCEEEECccHHHHHHHHHHHh--------------------c--CCEEEEeCCCCC
Confidence 479999999999999999986 3 689999987643
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.027 Score=47.59 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|+|+|..|...+..|.+.+ ++|+++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRG--QNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Confidence 3568999999999999999999998 999999975
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.02 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|+|+|..|...|..|.+.+ ++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence 468999999999999999999999 999999975
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.17 Score=49.20 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCeEEEEcCCchHHHHHHHHhc
Q 011535 159 TDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.++|+|||+|.+|+-+|..|++
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La~ 30 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLSA 30 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT
T ss_pred cCCEEEECCcHHHHHHHHHHhC
Confidence 4689999999999999999984
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.07 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=28.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|++ .|. +|+|+.|++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~--------------------~G~-~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK--------------------HGI-KVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHh--------------------CCC-CEEEEecCCC
Confidence 379999999999999999986 565 6999988753
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.2 Score=51.94 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.1
Q ss_pred CceeeeccCCC--CCc---chhHhhHHHHHHHHHHHHHHHhcC
Q 011535 381 NGLYVCGWLKR--GPT---GIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 381 p~vya~Gd~~~--g~~---~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.+|+.+||+++ .|. |.- .++.+|..++..|...+.+.
T Consensus 309 grv~L~GDAAH~~~P~~GqG~n-~gi~DA~~La~~La~~l~g~ 350 (549)
T 2r0c_A 309 GRVFLTGDAAHTLSPSGGFGMN-TGIGSAADLGWKLAATLRGW 350 (549)
T ss_dssp TTEEECGGGTEECCCGGGHHHH-HHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEccccccCCCccCCccc-cccHHHHHHHHHHHHHHcCC
Confidence 57999999985 233 333 67888888888888877653
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.062 Score=51.82 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=18.6
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 3 dV~IIGaG~aGl~~A~~L~~ 22 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRR 22 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHS
T ss_pred cEEEECCcHHHHHHHHHHHh
Confidence 79999999999999999974
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.011 Score=61.48 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.++++|||||.||+.+|.+|++. ++.+|+|+|+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 36899999999999999999983 34999999998654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.0097 Score=60.36 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+.++|+|+|+|-.|.+.|..|...+ ++|++||+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 4679999999999999999999998 9999999874
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.04 Score=54.72 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+|+|||+|.+|+-+|..|++
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~ 57 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQ 57 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHh
Confidence 479999999999999999986
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.16 Score=52.69 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||||.+|+-+|..|++. + ..+ .+|+||.+..
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~----------------~-~~G-~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKA----------------L-QGT-ADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----------------T-TTS-SEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhh----------------c-CCC-CcEEEEeCCC
Confidence 46899999999999999999850 0 023 4799999864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.032 Score=55.84 Aligned_cols=37 Identities=24% Similarity=0.148 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+.+.+|+|||.|+.||..|..|++.| ++|+.||-++.
T Consensus 19 ~~m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~ 55 (444)
T 3vtf_A 19 SHMASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPS 55 (444)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHH
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHH
Confidence 35679999999999999999999999 99999998754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.13 Score=54.95 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.+..
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~--------------------~G~-~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQR--------------------RGA-VVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHH--------------------CCC-cEEEEeCCC
Confidence 3589999999999999999986 454 688888853
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.087 Score=53.52 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=30.5
Q ss_pred CeeeecCCCCCCcccCceeeeccCCC-CCcc---hhHhhHHHHHHHHHHHHHHH
Q 011535 366 GRVLKNISGDSSQVENGLYVCGWLKR-GPTG---IIATNLYCAEETVASISEDL 415 (483)
Q Consensus 366 G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~---~~~~a~~~g~~~a~~I~~~l 415 (483)
|.|.+|.+ ++|++|||||+|||+. +..| ..+.+..+|...+..+..++
T Consensus 317 GGI~vd~~--~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~ 368 (472)
T 2e5v_A 317 GGIRVNIR--GESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYV 368 (472)
T ss_dssp CEEECCTT--CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTT
T ss_pred CCeEECCC--CccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHH
Confidence 55666766 7899999999999975 4321 22245566555555544444
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.096 Score=52.91 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=50.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||+|..|...+..|.+.| .+|+++++... + .+.++....+++++.+.-
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~~~----------~----------~~~~l~~~~~i~~~~~~~--- 65 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFI----------P----------QFTVWANEGMLTLVEGPF--- 65 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCC----------H----------HHHHHHTTTSCEEEESSC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCCCC----------H----------HHHHHHhcCCEEEEECCC---
Confidence 5689999999999999999999999 99999986421 1 133334444566654321
Q ss_pred EEEecceeeccCEEEEccCC
Q 011535 98 SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~ 117 (483)
...+ ...+|.||.|||.
T Consensus 66 --~~~~-l~~~~lVi~at~~ 82 (457)
T 1pjq_A 66 --DETL-LDSCWLAIAATDD 82 (457)
T ss_dssp --CGGG-GTTCSEEEECCSC
T ss_pred --Cccc-cCCccEEEEcCCC
Confidence 1111 2368999999996
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.27 Score=51.56 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=35.2
Q ss_pred cce-EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRE-LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~-i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.+ +++++++.+.++. . +++++.++...+. .+|+..++.++.||+|+|-
T Consensus 146 ~~gnv~i~~~~~v~~l~--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 146 QFPQIQRFDEHFVLDIL--V-DDGHVRGLVAMNM-------------MEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp TCTTEEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTTEEEEEECSCEEECCCC
T ss_pred hCCCcEEEeCCEEEEEE--E-eCCEEEEEEEEEc-------------CCCcEEEEEcCeEEECCCC
Confidence 456 9999999999987 4 3566666654320 1344457999999999995
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=94.19 E-value=0.17 Score=53.27 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=36.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. . +++++.++...+. .+|+...+.++.||+|+|-
T Consensus 167 ~~gv~i~~~~~v~~Li--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlATGG 215 (621)
T 2h88_A 167 RYDTSYFVEYFALDLL--M-ENGECRGVIALCI-------------EDGTIHRFRAKNTVIATGG 215 (621)
T ss_dssp TSCCEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEEEEEEEECCCC
T ss_pred hCCCEEEEceEEEEEE--E-ECCEEEEEEEEEc-------------CCCcEEEEEcCeEEECCCc
Confidence 5789999999999987 4 3677777765431 1455568999999999995
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.054 Score=44.71 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|+|+|..|..+|..|.+.+ .+|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 468999999999999999999998 899999875
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.057 Score=47.03 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~ 54 (483)
...+|+|+|+|..|..+|..|.+. + ++|+++|+++
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~ 73 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYG--KISLGIEIRE 73 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCH
Confidence 356899999999999999999998 9 9999999763
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.24 Score=51.75 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=36.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
+.|+++++++.+.++. .++++++.++.+.+. .+|+..++.++.||+|+|-
T Consensus 155 ~~gv~i~~~~~v~~L~--~~~~g~v~Gv~~~~~-------------~~g~~~~i~A~~VVlAtGg 204 (588)
T 2wdq_A 155 KNHTTIFSEWYALDLV--KNQDGAVVGCTALCI-------------ETGEVVYFKARATVLATGG 204 (588)
T ss_dssp HTTCEEEETEEEEEEE--ECTTSCEEEEEEEET-------------TTCCEEEEEEEEEEECCCC
T ss_pred hCCCEEEeCcEEEEEE--ECCCCEEEEEEEEEc-------------CCCeEEEEEcCEEEECCCC
Confidence 4589999999999997 412577777765431 1345557999999999995
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.062 Score=56.45 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=38.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
..++++|||+|..|...|..|++.| .+|.+||++++.||-+
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g--~~vl~id~~~~~gg~~ 47 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNW 47 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGG
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCCcccCcc
Confidence 3689999999999999999999999 9999999999988864
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.074 Score=42.14 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|+|+|..|..++..|.+.+ ..+|++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCC
Confidence 468999999999999999999986 3689999875
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.054 Score=48.74 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|+|..|...|..|.+.+ ++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 47999999999999999999998 9999999753
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.076 Score=50.68 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=33.6
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
......++|.|||.|.-|...|..|++.| ++|+++|+++
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~ 54 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTL 54 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSG
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 33456689999999999999999999999 9999999875
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.068 Score=49.89 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||||..|...+..|.+.| .+|+||++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence 5789999999999999999999999 9999999754
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.07 Score=53.69 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||.|.+|+++|..|.++| ++|+++|..... |.. ..++ .|+++..+...
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~---------~~~-----------~~l~-~G~~~~~g~~~-- 58 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTP---------PGL-----------DKLP-EAVERHTGSLN-- 58 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTT--CCCEEEESSSSC---------TTG-----------GGSC-TTSCEEESSCC--
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCC--CEEEEEECCCCc---------chh-----------HHhh-CCCEEEECCCc--
Confidence 4578999999999999999999999 999999987542 210 2234 56666544311
Q ss_pred EEEecceeeccCEEEEccCC
Q 011535 98 SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+.. ..+|.||+++|.
T Consensus 59 ---~~~~-~~~d~vV~s~gi 74 (439)
T 2x5o_A 59 ---DEWL-MAADLIVASPGI 74 (439)
T ss_dssp ---HHHH-HTCSEEEECTTS
T ss_pred ---HHHh-ccCCEEEeCCCC
Confidence 1111 258899999986
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.25 Score=50.41 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=33.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~ 346 (483)
+.|+.+++++.+.++. . ++.+..|++.+. .+|+..++.+|.||.|+|.-.
T Consensus 161 ~~Gv~i~~~~~V~~l~--~--~~~~~~V~~~d~-------------~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 161 RKGGEVLTRTRATSAR--R--ENGLWIVEAEDI-------------DTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HTTCEEECSEEEEEEE--E--ETTEEEEEEEET-------------TTCCEEEEEESCEEECCGGGH
T ss_pred HcCCEEEcCcEEEEEE--E--eCCEEEEEEEEC-------------CCCCEEEEECCEEEECCChhH
Confidence 5688888888888886 3 334445544320 134445799999999999754
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.06 Score=49.07 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=33.1
Q ss_pred CcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++.++||++||+..|+ ++. .|+.+|..+|..|+++|+.+
T Consensus 291 ~~~~~~v~l~GDa~~g~-gv~-~A~~sG~~aA~~I~~~L~~e 330 (336)
T 3kkj_A 291 SDADLGIYVCGDWCLSG-RVE-GAWLSGQEAARRLLEHLQLE 330 (336)
T ss_dssp EETTTTEEECCGGGTTS-SHH-HHHHHHHHHHHHHHHHTTC-
T ss_pred eeCCCCEEEEecccCCc-CHH-HHHHHHHHHHHHHHHHhhcc
Confidence 34678999999987765 455 79999999999999999865
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.11 Score=51.27 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+.+|+|||+|.+|+.+|..+...| .+|+++|+.+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~ 224 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPA 224 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 4579999999999999999999999 99999998753
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.23 Score=49.92 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
..-+|.|||.|.-|+..|..|++.| ++|+++|+++..
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~k 43 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARK 43 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTT
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHH
Confidence 3469999999999999999999999 999999998763
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.14 Score=48.66 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 12 ~~~~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~ 48 (302)
T 1f0y_A 12 KIIVKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTE 48 (302)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 334578999999999999999999999 9999999864
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.32 Score=51.36 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=28.4
Q ss_pred cCceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 380 ENGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
..+||.+||+++. | .|.- .++.+|..++..|...+.+.
T Consensus 341 ~gRV~L~GDAAH~~~P~~GqG~n-~ai~DA~nLawkLa~vl~g~ 383 (639)
T 2dkh_A 341 LPRVFIAGDACHTHSPKAGQGMN-FSMQDSFNLGWKLAAVLRKQ 383 (639)
T ss_dssp CCCEEECGGGTEECCGGGCCTTH-HHHHHHHHHHHHHHHHHTTS
T ss_pred cCcEEEEecccccCCCcccccch-hhHHHHHHHHHHHHHHHcCC
Confidence 4679999999852 2 3444 68899999988888877653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.11 Score=50.74 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+.+|+|||+|.+|+.+|..|...| .+|+++|+++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 4679999999999999999999999 9999999875
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.14 Score=48.91 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~ 53 (483)
..++|+|||+|..|...|..|++.+ . +|+++|++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~ 41 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIA 41 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCC
Confidence 3579999999999999999999998 7 99999875
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.16 Score=51.04 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=33.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|.|||+|.-|...|..|++.| ++|+++|+++.
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e 88 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQ 88 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHH
Confidence 34579999999999999999999999 99999998754
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.17 Score=48.69 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.+++|+|||+|..|...|..|+..+ + +|+|+|.++
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~ 43 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVK 43 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCh
Confidence 4579999999999999999999988 6 899999764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.26 Score=50.33 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCCCCeEEEECccHHHHH-HHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 16 SSNPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~-aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+...++|.|||.|-+|++ +|..|.++| ++|++.|.... . ..+.++..|++++.+..
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~-----------------~----~~~~l~~~gi~~~~g~~ 75 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPN-----------------S----VTQHLTALGAQIYFHHR 75 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCC-----------------H----HHHHHHHTTCEEESSCC
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCC-----------------H----HHHHHHHCCCEEECCCC
Confidence 445689999999999997 699999999 99999996531 1 11234456888776521
Q ss_pred EceEEEecceeeccCEEEEccCCC
Q 011535 95 LGSSVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.+....+|.||++.|..
T Consensus 76 -------~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 76 -------PENVLDASVVVVSTAIS 92 (494)
T ss_dssp -------GGGGTTCSEEEECTTSC
T ss_pred -------HHHcCCCCEEEECCCCC
Confidence 11123589999999973
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.18 Score=48.20 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+++|+|||+|..|..+|..|+..+.-.+++++|.+.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4579999999999999999999987222899999763
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.094 Score=43.66 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|..|...+..|.+.+ .+|++++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 679999999999999999999887 889999875
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.18 Score=49.90 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=32.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||+|.+|+.++..+...| .+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~ 206 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPE 206 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 3689999999999999999999999 89999998753
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.21 Score=49.15 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|+|||+|.+|+.++..+...| .+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 4689999999999999999999999 89999998753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.24 Score=46.46 Aligned_cols=34 Identities=26% Similarity=0.123 Sum_probs=31.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCH
Confidence 478999999999999999999999 9999999864
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.24 Score=48.16 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+|+|+|||||..|..+++.+.+.| ++|+++|.++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 479999999999999999999999 99999998765
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.22 Score=47.60 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=30.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|+|||+|.-|.+.|..|++.+ .+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTG--HCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTT--CEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 68999999999999999999998 999999875
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.25 Score=47.38 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+..++|+|||+|..|.++|..|+..+--.+++++|..
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 3467999999999999999999998711289999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.26 Score=45.07 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....++|.|||+|.-|...|..|++.+ ++|+++++++
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~ 52 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDP 52 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCh
Confidence 346789999999999999999999999 9999999875
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.24 Score=48.38 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
.-...+|||+|||.||+.+|..|...| . +|+++|++
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~G--a~~I~v~D~~ 221 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAG--ATKVTVVDKF 221 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcC--CCeEEEEECC
Confidence 345679999999999999999999998 8 99999987
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.28 Score=43.72 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|.|||+|.-|.+.|..|.+.+ .+|+++++++.
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~ 53 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ 53 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 35679999999999999999999998 99999998764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.27 Score=45.97 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||+|.-|.+.|..|.+.+ ++|+++++++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCcc
Confidence 47999999999999999999999 99999998764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.76 E-value=0.28 Score=46.78 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
+..++|+|||+|..|...|..|+..+ + +|+++|..
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~ 41 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIP 41 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEecc
Confidence 34579999999999999999999998 7 99999976
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.24 Score=45.54 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.++|+|||+|-.|..+|..|++.| + +++|+|+..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~G--v~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAG--VGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcC--CCeEEEEcCCC
Confidence 579999999999999999999999 7 899999875
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.25 Score=46.80 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|.|||+|..|...|..|.+.+ ++|++++++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQW 35 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 368999999999999999999998 999999875
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.28 Score=47.78 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|+|+|.+|..++..|...| .+|+++++++
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~ 200 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINV 200 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 3489999999999999999999999 8999998763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.25 Score=46.86 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~ 54 (483)
++|+|||+|..|.+.|..|+..+ + +|+++|.++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g--~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRG--SCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCCH
Confidence 48999999999999999999988 6 999999753
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.22 Score=52.74 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhc------CCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKA------HQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~------~~~~~v~lie~~~~ 55 (483)
..+|+|||||+|||+||+.|++. + .+|+|+|+.+.
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG--~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPE--AKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTT--CCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCC--CcEEEEEecCC
Confidence 47899999999999999999997 7 99999999753
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.28 Score=47.82 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=32.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
.-...+|+|+|+|-+|..+|..|...| . +|+++|+.
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G--~~~I~v~Dr~ 225 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRK 225 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECC
Confidence 346789999999999999999999998 7 89999986
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.26 Score=47.97 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|.|||+|.-|.+.|..|++.+ .+|+++++++
T Consensus 27 ~~~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~ 62 (356)
T 3k96_A 27 PFKHPIAILGAGSWGTALALVLARKG--QKVRLWSYES 62 (356)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCH
T ss_pred ccCCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 34579999999999999999999999 9999999864
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=0.26 Score=50.06 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|||+|..|+..|..|++.| ++|+++|+++.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~~ 42 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQA 42 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCHH
Confidence 4579999999999999999999999 99999998753
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=90.47 E-value=0.27 Score=46.67 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=30.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+|||+|..|.+.|..++..+.-.+++|+|.++
T Consensus 12 ~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 12 KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 34579999999999999999999988222999999765
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.35 Score=47.58 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=34.6
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+....++|+|||+|..|..++..+.+.| ++|+++|..+.
T Consensus 9 ~~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~ 48 (389)
T 3q2o_A 9 RIILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKN 48 (389)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTT
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCC
Confidence 33446689999999999999999999999 99999997754
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=90.31 E-value=0.31 Score=46.56 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.++|+|||+|..|...|..|++.+ + +|+++|+++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCc
Confidence 468999999999999999999998 7 899999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=0.25 Score=47.11 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...+|+|||+|.-|-.-|..++..| ++|+|+|.++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~ 39 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 3578999999999999999999999 9999999775
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.3 Score=47.01 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=30.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|.-|.+.|..|++.+ .+|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAG--EAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh
Confidence 468999999999999999999999 899999863
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.3 Score=49.19 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||+|..|+..|..|++.| ++|+++|+++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHH
Confidence 68999999999999999999999 99999998753
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.54 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|-.|..+|..|++.| + +++|+|...
T Consensus 35 ~~~~VlivG~GGlG~~ia~~La~~G--vg~itlvD~d~ 70 (346)
T 1y8q_A 35 RASRVLLVGLKGLGAEIAKNLILAG--VKGLTMLDHEQ 70 (346)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEEECCC
Confidence 3579999999999999999999999 7 899998764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.36 Score=46.18 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++|+|||+|..|.+.|..|+..+ + +|+|+|..+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCc
Confidence 4579999999999999999999998 6 999999764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=89.77 E-value=0.37 Score=46.23 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
+++|+|||+|..|...|..|+..+ + +|+++|.++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCH
Confidence 369999999999999999999998 6 899999764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.27 Score=48.84 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...+|+|||.|..|..+|..|.+.+ ++|++||+++
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~ 37 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDP 37 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 3568999999999999999999999 9999999874
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.39 Score=46.97 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|+|+|..|..+|..|...| .+|+++|+++
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~ 199 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVNH 199 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCH
Confidence 4589999999999999999999999 8999998753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.4 Score=44.67 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++|+|.|+|+.|-..+..|.+.+ ++|+++.+.+.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence 478999999999999999999998 99999998753
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=0.37 Score=43.08 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=29.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|.|||+|..|...|..|.+.+ ++|++++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSG--FKVVVGSRN 60 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 4578999999999999999999998 899999875
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.42 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.++|+|||+|..|...|..|+..+ + +|+|+|.++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCH
Confidence 468999999999999999999987 6 899999764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.36 Score=44.91 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=31.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+++|+|.|+|+.|-..+..|.+++ ++|+++.|++
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcCh
Confidence 479999999999999999999998 9999998764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.32 Score=49.17 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~-~v~lie~~~~ 55 (483)
..++|.|||+|.-|+..|..|++. | + +|+++|+++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChh
Confidence 347999999999999999999999 8 9 9999999876
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.44 E-value=0.33 Score=49.27 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|.|||.|..|+..|..|++.+++++|+++|+++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~ 45 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA 45 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 34699999999999999999999944499999998753
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.4 Score=45.36 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|++.| ++|+++|+++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 40 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNP 40 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCH
Confidence 4578999999999999999999999 9999998764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=0.43 Score=46.81 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|||+|..|..+|..+...| .+|+++|+++
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 4689999999999999999999998 8999998753
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.26 E-value=0.38 Score=45.11 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||.|.-|...|..|.+.+ ++|+++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCHH
Confidence 68999999999999999999999 99999998753
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=0.46 Score=44.09 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++++|||+|-+|-.++..|.+.| .+|+|++|.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 689999999999999999999999 9999998874
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=89.25 E-value=0.42 Score=44.44 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++++|+|+|-+|..+|..|++.| .+|++++|+
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT 151 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECC
Confidence 4689999999999999999999999 999999875
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.24 E-value=0.39 Score=46.46 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=30.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|+|||+|..|...|..|.+.+ ++|++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 368999999999999999999998 999999875
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.46 Score=45.39 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++|+|||+|..|.+.|..|+..+ + +++++|..+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~--~~~v~l~Di~~ 39 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQ--LGDVVLFDIAQ 39 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCh
Confidence 3579999999999999999999987 6 999999764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.15 E-value=0.27 Score=46.80 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=29.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|+|||+|--|.+.|..|++.+ .+|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSG--EDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTS--CCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcC
Confidence 68999999999999999999998 899999875
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.11 E-value=0.43 Score=43.01 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+|.|| |..|..++..|++++ ++|+++.|++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~ 55 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNE 55 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECCh
Confidence 35689999998 999999999999999 9999998864
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.45 Score=45.22 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=29.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|..|...|..|++.+-..+|+++|+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 47999999999999999999862238999999864
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.2 Score=51.03 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=27.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
|+|+|||+|..|+-+|..|++ .| .+|+|+.+++.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~--------------------~G-~~V~VlEa~~~ 35 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQA--------------------AG-IPVLLLEQRDK 35 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--------------------TT-CCEEEECCC--
T ss_pred CCEEEECCcHHHHHHHHHHHH--------------------CC-CcEEEEccCCC
Confidence 689999999999999999987 44 46888888753
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.93 E-value=0.48 Score=44.76 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=31.4
Q ss_pred CCCeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.||| +|.-|.+.|..|.+.+ ++|+++++++
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCc
Confidence 346899999 9999999999999998 8999998764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=0.33 Score=48.03 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=29.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|||+|.+|+-+|..|++ .|.++|+|+.|++.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CCCCeEEEEECCCC
Confidence 479999999999999999986 56655999998754
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=88.78 E-value=0.47 Score=45.40 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+|..|.++|..|+..+---+++|+|..
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 457999999999999999999998711289999864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=88.55 E-value=0.47 Score=44.80 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
..++++|||+|.+|..+|..|.+.+ . +|++++|.
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~ 174 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTA--AERIDMANRT 174 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSS
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence 5689999999999999999999998 7 89999876
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.44 E-value=0.36 Score=45.51 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|--|.+.|..|.+.+ .+|++++|++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCC--CeEEEEEecc
Confidence 68999999999999999999999 8999999874
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=0.47 Score=47.24 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|.|||.|.-|+..|..|++ + ++|+++|+++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~ 69 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQA 69 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHH
Confidence 34699999999999999999998 8 99999998854
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=0.63 Score=40.59 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.2
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|+|| |..|..++..|.+.+ .+|+++++++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~ 38 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSS 38 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChh
Confidence 68999998 999999999999998 99999998753
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=88.21 E-value=0.58 Score=41.38 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.0
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|| |..|..++..|++++ ++|+++.|++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCc
Confidence 47999996 999999999999999 9999998863
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.45 Score=44.82 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||+|.-|-..|..|+ .| ++|+++|+++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG--~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SK--HEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cC--CEEEEEECCH
Confidence 5689999999999999999999 98 9999999764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=0.37 Score=48.23 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=31.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|.|||+|..|+..|..|++.| ++|+++|+++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSST 34 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHH
Confidence 47999999999999999999999 99999998753
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=0.5 Score=44.54 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~~ 54 (483)
++|+|||+|..|.+.|..|+..+ . +++|+|..+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~--~~~~v~L~D~~~ 35 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNL--DVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS--CCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEECCh
Confidence 48999999999999999999987 5 899998754
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=0.58 Score=44.45 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=29.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
++|+|||+|..|...|..|+..+ + +|+++|.++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g--~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKE--LGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCeEEEEeCCc
Confidence 68999999999999999999987 5 799998753
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.74 E-value=0.51 Score=45.10 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=29.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~ 53 (483)
++|+|||+|..|.+.|..|++.+ + +|+++|++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~ 34 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVD 34 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCC
Confidence 47999999999999999999998 7 99999875
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=87.72 E-value=0.46 Score=44.23 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++++|+|+|-+|..+|..|.+.+ .+|++++|.
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~ 151 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRT 151 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECC
Confidence 4689999999999999999999999 999999876
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.71 E-value=0.62 Score=43.99 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.-..++|.|||+|..|..+|..|...+ .+|+++++.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~ 189 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARS 189 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECC
Confidence 345789999999999999999999998 899999875
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.67 E-value=0.64 Score=43.73 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|.|||+|..|..+|..|...| .+|+++++.
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~ 187 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG--AKVKVGARE 187 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECC
Confidence 45789999999999999999999998 899999875
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=0.6 Score=41.33 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=29.7
Q ss_pred CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+||| +|..|...|..|.+.+ ++|+++++++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 3799999 9999999999999998 8999998753
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=87.56 E-value=0.38 Score=45.40 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|.|||.|.-|...|..|++.+ ++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence 468999999999999999999999 99999998764
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.50 E-value=0.72 Score=43.18 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=31.7
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+||+|.|| |+.|-..+.+|.++| ++|+++.|++..
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~~~ 36 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKPGP 36 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCc
Confidence 58999998 999999999999999 999999887643
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.62 Score=44.22 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.++|.|||+|.-|...|..|.+.+ ++|+++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 478999999999999999999998 8999998764
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=0.48 Score=46.87 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=29.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||+|..|+..|..|++ + ++|+++|+++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCH
Confidence 479999999999999999999 8 9999999875
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.36 E-value=0.33 Score=43.60 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEE-EecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~l-ie~~~ 54 (483)
..++|.|||+|.-|...|..|.+.+ ++|++ +++++
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~ 57 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGP 57 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCH
Confidence 3579999999999999999999998 89988 77653
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=0.72 Score=43.98 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+++|+|||+|..|.++|..|+..+.-.++.++|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 357999999999999999999988622489999864
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.32 E-value=0.58 Score=36.68 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.++|+|+|+|.+|..++..|.+ .+..+|+++.|+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~--------------------~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT--------------------SSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--------------------CSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHh--------------------CCCceEEEEeCCH
Confidence 4689999999999999999886 5656788888863
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=87.30 E-value=0.59 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=29.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|||+|..|.+.|..|+..+--.+++++|..+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 48999999999999999999987112899999764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.62 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+++|.|||+|.-|...|..|++.| .+|+++++.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENG--EEVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 4679999999999999999999999 999999875
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=87.28 E-value=0.68 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=30.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC--eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~--~v~lie~~ 53 (483)
..++|+|||+|..|..+|..|+..+ + +++++|..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g--~~~ev~L~Di~ 55 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKD--LADEVALVDVM 55 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHC--CCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEECC
Confidence 4589999999999999999999987 5 89999864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=87.27 E-value=0.39 Score=44.97 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||.|.-|...|..|++.+ ++|+++++++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence 58999999999999999999999 9999999875
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.67 Score=46.78 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||+|.-|...|..|++.| ++|+++|+++
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 4578999999999999999999999 9999999864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.81 Score=44.09 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+ |..|..+|..++.++...+++|+|..
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4579999997 99999999999998733489999864
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.64 Score=44.09 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+++|+|||+|--|.+.|..|. .+ .+|++++++
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRR 33 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cC--CceEEEECC
Confidence 368999999999999999999 88 999999875
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=0.55 Score=47.33 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=32.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++++|+|+|..|..+|..|+..| .+|+++|++
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~ 297 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEID 297 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 45789999999999999999999999 999999875
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=87.10 E-value=0.72 Score=44.23 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|+|||+|..|.+.|..|+.++--.+++|+|..
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 4568999999999999999999998722389999864
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=0.58 Score=46.33 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=32.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...++|+|||.|+.|..+|..|...| .+|+++|+++
T Consensus 218 L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp 253 (435)
T 3gvp_A 218 FGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDP 253 (435)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCCh
Confidence 45789999999999999999999998 9999999865
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=0.64 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...|+|+|||+|-+|..++..|++..+..+|+++-|.+.
T Consensus 244 ~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~ 282 (501)
T 4b63_A 244 SKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA 282 (501)
T ss_dssp TSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 467899999999999999999998755589999988764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=87.01 E-value=0.74 Score=38.56 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|+|+|.+|..+|..|.+ .+. +|+++.|+.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~--------------------~g~-~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASS--------------------SGH-SVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--------------------CCC-eEEEEECCH
Confidence 56899999999999999999975 454 799988864
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=87.00 E-value=0.56 Score=44.79 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|++.| ++|+++++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 64 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTP 64 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCH
Confidence 4569999999999999999999999 9999998764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=0.74 Score=43.79 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-++|..|++.| . +|+|+.|.
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~G--a~~V~i~nR~ 187 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDG--VKEISIFNRK 187 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECS
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCC--CCEEEEEECC
Confidence 35689999999999999999999998 8 89999886
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=86.86 E-value=0.55 Score=42.25 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhc
Q 011535 158 STDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
.+++|+|||||.+|...|..|.+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~ 52 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQ 52 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHH
Confidence 68999999999999999999986
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=86.83 E-value=0.74 Score=43.09 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-.++..|++.+ . +|+|++|.
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G--~~~v~i~~R~ 160 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHG--VQKLQVADLD 160 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEECC
Confidence 35689999999999999999999998 8 69999876
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.80 E-value=0.29 Score=44.35 Aligned_cols=34 Identities=6% Similarity=0.036 Sum_probs=29.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+|+|+|..|...|..|.+.+ + |+++|+++
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~ 41 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSE--V-FVLAEDEN 41 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCH
Confidence 3568999999999999999999988 8 99998763
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=86.77 E-value=0.77 Score=40.76 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.9
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|.|| |..|...+..|++++ .+|+++.|++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~ 34 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDP 34 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEecc
Confidence 47999998 999999999999999 9999998753
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=0.85 Score=43.44 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+|..|.+.|..|+..+...+|+++|.+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~ 40 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 357999999999999999999887633489999875
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=0.63 Score=44.58 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
...++|+|.|| |+.|...+..|++.+ ++|+++++.+..
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~ 55 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG 55 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 35689999998 999999999999999 999999987643
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=86.60 E-value=0.49 Score=45.42 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.8
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCC-----CCeEEEEecC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQ-----EAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~-----~~~v~lie~~ 53 (483)
.+++|+|+|| |..|...+..|...+- ..+|.++|..
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~ 45 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP 45 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence 4579999998 9999999999988761 0278888764
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.45 E-value=0.7 Score=41.16 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++|+|.|| |..|...+..|.+.+ .+|++++|++.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 39 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPE 39 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcc
Confidence 478999996 999999999999999 99999998753
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.37 E-value=0.64 Score=44.41 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=29.1
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
++|.|||+|..|...|..|.+.+ ++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEc
Confidence 47999999999999999999999 99999987
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.34 E-value=0.84 Score=43.21 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|.+.+ ++|+++|+++
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G--~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQG--KRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 4578999999999999999999999 9999998874
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=0.71 Score=45.35 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=29.7
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
..+|+|||+|.+|+-+|..|++ .|. +|+|+.|++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQ--------------------NGI-DVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT--------------------TTC-EEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 4589999999999999999986 454 7999998753
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.21 E-value=0.76 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=29.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
...++|+|||+|.-|.+.|..|++.+ .+|+++ +.
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~ 50 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-AR 50 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-Ec
Confidence 46789999999999999999999999 899998 54
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.21 E-value=0.49 Score=47.18 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.1
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++|+|||+|++|+-+|..|++ .|. +|+|+.++.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~--------------------~G~-~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQ--------------------HDV-DVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHH--------------------TTC-EEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHH--------------------CCC-eEEEEcCCC
Confidence 689999999999999999986 454 799999876
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=86.15 E-value=0.69 Score=43.94 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++|.|||.|.-|...|..|++.+ + +|+++|+++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G--~~~V~~~dr~~ 58 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAG--AIDMAAYDAAS 58 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHS--CCEEEEECSSC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC--CCeEEEEcCCC
Confidence 4579999999999999999999999 8 999999864
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=86.15 E-value=0.87 Score=43.60 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..++|+|||+|..|.++|..|+..+--.++.|+|..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 447999999999999999999887622378888863
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=86.12 E-value=0.97 Score=44.17 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...++|+|||+|.-|..++..+.+.| ++|+++|..+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~ 46 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSED 46 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 45689999999999999999999999 99999998754
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.08 E-value=0.88 Score=42.32 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
..++++|+|+|-+|-.++..|.+.+ . +|++++|.
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G--~~~v~i~~R~ 153 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAG--PSELVIANRD 153 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTC--CSEEEEECSC
T ss_pred cCCEEEEECccHHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 5689999999999999999999998 7 89999875
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=0.9 Score=43.15 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-+++..|++.+ . +|+|+.|.
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G--~~~v~v~nRt 181 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEG--IKEIKLFNRK 181 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECS
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 35689999999999999999999998 7 89999886
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=85.94 E-value=0.57 Score=43.72 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
..++++|||+|-+|-.+|..|.+.| . +|++++|.+
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~ 151 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIV--RPTLTVANRTM 151 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTC--CSCCEEECSCG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCH
Confidence 4689999999999999999999998 8 899999875
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.87 E-value=0.65 Score=46.74 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=28.2
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc-EEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR-KVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~-~V~li~r~~ 213 (483)
++|+|||+|.+|+-+|..|++ .+.. +|+|+.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~--------------------~G~~~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSR--------------------APCPPKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHT--------------------SSSCCEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHh--------------------CCCCCcEEEEeCCC
Confidence 589999999999999999986 3432 799998764
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=85.85 E-value=0.91 Score=42.44 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=31.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++++|+|+|-+|-.++..|.+.+ . +|+|++|.
T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~ 159 (281)
T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQ--PASITVTNRT 159 (281)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTC--CSEEEEEESS
T ss_pred ccCCEEEEECchHHHHHHHHHHHhcC--CCeEEEEECC
Confidence 35689999999999999999999988 7 89999875
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=0.88 Score=43.65 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|-.|-.+|..|++.| + +++|+|...
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aG--Vg~ItlvD~D~ 68 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWG--VRKITFVDNGT 68 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCB
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCE
Confidence 4689999999999999999999998 6 899999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 483 | ||||
| d1lqta1 | 216 | c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA | 8e-57 | |
| d1cjca1 | 225 | c.3.1.1 (A:107-331) Adrenodoxin reductase of mitoc | 1e-56 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 6e-28 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 1e-13 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-23 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 5e-20 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 4e-09 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 6e-09 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 6e-07 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 5e-06 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 2e-05 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 3e-04 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 5e-04 | |
| d1gtea3 | 153 | c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas | 7e-04 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 0.001 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 0.002 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 0.002 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 0.004 |
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 185 bits (471), Expect = 8e-57
Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILL 179
DR L IPGEDL G +A +FV WYN HP + +SPDL S AV++G GNVALDVARILL
Sbjct: 1 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILL 59
Query: 180 RPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239
+ LA TDIA +A +L I++V +VGRRGP+QAA T ELRE+ + + V I
Sbjct: 60 TDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDP 119
Query: 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE 299
+ + TDE+ ++ ++ ++L A +P G R + F F P +
Sbjct: 120 AE-LDGITDEDAAAVGKVCKQNIKVLRGY---ADREPRPGHRRMVFRFLTSP----IEIK 171
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
V + + L G G+ A TGE E+L +V++S+GY
Sbjct: 172 GKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 185 bits (471), Expect = 1e-56
Identities = 100/229 (43%), Positives = 131/229 (57%), Gaps = 10/229 (4%)
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+AL IPGE+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL
Sbjct: 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLT 60
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
P + L TDI A AL S ++ V++VGRRGP+Q A T KELRE++ + +
Sbjct: 61 PPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPA 120
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAA-----ASASSQPMLGQRELHFVFFRKPDSFL 295
D + + +R ++R+ ELL + A +++ R FFR P
Sbjct: 121 DF--LGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQV- 177
Query: 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
+ +G+ T L+G G AV TG+ EDL CG+VL SIGY
Sbjct: 178 LPSPDGRRAAGIRLAVTRLEGIG-EATRAVPTGDVEDLPCGLVLSSIGY 225
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 109 bits (272), Expect = 6e-28
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 9/201 (4%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-----QVDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 61
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+S
Sbjct: 62 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPFDDQS 121
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+ NG P+ + + T VI A D L++ L +
Sbjct: 122 GTIPNVGGRINGSPNEYVVGWIKRG-PTGVIGTNKKDAQDTVDTLIKN---LGNAKEGAE 177
Query: 194 AWTALEGSSIRKVYLVGRRGP 214
+ E + + + R P
Sbjct: 178 CKSFPEDHADQVADWLAARQP 198
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 68.2 bits (165), Expect = 1e-13
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 384 YVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSS-GLPKPGREGLLQLLDNRN 442
YV GW+KRGPTG+I TN A++TV ++ ++L + P+ + + L R
Sbjct: 138 YVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQ 197
Query: 443 VRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482
+ V + W+ ID+ E+ G +P+ KL + +LL++
Sbjct: 198 PKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIG 237
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 96.1 bits (238), Expect = 3e-23
Identities = 73/223 (32%), Positives = 103/223 (46%), Gaps = 1/223 (0%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VIN F++
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 62
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ +RC+F+GNV +G V++ EL+ YH VVL+YGAE P +
Sbjct: 63 TARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNM 122
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
G S +K T VI + +ILL+ + ++
Sbjct: 123 EGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKA 182
Query: 201 S-SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242
R V+ V + + G + ++ L
Sbjct: 183 LLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEML 225
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.9 bits (214), Expect = 5e-20
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 383 LYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQGVLASSSGLPKPGREGLLQLLDNRN 442
LY GW+KRGPTG+I T + + T + +DL+ G L S P+PG + LLD+R
Sbjct: 132 LYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG---PRPGSAFIKALLDSRG 188
Query: 443 VRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482
V PV FS WEK+D+EE G KP+EKL +++L++
Sbjct: 189 VWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLL 228
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 54.4 bits (129), Expect = 4e-09
Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 5/161 (3%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
+ ++ ++G+GPA A L + + I ++ GL S + +V
Sbjct: 2 AYSAKIALLGAGPASISCAS-FLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 60
Query: 77 QFSRVVQHERCSFFGNVTLGSSVSLSELRQL-YHVVVLAYGAESDRALGIPGEDLIGVHS 135
+ + G + ++L+ L++ Y + G E L +
Sbjct: 61 EIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120
Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176
R + + + D G N ++
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIV---GMANTTVESVN 158
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 53.3 bits (127), Expect = 6e-09
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 21/159 (13%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVI 75
+ VVG+GPAG A A + QV + D G P E +
Sbjct: 41 VQKKNLAVVGAGPAGLAFAINA--AARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETL 98
Query: 76 NQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135
+ R+++ + L +V+ +L+ ++ A GIP L
Sbjct: 99 RYYRRMIEVTGVTLK----LNHTVTADQLQAFDETIL---------ASGIPNRALAQPLI 145
Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174
G G +++ +L A+ G +AL++
Sbjct: 146 DSGKTVHLIG---GCDVAMEL-DARRAIAQG-TRLALEI 179
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.8 bits (115), Expect = 6e-07
Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 20/185 (10%)
Query: 4 ARAWLSRSFTALSSN-PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
+RA SR F L V +VG+G +G A K + +V II+ P G
Sbjct: 34 SRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93
Query: 63 GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRA 122
G + +V+ + + + E L + L +
Sbjct: 94 G---GQLFSAMVMRKPAHLFLQE---------LEIPYEDEGDYVVVKHAALFISTVLSKV 141
Query: 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT 182
L +P L + V V + + P
Sbjct: 142 LQLPNVKLFNATCVEDLVTRPPTEKGEVT-------VAGVVTNWTLVTQAHGTQCCMDPN 194
Query: 183 EELAT 187
Sbjct: 195 VIELA 199
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 45.6 bits (107), Expect = 5e-06
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 11/193 (5%)
Query: 4 ARAWLSRSFTALSSNP-LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
+R R T + + V VVG+G AG +A + + QV II++ +P G
Sbjct: 17 SREMTRRYMTDMITYAETDVVVVGAGSAG-LSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75
Query: 63 G-----VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGA 117
G + +++ V E+ ++ S + L V + A
Sbjct: 76 GGQLFSAMIVRKPAHLFLDEIG-VAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNA 134
Query: 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
+ L + G + GV + V + ++ V+ G+ A
Sbjct: 135 VAAEDLIVKGNRVGGVVTNWALV---AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 191
Query: 178 LLRPTEELATTDI 190
+ R +
Sbjct: 192 VKRLKSIGMIDHV 204
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 12/60 (20%)
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R I G D V S + L + I+G G + D A L +
Sbjct: 3 RTPPIDGIDHPKVLSYLDV------------LRDKAPVGNKVAIIGCGGIGFDTAMYLSQ 50
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
R+ ++G GPAG+ A +H E QV +ID V P K I
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPS----KTFIASTG 58
Query: 80 RVVQHERCSFFGNVTLGSSVSL 101
+ R G +
Sbjct: 59 LRTELRRAPHLGFHIDFDDAKI 80
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 39.4 bits (90), Expect = 5e-04
Identities = 24/169 (14%), Positives = 44/169 (26%), Gaps = 17/169 (10%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
+ N V +VG+GP+G A V + D G + A
Sbjct: 46 TKNKDSVLIVGAGPSGSEAARV--LMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYH 103
Query: 76 NQFS----RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
+ + + + + L+ V++A GA S+ L +
Sbjct: 104 RDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGA-SECTLWNELKARE 162
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+ + Y +I VAR +
Sbjct: 163 SEWAENDIKGIYLIGDAEAPR----------LIADATFTGHRVAREIEE 201
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.8 bits (87), Expect = 7e-04
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 123 LGIPGEDLIGVHSAREFVWWYN-----GHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
G+ + G +++++F+ G + P ++ ++LG G+ A D A
Sbjct: 8 QGLTQDQ--GFYTSKDFLPLVAKSSKAGMCACHSPLPSIR--GAVIVLGAGDTAFDCATS 63
Query: 178 LLR 180
LR
Sbjct: 64 ALR 66
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 38.4 bits (87), Expect = 0.001
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
RV VVG+G +G +A K L + I++ G +
Sbjct: 2 RVIVVGAGMSG-ISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGIN 49
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 38.2 bits (87), Expect = 0.002
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH 68
+SNP V +VG+G AG A A QV +++ P G VR+ +
Sbjct: 27 TSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVRTYRNEEA 77
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.8 bits (86), Expect = 0.002
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56
P+ + + G+G G A L +V +++
Sbjct: 1 PIDILIAGAGIGGLSCA-LALHQAGIGKVTLLESSSEI 37
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 36.9 bits (84), Expect = 0.004
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR----SGVAPDHPETKIVIN 76
++ ++G+GP+G TA+ L QV + +R +P G+ P T ++
Sbjct: 6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 65
Query: 77 QFSRVVQHERCSFFGNV 93
V + +
Sbjct: 66 TEPIVGPAALPVYPSPL 82
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 483 | |||
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.98 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 99.97 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.93 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.9 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.79 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.68 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.66 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.64 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.62 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.62 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.6 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.58 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.52 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.52 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.51 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.51 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.51 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.49 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.49 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.47 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.45 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 99.38 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.36 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.36 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.35 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.34 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.32 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.32 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.28 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.28 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.28 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.25 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.25 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.24 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.24 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.22 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.22 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.22 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.2 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.18 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.18 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.15 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.15 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.14 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.14 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.14 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.14 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.13 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.13 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.12 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.12 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.1 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.1 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.09 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.06 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.05 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.04 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.03 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.01 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.01 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.99 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.99 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.98 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.97 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.94 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.94 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.92 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.92 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.91 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.91 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.88 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.86 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.86 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.85 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.85 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.85 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.82 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.81 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.81 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.8 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.78 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.76 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.74 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.72 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.7 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.69 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.68 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.68 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.66 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.66 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.63 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.61 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.58 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.58 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.57 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.55 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.54 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.52 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.52 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.51 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.48 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.46 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.45 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.45 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.43 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.42 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.42 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.4 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.38 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.37 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.31 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.3 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.27 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.27 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.24 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.24 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.23 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.22 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.21 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.19 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.17 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.12 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.05 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.0 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 97.96 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 97.95 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.91 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.91 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.87 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.85 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.66 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.63 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.61 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.59 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.58 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.47 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.4 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.38 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.37 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.26 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.24 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.09 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.08 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.08 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.06 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 96.96 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 96.95 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.9 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 96.86 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 96.69 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.67 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 96.57 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.56 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.53 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.51 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 96.43 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.36 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 96.35 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.24 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 96.22 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 96.22 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.13 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.12 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.01 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.92 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.84 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.82 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.72 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.69 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.63 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.55 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 95.18 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 95.17 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.09 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.89 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 94.84 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.76 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.73 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.69 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.51 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.31 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.28 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.15 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.05 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.93 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.81 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.79 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.78 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.74 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.53 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.39 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 93.28 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.22 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.15 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.14 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 93.09 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.07 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.99 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 92.89 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.81 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 92.59 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 92.57 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.52 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.51 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 92.5 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 92.42 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.41 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.86 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.85 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.71 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 91.65 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.62 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.61 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.51 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.4 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 91.19 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 90.97 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 90.85 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 90.76 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.48 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 90.37 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.37 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.27 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.0 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.8 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.78 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.77 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 89.76 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 89.55 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 89.52 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 89.25 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 89.23 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.16 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 88.95 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.89 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 88.68 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 88.65 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.56 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.38 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.33 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.0 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 87.95 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.75 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.62 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 87.53 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 87.45 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 87.11 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 86.89 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 86.67 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 86.03 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 85.8 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 85.72 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 85.67 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 85.41 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 85.34 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 85.24 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.23 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.88 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.76 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.74 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 84.5 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 84.39 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 84.32 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 83.88 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 83.47 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 83.4 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 83.4 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 83.36 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 83.35 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 83.32 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.11 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 83.08 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 82.93 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 82.85 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 82.46 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 82.44 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 82.39 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 82.36 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 82.21 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 81.9 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 81.49 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.42 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 81.39 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 81.33 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 81.25 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 81.04 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 81.01 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 80.89 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 80.88 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 80.7 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 80.35 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.23 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.22 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 80.19 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 80.09 |
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.98 E-value=7.1e-32 Score=246.90 Aligned_cols=216 Identities=40% Similarity=0.625 Sum_probs=187.0
Q ss_pred CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 120 ~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
++.++|||.+++||++|.+|+.|||++|++....+++ .+++|+|||+||+|+|||+.|++++++|..|||++++++.+.
T Consensus 1 dR~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~-~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~ 79 (216)
T d1lqta1 1 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLR 79 (216)
T ss_dssp ECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCC-CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHT
T ss_pred CCCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccc-cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHh
Confidence 3678999999999999999999999999988777777 689999999999999999999999999999999999999999
Q ss_pred cCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011535 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~ 279 (483)
.+++++|++++||++.+++||.+|+||+.+++++.+.+++.++........ ....+..++..+.+.++... .....
T Consensus 80 r~~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~---~~~~~ 155 (216)
T d1lqta1 80 PRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDA-AAVGKVCKQNIKVLRGYADR---EPRPG 155 (216)
T ss_dssp TCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHH-HHHCHHHHHHHHHHHHHHTC---C-CTT
T ss_pred hcCCceEEEEEECChHhCCCChhhhhhhcccCCCCccCCHHHccchhhhhh-hhhccchhHHHHHHHHhhhh---ccccC
Confidence 999999999999999999999999999999999999999887654433222 22355666677777766542 34556
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
.+.+.++|...+.++. + ++++.++++..+++..+++|+..++++|+..+|+||+||.|+||
T Consensus 156 ~~~~~~~~~~~~~~~~--~--~~~v~~l~~~~~~~~~d~~g~~~~~~~g~~~~i~~dlvi~AIGy 216 (216)
T d1lqta1 156 HRRMVFRFLTSPIEIK--G--KRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216 (216)
T ss_dssp SEEEEEECSEEEEEEE--C--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred cceeeeeecccccccc--c--cCceeEEEEEEEEEeeCCCCCeeeecCCcEEEEECCEEEECCCC
Confidence 7789999999988887 4 88999999999999888888877777888889999999999997
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4.1e-31 Score=243.22 Aligned_cols=218 Identities=46% Similarity=0.746 Sum_probs=181.9
Q ss_pred CCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhc
Q 011535 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (483)
Q Consensus 121 ~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~ 200 (483)
+.++|||.+++||++|.+|+.|||++|++....+++ .+++|+|||+||+|+|||+.|.+++.+|.+|||++++++.|+.
T Consensus 2 R~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~-~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~ 80 (225)
T d1cjca1 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 80 (225)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccc-cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence 568999999999999999999999999988887777 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcC-----CC
Q 011535 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASAS-----SQ 275 (483)
Q Consensus 201 ~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~-----~~ 275 (483)
+++++|++++||++.+++|+.+|+|++.+++++.+.+.+.++... ........+..++..+.+.++..... ..
T Consensus 81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
T d1cjca1 81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGL--QDRIKEAARPRKRLMELLLRTATEKPGVEEAAR 158 (225)
T ss_dssp CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTH--HHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccc--hhhhhhhhhHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999999999999999887776432 22223345677777777776654310 01
Q ss_pred CCCCcceEEEeecCCcceeecccCCC-CceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 276 PMLGQRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 276 ~~~~~~~i~~~~~~~~~~v~~~~~~~-g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
.....+++.++|...++++. ++++ +++.++++..+++.++. +......+|+..+++||+||.|+||
T Consensus 159 ~~~~~~~i~~~f~~~p~~i~--~~~~g~~v~~v~~~~~~~~~~~-~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 159 RASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGIG-EATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp HHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESSG-GGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccccccceEEEeeccccccc--ccCCCCeEEEEEEEEeEECCCC-CCCcccCCCcEEEEECCEEEECCCC
Confidence 12346889999999999998 4234 48999999998887542 2233455788889999999999997
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=6.6e-26 Score=209.57 Aligned_cols=101 Identities=57% Similarity=1.041 Sum_probs=89.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~ 99 (483)
++|+|||||||||+||.+|++.+.+++|+|||+.+.+||++++++.+.+...+.+.......+...++.++.++.++.++
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 81 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV 81 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTB
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCccc
Confidence 59999999999999999999886568999999999999999999988888888888888888889999999999998877
Q ss_pred EecceeeccCEEEEccCCCCC
Q 011535 100 SLSELRQLYHVVVLAYGAESD 120 (483)
Q Consensus 100 ~~~~~~~~yd~vvlAtG~~~~ 120 (483)
+..++...||.|+||||+...
T Consensus 82 ~~~~l~~~~d~v~~a~Ga~~~ 102 (230)
T d1cjca2 82 TVQELQDAYHAVVLSYGAEDK 102 (230)
T ss_dssp CHHHHHHHSSEEEECCCCCEE
T ss_pred cHHHHHhhhceEEEEeecccc
Confidence 777766789999999998533
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=1.6e-25 Score=207.87 Aligned_cols=158 Identities=37% Similarity=0.557 Sum_probs=115.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC-----CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH-----QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~-----~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
+++|+|||||||||+||.+|+++| .+++|+|||+.+.+||++++++.|.+...+.+.......+...+++++.|+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 469999999999999999999987 246899999999999999999989988888888888888899999999999
Q ss_pred EEceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCC-CCCCCCCCCCCCCCeEEEEcCCchHH
Q 011535 94 TLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGH-PDGKNLSPDLKSTDTAVILGQGNVAL 172 (483)
Q Consensus 94 ~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~vvVIG~G~~g~ 172 (483)
.++.+...++....||++++|||+. +..+.++|.+...+.....+..+.... .......+. ..+++++|+|+|++++
T Consensus 82 ~v~~~~~~~~~~~~~~~v~~atGa~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~vv~g~g~~a~ 159 (239)
T d1lqta2 82 VVGEHVQPGELSERYDAVIYAVGAQ-SRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWI-KRGPTGVIGTNKKDAQ 159 (239)
T ss_dssp CBTTTBCHHHHHHHSSEEEECCCCC-EECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHH-HHCSCSCTTHHHHHHH
T ss_pred EeccccchhhhhccccceeeecCCC-ccccccccccccccccchhhhhhhhccccccccceee-cCCCEEEEeCCCchHH
Confidence 9887777776667899999999994 455566665544433333332222111 110000101 1245667777777777
Q ss_pred HHHHHH
Q 011535 173 DVARIL 178 (483)
Q Consensus 173 e~A~~L 178 (483)
++++.+
T Consensus 160 d~a~~~ 165 (239)
T d1lqta2 160 DTVDTL 165 (239)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777544
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.2e-20 Score=163.45 Aligned_cols=124 Identities=25% Similarity=0.321 Sum_probs=104.6
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc-cCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g-~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
+..++++|+|||||||||+||..|++++ ++|+|||+.+.+||.+++. ..|++....++..++.++++..+++|++|+
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~ 116 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH 116 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC
Confidence 4456799999999999999999999999 9999999999999988754 458888889999999999999999999998
Q ss_pred EEceEEEecceeeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHH
Q 011535 94 TLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALD 173 (483)
Q Consensus 94 ~v~~~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e 173 (483)
.++. +....||+||+|||+ .++.+.+||.+ .+++++|||+|++++|
T Consensus 117 ~Vt~-----~~~~~~d~vilAtG~-~~~~~~~pg~~----------------------------~g~~v~vigggd~a~~ 162 (179)
T d1ps9a3 117 TVTA-----DQLQAFDETILASGI-PNRALAQPLID----------------------------SGKTVHLIGGCDVAME 162 (179)
T ss_dssp CCCS-----SSSCCSSEEEECCCE-ECCTTHHHHHT----------------------------TTCCEEECGGGTCCSS
T ss_pred EEcc-----cccccceeEEEeecC-CCcccccchhc----------------------------cCCEEEEECCcHhhhh
Confidence 7742 234579999999998 56665555432 4678999999999988
Q ss_pred H
Q 011535 174 V 174 (483)
Q Consensus 174 ~ 174 (483)
+
T Consensus 163 ~ 163 (179)
T d1ps9a3 163 L 163 (179)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=4.6e-17 Score=149.75 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=67.1
Q ss_pred CCceEEEecCeEEEeeecCCCCC--------CCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPV--------NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~--------~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
+|+..++++|.+|+|||.+|... .++. .+..|+.++++|+|.+|++ ++|+.|+|||+|||..++....
T Consensus 136 dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~-l~~~gv~~~~~G~I~vd~~--~~T~~~gIyA~GDv~~~~~l~~- 211 (233)
T d1xdia1 136 DGSTSEHEADVVLVATGASPRILPSGSVPNTSGLG-LERVGIQLGRGNYLTVDRV--SRTLATGIYAAGDCTGLLPLAS- 211 (233)
T ss_dssp TSCEEEEEESEEEECCCEEECCCGGCEEECCSSSC-TTTTTCCCBTTTBCCCCSS--SBCSSTTEEECSGGGTSCSCHH-
T ss_pred CCceeeeecceeeeecCcccccccccccccccccc-cchhhhcccCCCcCCcCCC--cccCCCCEEEEEEeCCCchhHH-
Confidence 56667999999999999998542 1222 2456788999999999987 8999999999999977665554
Q ss_pred hhHHHHHHHHHHHH
Q 011535 399 TNLYCAEETVASIS 412 (483)
Q Consensus 399 ~a~~~g~~~a~~I~ 412 (483)
.|..+|+.+|.||+
T Consensus 212 ~A~~~g~~aa~~~~ 225 (233)
T d1xdia1 212 VAAMQGRIAMYHAL 225 (233)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 79999999999996
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.66 E-value=5.9e-17 Score=145.11 Aligned_cols=177 Identities=10% Similarity=0.086 Sum_probs=113.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~ 240 (483)
+|+|||||++|+|+|..|.+ .....+|+++.|++.. +|....+..++. .
T Consensus 2 KVvIIGgG~~G~e~A~~l~~-------------------~~~~~~V~v~~~~~~~--~~~~~~~~~~l~----------~ 50 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLN-------------------LHPDAEIQWYEKGDFI--SFLSAGMQLYLE----------G 50 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHH-------------------HCTTSEEEEEESSSSS--SBCGGGHHHHHT----------T
T ss_pred EEEEECCcHHHHHHHHHHHh-------------------cCCCCeEEEEeCCCcc--cccccCcchhhc----------c
Confidence 69999999999999999986 2234589999987643 222222211110 0
Q ss_pred cccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCC
Q 011535 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (483)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g 320 (483)
.+ .. ..... ....+.+. ++||++++++.+.++. . ++. .+++.+
T Consensus 51 ~~---~~-~~~~~-----~~~~~~l~-------------~~gi~v~~~~~V~~i~--~-~~~---~v~~~~--------- 93 (198)
T d1nhpa1 51 KV---KD-VNSVR-----YMTGEKME-------------SRGVNVFSNTEITAIQ--P-KEH---QVTVKD--------- 93 (198)
T ss_dssp SS---CC-GGGSB-----SCCHHHHH-------------HTTCEEEETEEEEEEE--T-TTT---EEEEEE---------
T ss_pred cc---cc-hHHHH-----HhhHHHHH-------------HCCcEEEEeeceeeEe--e-ccc---cceeee---------
Confidence 00 00 00000 00012222 6789999999999997 3 233 333332
Q ss_pred ceeeccCCceEEEecCeEEEeeecCCCCCCCC----CccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc--
Q 011535 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGL----PFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT-- 394 (483)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l----~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~-- 394 (483)
..+|+..++++|.+|+|+|..|+...+. .+.. .++.++++|++.+|+. ++|+.|+|||+|||+..+.
T Consensus 94 ----~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~-~~~~~~~~G~i~vd~~--~~T~~~~IyA~GD~a~~~~~~ 166 (198)
T d1nhpa1 94 ----LVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLK-GTLELHPNGLIKTDEY--MRTSEPDVFAVGDATLIKYNP 166 (198)
T ss_dssp ----TTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGT-TTSCBCTTSCBCCCTT--CBCSSTTEEECGGGSCEEEGG
T ss_pred ----cccccccccccceeeEeecceeeccccccccccccc-ccceeccCCceecCCc--ccccccceEEecceeeccccc
Confidence 1256667899999999999988654332 2222 3567788999999987 7899999999999985321
Q ss_pred -------chhHhhHHHHHHHHHHHH
Q 011535 395 -------GIIATNLYCAEETVASIS 412 (483)
Q Consensus 395 -------~~~~~a~~~g~~~a~~I~ 412 (483)
.....|.++|+.+|.||.
T Consensus 167 ~~~~~~~~~a~~A~~~g~~aa~ni~ 191 (198)
T d1nhpa1 167 ADTEVNIALATNARKQGRFAVKNLE 191 (198)
T ss_dssp GTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred CCCcccccHHHHHHHHHHHHHHhhC
Confidence 123358889999988873
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.64 E-value=9.3e-19 Score=161.30 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc-cCCCCCChHHHHHHHHHHHhc---C--CeEE
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQH---E--RCSF 89 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g-~~p~~~~~~~~~~~~~~~~~~---~--~v~~ 89 (483)
....++|+|||||||||+||..|++++ ++|+|||+++.+||.+.+. ..+...............+.. . .+.+
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL 123 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEE
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeee
Confidence 356799999999999999999999999 9999999999999976642 334444444333333322221 1 2222
Q ss_pred EeCeEEceEEEecce-eeccCEEEEccCCCCCCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCC
Q 011535 90 FGNVTLGSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (483)
Q Consensus 90 ~~~~~v~~~~~~~~~-~~~yd~vvlAtG~~~~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G 168 (483)
..+.. .++.... ...||+||+|||+ .+..+.+++.+....+......... .. ...+++++|||+|
T Consensus 124 ~~~~~---~~~~~~~~~~~~d~vviAtG~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~vvViGgG 189 (233)
T d1djqa3 124 ALGQK---PMTADDVLQYGADKVIIATGA-SECTLWNELKARESEWAENDIKGIY-LI---------GDAEAPRLIADAT 189 (233)
T ss_dssp ECSCC---CCCHHHHHTSCCSEEEECCCE-ECCHHHHHHHHTTHHHHHTTCCEEE-EC---------GGGTSCCCHHHHH
T ss_pred ecccc---cccchhhhhhccceeeeccCC-Ccccccccccccccccchhhhhhhh-hc---------cccCCceeEecCc
Confidence 22211 1111121 2369999999998 3444444443322222221111100 00 0146789999999
Q ss_pred chHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 169 ~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
++|+|+|..|++ .+ ++|+++.|+..+
T Consensus 190 ~~g~e~A~~l~~--------------------~g-~~Vtli~r~~~~ 215 (233)
T d1djqa3 190 FTGHRVAREIEE--------------------AN-PQIAIPYKRETI 215 (233)
T ss_dssp HHHHHHHHTTTS--------------------SC-TTSCCCCCCCCC
T ss_pred hHHHHHHHHHHh--------------------cC-CceEEEEecccc
Confidence 999999999986 34 569999999764
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.62 E-value=3.9e-17 Score=144.40 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=72.5
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCC-CCCccCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHK 358 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~-~l~~~~~~ 358 (483)
..+++++++..+.++. . +.. .+. +.+++++++|.||||+|.+|+... ...+....
T Consensus 67 ~~~i~~~~~~~v~~i~--~--~~~--~~~------------------~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~ 122 (183)
T d1d7ya1 67 APEVEWLLGVTAQSFD--P--QAH--TVA------------------LSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122 (183)
T ss_dssp STTCEEEETCCEEEEE--T--TTT--EEE------------------ETTSCEEECSEEEECCCEEECCEEECCHHHHHT
T ss_pred cCCeEEEEeccccccc--c--ccc--eeE------------------ecCCcEeeeeeEEEEEEEEccccccccccccee
Confidence 5578888888877775 2 221 111 123348999999999999997521 12233334
Q ss_pred CcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------chhHhhHHHHHHHHHHHHH
Q 011535 359 GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIATNLYCAEETVASISE 413 (483)
Q Consensus 359 g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---------~~~~~a~~~g~~~a~~I~~ 413 (483)
++.. ++.+.+|++ ++|+.|+|||+|||+..+. .....|+.||+.+|.||++
T Consensus 123 gl~~--~~~I~vd~~--~~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 123 GLAC--DDGIFVDAY--GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp TCCB--SSSEECCTT--CBCSSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred eEee--CCcEEeccc--eeccccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 4443 356889887 7899999999999975321 1234699999999999973
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=3.2e-16 Score=136.08 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=69.7
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
+.+++++++..+..+. . +..+. .. ++ .++++|.+|||+|.+|+. +....|
T Consensus 64 ~~~v~~~~~~~v~~i~--~--~~~~~---~~----------------~~--~~i~~D~li~a~G~~~~~-----~~~~~g 113 (167)
T d1xhca1 64 KRGIEIRLAEEAKLID--R--GRKVV---IT----------------EK--GEVPYDTLVLATGAPNVD-----LARRSG 113 (167)
T ss_dssp HHTEEEECSCCEEEEE--T--TTTEE---EE----------------SS--CEEECSEEEECCCEECCH-----HHHHTT
T ss_pred hccceeeeeccccccc--c--ccccc---cc----------------cc--cccccceeEEEEEecCCc-----hhhhcC
Confidence 5678888888887775 2 33221 11 12 379999999999998754 445567
Q ss_pred cccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---chhHhhHHHHHHHHHHHH
Q 011535 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---GIIATNLYCAEETVASIS 412 (483)
Q Consensus 360 ~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---~~~~~a~~~g~~~a~~I~ 412 (483)
+..+. .+.++++ ++|+.|+|||+|||+..+. +....|+.+|+.+|++|.
T Consensus 114 l~~~~--~i~v~~~--~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~ 165 (167)
T d1xhca1 114 IHTGR--GILIDDN--FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK 165 (167)
T ss_dssp CCBSS--SEECCTT--SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT
T ss_pred ceeCC--ceeeccc--cEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHHcC
Confidence 76653 3778877 7899999999999986543 233368888888888774
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.60 E-value=1e-15 Score=139.65 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=68.3
Q ss_pred CceEEEecCeEEEeeecCCCCCCCC-----CccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHH
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNGL-----PFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLY 402 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~l-----~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~ 402 (483)
....++.++.+++++|.+|...+.. -+.++.|+.++++|+|.+|++ ++|++|+|||+|||.+++..+. .|+.
T Consensus 136 ~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~--~~T~vpgiyA~GDv~~g~~l~~-~A~~ 212 (229)
T d3lada1 136 GSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDY--CATSVPGVYAIGDVVRGAMLAH-KASE 212 (229)
T ss_dssp SCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTT--SBCSSTTEEECGGGSSSCCCHH-HHHH
T ss_pred ccceeeecccccccCCcccccccccccccccchHhcCeeecCCCcEEeccc--ccCCCCCEEEEeCCcchHHHHH-HHHH
Confidence 3446889999999999887542211 144677999999999999988 8999999999999998887766 7999
Q ss_pred HHHHHHHHHHH
Q 011535 403 CAEETVASISE 413 (483)
Q Consensus 403 ~g~~~a~~I~~ 413 (483)
+|..+|++|+.
T Consensus 213 ~G~~aa~~i~g 223 (229)
T d3lada1 213 EGVVVAERIAG 223 (229)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999998864
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.4e-15 Score=139.63 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=66.5
Q ss_pred CCceEEEecCeEEEeeecCCCCCC-------CCCccCCCCcccCC-CCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPVN-------GLPFDNHKGIVPNI-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~~-------~l~~~~~~g~~~~~-~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.+....+.++.+++++|.+|..+. .+ ..+..|+.++. .|+|.+|++ ++|++|+|||+|||..++.....
T Consensus 137 ~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~-~l~~~gv~l~~~~g~I~vd~~--~~TsvpgIyA~GDv~~g~~~l~~ 213 (235)
T d1h6va1 137 KGKEKVYSAERFLIATGERPRYLGIRDSCTRTI-GLETVGVKINEKTGKIPVTDE--EQTNVPYIYAIGDILEGKLELTP 213 (235)
T ss_dssp TSCEEEEEEEEEEECCCEEECCCSSEEESCTTS-CCTTTTCCCCSSSCCBCCCTT--SBCSSTTEEECGGGBTTSCCCHH
T ss_pred cccccccccccceeecCCCceeEEEeeccceee-ccccceeeeccccCccccCCc--cccCCCCEEEEEeccCCCcccHH
Confidence 455568999999999999986421 11 23456788886 599999998 89999999999999877665555
Q ss_pred hhHHHHHHHHHHHH
Q 011535 399 TNLYCAEETVASIS 412 (483)
Q Consensus 399 ~a~~~g~~~a~~I~ 412 (483)
.|+.+|+.+|++|+
T Consensus 214 ~A~~eG~~aa~~~~ 227 (235)
T d1h6va1 214 VAIQAGRLLAQRLY 227 (235)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 79999999999885
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.52 E-value=1.9e-15 Score=133.29 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=58.1
Q ss_pred eEEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc---------chhHhh
Q 011535 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIATN 400 (483)
Q Consensus 330 ~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~---------~~~~~a 400 (483)
..++++|.++|++|.+|+. +.+.+....++.. +|.+.+|++ ++|+.|+|||+|||+..+. .....|
T Consensus 97 ~~~i~~d~~i~~~G~~~~~-~~~~~~~~~~~~~--~~~i~Vd~~--~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A 171 (185)
T d1q1ra1 97 GRALDYDRLVLATGGRPLI-PNCELASAAGLQV--DNGIVINEH--MQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNA 171 (185)
T ss_dssp SCEEECSEEEECCCEEEEE-ECCHHHHHTTCCB--SSSEECCTT--SBCSSTTEEECGGGEEEEETTTTEEEECCSHHHH
T ss_pred eeEEEeeeeeeeeecccCC-CCchhHHhCCccc--cCccccCCc--cccchhhhhcchhhhccccccCCcccchhhHHHH
Confidence 3589999999999998753 2333444444443 567888887 7899999999999975432 234579
Q ss_pred HHHHHHHHHHHH
Q 011535 401 LYCAEETVASIS 412 (483)
Q Consensus 401 ~~~g~~~a~~I~ 412 (483)
++||+.+|++|+
T Consensus 172 ~~~g~~aa~~i~ 183 (185)
T d1q1ra1 172 LEQARKIAAILC 183 (185)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 999999999885
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.52 E-value=1.5e-13 Score=124.54 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=65.3
Q ss_pred CceEEEecCeEEEee--------ecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHh
Q 011535 328 GEFEDLDCGMVLKSI--------GYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIAT 399 (483)
Q Consensus 328 g~~~~i~~D~vi~a~--------G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~ 399 (483)
....++.++.+|+++ |.+|++ .++ ..++.|+.++++|+|.+|++ ++|+.|+|||+|||..++..+. .
T Consensus 127 ~~~~~~~~~~iiIa~g~~p~~~~G~~p~~-~~l-~l~~~gv~~~~~G~I~vd~~--~~T~~~gvyA~GDv~~~~~~~~-~ 201 (223)
T d1ebda1 127 DSAQTYTFKNAIIATGSRPIELVGRRPNT-DEL-GLEQIGIKMTNRGLIEVDQQ--CRTSVPNIFAIGDIVPGPALAH-K 201 (223)
T ss_dssp TEEEEEECSEEEECCCEEECCBSCEEESC-SSS-STTTTTCCBCTTSCBCCCTT--CBCSSTTEEECGGGSSSCCCHH-H
T ss_pred ccceEEecccEEEEcCCCccccccceecC-CCC-ChHhcCceECCCCCEeECCC--CCCCCCCEEEEeccCCCcccHH-H
Confidence 344588999999986 555543 222 24677899999999999987 8999999999999998887776 7
Q ss_pred hHHHHHHHHHHHH
Q 011535 400 NLYCAEETVASIS 412 (483)
Q Consensus 400 a~~~g~~~a~~I~ 412 (483)
|+.+|+.+|++|+
T Consensus 202 A~~~g~~aa~~i~ 214 (223)
T d1ebda1 202 ASYEGKVAAEAIA 214 (223)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999985
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.51 E-value=1e-13 Score=125.52 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=66.3
Q ss_pred CceEEEecCeEEEeeecC-----CCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHH
Q 011535 328 GEFEDLDCGMVLKSIGYK-----SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLY 402 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~-----~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~ 402 (483)
.....+.+|.||+|||.+ |+. .++ ..+..|+.++++|+|.+|+. ++|++|+|||+|||..+|..+. .|+.
T Consensus 130 ~~~~~~~a~~VIiATGs~~~gr~p~~-~~l-~l~~~gv~~~~~G~i~vd~~--~~T~v~gi~A~GDv~~g~~l~~-~A~~ 204 (221)
T d1dxla1 130 GENTVVKGKHIIIATGSDVKGRTPFT-SGL-NLDKIGVETDKLGRILVNER--FSTNVSGVYAIGDVIPGPMLAH-KAEE 204 (221)
T ss_dssp SCCEEEECSEEEECCCEEECCEEECC-TTS-CCTTTTCCBCSSSCBCCCTT--CBCSSTTEEECSTTSSSCCCHH-HHHH
T ss_pred ccccccccceEEEeECCCccCccccC-CCC-ChHhcCceEcCCCcEEeCCC--cccCCCCEEEEeccCCCcccHH-HHHH
Confidence 344689999999999954 433 333 23677999999999999987 8899999999999998888776 7999
Q ss_pred HHHHHHHHHH
Q 011535 403 CAEETVASIS 412 (483)
Q Consensus 403 ~g~~~a~~I~ 412 (483)
+|+.+|++|+
T Consensus 205 ~g~~aa~~i~ 214 (221)
T d1dxla1 205 DGVACVEYLA 214 (221)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999998874
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.51 E-value=5.9e-14 Score=122.88 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=59.6
Q ss_pred ceEEEecCeEEEeeecCCCCCCCCC-----ccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCC---CcchhHhh
Q 011535 329 EFEDLDCGMVLKSIGYKSVPVNGLP-----FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---PTGIIATN 400 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~~~~~l~-----~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g---~~~~~~~a 400 (483)
+.+++++|.+|+|+|.+|+.. .++ +....++..+..........+ +.++.++||++||++.+ |.... .|
T Consensus 91 ~~~~i~~D~li~atG~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~iGd~~~~~~~p~~~~-~A 167 (186)
T d1fcda1 91 GGAEFGYDRCVVAPGIELIYD-KIEQRAGKIAQIAGLTNDAGWCPVDIKTF-ESSIHKGIHVIGDASIANPMPKSGY-SA 167 (186)
T ss_dssp TSCEEECSEEEECCCEEECCT-TSTEEECHHHHHHTCCCTTSSEEBCSSSC-BBSSSTTEEECTTSEECTTCCSSHH-HH
T ss_pred cceeeccceEEEEeccccchh-hhhhhhhhheeccCcccccccccceeeee-ecccccCceEeccccccCCCCchHh-HH
Confidence 335899999999999998752 111 111223334433333333333 66889999999999854 33344 69
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 011535 401 LYCAEETVASISEDLEQG 418 (483)
Q Consensus 401 ~~~g~~~a~~I~~~l~~~ 418 (483)
..||+.+|.||...+.+.
T Consensus 168 ~~q~~~~A~ni~~~~~G~ 185 (186)
T d1fcda1 168 NSQGKVAAAAVVVLLKGE 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999874
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.51 E-value=1.7e-13 Score=127.77 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=66.7
Q ss_pred EEEecCeEEEeeecCCCCCCCCCc-------cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPF-------DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYC 403 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~-------~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~ 403 (483)
++++||.||+|+|.+|+. ++++. .+..|+.++++|+|.||++ ++|+.|+|||+|||..+|..+. .|+.+
T Consensus 170 ~~i~ad~viiAtG~~P~~-~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~--~~Ts~~~IyA~GDv~~~~~l~~-~A~~~ 245 (261)
T d1mo9a1 170 KVFKAKNLILAVGAGPGT-LDVPEQPRSAELAKILGLDLGPKGEVLVNEY--LQTSVPNVYAVGDLIGGPMEMF-KARKS 245 (261)
T ss_dssp EEEEBSCEEECCCEECCC-CCSTCEECCHHHHHHHTCCBCTTSCBCCCTT--SBCSSTTEEECGGGGCSSCSHH-HHHHH
T ss_pred ceEeeeeeeeccCCCCCc-CcccccccccccccceeeeeccCCEEEeCCC--cccCCCCEEEEEEeCCCcccHH-HHHHH
Confidence 589999999999999976 22322 2345789999999999988 8899999999999998888777 79999
Q ss_pred HHHHHHHHH
Q 011535 404 AEETVASIS 412 (483)
Q Consensus 404 g~~~a~~I~ 412 (483)
|+.+|.+|+
T Consensus 246 G~~aa~~i~ 254 (261)
T d1mo9a1 246 GCYAARNVM 254 (261)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 999999985
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.2e-14 Score=129.51 Aligned_cols=106 Identities=10% Similarity=0.011 Sum_probs=75.7
Q ss_pred CCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCC
Q 011535 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH 357 (483)
Q Consensus 278 ~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~ 357 (483)
..+.||++++++.+.+|. . ++. .|++ .++++++||.||+|+|..|+.. ++...
T Consensus 93 ~~~~gI~~~~g~~V~~id--~-~~~---~V~l------------------~dG~~i~~d~lViAtG~~~~~~---~l~~~ 145 (213)
T d1m6ia1 93 IENGGVAVLTGKKVVQLD--V-RDN---MVKL------------------NDGSQITYEKCLIATGGTEPNV---ELAKT 145 (213)
T ss_dssp STTCEEEEEETCCEEEEE--G-GGT---EEEE------------------TTSCEEEEEEEEECCCEEEECC---TTHHH
T ss_pred HHHCCeEEEeCCEEEEee--c-cCc---eeee------------------ccceeeccceEEEeeeeecchh---hhhhc
Confidence 347899999999999997 3 222 2322 2234899999999999887652 24344
Q ss_pred CCccc-CCCCeeeecCCCCCCcccCceeeeccCCCCCc--------chhHhhHHHHHHHHHHHHH
Q 011535 358 KGIVP-NIRGRVLKNISGDSSQVENGLYVCGWLKRGPT--------GIIATNLYCAEETVASISE 413 (483)
Q Consensus 358 ~g~~~-~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~--------~~~~~a~~~g~~~a~~I~~ 413 (483)
.|+.+ +..|.+.++++ ++++ |+|||+|||+..+. .....|+.||+.+|.||+.
T Consensus 146 ~gl~~~~~~~~i~vd~~--l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g 207 (213)
T d1m6ia1 146 GGLEIDSDFGGFRVNAE--LQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 207 (213)
T ss_dssp HTCCBCTTTCSEECCTT--CEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred cchhhhhhhhhhhhhHh--cCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcC
Confidence 56665 45688999987 5566 99999999974321 1234689999999998863
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=4.6e-14 Score=128.93 Aligned_cols=75 Identities=17% Similarity=0.108 Sum_probs=60.9
Q ss_pred ecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 334 DCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 334 ~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
..+..+.++|.+|+. +.+ ..+..|+.++++|++.+|.. ++|+.|+|||+||+..++..+. .|+.+|..+|++|+.
T Consensus 153 ~~~~~~~~~G~~p~~-~~l-~l~~~gv~~~~~g~i~vd~~--~~T~~~~v~A~GD~~~g~~l~~-~a~~~G~~aa~~i~~ 227 (233)
T d1v59a1 153 TGSEVTPFVGRRPYI-AGL-GAEKIGLEVDKRGRLVIDDQ--FNSKFPHIKVVGDVTFGPMLAH-KAEEEGIAAVEMLKT 227 (233)
T ss_dssp CCEEECCCSCEEECC-TTS-CTTTTTCCBCTTSCBCCCTT--SBCSSTTEEECGGGSSSCCCHH-HHHHHHHHHHHHHHH
T ss_pred cccccceecccccCC-CCc-CchhcCeEEcCCCcEEECCe--EecCCCCEEEEcCCcccHHHHH-HHHHHHHHHHHHHcc
Confidence 344555688888865 333 34677899999999999988 7899999999999998888666 799999999999854
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.47 E-value=1e-13 Score=122.99 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=64.9
Q ss_pred EEEecCeEEEeeecCCCCC-CCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-chhHhhHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPV-NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT-GIIATNLYCAEETV 408 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~-~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~-~~~~~a~~~g~~~a 408 (483)
.+..+|.+++++|...... +...+ ...+++++++|++.+++.. ++|+.|||||+|||...+. .++ .|+.+|..+|
T Consensus 106 ~~~~~~~~~~a~g~~~~g~~p~~~~-~~~~veld~~G~i~~~~~~-~~Ts~~GV~a~GDv~~~~~r~~v-~A~g~G~~aA 182 (192)
T d1vdca1 106 KAILADAVILAIGAVAKGHEPATKF-LDGGVELDSDGYVVTKPGT-TQTSVPGVFAAGDVQDKKYRQAI-TAAGTGCMAA 182 (192)
T ss_dssp EEEEEEEEEECCCEEECCEEESCGG-GTTSSCBCTTSCBCCCTTS-CBCSSTTEEECGGGGCSSCCCHH-HHHHHHHHHH
T ss_pred eeeeeeeEEEEeeeeecccCchHHH-hcCceeecCCCeEEeCCCc-eEecCCCEEEeeecCCcccceEE-EEEechHHHH
Confidence 4788999999999653211 01112 2347889999999998755 8999999999999987764 455 7999999999
Q ss_pred HHHHHHHhc
Q 011535 409 ASISEDLEQ 417 (483)
Q Consensus 409 ~~I~~~l~~ 417 (483)
.++.++|+.
T Consensus 183 ~~~~~yl~~ 191 (192)
T d1vdca1 183 LDAEHYLQE 191 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999863
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.45 E-value=2.8e-13 Score=110.60 Aligned_cols=121 Identities=15% Similarity=0.206 Sum_probs=85.5
Q ss_pred CCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEE
Q 011535 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (483)
Q Consensus 127 g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V 206 (483)
|.+.++||++..+...+.. ..+++++|||||++|+|+|..|.+ ...+|
T Consensus 1 G~~~~gv~~~~~~~~~l~~-----------~~~~~vvVvGgG~ig~E~A~~l~~---------------------~g~~v 48 (121)
T d1mo9a2 1 GVNAKGVFDHATLVEELDY-----------EPGSTVVVVGGSKTAVEYGCFFNA---------------------TGRRT 48 (121)
T ss_dssp TTTSBTEEEHHHHHHHCCS-----------CCCSEEEEECCSHHHHHHHHHHHH---------------------TTCEE
T ss_pred CCCCCCEEeHHHHHHHHhh-----------CCCCEEEEECCCHHHHHHHHHHHh---------------------cchhh
Confidence 5567889988876643321 157899999999999999999985 34689
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEe
Q 011535 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (483)
Q Consensus 207 ~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~ 286 (483)
+++.|++.+...+.. ...+.+.+.+. +++|+++
T Consensus 49 t~i~~~~~~l~~~d~----------------------------------~~~~~~~~~l~-------------~~gI~v~ 81 (121)
T d1mo9a2 49 VMLVRTEPLKLIKDN----------------------------------ETRAYVLDRMK-------------EQGMEII 81 (121)
T ss_dssp EEECSSCTTTTCCSH----------------------------------HHHHHHHHHHH-------------HTTCEEE
T ss_pred eEeeccchhhccccc----------------------------------chhhhhhhhhh-------------ccccEEE
Confidence 999999876433331 12222233333 6799999
Q ss_pred ecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee
Q 011535 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 287 ~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
+++.+.++.++ .++.+..+.... .++.++++||+||+|+|
T Consensus 82 ~~~~v~~i~~~--~~~~~~~~~~~~---------------~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 82 SGSNVTRIEED--ANGRVQAVVAMT---------------PNGEMRIETDFVFLGLG 121 (121)
T ss_dssp SSCEEEEEEEC--TTSBEEEEEEEE---------------TTEEEEEECSCEEECCC
T ss_pred cCCEEEEEEec--CCceEEEEEEEe---------------CCCCEEEEcCEEEEEEC
Confidence 99999999832 356555443322 45567899999999998
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.38 E-value=1.6e-12 Score=110.05 Aligned_cols=135 Identities=23% Similarity=0.378 Sum_probs=92.7
Q ss_pred CCeeecceeeeeecC-----CCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccE
Q 011535 131 IGVHSAREFVWWYNG-----HPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRK 205 (483)
Q Consensus 131 ~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~ 205 (483)
+|++.+.+|+.+.+. .+......+ ..+++|+|||||++|+|+|+.+.+ .+++.
T Consensus 14 ~G~~~a~dfL~~~~~~~~~~~~~~~~~~p--~~~~kVvVIGGGdtA~D~A~~a~r--------------------~GA~~ 71 (153)
T d1gtea3 14 QGFYTSKDFLPLVAKSSKAGMCACHSPLP--SIRGAVIVLGAGDTAFDCATSALR--------------------CGARR 71 (153)
T ss_dssp TTEEEHHHHHHHHHHHHCBTTBSCCCCCC--CCCSEEEEECSSHHHHHHHHHHHH--------------------TTCSE
T ss_pred CCEEEHHHHHHHHHhccccCCCcccCccc--cCCCEEEEECCChhHHHHHHHHHH--------------------cCCcc
Confidence 489999999876542 222221111 246789999999999999999886 68999
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEE
Q 011535 206 VYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHF 285 (483)
Q Consensus 206 V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~ 285 (483)
|++++|++...+.....+..+ .. ..++.+
T Consensus 72 V~vi~rr~~~~~~a~~~~~~~-------------------------------------a~--------------~~~~~~ 100 (153)
T d1gtea3 72 VFLVFRKGFVNIRAVPEEVEL-------------------------------------AK--------------EEKCEF 100 (153)
T ss_dssp EEEECSSCGGGCCSCHHHHHH-------------------------------------HH--------------HTTCEE
T ss_pred eeEEEeCChhhhccchhheee-------------------------------------cc--------------ccccee
Confidence 999999986543333222111 11 456788
Q ss_pred eecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 286 VFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 286 ~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
++...+.++. . +++++..++....+. +++|+.... +++..+|+||+||+|+|.
T Consensus 101 ~~~~~~~ei~--~-~~~~~~~v~~~~~e~--d~~G~~~~~-~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 101 LPFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKWNED-EDQIVHLKADVVISAFGS 153 (153)
T ss_dssp ECSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCEEEE-EEEEEEEECSEEEECSCE
T ss_pred EeccccEEEE--e-cCCceEEEEEEEeeE--CCCCCEecC-CCCEEEEECCEEEECcCc
Confidence 8888888887 5 467777776655443 344654433 467778999999999983
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=3.5e-12 Score=115.30 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=65.0
Q ss_pred EEEecCeEEEeeecCCCCC-------CCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPV-------NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYC 403 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~-------~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~ 403 (483)
.++.++.+++++|..|... .+|.+ +..|+.++++|+|.+|++ ++|+.|||||+|||..++.... .|+.+
T Consensus 128 ~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L-~~~gv~~~~~G~I~vd~~--~~T~~~gvyA~GDv~~~~~l~~-~A~~~ 203 (221)
T d3grsa1 128 KKYTAPHILIATGGMPSTPHERVPNTKDLSL-NKLGIQTDDKGHIIVDEF--QNTNVKGIYAVGDVCGKALLTP-VAIAA 203 (221)
T ss_dssp EEEECSCEEECCCEEECCCCTEEESCTTTTG-GGTTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGTSSCCHH-HHHHH
T ss_pred cccccceeEEecCccccCCCccccCCCCcCc-hhcCcEECCCccEEeCCC--ccccCCcEEEEEEccCCcCcHH-HHHHH
Confidence 4788999999999776431 22222 566899999999999998 8899999999999987766655 79999
Q ss_pred HHHHHHHHHHH
Q 011535 404 AEETVASISED 414 (483)
Q Consensus 404 g~~~a~~I~~~ 414 (483)
|+.+|++|..+
T Consensus 204 G~~aa~~~~~~ 214 (221)
T d3grsa1 204 GRKLAHRLFEY 214 (221)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHcCC
Confidence 99999988765
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.36 E-value=3.8e-12 Score=115.90 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=60.0
Q ss_pred EEEecCeEEEeeecC-CCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYK-SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVA 409 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~-~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~ 409 (483)
....++-++++.|.+ |.+. . .+.+..|+.++++|+|.+|+. ++|++|||||+|||..+|..+. .|+.+|+.+|.
T Consensus 145 ~~~~~~~~~l~~~~~~~~~~-~-~~~e~~g~~~d~~G~I~vd~~--~~TsvpgVyAaGDv~~~~~l~~-~A~~eG~~Aa~ 219 (229)
T d1ojta1 145 KIVAFKNCIIAAGSRAPNGK-L-ISAEKAGVAVTDRGFIEVDKQ--MRTNVPHIYAIGDIVGQPMLAH-KAVHEGHVAAE 219 (229)
T ss_dssp EEEEEEEEEECCCEEEECGG-G-TTGGGTTCCCCTTSCCCCCTT--SBCSSTTEEECGGGTCSSCCHH-HHHHHHHHHHH
T ss_pred cceecceEEEEecccCCccc-c-cchhhhCccCCCCCCEEcCCC--ccCCCCCEEEEEecCCCcchHH-HHHHHHHHHHH
Confidence 355566666666654 4331 1 244678999999999999987 8999999999999988887665 79999999999
Q ss_pred HHH
Q 011535 410 SIS 412 (483)
Q Consensus 410 ~I~ 412 (483)
+|+
T Consensus 220 ~i~ 222 (229)
T d1ojta1 220 NCA 222 (229)
T ss_dssp HHT
T ss_pred HHc
Confidence 884
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=2.1e-12 Score=114.13 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=59.3
Q ss_pred EEEecCeEEEeeecCCCCC-CCCCccCCCCcccCCCCeeeecCCC---CCCcccCceeeeccCCCCC-cchhHhhHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPV-NGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGP-TGIIATNLYCAE 405 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~-~~l~~~~~~g~~~~~~G~v~v~~~~---~~~t~~p~vya~Gd~~~g~-~~~~~~a~~~g~ 405 (483)
..++++.+++++|..+... +...+.. ..+++ ++|++.++... .++|++|+||++|||+..+ ..++ +|+.+|.
T Consensus 101 ~~~~~~~viva~G~~~~~~~~~~~~~~-~~~e~-~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~~~q~i-~Aag~G~ 177 (190)
T d1trba1 101 GEYTCDALIIATGASARYHSPNTAIFE-GQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAI-TSAGTGC 177 (190)
T ss_dssp CEEEEEEEEECCCEEECCEEESCGGGT-TTSCE-ETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHH-HHHHHHH
T ss_pred eeEeeeeeeeecceeeeeecccceeec-ceEec-CCcEEEEecCCcccccccccCeEEEeEEecCcceeEEE-EEeccHH
Confidence 3789999999999876431 1111211 12333 35888877431 1579999999999998755 4555 7999999
Q ss_pred HHHHHHHHHHhc
Q 011535 406 ETVASISEDLEQ 417 (483)
Q Consensus 406 ~~a~~I~~~l~~ 417 (483)
.+|.++.++|+.
T Consensus 178 ~AA~~a~~yl~~ 189 (190)
T d1trba1 178 MAALDAERYLDG 189 (190)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.1e-13 Score=125.09 Aligned_cols=150 Identities=11% Similarity=0.174 Sum_probs=90.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-eecccCCCC---------------------------CC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDH---------------------------PE 70 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl-~~~g~~p~~---------------------------~~ 70 (483)
+++|+||||||||++||.++++.| .+|+|||+.. +||. ++.++.|.. ..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 78 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYG--QKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN 78 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCccccc
Confidence 579999999999999999999999 9999999965 5653 222221210 00
Q ss_pred hHH-----------HHHHHHHHHhcCCeEEEeCeEEce---EEEecceeeccCEEEEccCCCCCCCCCCCCCCCCC----
Q 011535 71 TKI-----------VINQFSRVVQHERCSFFGNVTLGS---SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIG---- 132 (483)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~---~~~~~~~~~~yd~vvlAtG~~~~~~~~ipg~~~~~---- 132 (483)
.+. +...+..++...++++........ ..........++.+++|||+ .|..|.+|+.+.-+
T Consensus 79 ~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~-~p~ip~ip~~~~l~l~~~ 157 (217)
T d1gesa1 79 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPREPANDNINLEAA 157 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCEEESCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCc-cccCCCCCCcCCcccccc
Confidence 111 112234445566777765543321 22233334568999999998 57777777655222
Q ss_pred -eeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhc
Q 011535 133 -VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 133 -v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
+...... ++. . +..... ..++|.|||+|.+|+|+|..+.+
T Consensus 158 gv~~~~~~--~i~-~----d~~~~t-~~~~i~~iG~g~~g~ela~~~~~ 198 (217)
T d1gesa1 158 GVKTNEKG--YIV-V----DKYQNT-NIEGIYAVGDNTGAVELTPVAVA 198 (217)
T ss_dssp TCCBCTTS--CBC-C----CTTSBC-SSTTEEECSGGGTSCCCHHHHHH
T ss_pred cEEEcCCc--cEe-e----Cchhcc-CCCcEEEECCCccHHHHHHHHHH
Confidence 2111100 000 0 001111 34689999999999999987765
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.32 E-value=1.4e-13 Score=122.18 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.++||+||||||+||+||.+|+++| + +|+|||+++.++|.+++.. +...................+..+..+..++
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 79 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCcccchhhhhc-cccccccccccchhhhhhccceeEEeeEEec
Confidence 4689999999999999999999999 8 5999999999999988876 5555555555555555666677777776664
Q ss_pred eEE-Eeccee-eccCEEEEccCCC
Q 011535 97 SSV-SLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 97 ~~~-~~~~~~-~~yd~vvlAtG~~ 118 (483)
... ...... ..++.+++|+|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~ia~g~~ 103 (196)
T d1gtea4 80 ENEITLNTLKEEGYKAAFIGIGLP 103 (196)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCC
T ss_pred cceeeeehhhccccceeeEEeccc
Confidence 321 111111 3589999999973
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.32 E-value=1e-12 Score=106.84 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=78.5
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|++||.+.+ +++.+.+..... +...+..+++++|||+|++|+|+|..|.+ .
T Consensus 2 P~ipG~~~~-v~~lrtl~Da~~-------l~~~~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~- 52 (121)
T d1d7ya2 2 PTLQGATMP-VHTLRTLEDARR-------IQAGLRPQSRLLIVGGGVIGLELAATART--------------------A- 52 (121)
T ss_dssp GGGTTCSSC-EEECCSHHHHHH-------HHHHCCTTCEEEEECCSHHHHHHHHHHHH--------------------T-
T ss_pred ccCCCCCCC-EEEeCCHHHHHH-------HHHhhhcCCeEEEECcchhHHHHHHHhhc--------------------c-
Confidence 578898764 765544332111 00012256899999999999999999986 3
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
..+|+++.+++.+......+++ .+.+.+.+. ++|
T Consensus 53 g~~Vtli~~~~~~l~~~~~~~~---------------------------------~~~~~~~l~-------------~~G 86 (121)
T d1d7ya2 53 GVHVSLVETQPRLMSRAAPATL---------------------------------ADFVARYHA-------------AQG 86 (121)
T ss_dssp TCEEEEEESSSSTTTTTSCHHH---------------------------------HHHHHHHHH-------------TTT
T ss_pred cceEEEEeeccccccccCCHHH---------------------------------HHHHHHHHH-------------HCC
Confidence 3689999999876432221222 222233333 789
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
|+++++..+.++. ++ .+.+. +| ++++||+||+|+|
T Consensus 87 V~i~~~~~v~~~~-----~~---~v~l~----------------dg--~~i~~D~vi~a~G 121 (121)
T d1d7ya2 87 VDLRFERSVTGSV-----DG---VVLLD----------------DG--TRIAADMVVVGIG 121 (121)
T ss_dssp CEEEESCCEEEEE-----TT---EEEET----------------TS--CEEECSEEEECSC
T ss_pred cEEEeCCEEEEEe-----CC---EEEEC----------------CC--CEEECCEEEEeeC
Confidence 9999999988886 33 23222 22 4899999999998
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.28 E-value=1.8e-11 Score=112.12 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=68.0
Q ss_pred CCceEEEecCeEEEeeecCCCCCC-------CCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHh
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVPVN-------GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIAT 399 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~~~-------~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~ 399 (483)
.+..+++++|.|++++|.+|.... .+. .+..|+.++++|+|.+|++ ++|+.|+|||+|||..++..+. .
T Consensus 144 ~~~~e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~-l~~~gv~~~~~G~I~vd~~--~~Ts~~~iyA~GDv~~~~~~~~-~ 219 (240)
T d1feca1 144 SAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQ-LEKAGVEVAKNGAIKVDAY--SKTNVDNIYAIGDVTDRVMLTP-V 219 (240)
T ss_dssp SCEEEEEEEEEEEECCCEEECCCCSBEESCTTSC-GGGGTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGCSCCCHH-H
T ss_pred ccceEEEecceEEEecCCceeEccccccccCCCC-ccccCeEECCCCcEEcCcc--cCcCCCCEEEEEECCCCccchh-h
Confidence 455678999999999999986421 111 2466889999999999997 8899999999999988776665 7
Q ss_pred hHHHHHHHHHHHHH
Q 011535 400 NLYCAEETVASISE 413 (483)
Q Consensus 400 a~~~g~~~a~~I~~ 413 (483)
|+.+|+.+|++|..
T Consensus 220 A~~eg~~aa~~~~~ 233 (240)
T d1feca1 220 AINEGAAFVDTVFA 233 (240)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.28 E-value=3.7e-12 Score=122.93 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=76.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccC--------------------------------
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA-------------------------------- 65 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~-------------------------------- 65 (483)
+.|+|+|||||+|||+||..|++.+...+|+||||++.+||.+.+.-.
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 82 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 82 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence 468999999999999999999987744699999999999887643110
Q ss_pred ------------------------CCCCChHHHHHHHHHHHhcCCeEEEeCeEEce--------EEEeccee-------e
Q 011535 66 ------------------------PDHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSELR-------Q 106 (483)
Q Consensus 66 ------------------------p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~--------~~~~~~~~-------~ 106 (483)
+.++...++..++...++..+..+++++.|.. .+++.+.. .
T Consensus 83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~ 162 (335)
T d2gv8a1 83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD 162 (335)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEE
Confidence 11233456777788777777777888877632 23333221 2
Q ss_pred ccCEEEEccCCC-CCCCCCCC
Q 011535 107 LYHVVVLAYGAE-SDRALGIP 126 (483)
Q Consensus 107 ~yd~vvlAtG~~-~~~~~~ip 126 (483)
.||+||+|||.. .|..+.++
T Consensus 163 ~~d~VI~AtG~~s~p~~~~~~ 183 (335)
T d2gv8a1 163 IFDAVSICNGHYEVPYTGYLY 183 (335)
T ss_dssp EESEEEECCCSSSSBCCCBCC
T ss_pred EeeEEEEcccccccceecccc
Confidence 489999999973 34444443
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=9.8e-12 Score=101.58 Aligned_cols=122 Identities=18% Similarity=0.323 Sum_probs=88.9
Q ss_pred CCCCCCCCC---CCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHH
Q 011535 121 RALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (483)
Q Consensus 121 ~~~~ipg~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~ 197 (483)
+.+++||++ .+||..+..... .+.++|+|+|||+|++|+|.|..|++
T Consensus 2 R~L~ipge~~~~gkGV~yca~cD~-------------~~~~gk~V~VvGgG~sA~~~A~~L~~----------------- 51 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPHCDG-------------PLFKGKRVAVIGGGNSGVEAAIDLAG----------------- 51 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHHHHG-------------GGGBTCEEEEECCSHHHHHHHHHHHT-----------------
T ss_pred CcCCCCCHHHhcCCCEEEEEecCh-------------hhcCCceEEEEeCCHHHHHHHHhhhc-----------------
Confidence 567899977 456665432211 12378999999999999999999986
Q ss_pred HhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCC
Q 011535 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM 277 (483)
Q Consensus 198 l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~ 277 (483)
-+++|+|++|++.+.. . . ...+.+.
T Consensus 52 ----~a~~V~li~r~~~~~~--~----------------------------~----------~~~~~~~----------- 76 (126)
T d1fl2a2 52 ----IVEHVTLLEFAPEMKA--D----------------------------Q----------VLQDKLR----------- 76 (126)
T ss_dssp ----TBSEEEEECSSSSCCS--C----------------------------H----------HHHHHHH-----------
T ss_pred ----cCCceEEEeccccccc--c----------------------------c----------ccccccc-----------
Confidence 5789999999975421 0 0 0112221
Q ss_pred CCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 278 ~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
...+|++++++.+.++. + +++.++++++.+. .+++.+++++|.|+.++|.
T Consensus 77 -~~~~I~v~~~~~v~~i~--G-~~~~v~~v~l~~~-------------~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 77 -SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR-------------VSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp -TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEET-------------TTCCEEEEECSEEEECSCE
T ss_pred -cccceeEEcCcceEEEE--c-cccceeeEEEEEC-------------CCCCEEEEECCEEEEEeCC
Confidence 14579999999999998 6 4567999988762 2677789999999999984
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.25 E-value=1.2e-11 Score=111.70 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=60.5
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccC-----CCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDN-----HKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAE 405 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~-----~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~ 405 (483)
.++.+|.+|+|||.+|..++..+... ..++.+ ++|.+.+|+. ++|+.|+|||+|||..++.... .|..+|.
T Consensus 131 ~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~-~~g~i~vd~~--~~T~~~~I~A~GDv~~~~~l~~-~a~~~g~ 206 (220)
T d1lvla1 131 QRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKM-NGAAIAIDER--CQTSMHNVWAIGDVAGEPMLAH-RAMAQGE 206 (220)
T ss_dssp EEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCE-ETTEECCCTT--CBCSSTTEEECGGGGCSSCCHH-HHHHHHH
T ss_pred eeEeeceeeEcCCCCcccccccccccCCcceeeehhh-cCCcccccch--hhcCCCCEEEEEEeCCcccchh-hhhhhHH
Confidence 58999999999999987654322222 222333 3688999987 8899999999999988877665 7999999
Q ss_pred HHHHHHH
Q 011535 406 ETVASIS 412 (483)
Q Consensus 406 ~~a~~I~ 412 (483)
.+|++|+
T Consensus 207 ~~a~~i~ 213 (220)
T d1lvla1 207 MVAEIIA 213 (220)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998874
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=2.7e-11 Score=98.49 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .| .+||++.|++.+...|. +++
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~--------------------lG-~~Vtii~~~~~~l~~~d-~ei------------- 66 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSR--------------------LG-SKVTVVEFQPQIGASMD-GEV------------- 66 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSSSSSC-HHH-------------
T ss_pred CCCeEEEECCCchHHHHHHHHHh--------------------hC-cceeEEEeccccchhhh-hhh-------------
Confidence 35899999999999999999986 44 58999999987654332 112
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
...+.+.+. ++||++++++.+.++... +++....+++.+
T Consensus 67 --------------------~~~l~~~l~-------------~~GV~i~~~~~v~~v~~~--~~~~~v~~~~~~------ 105 (122)
T d1v59a2 67 --------------------AKATQKFLK-------------KQGLDFKLSTKVISAKRN--DDKNVVEIVVED------ 105 (122)
T ss_dssp --------------------HHHHHHHHH-------------HTTCEEECSEEEEEEEEE--TTTTEEEEEEEE------
T ss_pred --------------------HHHHHHHHH-------------hccceEEeCCEEEEEEEe--CCCcEEEEEEEe------
Confidence 222223333 679999999999999732 355444455443
Q ss_pred CCCceeeccCCceEEEecCeEEEe
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKS 341 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a 341 (483)
+ .+++.++++||.|++|
T Consensus 106 --~-----~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 106 --T-----KTNKQENLEAEVLLVA 122 (122)
T ss_dssp --T-----TTTEEEEEEESEEEEC
T ss_pred --C-----CCCCeEEEEeCEEEEC
Confidence 1 1566789999999976
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.24 E-value=3.8e-11 Score=97.12 Aligned_cols=116 Identities=11% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEE
Q 011535 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (483)
Q Consensus 128 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~ 207 (483)
.|.+.++++.++... + ..+++++|||+|++|+|+|..|++ .| .+|+
T Consensus 4 ~d~~~v~~s~~~l~l------------~-~~p~~i~IiG~G~ig~E~A~~l~~--------------------~G-~~Vt 49 (119)
T d3lada2 4 VDQDVIVDSTGALDF------------Q-NVPGKLGVIGAGVIGLELGSVWAR--------------------LG-AEVT 49 (119)
T ss_dssp CCSSSEEEHHHHTSC------------S-SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEE
T ss_pred CCCCEEEchhHhhCc------------c-cCCCeEEEECCChHHHHHHHHHHH--------------------cC-CceE
Confidence 345678887776521 1 146899999999999999999986 45 4799
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEee
Q 011535 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (483)
Q Consensus 208 li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~ 287 (483)
++.|++.+...+. +++ .+.+.+.+. +.||++++
T Consensus 50 iv~~~~~ll~~~d-~ei---------------------------------~~~l~~~l~-------------~~Gv~i~~ 82 (119)
T d3lada2 50 VLEAMDKFLPAVD-EQV---------------------------------AKEAQKILT-------------KQGLKILL 82 (119)
T ss_dssp EEESSSSSSTTSC-HHH---------------------------------HHHHHHHHH-------------HTTEEEEE
T ss_pred EEEeecccCCccc-chh---------------------------------HHHHHHHHH-------------hcCceeec
Confidence 9999987654332 111 122223333 67999999
Q ss_pred cCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee
Q 011535 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 288 ~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
++.+.++. . .++.+ .+++.. .+..++++||.||+|+|
T Consensus 83 ~~~v~~i~--~-~~~~v-~v~~~~---------------~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 83 GARVTGTE--V-KNKQV-TVKFVD---------------AEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp TCEEEEEE--E-CSSCE-EEEEES---------------SSEEEEEEESEEEECSC
T ss_pred CcEEEEEE--E-eCCEE-EEEEEE---------------CCCCEEEECCEEEEeeC
Confidence 99999998 3 23322 233332 23446899999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.24 E-value=1.7e-11 Score=99.82 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=79.7
Q ss_pred CCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCcc
Q 011535 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (483)
Q Consensus 125 ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~ 204 (483)
|||.+++++++.+.+.....- .+ ... ...+++|+|||+|++|+|+|..|++ .+ .
T Consensus 1 IPG~d~~~v~~~~~~~da~~i-~~---~~~-~~~~k~vvViGgG~iG~E~A~~l~~--------------------~g-~ 54 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKL-KQ---KTV-DPEVNNVVVIGSGYIGIEAAEAFAK--------------------AG-K 54 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHH-HH---HHT-CTTCCEEEEECCSHHHHHHHHHHHH--------------------TT-C
T ss_pred CcCCCCCCeEEeCCHHHHHHH-HH---Hhh-ccCCCEEEEECChHHHHHHHHHhhc--------------------cc-e
Confidence 689999999875543321100 00 000 1156899999999999999999986 44 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEE
Q 011535 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (483)
Q Consensus 205 ~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~ 284 (483)
+||++.+.+.+...+..+++ .+.+.+.+. ++||+
T Consensus 55 ~Vtlie~~~~~l~~~~d~~~---------------------------------~~~~~~~l~-------------~~gv~ 88 (123)
T d1nhpa2 55 KVTVIDILDRPLGVYLDKEF---------------------------------TDVLTEEME-------------ANNIT 88 (123)
T ss_dssp EEEEEESSSSTTTTTCCHHH---------------------------------HHHHHHHHH-------------TTTEE
T ss_pred EEEEEEecCcccccccchhh---------------------------------HHHHHHHhh-------------cCCeE
Confidence 79999998765432221111 122223332 78999
Q ss_pred EeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEee
Q 011535 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (483)
Q Consensus 285 ~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~ 342 (483)
+++++.+.++. . ++.+..+ +. +| .+++||+||+|+
T Consensus 89 ~~~~~~v~~i~--~--~~~~~~v-~~----------------dg--~~i~~D~vi~aI 123 (123)
T d1nhpa2 89 IATGETVERYE--G--DGRVQKV-VT----------------DK--NAYDADLVVVAV 123 (123)
T ss_dssp EEESCCEEEEE--C--SSBCCEE-EE----------------SS--CEEECSEEEECS
T ss_pred EEeCceEEEEE--c--CCCEEEE-Ee----------------CC--CEEECCEEEEEC
Confidence 99999999997 4 5555433 11 22 379999999985
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.7e-11 Score=98.78 Aligned_cols=97 Identities=12% Similarity=0.255 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .| .+||++.|.+.+...+.
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~--------------------~G-~~Vtlve~~~~~l~~~d----------------- 61 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVING--------------------LG-AKTHLFEMFDAPLPSFD----------------- 61 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSSTTSC-----------------
T ss_pred CCCEEEEECCChhhHHHHHHhhc--------------------cc-cEEEEEeecchhhhhcc-----------------
Confidence 35899999999999999999986 45 48999999986543322
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.+.+++.+.+. ++||++++++.+.++. .++++.+. +++.
T Consensus 62 -----------------~~~~~~~~~~l~-------------~~GV~~~~~~~v~~i~--~~~~~~~~-v~~~------- 101 (116)
T d1gesa2 62 -----------------PMISETLVEVMN-------------AEGPQLHTNAIPKAVV--KNTDGSLT-LELE------- 101 (116)
T ss_dssp -----------------HHHHHHHHHHHH-------------HHSCEEECSCCEEEEE--ECTTSCEE-EEET-------
T ss_pred -----------------hhhHHHHHHHHH-------------HCCCEEEeCCEEEEEE--EcCCcEEE-EEEC-------
Confidence 122233344444 6799999999999987 31344332 3322
Q ss_pred CCCceeeccCCceEEEecCeEEEeee
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
+| +++++|+||+|+|
T Consensus 102 ---------~g--~~~~~D~vi~a~G 116 (116)
T d1gesa2 102 ---------DG--RSETVDCLIWAIG 116 (116)
T ss_dssp ---------TS--CEEEESEEEECSC
T ss_pred ---------CC--CEEEcCEEEEecC
Confidence 22 4899999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.22 E-value=3.8e-11 Score=96.71 Aligned_cols=115 Identities=15% Similarity=0.278 Sum_probs=76.3
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|+|||.+ .++++.++.. +..+++|+|||||++|+|+|..|++ .+
T Consensus 2 P~IpG~e--~~~ts~~~~~--------------l~~p~~v~IiGgG~iG~E~A~~l~~--------------------~g 45 (117)
T d1onfa2 2 PPVKGIE--NTISSDEFFN--------------IKESKKIGIVGSGYIAVELINVIKR--------------------LG 45 (117)
T ss_dssp CSCTTGG--GCEEHHHHTT--------------CCCCSEEEEECCSHHHHHHHHHHHT--------------------TT
T ss_pred cccCCHh--HcCchhHHhc--------------cCCCCEEEEECCchHHHHHHHHHHh--------------------cc
Confidence 5788864 4556555431 2246899999999999999999986 34
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+||++.|.+.+...|. +++ ...+.+.|. ++|
T Consensus 46 -~~Vtlv~~~~~il~~~d-~~~---------------------------------~~~~~~~l~-------------~~g 77 (117)
T d1onfa2 46 -IDSYIFARGNRILRKFD-ESV---------------------------------INVLENDMK-------------KNN 77 (117)
T ss_dssp -CEEEEECSSSSSCTTSC-HHH---------------------------------HHHHHHHHH-------------HTT
T ss_pred -ccceeeehhcccccccc-HHH---------------------------------HHHHHHHHH-------------hCC
Confidence 58999999987654443 222 222223333 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEE-ecCeEEEee
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL-DCGMVLKSI 342 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i-~~D~vi~a~ 342 (483)
|++++++.+.++. ..+++.+ .+++. +|+ ++ .+|.||||+
T Consensus 78 V~i~~~~~v~~i~--~~~~~~~-~v~~~----------------~G~--~~~~~D~Vi~AI 117 (117)
T d1onfa2 78 INIVTFADVVEIK--KVSDKNL-SIHLS----------------DGR--IYEHFDHVIYCV 117 (117)
T ss_dssp CEEECSCCEEEEE--ESSTTCE-EEEET----------------TSC--EEEEESEEEECC
T ss_pred CEEEECCEEEEEE--EcCCCeE-EEEEC----------------CCC--EEEeCCEEEEeC
Confidence 9999999999997 3134533 23222 233 44 589999985
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.22 E-value=4.5e-12 Score=103.28 Aligned_cols=120 Identities=17% Similarity=0.240 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 120 ~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
++.|+|||.+ ++++.+.+...-. .+ ..+..+++++|||||++|+|+|..|.+
T Consensus 2 ~r~p~ipG~e--~~~t~~~~~d~~~-l~------~~~~~~~~vvIiGgG~iG~E~A~~l~~------------------- 53 (122)
T d1xhca2 2 AREPQIKGKE--YLLTLRTIFDADR-IK------ESIENSGEAIIIGGGFIGLELAGNLAE------------------- 53 (122)
T ss_dssp ECCCCSBTGG--GEECCCSHHHHHH-HH------HHHHHHSEEEEEECSHHHHHHHHHHHH-------------------
T ss_pred CCCcCCCCcc--ceEccCCHHHHHH-HH------HHhhcCCcEEEECCcHHHHHHHHHhhc-------------------
Confidence 5678899964 4555444321100 00 001135899999999999999999986
Q ss_pred cCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011535 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~ 279 (483)
.+ .+||++.|++.+. +|. + .+.+.+.+.|.
T Consensus 54 -~g-~~Vtlv~~~~~l~-~~d-~---------------------------------~~~~~~~~~l~------------- 83 (122)
T d1xhca2 54 -AG-YHVKLIHRGAMFL-GLD-E---------------------------------ELSNMIKDMLE------------- 83 (122)
T ss_dssp -TT-CEEEEECSSSCCT-TCC-H---------------------------------HHHHHHHHHHH-------------
T ss_pred -cc-ceEEEEecccccc-CCC-H---------------------------------HHHHHHHHHHH-------------
Confidence 34 5799999987653 232 1 12222333333
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
++||+++++..+.++. . ++ + +. ++ .++++|+||||+|.
T Consensus 84 ~~GV~~~~~~~v~~~~--~--~~----v-~~----------------~~--~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 84 ETGVKFFLNSELLEAN--E--EG----V-LT----------------NS--GFIEGKVKICAIGI 121 (122)
T ss_dssp HTTEEEECSCCEEEEC--S--SE----E-EE----------------TT--EEEECSCEEEECCE
T ss_pred HCCcEEEeCCEEEEEe--C--CE----E-Ee----------------CC--CEEECCEEEEEEEe
Confidence 6799999999998886 3 32 1 11 12 37999999999995
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.20 E-value=5e-10 Score=106.93 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=75.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee-cCCCC---------C
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG-YKSVP---------V 349 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G-~~~~~---------~ 349 (483)
++|+++++++.+.+++ .+++++|.++...+. .+....|.++.||+||| |..+. .
T Consensus 164 ~~gv~i~~~t~v~~li--~d~~G~V~Gv~~~~~--------------~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~ 227 (322)
T d1d4ca2 164 KRGTDIRLNSRVVRIL--EDASGKVTGVLVKGE--------------YTGYYVIKADAVVIAAGGFAKNNERVSKYDPKL 227 (322)
T ss_dssp HTTCEEETTEEEEEEE--CCSSSCCCEEEEEET--------------TTEEEEEECSEEEECCCCCTTCHHHHHHHCGGG
T ss_pred hcCceEEEeeeccccc--ccccccccceEEEee--------------cccEEEEeCCeEEEcCCCcccCHHHHHhhCccc
Confidence 5689999999999987 435788988876541 23345799999999998 22111 0
Q ss_pred CCC-----Cc------------------cCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcch-------hHh
Q 011535 350 NGL-----PF------------------DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI-------IAT 399 (483)
Q Consensus 350 ~~l-----~~------------------~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~-------~~~ 399 (483)
..+ |. .+..++..+..+.+..+. ..+.+|||||+|+|+.|-.|. +..
T Consensus 228 ~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~---~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e 304 (322)
T d1d4ca2 228 KGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEK---TGKPITGLYAAGEVTGGVHGANRLGGNAISD 304 (322)
T ss_dssp TTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTT---TSSEEEEEEECGGGBCSSSTTSCCTTHHHHH
T ss_pred ccccccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECC---CCCEeCceEEchhhcCCccccccchhhHHHH
Confidence 000 00 012244556667776655 458899999999997543221 224
Q ss_pred hHHHHHHHHHHHHHHHh
Q 011535 400 NLYCAEETVASISEDLE 416 (483)
Q Consensus 400 a~~~g~~~a~~I~~~l~ 416 (483)
++--|+.++.+.+++.+
T Consensus 305 ~~v~g~~ag~~aa~~~~ 321 (322)
T d1d4ca2 305 IVTYGRIAGASAAKFAK 321 (322)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45557777777776643
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.18 E-value=6.7e-11 Score=95.46 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=78.2
Q ss_pred CCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC
Q 011535 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (483)
Q Consensus 123 ~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~ 202 (483)
|++|+.+ .++++.++... + ..+++++|||||++|+|+|..|.+ .|
T Consensus 1 P~~~~~~--~i~~s~~~l~~------------~-~~p~~v~IiGgG~ig~E~A~~l~~--------------------~G 45 (117)
T d1ebda2 1 PNFKFSN--RILDSTGALNL------------G-EVPKSLVVIGGGYIGIELGTAYAN--------------------FG 45 (117)
T ss_dssp TTBCCCS--SEECHHHHHTC------------S-SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CcCCCCC--CEEChhHhhCh------------h-hcCCeEEEECCCccceeeeeeecc--------------------cc
Confidence 3556553 56777665521 0 146899999999999999999986 45
Q ss_pred ccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcce
Q 011535 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (483)
Q Consensus 203 ~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~ 282 (483)
.+||++.|++.+...|.. .+.+.+.+.|. ++|
T Consensus 46 -~~Vtlve~~~~il~~~d~----------------------------------~~~~~l~~~l~-------------~~G 77 (117)
T d1ebda2 46 -TKVTILEGAGEILSGFEK----------------------------------QMAAIIKKRLK-------------KKG 77 (117)
T ss_dssp -CEEEEEESSSSSSTTSCH----------------------------------HHHHHHHHHHH-------------HTT
T ss_pred -cEEEEEEecceecccccc----------------------------------hhHHHHHHHHH-------------hcC
Confidence 579999999876544331 12222233333 679
Q ss_pred EEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEe
Q 011535 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKS 341 (483)
Q Consensus 283 i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a 341 (483)
|+++++..+.++. . .++.+ .+.+.. +|+.++++||.||++
T Consensus 78 I~i~~~~~v~~i~--~-~~~~~-~v~~~~---------------~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 78 VEVVTNALAKGAE--E-REDGV-TVTYEA---------------NGETKTIDADYVLVT 117 (117)
T ss_dssp CEEEESEEEEEEE--E-ETTEE-EEEEEE---------------TTEEEEEEESEEEEC
T ss_pred CEEEcCCEEEEEE--E-cCCEE-EEEEEe---------------CCCEEEEEeEEEEEC
Confidence 9999999999997 3 23322 233322 456678999999975
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.1e-11 Score=97.84 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEE
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~ 236 (483)
.++|+|+|||+|++|+|.|..|.+ -+++|+++.|++.+.. .
T Consensus 25 ~~~k~V~VvGgGdsA~e~A~~L~~---------------------~a~~V~li~r~~~~~~--~---------------- 65 (126)
T d1trba2 25 YRNQKVAVIGGGNTAVEEALYLSN---------------------IASEVHLIHRRDGFRA--E---------------- 65 (126)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTT---------------------TSSEEEEECSSSSCCC--C----------------
T ss_pred hCCCEEEEECCCHHHHHHHHHHhh---------------------cCCcEEEEeecccccc--h----------------
Confidence 378999999999999999999985 5689999999975421 0
Q ss_pred eccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeC
Q 011535 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (483)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~ 316 (483)
+... +.+.+... ..++.+++++.+.++. + ++..+++|++.+++
T Consensus 66 ------------------~~~~----~~~~~~~~---------~~~i~~~~~~~v~~i~--G-~~~~v~~v~l~~~~--- 108 (126)
T d1trba2 66 ------------------KILI----KRLMDKVE---------NGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ--- 108 (126)
T ss_dssp ------------------HHHH----HHHHHHHH---------TSSEEEECSCEEEEEE--E-CSSSEEEEEEECCT---
T ss_pred ------------------hHHH----HHHHHhhc---------ccceeEecceEEEEEE--C-CCCceEEEEEEECC---
Confidence 1111 22222211 6789999999999998 6 45569999887631
Q ss_pred CCCCceeeccCCceEEEecCeEEEeee
Q 011535 317 GGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
..++.+++++|.||+++|
T Consensus 109 ---------~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 109 ---------NSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp ---------TCCCCEEEECSEEEECSC
T ss_pred ---------CCceEEEEECCEEEEEeC
Confidence 122346899999999987
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=8.9e-11 Score=100.53 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcC
Q 011535 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181 (483)
Q Consensus 120 ~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~ 181 (483)
|+.|+|||.++++|+++.++.. +. ...+++|+|||||++|+|+|..+.+.
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~L~---~~---------~~~gkrVvVIGgG~~g~d~a~~~~r~ 51 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDVLR---DK---------APVGNKVAIIGCGGIGFDTAMYLSQP 51 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHHHT---SC---------CCCCSEEEEECCHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCeEEHHHHhh---Cc---------cccCCceEEEcCchhHHHHHHHHHHc
Confidence 6788999999999999887652 11 12689999999999999999999973
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.15 E-value=2.2e-11 Score=115.09 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=81.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCC---------------------------CCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP---------------------------DHP 69 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p---------------------------~~~ 69 (483)
....+|+|||||++||++|..|.+.+ ++|+|||+.+.+||.+++...| .++
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p 82 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA 82 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccC
Confidence 35679999999999999999999999 9999999999999976432111 123
Q ss_pred ChHHHHHHHHHHHhcCCe--EEEeCeEEce----------EEEeccee-eccCEEEEccCC-CCCCCCCCCCCC
Q 011535 70 ETKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED 129 (483)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~----------~~~~~~~~-~~yd~vvlAtG~-~~~~~~~ipg~~ 129 (483)
..+++..++..++++.++ .+.+++.|.. .+.+.+.. ..+|+||+|||. +.+..+.+++.+
T Consensus 83 ~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 83 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred ccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccc
Confidence 456788889999988876 4777776632 23443332 469999999996 345555565554
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.9e-10 Score=100.30 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=64.3
Q ss_pred EEEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCc-chhHhhHHHHHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT-GIIATNLYCAEETVA 409 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~-~~~~~a~~~g~~~a~ 409 (483)
.++.++.++.++|..++.. .....++..+..|.+.++.. .+|+.|+||++|||...+. ..+ .|+.+|..+|.
T Consensus 100 ~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~g~i~v~~~--~~t~~~gv~a~gd~~~~~~~~~v-va~g~G~~aA~ 172 (184)
T d1fl2a1 100 AVLKARSIIVATGAKLPNT----NWLEGAVERNRMGEIIIDAK--CETNVKGVFAAGDCTTVPYKQII-IATGEGAKASL 172 (184)
T ss_dssp CEEEEEEEEECCCEEEESC----GGGTTTSCBCTTSCBCCCTT--CBCSSTTEEECSTTBSCSSCCHH-HHHHHHHHHHH
T ss_pred eeeeccccccccccccccc----ccccccccccccceeccCCc--eeeeCCCEEEEeeecCcccCCcE-EEEECcHHHHH
Confidence 4789999999999876542 22344566777899988887 7899999999999987664 344 79999999999
Q ss_pred HHHHHHhcC
Q 011535 410 SISEDLEQG 418 (483)
Q Consensus 410 ~I~~~l~~~ 418 (483)
++..+|...
T Consensus 173 ~~~~~l~~~ 181 (184)
T d1fl2a1 173 SAFDYLIRT 181 (184)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhhc
Confidence 999998754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.14 E-value=1.2e-10 Score=93.81 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||||++|+|+|..|.+ +.. ...+|+++.|.+.+...|.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~-----------------~~~-~g~~Vtli~~~~~il~~~d----------------- 61 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNA-----------------YKA-RGGQVDLAYRGDMILRGFD----------------- 61 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHH-----------------HSC-TTCEEEEEESSSSSSTTSC-----------------
T ss_pred cCCeEEEECCChHHHHHHHHhHh-----------------hcc-cccccceeccccccccccc-----------------
Confidence 46899999999999999987764 111 2358999999887653332
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+...+.+.+.+. ++||+++++..+.++... +++. ..+.+.
T Consensus 62 -----------------~~~~~~~~~~l~-------------~~GI~v~~~~~v~~i~~~--~~g~-~~v~~~------- 101 (117)
T d1feca2 62 -----------------SELRKQLTEQLR-------------ANGINVRTHENPAKVTKN--ADGT-RHVVFE------- 101 (117)
T ss_dssp -----------------HHHHHHHHHHHH-------------HTTEEEEETCCEEEEEEC--TTSC-EEEEET-------
T ss_pred -----------------chhhHHHHHHHh-------------hCcEEEEcCCEEEEEEEC--CCCE-EEEEEC-------
Confidence 112222333343 779999999999999731 2442 233332
Q ss_pred CCCceeeccCCceEEEecCeEEEeeec
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
++++++||.||||+|.
T Consensus 102 -----------~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 102 -----------SGAEADYDVVMLAIGR 117 (117)
T ss_dssp -----------TSCEEEESEEEECSCE
T ss_pred -----------CCCEEEcCEEEEecCC
Confidence 2248999999999994
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.14 E-value=1.2e-10 Score=96.10 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .+ .+|+++.+.+.+......+++.
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~--------------------~g-~~Vtvie~~~~~l~~~~~~~~~------------ 80 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIK--------------------AN-MHVTLLDTAARVLERVTAPPVS------------ 80 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCHHHH------------
T ss_pred cCCEEEEECCchHHHHHHHHHHh--------------------hC-cceeeeeecccccccccchhhh------------
Confidence 57899999999999999999986 34 5799999998764332222221
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.+.+.+. ++||+++++..+.++.... +++.+..+.+.+
T Consensus 81 ---------------------~~~~~~~~-------------~~GV~i~~~~~v~~i~~~~-~~~~v~~v~~~~------ 119 (133)
T d1q1ra2 81 ---------------------AFYEHLHR-------------EAGVDIRTGTQVCGFEMST-DQQKVTAVLCED------ 119 (133)
T ss_dssp ---------------------HHHHHHHH-------------HHTCEEECSCCEEEEEECT-TTCCEEEEEETT------
T ss_pred ---------------------hhhhhccc-------------ccccEEEeCCeEEEEEEeC-CCceEEEEECCC------
Confidence 12223333 6799999999999987322 345555444422
Q ss_pred CCCceeeccCCceEEEecCeEEEeee
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
| ++++||+||+|+|
T Consensus 120 ----------G--~~i~~D~vi~a~G 133 (133)
T d1q1ra2 120 ----------G--TRLPADLVIAGIG 133 (133)
T ss_dssp ----------S--CEEECSEEEECCC
T ss_pred ----------C--CEEECCEEEEeeC
Confidence 2 3799999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.14 E-value=8.7e-11 Score=95.66 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCCCCCCCCCCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHh
Q 011535 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (483)
Q Consensus 120 ~~~~~ipg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~ 199 (483)
++.|.+|+ .+.++++.++... + ..+++++|||+|.+|+|+|..+.+
T Consensus 2 ~~lP~ip~--~~~i~ts~~~l~l------------~-~~p~~vvIiGgG~IG~E~A~~~~~------------------- 47 (125)
T d1ojta2 2 TKLPFIPE--DPRIIDSSGALAL------------K-EVPGKLLIIGGGIIGLEMGTVYST------------------- 47 (125)
T ss_dssp CCCSSCCC--CTTEECHHHHTTC------------C-CCCSEEEEESCSHHHHHHHHHHHH-------------------
T ss_pred CCCCCCCC--CCcEEcHHHhhCc------------c-ccCCeEEEECCCHHHHHHHHHhhc-------------------
Confidence 34456664 3467776665421 0 146899999999999999999886
Q ss_pred cCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCC
Q 011535 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (483)
Q Consensus 200 ~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~ 279 (483)
.| .+||++.+++.+...+. +++ . +.+.+...
T Consensus 48 -~G-~~Vtive~~~~il~~~d-~~~---------------------------------~----~~l~~~l~--------- 78 (125)
T d1ojta2 48 -LG-SRLDVVEMMDGLMQGAD-RDL---------------------------------V----KVWQKQNE--------- 78 (125)
T ss_dssp -HT-CEEEEECSSSSSSTTSC-HHH---------------------------------H----HHHHHHHG---------
T ss_pred -CC-CEEEEEEeeccccccch-hhH---------------------------------H----HHHHHHHH---------
Confidence 45 47999999987654332 111 1 22222222
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeec
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
++||++++++.+.++. . +++.+ .+.+.. ..+..++++||.|++|+|.
T Consensus 79 ~~gv~~~~~~~v~~v~--~-~~~g~-~v~~~~--------------~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 79 YRFDNIMVNTKTVAVE--P-KEDGV-YVTFEG--------------ANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp GGEEEEECSCEEEEEE--E-ETTEE-EEEEES--------------SSCCSSCEEESCEEECCCE
T ss_pred HcCcccccCcEEEEEE--E-cCCcE-EEEEEe--------------CCCCeEEEEcCEEEEecCC
Confidence 7899999999999997 3 23322 233332 1344458999999999994
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.13 E-value=8.4e-11 Score=94.81 Aligned_cols=99 Identities=18% Similarity=0.304 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||||++|+|+|..|.. |. ....+||++.|.+.+...|.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~-----------------l~-~~~~~Vtli~~~~~iL~~~d----------------- 63 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNA-----------------YK-PKDGQVTLCYRGEMILRGFD----------------- 63 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHH-----------------HC-CTTCEEEEEESSSSSSTTSC-----------------
T ss_pred cCCeEEEECCcHHHHHHHHHhhh-----------------cc-cCCcEEEEEeccchhhcccc-----------------
Confidence 46899999999999999987764 11 12248999999887653332
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.+.+.+.+.|+ ++||+++++..+.++... .++.+. ++++
T Consensus 64 -----------------~~~~~~l~~~l~-------------~~GV~v~~~~~v~~ie~~--~~~~~~-v~~~------- 103 (117)
T d1aoga2 64 -----------------HTLREELTKQLT-------------ANGIQILTKENPAKVELN--ADGSKS-VTFE------- 103 (117)
T ss_dssp -----------------HHHHHHHHHHHH-------------HTTCEEEESCCEEEEEEC--TTSCEE-EEET-------
T ss_pred -----------------hHHHHHHHHHHH-------------hcCcEEEcCCEEEEEEEc--CCCeEE-EEEC-------
Confidence 122223334443 779999999999999732 344432 3332
Q ss_pred CCCceeeccCCceEEEecCeEEEee
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSI 342 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~ 342 (483)
+| ++++||+||||+
T Consensus 104 ---------~G--~~i~~D~Vi~AI 117 (117)
T d1aoga2 104 ---------SG--KKMDFDLVMMAI 117 (117)
T ss_dssp ---------TS--CEEEESEEEECS
T ss_pred ---------CC--cEEEeCEEEEeC
Confidence 22 479999999985
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.13 E-value=5.6e-12 Score=117.02 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=33.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
++|+||||||||++||.++++.| .+|+|||+.. +||
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G--~~V~liE~~~-~GG 37 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGG 37 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC-CCC
Confidence 68999999999999999999999 9999999975 455
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.6e-10 Score=92.89 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=75.3
Q ss_pred hhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 7 ~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
+.++.......-+++|+|||||+.|+.+|..|++.| .+|+|+|+.+.+. |.+ .+++...+.+.+++.|
T Consensus 9 ~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~~l--------~~~--d~~~~~~~~~~l~~~G 76 (116)
T d1gesa2 9 IDSDGFFALPALPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PSF--DPMISETLVEVMNAEG 76 (116)
T ss_dssp BCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHS
T ss_pred CCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccc--cEEEEEeecchhh--------hhc--chhhHHHHHHHHHHCC
Confidence 344444455556789999999999999999999999 9999999998753 332 2467778888888889
Q ss_pred eEEEeCeEEce---------EEEeccee-eccCEEEEccC
Q 011535 87 CSFFGNVTLGS---------SVSLSELR-QLYHVVVLAYG 116 (483)
Q Consensus 87 v~~~~~~~v~~---------~~~~~~~~-~~yd~vvlAtG 116 (483)
++++.++.+.. .+.++++. ..+|.||+|||
T Consensus 77 V~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 77 PQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp CEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred CEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 99999987632 23444443 46999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=6.1e-11 Score=96.84 Aligned_cols=105 Identities=25% Similarity=0.260 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .+ .+||++.|++.+...|.
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~--------------------~G-~~Vtlv~~~~~~l~~~d----------------- 62 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSA--------------------LG-SKTSLMIRHDKVLRSFD----------------- 62 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCTTSC-----------------
T ss_pred cCCEEEEEcCCccHHHHHHHHhc--------------------CC-cEEEEEeeccccccchh-----------------
Confidence 35899999999999999999986 44 47999999987643332
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.+.+++.+.+. ++||++++++.+.++. .++++ + .+.+.. .
T Consensus 63 -----------------~~~~~~~~~~l~-------------~~Gv~i~~~~~v~~i~--~~~~g-~-~v~~~~-----~ 103 (125)
T d3grsa2 63 -----------------SMISTNCTEELE-------------NAGVEVLKFSQVKEVK--KTLSG-L-EVSMVT-----A 103 (125)
T ss_dssp -----------------HHHHHHHHHHHH-------------HTTCEEETTEEEEEEE--EETTE-E-EEEEEE-----C
T ss_pred -----------------hHHHHHHHHHHH-------------HCCCEEEeCCEEEEEE--EcCCe-E-EEEEEE-----c
Confidence 112223333443 6799999999999997 31232 1 121111 0
Q ss_pred CCCceeeccCCceEEEecCeEEEeee
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
..|+ .......++||.||||+|
T Consensus 104 ~~g~----~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 104 VPGR----LPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp CTTS----CCEEEEEEEESEEEECSC
T ss_pred cCCc----CcCccccccCCEEEEEeC
Confidence 1121 012234788999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.10 E-value=9.3e-11 Score=95.39 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCCCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEE
Q 011535 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (483)
Q Consensus 129 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~l 208 (483)
+..+++++.++...- ..+++++|||+|.+|+|+|..+.+ .| .+||+
T Consensus 8 d~~~v~ts~~~l~l~-------------~~p~~~viiG~G~iglE~A~~~~~--------------------~G-~~Vtv 53 (123)
T d1dxla2 8 DEKKIVSSTGALALS-------------EIPKKLVVIGAGYIGLEMGSVWGR--------------------IG-SEVTV 53 (123)
T ss_dssp CSSSEECHHHHTTCS-------------SCCSEEEESCCSHHHHHHHHHHHH--------------------HT-CEEEE
T ss_pred CCCeEEeHHHhhCcc-------------ccCCeEEEEccchHHHHHHHHHHh--------------------cC-CeEEE
Confidence 355677776654210 146899999999999999999986 45 58999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCeeEEeccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeec
Q 011535 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (483)
Q Consensus 209 i~r~~~~~~~f~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 288 (483)
+.|++.+...+.. .+...+.+.|. ++||+++++
T Consensus 54 i~~~~~~l~~~d~----------------------------------~~~~~l~~~l~-------------~~GI~i~~~ 86 (123)
T d1dxla2 54 VEFASEIVPTMDA----------------------------------EIRKQFQRSLE-------------KQGMKFKLK 86 (123)
T ss_dssp ECSSSSSSTTSCH----------------------------------HHHHHHHHHHH-------------HSSCCEECS
T ss_pred EEEccccCchhhh----------------------------------cchhhhhhhhh-------------cccceEEcC
Confidence 9999876433321 22222333443 679999999
Q ss_pred CCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEee
Q 011535 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (483)
Q Consensus 289 ~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~ 342 (483)
+.+.++. . .++.+ .+.+... ..++.++++||.|++|.
T Consensus 87 ~~v~~i~--~-~~~~~-~v~~~~~-------------~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 87 TKVVGVD--T-SGDGV-KLTVEPS-------------AGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEEEEEE--C-SSSSE-EEEEEES-------------SSCCCEEEEESEEECCC
T ss_pred CceEEEE--E-ccCeE-EEEEEEC-------------CCCeEEEEEcCEEEEcC
Confidence 9999997 3 22322 2333221 14455689999999873
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.10 E-value=5.4e-10 Score=91.24 Aligned_cols=98 Identities=17% Similarity=0.297 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEE
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~ 236 (483)
.++|+|+|||+|++|+|-|..|++ -+++|||+.|++.+.+ ..
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~---------------------~a~~V~li~r~~~~ra--~~--------------- 73 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTK---------------------YGSKVYIIHRRDAFRA--SK--------------- 73 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTT---------------------TSSEEEEECSSSSCCS--CH---------------
T ss_pred hCCCEEEEEcCchHHHHHHHHHhC---------------------CCCcEEEEEecccccc--ch---------------
Confidence 479999999999999999999985 6789999999986431 00
Q ss_pred eccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCC-CCceEEEEEeeeeee
Q 011535 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKTALK 315 (483)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~-~g~v~~v~~~~~~l~ 315 (483)
.+.+.+. ...+|.+++++.+.++. ++. .+.+.++++.+.
T Consensus 74 -----------------------~~~~~l~------------~~~nI~v~~~~~v~~i~--Gd~~~~~v~~v~l~~~--- 113 (130)
T d1vdca2 74 -----------------------IMQQRAL------------SNPKIDVIWNSSVVEAY--GDGERDVLGGLKVKNV--- 113 (130)
T ss_dssp -----------------------HHHHHHH------------TCTTEEEECSEEEEEEE--ESSSSSSEEEEEEEET---
T ss_pred -----------------------hhhhccc------------cCCceEEEeccEEEEEE--ccCCcccEEEEEEEEC---
Confidence 0112221 15679999999999998 521 246888887762
Q ss_pred CCCCCceeeccCCceEEEecCeEEEee
Q 011535 316 GGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (483)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~a~ 342 (483)
.+++.+++++|.|++++
T Consensus 114 ----------~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 114 ----------VTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp ----------TTCCEEEEECSEEEECS
T ss_pred ----------CCCCEEEEECCEEEEEC
Confidence 36777899999999875
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.09 E-value=4e-10 Score=91.18 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++++|||||+.|+.+|..|++++ .+|+|+|+.+.+. +. ...+++...+.+.++..|++++.+..+.
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~~l--------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 96 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVT 96 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEESCCEE
T ss_pred hcCCeEEEECcchhHHHHHHHhhccc--ceEEEEeeccccc--------cc-cCCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 35689999999999999999999999 9999999998753 21 1234677788888889999999998774
Q ss_pred e----EEEeccee-eccCEEEEccC
Q 011535 97 S----SVSLSELR-QLYHVVVLAYG 116 (483)
Q Consensus 97 ~----~~~~~~~~-~~yd~vvlAtG 116 (483)
. .+.+.++. ..+|.||+|+|
T Consensus 97 ~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 97 GSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp EEETTEEEETTSCEEECSEEEECSC
T ss_pred EEeCCEEEECCCCEEECCEEEEeeC
Confidence 2 35555554 46999999998
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.06 E-value=2.4e-11 Score=105.76 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc-cCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g-~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.|||+|||||++|+.+|..|.+.+++.+|+|||+.+.++...... ............ .........++.+..+..+..
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIK-HGYDGLRAHGIQVVHDSATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGE-ECSHHHHTTTEEEECCCEEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhh-hhhhhccccceeEeeeeeEee
Confidence 579999999999999999999999889999999987643221100 000000000110 011122345677777766532
Q ss_pred -----EEEeccee-eccCEEEEccCCCCCCCCCCCCC
Q 011535 98 -----SVSLSELR-QLYHVVVLAYGAESDRALGIPGE 128 (483)
Q Consensus 98 -----~~~~~~~~-~~yd~vvlAtG~~~~~~~~ipg~ 128 (483)
.+...+.. ..||+||+|||+ .+....+++.
T Consensus 81 ~~~~~~~~~~~~~~i~~D~li~atG~-~~~~~~i~~~ 116 (186)
T d1fcda1 81 DPDKKLVKTAGGAEFGYDRCVVAPGI-ELIYDKIEQR 116 (186)
T ss_dssp CTTTTEEEETTSCEEECSEEEECCCE-EECCTTSTEE
T ss_pred eeccceeecccceeeccceEEEEecc-ccchhhhhhh
Confidence 23333333 479999999998 4555555543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.05 E-value=2.9e-10 Score=91.24 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||||++|+|+|..|.+ .+ .+||++.|.+.+...|.
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~--------------------~g-~~Vtlve~~~~il~~~d----------------- 61 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRK--------------------LG-AQVSVVEARERILPTYD----------------- 61 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEECSSSSSSTTSC-----------------
T ss_pred CCCeEEEECCCHHHHHHHHHHhh--------------------cc-cceEEEeeecccccccc-----------------
Confidence 45899999999999999999986 34 47999999987654332
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+...+++.+.|. ++||++++++.+.++. ++. .....
T Consensus 62 -----------------~~~~~~l~~~l~-------------~~gV~i~~~~~V~~i~-----~~~---~~~~~------ 97 (115)
T d1lvla2 62 -----------------SELTAPVAESLK-------------KLGIALHLGHSVEGYE-----NGC---LLAND------ 97 (115)
T ss_dssp -----------------HHHHHHHHHHHH-------------HHTCEEETTCEEEEEE-----TTE---EEEEC------
T ss_pred -----------------chhHHHHHHHHH-------------hhcceEEcCcEEEEEc-----CCe---EEEEE------
Confidence 112223333443 6789999999888885 231 11111
Q ss_pred CCCceeeccCCceEEEecCeEEEeee
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
..++.++++||.||+|+|
T Consensus 98 --------~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 98 --------GKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp --------SSSCCCEECCSCEEECCC
T ss_pred --------cCCCeEEEEcCEEEEecC
Confidence 134456899999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.04 E-value=7.1e-10 Score=88.91 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=70.5
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCe
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
.....+++++|||||+.|+.+|..|++.+ .+|+|+|+.+.+. |.+ ..++...+.+.+++.|++++.++
T Consensus 16 ~~~~~p~~vvIiGgG~~G~E~A~~l~~~g--~~Vtlve~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~ 83 (115)
T d1lvla2 16 APKALPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PTY--DSELTAPVAESLKKLGIALHLGH 83 (115)
T ss_dssp CCSSCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHTCEEETTC
T ss_pred CcccCCCeEEEECCCHHHHHHHHHHhhcc--cceEEEeeecccc--------ccc--cchhHHHHHHHHHhhcceEEcCc
Confidence 44556789999999999999999999999 9999999998752 432 24577788888888899999998
Q ss_pred EEceE-----EEe-cce---eeccCEEEEccC
Q 011535 94 TLGSS-----VSL-SEL---RQLYHVVVLAYG 116 (483)
Q Consensus 94 ~v~~~-----~~~-~~~---~~~yd~vvlAtG 116 (483)
.+... +.. .+. ...+|.|++|+|
T Consensus 84 ~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 84 SVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 77421 111 111 246999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=9.8e-10 Score=88.97 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++++|||+|++|+|+|..|.+ .|. +|+|+.|+ ++...|.
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~--------------------lG~-~Vtii~~~-~~l~~~D----------------- 59 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAG--------------------IGL-DVTVMVRS-ILLRGFD----------------- 59 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESS-SSSTTSC-----------------
T ss_pred CCCeEEEECCCccHHHHHHHHhh--------------------cCC-eEEEEEec-hhhccCC-----------------
Confidence 45799999999999999999986 564 79999875 4433332
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
+.+.+.+.+.|. ++||++++++.+.++.... ++.-..+.+... .
T Consensus 60 -----------------~~~~~~l~~~l~-------------~~Gv~i~~~~~v~~~~~~~--~~~~~~~~v~~~---~- 103 (122)
T d1h6va2 60 -----------------QDMANKIGEHME-------------EHGIKFIRQFVPTKIEQIE--AGTPGRLKVTAK---S- 103 (122)
T ss_dssp -----------------HHHHHHHHHHHH-------------HTTEEEEESCEEEEEEEEE--CSTTCEEEEEEE---C-
T ss_pred -----------------HHHHHHHHHHHH-------------HCCCEEEECCEEEEEEEec--CCCccEEEEEEE---E-
Confidence 112222333333 7799999999999886322 221112222111 0
Q ss_pred CCCceeeccCCceEEEecCeEEEeee
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
..+++...++||.|++|+|
T Consensus 104 -------~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 104 -------TNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp -------TTSCEEEEEEESEEECCCC
T ss_pred -------CCCCcEEEEECCEEEEEeC
Confidence 1134556789999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.7e-10 Score=93.02 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
..++++|||||++|+|+|..|.+ ..+..+ .+|+++.+.+.......++++
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~----------------~~~~~g-~~Vt~i~~~~~~l~~~~~~~~------------- 85 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGR----------------KARALG-TEVIQLFPEKGNMGKILPEYL------------- 85 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHH----------------HHHHHT-CEEEEECSSSSTTTTTSCHHH-------------
T ss_pred cCCEEEEECCCHHHHHHHHHHHH----------------HHHhcC-CEEEEecccccCCcccCCHHH-------------
Confidence 46899999999999999999864 111223 479999998765432221111
Q ss_pred ccccccCCCCcHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCC
Q 011535 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (483)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~ 317 (483)
.+.+.+.+. ++||++++++.+.++. . +++.+ .+++.
T Consensus 86 --------------------~~~~~~~l~-------------~~GV~~~~~~~V~~i~--~-~~~~~-~v~l~------- 121 (137)
T d1m6ia2 86 --------------------SNWTMEKVR-------------REGVKVMPNAIVQSVG--V-SSGKL-LIKLK------- 121 (137)
T ss_dssp --------------------HHHHHHHHH-------------TTTCEEECSCCEEEEE--E-ETTEE-EEEET-------
T ss_pred --------------------HHHHHHHHH-------------hCCcEEEeCCEEEEEE--e-cCCEE-EEEEC-------
Confidence 222233333 7899999999999997 4 24433 23322
Q ss_pred CCCceeeccCCceEEEecCeEEEeeec
Q 011535 318 GPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (483)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a~G~ 344 (483)
++++++||+||||+|.
T Consensus 122 -----------~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 122 -----------DGRKVETDHIVAAVGL 137 (137)
T ss_dssp -----------TSCEEEESEEEECCCE
T ss_pred -----------CCCEEECCEEEEeecC
Confidence 2248999999999994
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.01 E-value=4.8e-09 Score=99.75 Aligned_cols=48 Identities=35% Similarity=0.455 Sum_probs=40.8
Q ss_pred hhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 10 ~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
+.....+....+|+|||+|+|||+||+.|++.+ .+|+|+||.+..+|-
T Consensus 10 ~~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~G--~~V~vlEK~~~~gG~ 57 (317)
T d1qo8a2 10 KAIAAGPSETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGGN 57 (317)
T ss_dssp HHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCTT
T ss_pred hhccCCCCCccCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCc
Confidence 344445556789999999999999999999999 999999999877654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.99 E-value=2.3e-09 Score=86.30 Aligned_cols=92 Identities=14% Similarity=0.293 Sum_probs=71.9
Q ss_pred ccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeC
Q 011535 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (483)
Q Consensus 13 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (483)
......+++++|||||+.|+.+|..|++.| .+|+++++.+.+- |. ...++...+.+.+++.|++|+.+
T Consensus 16 l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G--~~Vtiv~~~~~ll--------~~--~d~ei~~~l~~~l~~~Gv~i~~~ 83 (119)
T d3lada2 16 LDFQNVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLG 83 (119)
T ss_dssp TSCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEET
T ss_pred hCcccCCCeEEEECCChHHHHHHHHHHHcC--CceEEEEeecccC--------Cc--ccchhHHHHHHHHHhcCceeecC
Confidence 344556799999999999999999999999 9999999987642 43 24567888888998899999999
Q ss_pred eEEce--------EEEecce----eeccCEEEEccC
Q 011535 93 VTLGS--------SVSLSEL----RQLYHVVVLAYG 116 (483)
Q Consensus 93 ~~v~~--------~~~~~~~----~~~yd~vvlAtG 116 (483)
+.+.. .+++.+. ...+|.|++|+|
T Consensus 84 ~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 84 ARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp CEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred cEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 87632 2333222 235999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.99 E-value=1.5e-09 Score=89.39 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||++|+.+|..|++.+ .+|+++|+.+.+. +. ...+++...+.+.+++.|++++.++.+.
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g--~~Vtvie~~~~~l--------~~-~~~~~~~~~~~~~~~~~GV~i~~~~~v~ 101 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVL--------ER-VTAPPVSAFYEHLHREAGVDIRTGTQVC 101 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhC--cceeeeeeccccc--------cc-ccchhhhhhhhhcccccccEEEeCCeEE
Confidence 45689999999999999999999999 9999999998753 21 1234566777788888899999997653
Q ss_pred e-----------EEEeccee-eccCEEEEccC
Q 011535 97 S-----------SVSLSELR-QLYHVVVLAYG 116 (483)
Q Consensus 97 ~-----------~~~~~~~~-~~yd~vvlAtG 116 (483)
. .+.++++. ..+|.||+|+|
T Consensus 102 ~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 102 GFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 2 24455554 47999999998
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.98 E-value=7e-10 Score=102.09 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
.++|+|||||||||.||..|++++ .+|+|||+.+.+|
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G--~~V~vlEk~~~~G 40 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIG 40 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Confidence 479999999999999999999999 9999999998775
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.97 E-value=4.9e-09 Score=94.94 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=62.4
Q ss_pred CceEEEecCeEEEeeecCCCCCCC-------CCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhh
Q 011535 328 GEFEDLDCGMVLKSIGYKSVPVNG-------LPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (483)
Q Consensus 328 g~~~~i~~D~vi~a~G~~~~~~~~-------l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a 400 (483)
.....++++.+++++|.+|....+ +. ....++.++ +|+|.+|++ ++|+.|+|||+|||..++..+. .|
T Consensus 145 ~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~-~~~~gv~~~-~G~I~vde~--~~T~~~~iyAvGDv~~~~~l~~-~A 219 (238)
T d1aoga1 145 AVKERLETEHILLASGSWPHMPNGRSPRTKDLQ-LQNAGVMIK-NGGVQVDEY--SRTNVSNIYAIGDVTNRVMLTP-VA 219 (238)
T ss_dssp CEEEEEEBSCEEECCCEEECCCCCEEECCGGGC-GGGTTCCEE-TTEECCCTT--CBCSSTTEEECGGGGTSCCCHH-HH
T ss_pred cccccccccceeeecccccccccccccceeeec-ccccEEEEc-CCeEEecCC--eeeccCCEEEEEEecCCccchh-hH
Confidence 445688999999998888754221 11 134566665 899999998 8999999999999987776555 79
Q ss_pred HHHHHHHHHHHH
Q 011535 401 LYCAEETVASIS 412 (483)
Q Consensus 401 ~~~g~~~a~~I~ 412 (483)
+.+|+.+|++|+
T Consensus 220 ~~eg~~aa~~i~ 231 (238)
T d1aoga1 220 INEAAALVDTVF 231 (238)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999985
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=5.1e-09 Score=85.07 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=61.5
Q ss_pred hhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 8 ~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.++.......-+++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+- |.+ ..++...+.+.+++.|+
T Consensus 11 ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~~~~~l~~~Gv 78 (125)
T d3grsa2 11 TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL--------RSF--DSMISTNCTEELENAGV 78 (125)
T ss_dssp CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TTS--CHHHHHHHHHHHHHTTC
T ss_pred CHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCC--cEEEEEeeccccc--------cch--hhHHHHHHHHHHHHCCC
Confidence 34333344455689999999999999999999999 9999999987641 332 34677888888888999
Q ss_pred EEEeCeEEc
Q 011535 88 SFFGNVTLG 96 (483)
Q Consensus 88 ~~~~~~~v~ 96 (483)
+++.++.+.
T Consensus 79 ~i~~~~~v~ 87 (125)
T d3grsa2 79 EVLKFSQVK 87 (125)
T ss_dssp EEETTEEEE
T ss_pred EEEeCCEEE
Confidence 999998874
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.94 E-value=1.5e-09 Score=99.42 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=68.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee-------------------------------------
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR------------------------------------- 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~------------------------------------- 61 (483)
.++|+||||||||++||..|+++| ++|+|||+.+.+++...
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN 79 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhh
Confidence 579999999999999999999999 99999999987653110
Q ss_pred ----------ccc----------CCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce---------EEEeccee-eccCEE
Q 011535 62 ----------SGV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSLSELR-QLYHVV 111 (483)
Q Consensus 62 ----------~g~----------~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~---------~~~~~~~~-~~yd~v 111 (483)
+++ .|......++...+.+.+++.|++++.++.+.. .+.++++. ..+|+|
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v 159 (251)
T d2i0za1 80 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV 159 (251)
T ss_dssp HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred hHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeE
Confidence 000 011112234556666777778999998876532 12333332 468999
Q ss_pred EEccCCC
Q 011535 112 VLAYGAE 118 (483)
Q Consensus 112 vlAtG~~ 118 (483)
|+|||..
T Consensus 160 I~AtGg~ 166 (251)
T d2i0za1 160 VIAVGGK 166 (251)
T ss_dssp EECCCCS
T ss_pred EEccCCc
Confidence 9999973
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.92 E-value=4.8e-09 Score=84.24 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=72.8
Q ss_pred hhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcC-CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 8 ~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~-~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
.++........+++++|||||++|+.+|..+.+.. .+.+|+++++.+.+. |.+ .+++...+.+.+++.|
T Consensus 7 ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~G 76 (117)
T d1feca2 7 TSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------RGF--DSELRKQLTEQLRANG 76 (117)
T ss_dssp CHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------TTS--CHHHHHHHHHHHHHTT
T ss_pred chHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--------ccc--cchhhHHHHHHHhhCc
Confidence 34433345556789999999999999998776652 138999999987642 432 3467788888899999
Q ss_pred eEEEeCeEEce---------EEEeccee-eccCEEEEccC
Q 011535 87 CSFFGNVTLGS---------SVSLSELR-QLYHVVVLAYG 116 (483)
Q Consensus 87 v~~~~~~~v~~---------~~~~~~~~-~~yd~vvlAtG 116 (483)
++|+.++.+.. .+.++++. ..||.|++|+|
T Consensus 77 I~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 77 INVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp EEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 99999987632 24444444 46999999999
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=5.1e-09 Score=84.59 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=71.2
Q ss_pred hhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 7 ~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
+.+..+......+++++|||||+.|+.+|..|.+.| .+|+|+++++. .|.+ .+++...+.+.+++.|
T Consensus 8 ~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG--~~Vtii~~~~~---------l~~~--D~~~~~~l~~~l~~~G 74 (122)
T d1h6va2 8 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSIL---------LRGF--DQDMANKIGEHMEEHG 74 (122)
T ss_dssp BCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSS---------STTS--CHHHHHHHHHHHHHTT
T ss_pred EcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcC--CeEEEEEechh---------hccC--CHHHHHHHHHHHHHCC
Confidence 344444455556789999999999999999999999 99999987532 1332 3467788888999999
Q ss_pred eEEEeCeEEceE------------EEecce------eeccCEEEEccC
Q 011535 87 CSFFGNVTLGSS------------VSLSEL------RQLYHVVVLAYG 116 (483)
Q Consensus 87 v~~~~~~~v~~~------------~~~~~~------~~~yd~vvlAtG 116 (483)
++|+.++.+... ++.... ...||.|++|+|
T Consensus 75 v~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 75 IKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999766321 121111 124899999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.91 E-value=4.4e-09 Score=85.30 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=73.7
Q ss_pred hhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 8 ~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.+.........+++++|||||+.|+.+|..+++.| .+|+++|+.+.+- |. ...++...+.+.++..|+
T Consensus 15 ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G--~~Vtive~~~~il--------~~--~d~~~~~~l~~~l~~~gv 82 (125)
T d1ojta2 15 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFD 82 (125)
T ss_dssp CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEE
T ss_pred cHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCC--CEEEEEEeecccc--------cc--chhhHHHHHHHHHHHcCc
Confidence 33333345556789999999999999999999999 9999999987642 33 234678888888999999
Q ss_pred EEEeCeEEce--------EEEecc--e---eeccCEEEEccC
Q 011535 88 SFFGNVTLGS--------SVSLSE--L---RQLYHVVVLAYG 116 (483)
Q Consensus 88 ~~~~~~~v~~--------~~~~~~--~---~~~yd~vvlAtG 116 (483)
+++.++.+.. .+.+.. + ...+|.|++|+|
T Consensus 83 ~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 83 NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp EEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred ccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 9999987632 222221 1 246999999999
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=3.4e-09 Score=85.74 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
.++++|||||+.|+.+|..|++.+ .+|+|+++.+.+. + ..+++...+.+.+++.|++++.++.+..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~~l~--------~---~d~~~~~~~~~~l~~~GV~~~~~~~v~~~ 98 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA 98 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred CCcEEEECCcHHHHHHHHHhhccc--ceEEEEecccccc--------C---CCHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence 479999999999999999999999 9999999988652 1 1245667778888888999999987632
Q ss_pred ---EEEecceeeccCEEEEccCC
Q 011535 98 ---SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 ---~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+..+.....+|.||+|+|.
T Consensus 99 ~~~~v~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 99 NEEGVLTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp CSSEEEETTEEEECSCEEEECCE
T ss_pred eCCEEEeCCCEEECCEEEEEEEe
Confidence 22233344579999999994
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.3e-08 Score=90.96 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=60.6
Q ss_pred EEEecCeEEEeeecCCCCCCCCCcc-----CCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHH
Q 011535 331 EDLDCGMVLKSIGYKSVPVNGLPFD-----NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAE 405 (483)
Q Consensus 331 ~~i~~D~vi~a~G~~~~~~~~l~~~-----~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~ 405 (483)
..+.++.+++|||.+|.. +.+|.. +..++.++++|++.+|.. ++|+.|+||++||+..+..-.. .+.+.|.
T Consensus 126 ~~~~~~~~iiatG~~p~i-p~ip~~~~l~l~~~gv~~~~~~~i~~d~~--~~t~~~~i~~iG~g~~g~ela~-~~~~~G~ 201 (217)
T d1gesa1 126 ETITADHILIATGGRPSH-PREPANDNINLEAAGVKTNEKGYIVVDKY--QNTNIEGIYAVGDNTGAVELTP-VAVAAGR 201 (217)
T ss_dssp EEEEEEEEEECCCEEECC-CEEESCTTSCHHHHTCCBCTTSCBCCCTT--SBCSSTTEEECSGGGTSCCCHH-HHHHHHH
T ss_pred ceeeeeeeeeecCccccC-CCCCCcCCcccccccEEEcCCccEeeCch--hccCCCcEEEECCCccHHHHHH-HHHHHHH
Confidence 478999999999988752 222221 234677888999999887 7899999999999988776555 6888999
Q ss_pred HHHHHHHH
Q 011535 406 ETVASISE 413 (483)
Q Consensus 406 ~~a~~I~~ 413 (483)
.+++++..
T Consensus 202 ~v~~~~~~ 209 (217)
T d1gesa1 202 RLSERLFN 209 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 88876543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=3.4e-09 Score=92.89 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=70.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc------CCCCCChHHHHHHHHHHHhcCCeEEEe
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------APDHPETKIVINQFSRVVQHERCSFFG 91 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~------~p~~~~~~~~~~~~~~~~~~~~v~~~~ 91 (483)
+.++|+||||||+||+||.+|++.+ .+|+|||+.+..+.++.... .|......++...+..++...++.+..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence 4579999999999999999999999 99999998766444433211 133345567777788888888888877
Q ss_pred CeEEce-------EEEecceeeccCEEEEccCC
Q 011535 92 NVTLGS-------SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 92 ~~~v~~-------~~~~~~~~~~yd~vvlAtG~ 117 (483)
+.+... .++........+.+++++|.
T Consensus 82 ~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~ 114 (190)
T d1trba1 82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGA 114 (190)
T ss_dssp CCEEEEECSSSSEEEEESSCEEEEEEEEECCCE
T ss_pred ceeEEEecCCCcEEEEEeeeeEeeeeeeeecce
Confidence 654432 22333334468899999997
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.86 E-value=1.3e-09 Score=95.72 Aligned_cols=85 Identities=9% Similarity=-0.032 Sum_probs=55.2
Q ss_pred EEecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHH
Q 011535 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASI 411 (483)
Q Consensus 332 ~i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I 411 (483)
+..++.+++++|......................+....+... ++++.|.+|+.||+..+....+ .++.+|+.+|..+
T Consensus 90 ~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~g~vigg~~~av-~a~~~g~~~a~~v 167 (196)
T d1gtea4 90 EEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPET-MQTSEPWVFAGGDIVGMANTTV-ESVNDGKQASWYI 167 (196)
T ss_dssp HTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTT-CBCSSTTEEECSGGGCSCCCHH-HHHHHHHHHHHHH
T ss_pred ccccceeeEEeccccCCccccccccccccccccccceeccccc-cCCCcccccccccccCCcchHH-HHHHHHhhhehhH
Confidence 4567889999996543211000011112223334455544444 7789999999999987766666 6889999999999
Q ss_pred HHHHhcC
Q 011535 412 SEDLEQG 418 (483)
Q Consensus 412 ~~~l~~~ 418 (483)
...+...
T Consensus 168 ~r~~~~~ 174 (196)
T d1gtea4 168 HKYIQAQ 174 (196)
T ss_dssp HHHHHHH
T ss_pred hhccHhh
Confidence 8887764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=1.4e-08 Score=81.88 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=62.5
Q ss_pred hhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 7 ~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
|.++........+++++|||||+.|+.+|..|.+.| .+|+|+++.+.+- |.+ ..++...+.+.+++.|
T Consensus 11 ~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG--~~Vtii~~~~~~l--------~~~--d~ei~~~l~~~l~~~G 78 (122)
T d1v59a2 11 VSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQIG--------ASM--DGEVAKATQKFLKKQG 78 (122)
T ss_dssp ECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------SSS--CHHHHHHHHHHHHHTT
T ss_pred EehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhC--cceeEEEeccccc--------hhh--hhhhHHHHHHHHHhcc
Confidence 344433344456789999999999999999999999 9999999988752 432 3567888888898899
Q ss_pred eEEEeCeEEc
Q 011535 87 CSFFGNVTLG 96 (483)
Q Consensus 87 v~~~~~~~v~ 96 (483)
++++.++.+.
T Consensus 79 V~i~~~~~v~ 88 (122)
T d1v59a2 79 LDFKLSTKVI 88 (122)
T ss_dssp CEEECSEEEE
T ss_pred ceEEeCCEEE
Confidence 9999998774
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.85 E-value=1.6e-08 Score=81.00 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred hhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCC
Q 011535 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (483)
Q Consensus 7 ~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~ 86 (483)
|.++........+++|+|||||+.|+.+|..|.+.| .+|+|+|+.+.+. |.+ ..++...+.+.+++.|
T Consensus 10 ~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~il--------~~~--d~~~~~~l~~~l~~~G 77 (117)
T d1ebda2 10 LDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SGF--EKQMAAIIKKRLKKKG 77 (117)
T ss_dssp ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TTS--CHHHHHHHHHHHHHTT
T ss_pred EChhHhhChhhcCCeEEEECCCccceeeeeeecccc--cEEEEEEecceec--------ccc--cchhHHHHHHHHHhcC
Confidence 444444455566799999999999999999999999 9999999998752 322 2467788888888899
Q ss_pred eEEEeCeEEc
Q 011535 87 CSFFGNVTLG 96 (483)
Q Consensus 87 v~~~~~~~v~ 96 (483)
++++.++.+.
T Consensus 78 I~i~~~~~v~ 87 (117)
T d1ebda2 78 VEVVTNALAK 87 (117)
T ss_dssp CEEEESEEEE
T ss_pred CEEEcCCEEE
Confidence 9999998874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.85 E-value=1.1e-08 Score=81.95 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
.+++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. |.+ .+++...+.+.+++.|++++.++.+..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~~il--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~ 88 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRIL--------RKF--DESVINVLENDMKKNNINIVTFADVVE 88 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSSC--------TTS--CHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHhcc--ccceeeehhcccc--------ccc--cHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 3789999999999999999999999 9999999987641 332 346778888888888999999976632
Q ss_pred ---------EEEecceee--ccCEEEEcc
Q 011535 98 ---------SVSLSELRQ--LYHVVVLAY 115 (483)
Q Consensus 98 ---------~~~~~~~~~--~yd~vvlAt 115 (483)
.+++.++.. .||.||+|.
T Consensus 89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 244555543 589999884
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=4.5e-10 Score=96.34 Aligned_cols=94 Identities=22% Similarity=0.232 Sum_probs=59.5
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce--ecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce-
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~--~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~- 97 (483)
||+|||||++|+.+|..|++ + .+|+|+++.+.+.... .............+.....+.....+++++.++.+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~--~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 78 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-T--YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI 78 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-T--SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-C--CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence 89999999999999999965 5 8999999987653210 0001111111112222223444556788888765532
Q ss_pred -----EEEecceeeccCEEEEccCC
Q 011535 98 -----SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 98 -----~~~~~~~~~~yd~vvlAtG~ 117 (483)
.+..+.....||.||+|+|.
T Consensus 79 ~~~~~~~~~~~~~i~~D~li~a~G~ 103 (167)
T d1xhca1 79 DRGRKVVITEKGEVPYDTLVLATGA 103 (167)
T ss_dssp ETTTTEEEESSCEEECSEEEECCCE
T ss_pred ccccccccccccccccceeEEEEEe
Confidence 23334444579999999997
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.81 E-value=4.4e-09 Score=89.05 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=49.5
Q ss_pred ccCCCCCCCCCCCCCCC--CCeeecceeeeeecCCCCCCCCCCCCCCCCeEEEE--cCCchHHHHHHHHhcCCccccccc
Q 011535 114 AYGAESDRALGIPGEDL--IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL--GQGNVALDVARILLRPTEELATTD 189 (483)
Q Consensus 114 AtG~~~~~~~~ipg~~~--~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVI--G~G~~g~e~A~~L~~~~~~l~~~d 189 (483)
|||+....+.+|||.+. ..++++.++.. .. ...++.++|+ |||.+|+|+|..|++
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~---~~---------~~~~~~vvi~d~ggg~ig~e~A~~la~--------- 62 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMD---GK---------KKIGKRVVILNADTYFMAPSLAEKLAT--------- 62 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHH---TC---------SCCCSEEEEEECCCSSHHHHHHHHHHH---------
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhc---Cc---------cccCCceEEEecCCChHHHHHHHHHHH---------
Confidence 79985444447999875 45777776642 11 1145667776 999999999999986
Q ss_pred cchHHHHHHhcCCccEEEEEeecCcc
Q 011535 190 IASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 190 i~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.| .+||++.+.+.+
T Consensus 63 -----------~G-~~Vtlv~~~~~~ 76 (156)
T d1djqa2 63 -----------AG-HEVTIVSGVHLA 76 (156)
T ss_dssp -----------TT-CEEEEEESSCTT
T ss_pred -----------cC-CeEEEEecCCcc
Confidence 45 589999988643
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.81 E-value=5.8e-08 Score=92.62 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=73.7
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC---------C
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV---------N 350 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~---------~ 350 (483)
+.++++++++.+.+++ . +++++.++.+.+ ..+|+...+.++.||+|||--.... .
T Consensus 170 ~~gv~i~~~~~~~~li--~-~~~~v~g~~~~~-------------~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~t 233 (336)
T d2bs2a2 170 KLGVSIQDRKEAIALI--H-QDGKCYGAVVRD-------------LVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCE 233 (336)
T ss_dssp HHTCEEECSEEEEEEE--E-ETTEEEEEEEEE-------------TTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCS
T ss_pred hccccccceeeeeecc--c-ccccccceeEEe-------------ccCCcEEEEecCeEEEecccccccccccccccccc
Confidence 5678888888888876 4 477777766543 1367777899999999998332110 0
Q ss_pred C--CCccCCCC-cccCCCCeeeecCCCCCCcccCceeeeccCCC-CCcc-------hhHhhHHHHHHHHHHHHHHHh
Q 011535 351 G--LPFDNHKG-IVPNIRGRVLKNISGDSSQVENGLYVCGWLKR-GPTG-------IIATNLYCAEETVASISEDLE 416 (483)
Q Consensus 351 ~--l~~~~~~g-~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~-g~~~-------~~~~a~~~g~~~a~~I~~~l~ 416 (483)
+ +...-..| ..+.+-+++..++. ..++.|++|++|+++. +..+ .+..++..+...++.+..+..
T Consensus 234 Gdg~~~~~~~G~~~l~~~~~iq~~~~--~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~~~ 308 (336)
T d2bs2a2 234 GTGTAIALETGIAQLGNMGGIRTDYR--GEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 308 (336)
T ss_dssp CHHHHHHHTTSSSCEECCCEEECCTT--SBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhccccceeechh--hcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHHhhcC
Confidence 0 00111223 23445678888887 7899999999999752 1111 222445555556666555543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.80 E-value=3.2e-08 Score=79.95 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=66.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
...++|+|||||+.|+.+|..|++.+ .+|++||+.+.+. |.. ...++...+.+.++..|++++.++.+.
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g--~~Vtlie~~~~~l--------~~~-~d~~~~~~~~~~l~~~gv~~~~~~~v~ 96 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPL--------GVY-LDKEFTDVLTEEMEANNITIATGETVE 96 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TTT-CCHHHHHHHHHHHHTTTEEEEESCCEE
T ss_pred cCCCEEEEECChHHHHHHHHHhhccc--eEEEEEEecCccc--------ccc-cchhhHHHHHHHhhcCCeEEEeCceEE
Confidence 35689999999999999999999999 9999999988652 221 224577788888888999999998764
Q ss_pred eE--------EEecceeeccCEEEEcc
Q 011535 97 SS--------VSLSELRQLYHVVVLAY 115 (483)
Q Consensus 97 ~~--------~~~~~~~~~yd~vvlAt 115 (483)
.- +..+.....+|.||+|.
T Consensus 97 ~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 97 RYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp EEECSSBCCEEEESSCEEECSEEEECS
T ss_pred EEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 31 11222224588888873
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=4e-09 Score=91.68 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=61.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc----cCCCCCC--hHHHHHHHHHHHhcCCeEEEeCe
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHPE--TKIVINQFSRVVQHERCSFFGNV 93 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g----~~p~~~~--~~~~~~~~~~~~~~~~v~~~~~~ 93 (483)
++|+||||||+|++||.++++.+ .+|+|||+. +||.+... -.|..+. ...+...+.......+.++....
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G--~~v~iie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe--cCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccc
Confidence 68999999999999999999999 999999975 45533211 1122222 24555666677777777766654
Q ss_pred EEceEE------------EecceeeccCEEEEccCC
Q 011535 94 TLGSSV------------SLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 94 ~v~~~~------------~~~~~~~~yd~vvlAtG~ 117 (483)
...... .........+.+++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (184)
T d1fl2a1 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113 (184)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred eeeeecccccccceeeeeeecceeeecccccccccc
Confidence 442211 111222357889999996
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.76 E-value=5.7e-09 Score=91.61 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=69.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC----CCcee--------cccCCCCCChHHHHHHHHHHHhcC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP----FGLVR--------SGVAPDHPETKIVINQFSRVVQHE 85 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~----ggl~~--------~g~~p~~~~~~~~~~~~~~~~~~~ 85 (483)
.+++|+||||||||++||.+|+|.+ .+++|+|+.+.. ++.+. ++. |......++...+.+++.+.
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~~~~~~q~~~~ 80 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGF-PEGILGVELTDKFRKQSERF 80 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTC-TTCEEHHHHHHHHHHHHHHT
T ss_pred ccceEEEECCCHHHHHHHHHHHHcC--CcEEEEEeecccccccccccccchhhhccccc-cccccchHHHHHHHHHHHhh
Confidence 4589999999999999999999999 999999987542 33221 111 23334568888888888888
Q ss_pred CeEEEeCeEEce-------EEEecceeeccCEEEEccCC
Q 011535 86 RCSFFGNVTLGS-------SVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 86 ~v~~~~~~~v~~-------~~~~~~~~~~yd~vvlAtG~ 117 (483)
++++..+.+... .+.........|.+++++|.
T Consensus 81 g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~ 119 (192)
T d1vdca1 81 GTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA 119 (192)
T ss_dssp TCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE
T ss_pred cceeeeeeEEecccccCcEEecccceeeeeeeEEEEeee
Confidence 988876643221 22333333468999999996
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.74 E-value=5.1e-08 Score=77.98 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=72.1
Q ss_pred hhhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcC
Q 011535 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE 85 (483)
Q Consensus 7 ~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~-~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~ 85 (483)
|.++........+++++|||||+.|+.+|..+...+. +.+|+||++.+.+ .|.+ ..++...+.+.+++.
T Consensus 8 ~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i--------L~~~--d~~~~~~l~~~l~~~ 77 (117)
T d1aoga2 8 ISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI--------LRGF--DHTLREELTKQLTAN 77 (117)
T ss_dssp BCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS--------STTS--CHHHHHHHHHHHHHT
T ss_pred EcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh--------hccc--chHHHHHHHHHHHhc
Confidence 3444444455567899999999999999988776652 3789999998764 2432 346778888889999
Q ss_pred CeEEEeCeEEce---------EEEeccee-eccCEEEEcc
Q 011535 86 RCSFFGNVTLGS---------SVSLSELR-QLYHVVVLAY 115 (483)
Q Consensus 86 ~v~~~~~~~v~~---------~~~~~~~~-~~yd~vvlAt 115 (483)
|++++.++.+.. .++++++. ..+|.|++|.
T Consensus 78 GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 78 GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 999999976532 24555544 4699999874
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.6e-08 Score=80.63 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
..++++|||||++|+.+|..|++.. .+.+|+++++.+.+.. . ..+.++...+.+.++..|++++.++.+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~--------~-~~~~~~~~~~~~~l~~~GV~~~~~~~V 106 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG--------K-ILPEYLSNWTMEKVRREGVKVMPNAIV 106 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT--------T-TSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc--------c-cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 3579999999999999999986421 1389999999877531 1 123467777888889999999999766
Q ss_pred ce--------EEEeccee-eccCEEEEccC
Q 011535 96 GS--------SVSLSELR-QLYHVVVLAYG 116 (483)
Q Consensus 96 ~~--------~~~~~~~~-~~yd~vvlAtG 116 (483)
.. .++++++. ..+|.||+|+|
T Consensus 107 ~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp EEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred EEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 32 25566654 47999999999
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.70 E-value=6.8e-09 Score=91.50 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=64.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceeccc---CCC-CCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APD-HPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~---~p~-~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
+||+|||||++|+.+|..|++.+++.+|+++++.+.+. ....++ ..+ ......+.....+.+...|++++.++.+
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V 79 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence 58999999999999999999998889999999987652 111111 011 1112222222234456679999999877
Q ss_pred ce------EEEec---ce---eeccCEEEEccCCC
Q 011535 96 GS------SVSLS---EL---RQLYHVVVLAYGAE 118 (483)
Q Consensus 96 ~~------~~~~~---~~---~~~yd~vvlAtG~~ 118 (483)
.. .+++. ++ ...||.+|+|+|+.
T Consensus 80 ~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~ 114 (198)
T d1nhpa1 80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114 (198)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred eeEeeccccceeeecccccccccccceeeEeecce
Confidence 32 23322 22 23699999999973
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=6.7e-08 Score=85.99 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=62.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceec--------------ccCCCCCChHHHHHHHHHHH-h
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--------------GVAPDHPETKIVINQFSRVV-Q 83 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~--------------g~~p~~~~~~~~~~~~~~~~-~ 83 (483)
.++|+||||||||++||.+++|.+ .++.||+++....|.+.. .+.+.-+..........+.+ .
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G--~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~ 79 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 79 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCC--CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence 579999999999999999999999 999999986321111110 01111122222323333333 4
Q ss_pred cCCeEEEeCeEEce--------EEEeccee-eccCEEEEccCCC
Q 011535 84 HERCSFFGNVTLGS--------SVSLSELR-QLYHVVVLAYGAE 118 (483)
Q Consensus 84 ~~~v~~~~~~~v~~--------~~~~~~~~-~~yd~vvlAtG~~ 118 (483)
..++.++.+.++.. .+.+.++. ..++.||||||+.
T Consensus 80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 56888888776532 13344433 4689999999984
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.68 E-value=8e-08 Score=77.30 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=66.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEce
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 97 (483)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |.+ ..++...+.+.++..+++++.++.+..
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~g--~~vt~i~~~~~~l--------~~~--d~~~~~~~~~~l~~~gI~v~~~~~v~~ 88 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LIK--DNETRAYVLDRMKEQGMEIISGSNVTR 88 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TCC--SHHHHHHHHHHHHHTTCEEESSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcc--hhheEeeccchhh--------ccc--ccchhhhhhhhhhccccEEEcCCEEEE
Confidence 3589999999999999999999999 9999999987642 322 235677788888888999999987732
Q ss_pred E----------E---Eecce-eeccCEEEEccC
Q 011535 98 S----------V---SLSEL-RQLYHVVVLAYG 116 (483)
Q Consensus 98 ~----------~---~~~~~-~~~yd~vvlAtG 116 (483)
- + ...+. ...+|.|++|+|
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 89 IEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 1 1 11111 236999999998
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.68 E-value=6e-09 Score=93.46 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.+++|+||||||||++||..+++.| .+|+|||+.+ +||
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~~-~GG 41 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQA-LGG 41 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSC-TTH
T ss_pred cccCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC-CCC
Confidence 3579999999999999999999999 9999999875 344
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.66 E-value=1.6e-08 Score=90.50 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
..++|+||||||||++||.++++.+ .+|+|||+.+..||.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~~~GG~ 41 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGT 41 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCCe
Confidence 4689999999999999999999999 999999999888874
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.66 E-value=1.6e-08 Score=93.95 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=33.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+.++|+|||||.+|+++|++|+++| .+|+|||+.+.
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~~ 37 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDP 37 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 5789999999999999999999999 99999999754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.63 E-value=6.7e-08 Score=77.98 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=61.5
Q ss_pred hhhhhccCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCe
Q 011535 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (483)
Q Consensus 8 ~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v 87 (483)
.++.......-+++++|||||+.|+.+|..+.+.| .+|+|+++.+.+. |. ...++...+.+.+++.|+
T Consensus 14 ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G--~~Vtvi~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI 81 (123)
T d1dxla2 14 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGM 81 (123)
T ss_dssp CHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSC
T ss_pred eHHHhhCccccCCeEEEEccchHHHHHHHHHHhcC--CeEEEEEEccccC--------ch--hhhcchhhhhhhhhcccc
Confidence 33333344556789999999999999999999999 9999999988752 32 124677788888898999
Q ss_pred EEEeCeEEc
Q 011535 88 SFFGNVTLG 96 (483)
Q Consensus 88 ~~~~~~~v~ 96 (483)
+++.++.+.
T Consensus 82 ~i~~~~~v~ 90 (123)
T d1dxla2 82 KFKLKTKVV 90 (123)
T ss_dssp CEECSEEEE
T ss_pred eEEcCCceE
Confidence 999998873
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=1.4e-08 Score=95.88 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=60.9
Q ss_pred cceEEEeecCCcceeecccC----CCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCC------
Q 011535 280 QRELHFVFFRKPDSFLESNE----RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV------ 349 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~----~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~------ 349 (483)
..+++++.++.+.+++.+++ ..+++.++...+ ..+++...+.++.||+|||--....
T Consensus 150 ~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~-------------~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~ 216 (305)
T d1chua2 150 HPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWN-------------RNKETVETCHAKAVVLATGGASKVYQYTTNP 216 (305)
T ss_dssp CTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEE-------------TTTTEEEEEECSEEEECCCCCGGGSSSBSCG
T ss_pred ccCcceeceeEEEEEEEEcCcccccCceEEEEEEEe-------------CCCCcEEEEeecceEEeeeccccceeccCCC
Confidence 45677777777777652110 122566665433 1256667899999999998432110
Q ss_pred -----CCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCC
Q 011535 350 -----NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (483)
Q Consensus 350 -----~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~ 390 (483)
+++.+....|..+.+-+++.++++ .+|+.||+|++|+++
T Consensus 217 ~~~TGDG~~mA~~aGa~l~~m~~iq~~~~--g~t~~~g~~a~G~~~ 260 (305)
T d1chua2 217 DISSGDGIAMAWRAGCRVANCGGVMVDDH--GRTDVEGLYAIGEVS 260 (305)
T ss_dssp GGCSCHHHHHHHHTTCCEECSCEEECCTT--CBCSSBTEEECGGGE
T ss_pred CceecccEeeccccceeeEecceeEECCc--ccCCCCCceecccEE
Confidence 001122234667777788999887 778999999999874
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.58 E-value=2.1e-08 Score=95.27 Aligned_cols=46 Identities=37% Similarity=0.467 Sum_probs=41.4
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+.+.++++|+|||||+|||+||..|+++| ++|+|||+++.+||.+.
T Consensus 25 ~~~~~pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~~~GG~~~ 70 (370)
T d2iida1 25 KATSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVR 70 (370)
T ss_dssp CCCSSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTCC
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCeeE
Confidence 34567899999999999999999999999 99999999999998643
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.58 E-value=7.6e-08 Score=88.93 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+|+|||||++|+++|++|+++| .+|+|||+...
T Consensus 4 ~~DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~~ 38 (276)
T d1ryia1 4 HYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTM 38 (276)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSST
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 468999999999999999999999 99999999753
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=9.8e-09 Score=91.66 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=67.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC-CC--ceeccc----CCC----------C-------CChHH
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FG--LVRSGV----APD----------H-------PETKI 73 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~-gg--l~~~g~----~p~----------~-------~~~~~ 73 (483)
..++++|||||+||+++|..|++.+++.+|++|++.+.+ |- .+.+.. .+. . ..+.+
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 82 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence 456899999999999999999999888899999987653 11 000000 000 0 00000
Q ss_pred H--HHHHHHHHhcCCeEEEeCeEEc------eEEEeccee-eccCEEEEccCCCCCCCCCCC
Q 011535 74 V--INQFSRVVQHERCSFFGNVTLG------SSVSLSELR-QLYHVVVLAYGAESDRALGIP 126 (483)
Q Consensus 74 ~--~~~~~~~~~~~~v~~~~~~~v~------~~~~~~~~~-~~yd~vvlAtG~~~~~~~~ip 126 (483)
. .......+++.+++++.++.|. +.++++++. ..||.||+|||+. +..+.++
T Consensus 83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~-~~~~~l~ 143 (213)
T d1m6ia1 83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGT-EPNVELA 143 (213)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEE-EECCTTH
T ss_pred hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeee-cchhhhh
Confidence 0 0001123355689999987663 246776664 4799999999983 3443443
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.55 E-value=1.9e-08 Score=92.74 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
...++++||||||+|+.+|..+++.+ .+|++||+.+.+||
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~~G--~kv~vve~~~~lGG 79 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGG 79 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSC
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccc
Confidence 34678999999999999999999999 99999999988877
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.54 E-value=6.8e-08 Score=90.28 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=53.3
Q ss_pred CCceEEEecCeEEEeeecCCCC-C----CCCCccCC--CCcc-cCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhH
Q 011535 327 TGEFEDLDCGMVLKSIGYKSVP-V----NGLPFDNH--KGIV-PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (483)
Q Consensus 327 ~g~~~~i~~D~vi~a~G~~~~~-~----~~l~~~~~--~g~~-~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~ 398 (483)
.++.+.+++|.||+|++..... + ...++... ..+. .+.++.+...+. +.++.||||++||+..|+. +.
T Consensus 277 ~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~t~~pglf~aGd~~~g~~-~~- 352 (373)
T d1seza1 277 KRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDK--MEKNLPGLFYAGNHRGGLS-VG- 352 (373)
T ss_dssp SSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTHHHHHHHHHH--HHHHSTTEEECCSSSSCSS-HH-
T ss_pred CCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCCCcEeecccc--cCCCCCCEEEEecCCCchh-HH-
Confidence 3455689999999998753210 0 00000000 0000 011112222222 5578999999999977653 44
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 011535 399 TNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 399 ~a~~~g~~~a~~I~~~l~~~ 418 (483)
.|+.+|..+|+.|+++|+..
T Consensus 353 ~A~~~G~~aA~~i~~~L~~~ 372 (373)
T d1seza1 353 KALSSGCNAADLVISYLESV 372 (373)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999864
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.52 E-value=2.3e-07 Score=87.25 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=37.7
Q ss_pred cCCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 14 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
..+....+|+|||||+||+++|+.|+++| .+|+||||.+..+|
T Consensus 11 ~~p~e~~DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~~~gG 53 (308)
T d1y0pa2 11 SAPHDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGG 53 (308)
T ss_dssp SCCSEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCT
T ss_pred cCCCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCC
Confidence 34445689999999999999999999999 99999999987654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.52 E-value=3.2e-08 Score=92.60 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=38.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
.|||+|||||||||+||++|++.| ++|+|||+++.+||.+.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~~ 41 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLR 41 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCCCCcCceE
Confidence 379999999999999999999999 99999999999999653
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=4e-08 Score=87.84 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
.++|+||||||||++||.++++.+ .+|+|||+....|
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G--~kV~vIEk~~~GG 39 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELG--ARAAVVESHKLGG 39 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTTH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccCCCC
Confidence 479999999999999999999999 9999999876543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.48 E-value=8.5e-08 Score=90.09 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=30.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.||+|||||.+|+++|++|++++ . +|+|+|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G--~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcC--CCcEEEEeCCC
Confidence 48999999999999999999998 6 699999985
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.46 E-value=5.1e-08 Score=89.09 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=36.7
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~ggl~~ 61 (483)
+||+|||||||||+||..|+++| + +|+|||+++.+||.++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G--~~~V~vlE~~~~~GG~~~ 41 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH 41 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred CCEEEECCcHHHHHHHHHHHhCC--CCcEEEEECCCCCCceEE
Confidence 48999999999999999999998 7 6999999999998654
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.2e-08 Score=91.58 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=39.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
.+.++||+|||||+|||+||..|+++| ++|+|+|+++.+||..
T Consensus 2 ~~~~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~r~GGr~ 44 (449)
T d2dw4a2 2 TKKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 44 (449)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCcccE
Confidence 346688999999999999999999999 9999999999999854
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3e-06 Score=79.58 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=61.3
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee-----cCCCCCC----
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG-----YKSVPVN---- 350 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G-----~~~~~~~---- 350 (483)
..+|+++.++.+.+++ . +++++.++...+ ..+|+...+.++.||+||| |..++-+
T Consensus 147 ~~~v~i~~~~~v~~Ll--~-d~g~v~Gvv~~~-------------~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~t 210 (311)
T d1kf6a2 147 FPQIQRFDEHFVLDIL--V-DDGHVRGLVAMN-------------MMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVT 210 (311)
T ss_dssp CTTEEEEETEEEEEEE--E-ETTEEEEEEEEE-------------TTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCS
T ss_pred cCcceeEeeeEeeeeE--e-cCCcceeEEEEE-------------cCCCcEEEEECCEEEEcCCCccccccccCCCCCcC
Confidence 5578998888888887 4 578888776543 1256667899999999998 3322100
Q ss_pred --CCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCC
Q 011535 351 --GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (483)
Q Consensus 351 --~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~ 390 (483)
++.+....|..+-+=+++..++. ..+..+++|+.|++.
T Consensus 211 GDG~~mA~~aGa~l~dme~iq~~p~--~~~~~~~~~~~~~~~ 250 (311)
T d1kf6a2 211 GDGMGMALSHGVPLRDMGGIETDQN--CETRIKGLFAVGECS 250 (311)
T ss_dssp CHHHHHHHTTTCCEESCCEEECCTT--SBCSSBTEEECGGGE
T ss_pred cHHHHHHHhcccceeeccccccccc--chhcccCCCcCccee
Confidence 01122234454444466776665 557789999999875
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.43 E-value=5.4e-07 Score=82.15 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=63.8
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCC-----CCc
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNG-----LPF 354 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~-----l~~ 354 (483)
+.|+++++++.+.++.... ++..+. ... +.+..++.||.||+|+|-.+.|..+ +.+
T Consensus 121 ~~gV~i~~~~~V~~i~~~~-~~~~v~-~~~-----------------~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~ 181 (253)
T d2gqfa1 121 KYGAKILLRSEVSQVERIQ-NDEKVR-FVL-----------------QVNSTQWQCKNLIVATGGLSMPGLGATPFGYQI 181 (253)
T ss_dssp HHTCEEECSCCEEEEEECC-SCSSCC-EEE-----------------EETTEEEEESEEEECCCCSSCGGGTCCSHHHHH
T ss_pred HcCCCeecCceEEEEEeec-CCceeE-EEE-----------------ecCCEEEEeCEEEEcCCcccccccCCCchHHHH
Confidence 5689999999998886312 122221 111 1122489999999999977644211 112
Q ss_pred cCCCCcccCC-----CCeee---ecC-CCCCCcccCceeeeccCCC--CCcch--hHhhHHHHHHHHHHHHH
Q 011535 355 DNHKGIVPNI-----RGRVL---KNI-SGDSSQVENGLYVCGWLKR--GPTGI--IATNLYCAEETVASISE 413 (483)
Q Consensus 355 ~~~~g~~~~~-----~G~v~---v~~-~~~~~t~~p~vya~Gd~~~--g~~~~--~~~a~~~g~~~a~~I~~ 413 (483)
..+.++..-+ .|.+. .+. .+ .+..+||+|++|.+.. |..|- ...|...|..++..|.+
T Consensus 182 a~~~~~~i~~~~~~~~ggv~~~~i~~~t~-es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 182 AEQFGIPVIPPRAVTMGGVDTKVISSKTM-ESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp HHHTTCCEEEEEEEEEEEECGGGBCTTTC-BBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccccccccccCCCCcccccCccch-hhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence 2222222100 12221 121 22 3346899999996642 33332 23688999999988763
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=9.1e-08 Score=86.53 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+.++|+|||||++|++||..|+++| .+|+|||+++.+||...
T Consensus 4 ~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 4 TDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCcceE
Confidence 4689999999999999999999999 99999999999999753
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.40 E-value=8.5e-08 Score=89.35 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=37.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
++|+|||||+|||+||..|+++| ++|+|||+++.+||...
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~ 40 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG 40 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCceEE
Confidence 58999999999999999999999 99999999999998643
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.38 E-value=1.3e-07 Score=89.43 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=38.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~ 60 (483)
+|+|+|||||++||+||..|+++| .+|+|||+++++||.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~~iGG~~ 41 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNS 41 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCC--CCEEEEECCCCCcCee
Confidence 689999999999999999999998 9999999999999975
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.37 E-value=1.1e-06 Score=79.56 Aligned_cols=114 Identities=26% Similarity=0.352 Sum_probs=66.9
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCC-----CCc
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNG-----LPF 354 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~-----l~~ 354 (483)
+.|+++++++.+..+. . +++.+..+.+. ++ +++.||.||.|+|-...+..+ ..+
T Consensus 122 ~~gv~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g--~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~ 180 (251)
T d2i0za1 122 DLGVKIRTNTPVETIE--Y-ENGQTKAVILQ----------------TG--EVLETNHVVIAVGGKSVPQTGSTGDGYAW 180 (251)
T ss_dssp HTTCEEECSCCEEEEE--E-ETTEEEEEEET----------------TC--CEEECSCEEECCCCSSSGGGSCSSHHHHH
T ss_pred HcCCcccCCcEEEEEE--E-ECCEEEEEEeC----------------CC--CeEecCeEEEccCCccccccCCCcccchh
Confidence 5689999999999887 3 35655544432 22 379999999999976543211 112
Q ss_pred cCCCCcccCC--CCeee----ecCCCCCCcccCceeeeccCCC--CCc-c-hhHhhHHHHHHHHHHHHHHH
Q 011535 355 DNHKGIVPNI--RGRVL----KNISGDSSQVENGLYVCGWLKR--GPT-G-IIATNLYCAEETVASISEDL 415 (483)
Q Consensus 355 ~~~~g~~~~~--~G~v~----v~~~~~~~t~~p~vya~Gd~~~--g~~-~-~~~~a~~~g~~~a~~I~~~l 415 (483)
....++.+.. .+.+. ....+ ..+..|++|++|++.. +.. | .+..+...|+.++..+.++.
T Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~~~~ 250 (251)
T d2i0za1 181 AEKAGHTITELFGGGVSVKEINPKEM-SSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA 250 (251)
T ss_dssp HHHTTCCEEEEEEEEECGGGEETTTT-EESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeeeeeecccCccccCchhH-HHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 2223332221 01111 11111 2356799999999852 211 1 23367889999988877653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.31 E-value=2.7e-07 Score=84.40 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
.+.+||+||||||||+++|..|+++| ++|+|||+.+.++.
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~~~ 41 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQPLS 41 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCC
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCC
Confidence 35689999999999999999999999 99999999877643
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1.9e-07 Score=87.64 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=37.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+++|+|||||+||++||..|+++| .+|+|||+.+++||...
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~~iGG~~~ 41 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNAY 41 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGGC
T ss_pred CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCCCcccceE
Confidence 368999999999999999999998 99999999999999753
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.27 E-value=2.1e-07 Score=80.53 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=57.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHH---HHHHHHHHhcCCeEEEeCeEE
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIV---INQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~---~~~~~~~~~~~~v~~~~~~~v 95 (483)
+.+|+|||||++|+.+|..|++.+.+..++++++.+.+ .+.+...... .... ...........+++++.+..+
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~v 78 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER--PYDRPPLSKD--FMAHGDAEKIRLDCKRAPEVEWLLGVTA 78 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC--CBCSGGGGTT--HHHHCCGGGSBCCGGGSTTCEEEETCCE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc--chhhHHHhhh--hhhhhhhhhHHHHHhhcCCeEEEEeccc
Confidence 45699999999999999999999855666666554432 1111000100 0000 000111233457888888655
Q ss_pred ce------EEEeccee-eccCEEEEccCCCCCC
Q 011535 96 GS------SVSLSELR-QLYHVVVLAYGAESDR 121 (483)
Q Consensus 96 ~~------~~~~~~~~-~~yd~vvlAtG~~~~~ 121 (483)
.. .+.+.++. ..||.||+|+|. .|+
T Consensus 79 ~~i~~~~~~~~~~~g~~~~~D~vi~a~G~-~p~ 110 (183)
T d1d7ya1 79 QSFDPQAHTVALSDGRTLPYGTLVLATGA-APR 110 (183)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EEC
T ss_pred cccccccceeEecCCcEeeeeeEEEEEEE-Ecc
Confidence 32 34444443 469999999997 343
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.27 E-value=7.3e-07 Score=79.25 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++|+||||||||++||.++++.+ .+|+|||+...
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~~~ 37 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKGNL 37 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEecCCC
Confidence 479999999999999999999999 99999999764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=5.9e-06 Score=75.32 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=39.0
Q ss_pred ceEEEecCeEEEeeecCCC----CCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCC
Q 011535 329 EFEDLDCGMVLKSIGYKSV----PVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (483)
Q Consensus 329 ~~~~i~~D~vi~a~G~~~~----~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~ 391 (483)
..+++.+|.||+|||.+|. ..+++.+ +..++..+ ++.+.++.. .++.+.++|++||+..
T Consensus 135 ~~~~i~a~~iiIATGs~P~~~~~~~~~~~l-~~~~i~ts-~~~~~~d~~--~~t~Vig~gaiGdv~~ 197 (259)
T d1onfa1 135 NEEILEGRNILIAVGNKPVGRSPDTENLKL-EKLNVETN-NNYIVVDEN--QRTSVNNIYAVGDCCM 197 (259)
T ss_dssp -----CBSSEEECCCCCBCCBCCTTTTSSC-TTTTCCBS-SSCEEECTT--CBCSSSSEEECSTTEE
T ss_pred ceEEEeeeeEEEecCCCCcccccccccccc-ccceeeec-ccccccccC--CceeEeeEEEEEEeee
Confidence 3458999999999999983 3344444 23344444 577777765 6788999999999853
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.24 E-value=7.5e-07 Score=69.67 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+|+|+|||+|++|+|+|..|++ .+++++++.|++.
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~---------------------~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTP---------------------VAKHPIYQSLLGG 66 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTT---------------------TSCSSEEEECTTC
T ss_pred CCCeEEEECCCCCHHHHHHHHHH---------------------hcCEEEEEEecCc
Confidence 78999999999999999999985 4566777777764
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.23 E-value=3.5e-07 Score=84.73 Aligned_cols=44 Identities=36% Similarity=0.439 Sum_probs=39.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCceecc
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSG 63 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~-~~~~~v~lie~~~~~ggl~~~g 63 (483)
...+|+|||||||||+||..|+++ | ++|+|||+.+.+||.++++
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~~~GG~~~~~ 76 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGGGAWLG 76 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCTTTTCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccC--CeEEEEecCCCCCCceeec
Confidence 457999999999999999999874 7 9999999999999877653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.22 E-value=3.7e-07 Score=81.90 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=36.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl 59 (483)
.++|+|||||||||+||.+|++.+ .+|+|||+.+.+||.
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G--~~V~viE~~~~~GG~ 44 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGV 44 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHH
T ss_pred ccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCCCCCe
Confidence 479999999999999999999999 999999999888763
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.21 E-value=7e-07 Score=81.14 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
.+.+||+|||||++||++|+.|++++ .+|+||||.+..
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~~~ 41 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLPE 41 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCTT
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence 35679999999999999999999999 999999997643
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=4.9e-07 Score=86.10 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=36.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcee
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~ 61 (483)
+|+|||||+|||+||..|+++| ++|+|+|+++.+||...
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~~~GGr~~ 39 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTY 39 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTT--CCEEEEESSSSSBTTCC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCcceee
Confidence 6999999999999999999999 99999999999998653
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=4.1e-07 Score=85.74 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=41.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecc
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g 63 (483)
...++|+|||||||||+||..|+++.++++|+|||+++.+||.++++
T Consensus 48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (311)
T d2gjca1 48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG 94 (311)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence 34678999999999999999999874459999999999999987764
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.12 E-value=3.1e-05 Score=72.05 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=38.1
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeee
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 343 (483)
+.++.+++++.+++++ .+++|+|.+|.+.+. .+...++.++.||+|||
T Consensus 157 ~~gv~i~~~~~v~~li--~~~~G~V~Gv~~~~~--------------~~~~~~i~Ak~VVlAtG 204 (308)
T d1y0pa2 157 KRNIDLRMNTRGIEVL--KDDKGTVKGILVKGM--------------YKGYYWVKADAVILATG 204 (308)
T ss_dssp HTTCEEESSEEEEEEE--ECTTSCEEEEEEEET--------------TTEEEEEECSEEEECCC
T ss_pred hccceEEEeeccchhh--hhccccccccccccc--------------ccceeEeecCeEEEccC
Confidence 6789999999999987 435789998887652 23345899999999999
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=1.5e-06 Score=84.12 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=36.0
Q ss_pred CCeEEEECccHHHHHHHHHHHh------cCCCCeEEEEecCCCCCCcee
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLK------AHQEAQVDIIDRLPTPFGLVR 61 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~------~~~~~~v~lie~~~~~ggl~~ 61 (483)
.++|+||||||||++||+.|++ .+ ++|+||||...+|....
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~G--l~VlllEK~~~pG~k~~ 78 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIGAHTL 78 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTTTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCC--CEEEEEcCCCCCCCCcc
Confidence 4799999999999999999998 56 99999999988865543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.00 E-value=2.7e-06 Score=78.07 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPF 57 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~~g 57 (483)
+.+|+|||||||||++|..|++.| + +|+|+|+.+.+.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~G--i~~V~V~Er~~~~~ 38 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEIR 38 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCeEEEEeCCCCCC
Confidence 469999999999999999999998 7 899999998764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=5.7e-06 Score=70.66 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~ 216 (483)
..|+|+|||+|++|+++|..|++ .+ .+|+|+.+.+.+.
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~--------------------~G-~~Vtl~E~~~~~G 79 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAA--------------------RG-HQVTLFDAHSEIG 79 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSSSSC
T ss_pred CCcEEEEECccHHHHHHHHHHHh--------------------hc-cceEEEeccCccC
Confidence 57899999999999999999986 34 5899999987543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.95 E-value=7.6e-06 Score=70.09 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+++|+|||||++|+.+|..|.+.+.+..|+++++.
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence 467999999999999999999999944444444443
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.91 E-value=1.9e-05 Score=65.78 Aligned_cols=66 Identities=15% Similarity=0.023 Sum_probs=49.0
Q ss_pred CCeEEEE--CccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEc
Q 011535 19 PLRVCVV--GSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (483)
Q Consensus 19 ~~~vvII--G~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 96 (483)
.+.++|+ |||+.|+.+|..|+++| .+|+|+++.+.+...+. +. ....+.+.+.+.|++|+.++.+.
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G--~~Vtlv~~~~~~~~~~~----~~------~~~~~~~~l~~~GV~i~~~~~v~ 106 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVHLANYMHF----TL------EYPNMMRRLHELHVEELGDHFCS 106 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSCTTTHHHH----TT------CHHHHHHHHHHTTCEEEETEEEE
T ss_pred CCceEEEecCCChHHHHHHHHHHHcC--CeEEEEecCCccccccc----hh------HHHHHHHHHhhccceEEeccEEE
Confidence 4555655 99999999999999999 99999999876542221 11 22345556666799999998874
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.91 E-value=3.3e-06 Score=78.17 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+.+|+||||||+||++|..|+++| ++|+|||+.+.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~ 36 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 358999999999999999999999 99999999874
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.87 E-value=4.5e-05 Score=70.80 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=29.1
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.-+|+|||+|.+|+-+|..|.+ .+. +|+|+.+.+.
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~--------------------~G~-~v~i~Ek~~~ 41 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRE--------------------LGR-SVHVIETAGD 41 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHh--------------------CCC-CEEEEEcCCC
Confidence 4579999999999999999986 555 6889988754
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.85 E-value=9.4e-05 Score=69.68 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCC-ccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~-~~~V~li~r~~~~ 215 (483)
.-|+|+|||+|++|+-+|..|++ .+ ..+|+++.|+..+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~--------------------~~~~~~v~vfEk~~~i 41 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLA--------------------EKAFDQVTLFERRGSP 41 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT--------------------TTCCSEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--------------------hCCCCCEEEEECCCCC
Confidence 35899999999999999999875 33 3589999999643
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.66 E-value=1.3e-05 Score=75.91 Aligned_cols=38 Identities=37% Similarity=0.512 Sum_probs=33.0
Q ss_pred CCCeEEEECccHHHHHHHHHHH-----hcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTL-----KAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~-----~~~~~~~v~lie~~~~~g 57 (483)
+.++|+||||||+|+++|..|+ +.| ++|+|||+.+.+.
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCCCCC
Confidence 3479999999999999999997 456 9999999987653
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.63 E-value=2.2e-05 Score=69.93 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..++|+||||||||++||.++++.+ ...|+|+|+..
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g-~k~V~iie~~~ 37 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLY-KKRVAVIDVQM 37 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTS-CCCEEEEESCS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEeec
Confidence 5789999999999999999999987 13688888753
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.61 E-value=1.8e-05 Score=70.92 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
..++|+||||||||++||.++++.+ . +|.|+|+...
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g--~k~V~vie~~~~ 38 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLH--KKRVAVIDLQKH 38 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHH--CCCEEEEESCSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcC--CCEEEEEEEecc
Confidence 5689999999999999999999987 5 5899998764
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00022 Score=59.42 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=25.9
Q ss_pred ccCCCCCCeEEEECccHHHHHHHHHHHhcC
Q 011535 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAH 42 (483)
Q Consensus 13 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~~ 42 (483)
.......++|+|||||..|+-+|..+.+.|
T Consensus 23 ~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G 52 (162)
T d1ps9a2 23 RDKAPVGNKVAIIGCGGIGFDTAMYLSQPG 52 (162)
T ss_dssp TSCCCCCSEEEEECCHHHHHHHHHHHTCCS
T ss_pred hCccccCCceEEEcCchhHHHHHHHHHHcC
Confidence 344456789999999999999999999987
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=8.8e-06 Score=76.96 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=36.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~gg 58 (483)
+....+|+|||+|+|||+||..+++++ .+|+|+||.+..+|
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G--~~V~lleK~~~~gg 44 (330)
T d1neka2 4 PVREFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPTRS 44 (330)
T ss_dssp CEEEESCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCGGGS
T ss_pred CcccCCEEEECcCHHHHHHHHHHHHcC--CeEEEEeCCCCCCC
Confidence 335679999999999999999999999 99999999876544
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.47 E-value=4.4e-05 Score=72.50 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCCCCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFG 58 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~--~~~~v~lie~~~~~gg 58 (483)
..+|+|||+|+|||+||+.|++.. ++.+|+|+||.+..+|
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg 62 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence 369999999999999999998631 2399999999876543
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.40 E-value=5.5e-05 Score=72.10 Aligned_cols=38 Identities=29% Similarity=0.300 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~g 57 (483)
..++|||||+|+||+.+|.+|++.+ ++|+|+|+.+...
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~~G--~kVlvLEaG~~~~ 40 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDS 40 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCS
T ss_pred CcccEEEECcCHHHHHHHHHHhhCC--CeEEEEecCCCCC
Confidence 3579999999999999999999998 9999999976543
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.38 E-value=7.9e-05 Score=66.00 Aligned_cols=50 Identities=14% Similarity=0.312 Sum_probs=36.8
Q ss_pred CCCCCCCCCC-CC-CeeecceeeeeecCCCCCCCCCCCCCCCCeEEEEcCCchHHHHHHHHhc
Q 011535 120 DRALGIPGED-LI-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 120 ~~~~~ipg~~-~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
|+.|.+||.+ .+ .++|+.+|.. . ..++ .+|+|+|||+|.+|+|+|..+++
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~----~------~~~~-~gK~V~VvG~G~Sa~dia~~~~~ 53 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPH----E------PVDF-SGQRVGVIGTGSSGIQVSPQIAK 53 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCS----S------CCCC-BTCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCChhhCCCcEEecCcCCC----C------CCCC-CCCEEEEECCCccHHHHHHHHHh
Confidence 5677889976 44 4667766521 0 1123 78999999999999999999986
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.37 E-value=0.00072 Score=55.62 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~~ 55 (483)
+...++|+|||||.+|+-+|..+.+.+ . .|+++.+.+.
T Consensus 42 p~~~~kVvVIGGGdtA~D~A~~a~r~G--A~~V~vi~rr~~ 80 (153)
T d1gtea3 42 PSIRGAVIVLGAGDTAFDCATSALRCG--ARRVFLVFRKGF 80 (153)
T ss_dssp CCCCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCG
T ss_pred ccCCCEEEEECCChhHHHHHHHHHHcC--CcceeEEEeCCh
Confidence 345679999999999999999999997 5 5888877653
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.26 E-value=0.00053 Score=63.11 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=35.1
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~ 348 (483)
+.|+++++++.++++. . +++++.+|+. .++ +++||.||+|+|.-...
T Consensus 160 ~~gv~i~~~~~V~~i~--~-~~~~v~~V~T------------------~~g-~i~a~~VV~aaG~~s~~ 206 (305)
T d1pj5a2 160 SAGVTYRGSTTVTGIE--Q-SGGRVTGVQT------------------ADG-VIPADIVVSCAGFWGAK 206 (305)
T ss_dssp HTTCEEECSCCEEEEE--E-ETTEEEEEEE------------------TTE-EEECSEEEECCGGGHHH
T ss_pred cccccccCCceEEEEE--E-eCCEEEEEec------------------cce-eEECCEEEEecchhHHH
Confidence 6799999999999997 4 4666655542 222 79999999999976543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.24 E-value=0.0023 Score=57.52 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=30.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
-+|+|||+|++|+-+|..|.+ .|..+|+|+.|++.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~--------------------~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHh--------------------CCCCeEEEEeCCCC
Confidence 379999999999999999986 67778999999864
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.0034 Score=49.59 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=50.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
-..++|+|||+|-+++..|..|.+.. -+|+++-|.+.. ...+.....+.+.....++.++.++.+
T Consensus 25 ~~~k~V~VvGgGdsA~e~A~~L~~~a--~~V~li~r~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (126)
T d1trba2 25 YRNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGF------------RAEKILIKRLMDKVENGNIILHTNRTL 89 (126)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSC------------CCCHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred hCCCEEEEECCCHHHHHHHHHHhhcC--CcEEEEeecccc------------cchhHHHHHHHHhhcccceeEecceEE
Confidence 36789999999999999999999988 899999876532 122345556666667778988888765
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.08 E-value=4e-05 Score=68.28 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=28.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCC----eEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEA----QVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~----~v~lie~~~~ 55 (483)
+||+|||||.+||++|++|+++++++ +++++++...
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~ 40 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT 40 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence 58999999999999999999998332 5666765543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.00018 Score=63.76 Aligned_cols=144 Identities=25% Similarity=0.411 Sum_probs=89.3
Q ss_pred EecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 333 LDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 333 i~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
...|.|++|||..+..+........ ........... ........+..++...++..++..+...+..++....
T Consensus 94 ~~~~~v~~atGa~~~~~~~~g~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v 166 (239)
T d1lqta2 94 ERYDAVIYAVGAQSRGVPTPGLPFD-----DQSGTIPNVGG--RINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLI 166 (239)
T ss_dssp HHSSEEEECCCCCEECCCCTTSCCB-----TTTTBCCEETT--EETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred ccccceeeecCCCcccccccccccc-----ccccchhhhhh--hhccccccccceeecCCCEEEEeCCCchHHHHHHHHH
Confidence 4579999999987644221111110 00011100000 1112344555555545566665555666666666655
Q ss_pred HHHhcCcCCC-CCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhhC
Q 011535 413 EDLEQGVLAS-SSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVAT 483 (483)
Q Consensus 413 ~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~~ 483 (483)
..+..+.... ...........+...+..+++.+++|.+|++||+.|+..|+..||+|+|++++++||++++
T Consensus 167 ~vig~g~~~~~~~~~~~~~~~~~~~~l~~~~v~~v~~~~w~~id~~E~~~g~~~G~~R~k~~~~~~ml~~~~ 238 (239)
T d1lqta2 167 KNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGL 238 (239)
T ss_dssp HHHHHHHHTTCSCCC--CHHHHHHHHHHHHCTTCEEHHHHHHHHHHHHHHHGGGTSSCCCCCSHHHHHHHHC
T ss_pred hhccCCccccccccccccchhHHHHHHHhcCCCccCccccccchHHHHhcchhcCCCeEeccCHHHHHhhhc
Confidence 5554322111 1111234556677788888999999999999999999999999999999999999999975
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.06 E-value=0.00022 Score=67.82 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=30.4
Q ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 21 ~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+|||||+|++|+.+|.+|++.+ ++|+|+|+..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG~ 35 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQ 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred eEEEeCcCHHHHHHHHHHHHCc--CeEEEEecCC
Confidence 7999999999999999999998 9999999964
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00037 Score=52.17 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..++|+|+|.|-+|+++|..|.+++ .+|+++|..+.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCcC
Confidence 5689999999999999999999999 99999998654
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=96.96 E-value=0.00029 Score=67.04 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
...+|||||+|++|+.+|.+|++.+ .+|+|+|+..
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG~ 40 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMGR 40 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 4579999999999999999999998 9999999864
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.95 E-value=0.0093 Score=56.53 Aligned_cols=224 Identities=16% Similarity=0.113 Sum_probs=113.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCccccc------CCHHHHHHHhcC----
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA------CTAKELREILGI---- 230 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~------f~~~el~~~~~~---- 230 (483)
.|+|||||++|+-+|..|++ +......+ -+|.||.|......+ +.+.-+.+++..
T Consensus 34 DViIVGgGPAGlsaA~~LA~--------------l~~~~~~G-l~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~ 98 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQ--------------LAAQHEKD-LRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEK 98 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------HHHHTTCC-CCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHH
T ss_pred CEEEECCCHHHHHHHHHHHh--------------hhhhhcCC-CEEEEEcCCCCCCCCccccccccHHHHHHHccchhhh
Confidence 69999999999999999874 00011123 469999987543211 333445444321
Q ss_pred -CCe-------eEEecccc----ccCCCCcHH--HhhccHHHHHHHHHHHHHHHhcCCCCCCCcceEEEeecCCcceeec
Q 011535 231 -KNL-------YVHIREDD----LIKSPTDEE--EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (483)
Q Consensus 231 -~~~-------~~~~~~~~----~~~~~~~~~--~~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~ 296 (483)
+.. .+.+.... ....+.... .......+..+...+.+.+. ..++.+.....+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae---------~~g~~~~~~~~~~~~l- 168 (380)
T d2gmha1 99 GAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE---------ALGVEVYPGYAAAEIL- 168 (380)
T ss_dssp TCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH---------HTTCEEETTCCEEEEE-
T ss_pred ccccccceecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHh---------hccceeeeecceeeee-
Confidence 111 11111111 000111000 00001123334444554444 5677888788888776
Q ss_pred ccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCC--CccCCCCcccCCCCeeeecCCC
Q 011535 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGL--PFDNHKGIVPNIRGRVLKNISG 374 (483)
Q Consensus 297 ~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l--~~~~~~g~~~~~~G~v~v~~~~ 374 (483)
.++++.+..+.......... +..... ......+-++..+++.|.+......+ .+...... ....|.-..
T Consensus 169 -~~~~g~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~-~~~~G~~si---- 239 (380)
T d2gmha1 169 -FHEDGSVKGIATNDVGIQKD--GAPKTT-FERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC-EPQGGFQSI---- 239 (380)
T ss_dssp -ECTTSSEEEEEECCEEECTT--SCEEEE-EECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTS-CCCCGGGGC----
T ss_pred -eccCCceeeccccccccccc--cccccc-ccccccccccEEEEeeeCCCcchHHHHhhhhhcccc-ccccccccc----
Confidence 32466665555443332211 110000 01112456788888988765321000 00000111 111232111
Q ss_pred CCCcccCceeeeccCCCC-----CcchhHhhHHHHHHHHHHHHHHHhcCcC
Q 011535 375 DSSQVENGLYVCGWLKRG-----PTGIIATNLYCAEETVASISEDLEQGVL 420 (483)
Q Consensus 375 ~~~t~~p~vya~Gd~~~g-----~~~~~~~a~~~g~~~a~~I~~~l~~~~~ 420 (483)
-....||+..+||++.- ..|+. .||..|+.+|+.|.+.|..+..
T Consensus 240 -p~l~~~G~lLVGDAAG~vnP~~g~GI~-~Am~SG~lAAeai~~al~~~~~ 288 (380)
T d2gmha1 240 -PKLTFPGGLLIGCSPGFMNVPKIKGTH-TAMKSGTLAAESIFNQLTSENL 288 (380)
T ss_dssp -CCCEETTEEECTTTTCCCBTTTTBCHH-HHHHHHHHHHHHHHHHHTCCCC
T ss_pred -cccccCCeeEEeccccccchhhcCCee-eeeccHHHHHHHHHHHHHcCCc
Confidence 12356899999999742 24666 8999999999999999987644
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.90 E-value=0.0027 Score=57.66 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=28.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||+|++|+-+|..|++ .|. +|+|+.|++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~--------------------~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 69999999999999999986 565 6999998863
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=96.86 E-value=0.00037 Score=66.19 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+.+++||||+|+||..+|.+|++.+ .+|+|+|+.+
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG~ 35 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGG 35 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCC--CeEEEEEccC
Confidence 3679999999999999999999998 9999999985
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0039 Score=57.99 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=64.2
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCC-------CCC--C
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS-------VPV--N 350 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~-------~~~--~ 350 (483)
+.++.++.......+. .++++.+....... ..+++...+.++.||+|||--. ++. .
T Consensus 155 ~~~v~~~~~~~~~~l~--~~~~~~~~g~~~~~-------------~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~t 219 (330)
T d1neka2 155 KNHTTIFSEWYALDLV--KNQDGAVVGCTALC-------------IETGEVVYFKARATVLATGGAGRIYQSTTNAHINT 219 (330)
T ss_dssp HTTCEEECSEEEEEEE--ECTTSCEEEEEEEE-------------TTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCS
T ss_pred hcCCeEEEEEEEEEee--eeccccceeeeeEE-------------ccCCcEEEEeccEEEEcCCCccccccCcCCCCccE
Confidence 4456666665555554 21345444333221 2367778899999999999332 110 0
Q ss_pred C--CCccCCCC---------cccCC-CCeeeecCCCCCCcccCceeeeccCCC-C--------CcchhHhhHHHHHHHHH
Q 011535 351 G--LPFDNHKG---------IVPNI-RGRVLKNISGDSSQVENGLYVCGWLKR-G--------PTGIIATNLYCAEETVA 409 (483)
Q Consensus 351 ~--l~~~~~~g---------~~~~~-~G~v~v~~~~~~~t~~p~vya~Gd~~~-g--------~~~~~~~a~~~g~~~a~ 409 (483)
+ +.+.-..| ...+. .....++... .....|++|++|+|+. | +..+. .++-.|+.++.
T Consensus 220 GdG~~~a~~aGa~l~d~~~~~~~~~~~~~~~~~~~g-~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~-~~~v~g~~ag~ 297 (330)
T d1neka2 220 GDGVGMAIRAGVPVQDMMGGIPTKVTGQALTVNEKG-EDVVVPGLFAVGEIACVSVHGANRLGGNSLL-DLVVFGRAAGL 297 (330)
T ss_dssp CHHHHHHHTTTCCEESECCBEEBCTTCEEEEECSSS-CEEEEEEEEECSSSEECSSSTTSCCTTHHHH-HHHHHHHHHHH
T ss_pred eHHHHHHHHcCCCccccccccccccccceeecccCC-CceecccccccCcccccccccccccccccHH-HHHHHHHHHHH
Confidence 0 00000111 11111 1111222221 3345799999999863 2 22333 57777888888
Q ss_pred HHHHHHhcC
Q 011535 410 SISEDLEQG 418 (483)
Q Consensus 410 ~I~~~l~~~ 418 (483)
.+...+...
T Consensus 298 ~~~~~~~~~ 306 (330)
T d1neka2 298 HLQESIAEQ 306 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 888877653
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.67 E-value=0.00066 Score=57.06 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.|+|+|||+|..|..+|..|.+.+ ++|+|+||+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g--~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCh
Confidence 589999999999999999999999 9999999884
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=96.57 E-value=0.00099 Score=63.89 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+.+++||||||+||+.+|.+|++.+ +.+|+|+|+.+.
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~-~~~VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENP-KIKVLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTST-TCCEEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCC-CCeEEEEcCCCC
Confidence 4599999999999999999999874 579999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.56 E-value=0.0009 Score=56.59 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=31.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+++|+|||+|..|+.+|..|+++| ++|+++++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CEEEEEECCH
Confidence 479999999999999999999999 9999999864
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.53 E-value=0.0053 Score=55.07 Aligned_cols=45 Identities=11% Similarity=-0.124 Sum_probs=32.6
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSV 347 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~ 347 (483)
+.|+++++++.+.++. . ++.+..|+. .++ ++.||.||.|+|.-..
T Consensus 163 ~~Gv~i~~~~~V~~i~--~--~~~~~~V~t------------------~~g-~i~a~~vV~AaG~~s~ 207 (276)
T d1ryia1 163 MLGAEIFEHTPVLHVE--R--DGEALFIKT------------------PSG-DVWANHVVVASGVWSG 207 (276)
T ss_dssp HTTCEEETTCCCCEEE--C--SSSSEEEEE------------------TTE-EEEEEEEEECCGGGTH
T ss_pred HcCCEEecceEEEeEE--e--ecceEEEec------------------CCe-EEEcCEEEECCCccHH
Confidence 6789999999999997 3 444444432 222 7899999999996543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.51 E-value=0.004 Score=55.41 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..++|+|||+|++|+-+|..|++ .|. +|+|+.|+.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~--------------------~G~-~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRD--------------------AGV-DVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCC
Confidence 45799999999999999999986 565 799999864
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=96.43 E-value=0.0011 Score=63.27 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=33.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
....+++||||||+||+.+|.+|++.+ +++|+|+|+.+.
T Consensus 14 ~~~tyD~IIVGsG~aG~vlA~rLse~~-~~~VLvLEaG~~ 52 (385)
T d1cf3a1 14 SGRTVDYIIAGGGLTGLTTAARLTENP-NISVLVIESGSY 52 (385)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHTTST-TCCEEEEESSCC
T ss_pred cCCeEEEEEECcCHHHHHHHHHHHHCC-CCeEEEECCCCC
Confidence 334589999999999999999999863 589999999864
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.014 Score=45.79 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
-..++|+|||+|.+.+..|..|.+.. -+|+|+-+.+..- ..+.. .++.....+++++.++.+
T Consensus 28 ~~gk~V~VvGgG~sA~~~A~~L~~~a--~~V~li~r~~~~~------------~~~~~---~~~~~~~~~I~v~~~~~v 89 (126)
T d1fl2a2 28 FKGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK------------ADQVL---QDKLRSLKNVDIILNAQT 89 (126)
T ss_dssp GBTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC------------SCHHH---HHHHHTCTTEEEESSEEE
T ss_pred cCCceEEEEeCCHHHHHHHHhhhccC--CceEEEecccccc------------ccccc---ccccccccceeEEcCcce
Confidence 46799999999999999999999987 8999998765421 11122 233445567999999876
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=96.35 E-value=0.01 Score=53.38 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=19.0
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
.|+|||+|.+|+-+|..|++
T Consensus 5 DvvIIGaGi~Gls~A~~La~ 24 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAK 24 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 59999999999999999997
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.24 E-value=0.0014 Score=57.55 Aligned_cols=140 Identities=36% Similarity=0.552 Sum_probs=103.8
Q ss_pred ecCeEEEeeecCCCCCCCCCccCCCCcccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHH
Q 011535 334 DCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISE 413 (483)
Q Consensus 334 ~~D~vi~a~G~~~~~~~~l~~~~~~g~~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~ 413 (483)
.+|.|++|+|..+......+-... .....+...... .....+..+..||...++.++++.++.++..++..+..
T Consensus 89 ~~d~v~~a~Ga~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~vvg~~~~~a~~~a~~~~~ 162 (230)
T d1cjca2 89 AYHAVVLSYGAEDKSRPIDPSVPF-----DPKLGVVPNMEG-RVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ 162 (230)
T ss_dssp HSSEEEECCCCCEECCCCCTTSCC-----BTTTTBCCEETT-EETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhceEEEEeecccccccccccccc-----cccccccccccc-eeecccccccccccccCceeEEeccchhhHHHHHHHHH
Confidence 479999999987643221111110 000111111000 12345788999999888888888889999999988888
Q ss_pred HHhcCcCCCCCCCCCCChhhHHHHHhcCCCcccchhhHHhhhHHHHHccccCCCCcccccCHHHHHhhh
Q 011535 414 DLEQGVLASSSGLPKPGREGLLQLLDNRNVRPVPFSAWEKIDSEEKRLGSLRNKPKEKLTTYEDLLKVA 482 (483)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~~~~r~k~~~~~~~~~~~ 482 (483)
+.....++.. .++....+..+|..+++.+++|.+|++||..|+..|+..||+|+|+++++|||+++
T Consensus 163 ~~~~~~~~~~---~~~~~~~i~~~L~~~gv~~V~~~~w~~Id~~E~~~G~~~Gk~R~k~~~~~eml~~~ 228 (230)
T d1cjca2 163 DLKAGHLPSG---PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLL 228 (230)
T ss_dssp HHHHTCSCCS---CCCTHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHHHHTSSCCCCCCHHHHHHHT
T ss_pred HhhhcccCCC---CCCchHHHHHHHHhcCCCeeccccHHHHHHHHHHhCcccCCCeEeecCHHHHHHhh
Confidence 8876544443 25677888899999999999999999999999999999999999999999999875
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.22 E-value=0.00093 Score=59.06 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
..++|+|||+|++|+.+|..|++ .+ -+|+++.++..+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~--------------------~G-~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLME--------------------SG-YTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHH--------------------hc-cceeeEeecccc
Confidence 67899999999999999999986 45 479999988754
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=96.22 E-value=0.015 Score=50.61 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.8
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
.|+|||+|+.|+|.|...++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR 23 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQ 23 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHH
T ss_pred cEEEECcCHHHHHHHHHHHH
Confidence 59999999999999999987
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.13 E-value=0.0017 Score=55.93 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=52.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEEceEE
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~ 99 (483)
++|.|||.|+.|+.+|..|+++| ++|+.+|.++..-..+..|..|-+. ......+.+......+.+..+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g--~~V~g~D~n~~~i~~ln~g~~p~~e--~~~~~~l~~~~~~~~~~~~~~------- 69 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVE--PGLEALLQQGRQTGRLSGTTD------- 69 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTCCSSCC--TTHHHHHHHHHHTTCEEEESC-------
T ss_pred CEEEEECCCHhHHHHHHHHHhCC--CcEEEEeCCHHHHHHhcccCCcccc--hhhhhhhhhhhcccccccCCC-------
Confidence 57999999999999999999999 9999999875422222223323221 112233333333333322211
Q ss_pred EecceeeccCEEEEccCC
Q 011535 100 SLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 100 ~~~~~~~~yd~vvlAtG~ 117 (483)
..+....+|.+++|.+.
T Consensus 70 -~~~~i~~~d~i~i~VpT 86 (202)
T d1mv8a2 70 -FKKAVLDSDVSFICVGT 86 (202)
T ss_dssp -HHHHHHTCSEEEECCCC
T ss_pred -HHHHHhhCCEEEEecCc
Confidence 11122358999999997
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.12 E-value=0.0025 Score=50.74 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|+|.-|...|..|.+.+ ++|+++|+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~ 33 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDK 33 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCcceecCCh
Confidence 58999999999999999999999 9999999863
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.01 E-value=0.0013 Score=61.96 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
..+++||||||+||+.+|.+|++. .+|+|+|+.+.
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae~---~kVLvLEaG~~ 59 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSEK---YKVLVLERGSL 59 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTTT---SCEEEECSSBC
T ss_pred CCccEEEECccHHHHHHHHHhcCC---CCEEEEecCCC
Confidence 347999999999999999999874 89999999864
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.0027 Score=51.84 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=32.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
-..++|+|||||..|+.-|..|.+.| .+|+||.+.
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 46799999999999999999999999 999999754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.84 E-value=0.0056 Score=47.16 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
-..++|+|||+|..|..-|..|.+.+ .+|++++..
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~ 44 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALT 44 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESS
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence 46789999999999999999999999 999999754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0048 Score=50.86 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=32.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ 56 (483)
+||+|||+|.-|...|..|++.| ++|++++|.+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHHH
Confidence 58999999999999999999999 999999998753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.72 E-value=0.0065 Score=49.91 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+-+|+|||+|.+|+.|+..+.+.| .+|+++|.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~ 64 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDIN 64 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCc
Confidence 4679999999999999999999999 999999975
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.69 E-value=0.0068 Score=50.53 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+-+|+|||+|.+|+.||..+.+.| .+|+++|.++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~ 63 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAA 63 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHH
Confidence 3569999999999999999999999 99999998753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.63 E-value=0.004 Score=49.55 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
|+++|||+|..|..+|..|.+.+ ++|+++|.++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcH
Confidence 57999999999999999999999 9999999764
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.55 E-value=0.0031 Score=58.06 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=63.4
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCCCCCCCccCCCC
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~~l~~~~~~g 359 (483)
+.|+.+++++.+.+|. . +++++. +.+.. .+++.++++||.||+|++.... ..+.|+....
T Consensus 247 ~~g~~i~~~~~V~~I~--~-~~~~v~-v~~~~--------------~~~~~~~~~aD~VI~A~p~~~l--~~i~~~p~l~ 306 (370)
T d2iida1 247 DIQDKVHFNAQVIKIQ--Q-NDQKVT-VVYET--------------LSKETPSVTADYVIVCTTSRAV--RLIKFNPPLL 306 (370)
T ss_dssp HTGGGEESSCEEEEEE--E-CSSCEE-EEEEC--------------SSSCCCEEEESEEEECSCHHHH--TTSEEESCCC
T ss_pred hcCCccccCceEEEEE--E-eCCeEE-EEEEe--------------cCCCeEEEEeeEEEecCCHHHH--hhCccCCCCC
Confidence 3467788888888887 3 234332 22221 1455568999999999864321 1111111100
Q ss_pred c--------ccCCCCeeeecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHH
Q 011535 360 I--------VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASISED 414 (483)
Q Consensus 360 ~--------~~~~~G~v~v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~ 414 (483)
- ............. ..++..+||++||.+..+.+.+..|+.+|..+|.+|...
T Consensus 307 ~~~~~ai~~~~~~~~~~~~~~~--~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a 367 (370)
T d2iida1 307 PKKAHALRSVFTPYQFQHFSDP--LTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA 367 (370)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHH--HHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccccccchh--hhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHHhh
Confidence 0 0000000011111 112345699999987767666657999999999988654
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=95.18 E-value=0.032 Score=50.03 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
...|+|||+|++|+.+|..|++ ....+|+++.+++..
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~--------------------~~G~~V~vlE~~~~~ 69 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISK--------------------NPNVQVAIIEQSVSP 69 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--------------------STTSCEEEEESSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------ccCCeEEEEecCCCC
Confidence 3469999999999999999875 223479999988643
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.17 E-value=0.03 Score=44.06 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=47.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeEE
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 95 (483)
-+.++|+|||+|-+.+..|..|++.- -+|+||-|.+.+. . .+. ...++....+++++.++.+
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~~a--~~V~li~r~~~~r--------a----~~~---~~~~l~~~~nI~v~~~~~v 93 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFR--------A----SKI---MQQRALSNPKIDVIWNSSV 93 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------S----CHH---HHHHHHTCTTEEEECSEEE
T ss_pred hCCCEEEEEcCchHHHHHHHHHhCCC--CcEEEEEeccccc--------c----chh---hhhccccCCceEEEeccEE
Confidence 36799999999999999999999997 8999998776531 1 111 2344456678999999776
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.09 E-value=0.0062 Score=53.72 Aligned_cols=41 Identities=5% Similarity=-0.018 Sum_probs=32.4
Q ss_pred CcccCceeeeccCCCC--CcchhHhhHHHHHHHHHHHHHHHhcC
Q 011535 377 SQVENGLYVCGWLKRG--PTGIIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 377 ~t~~p~vya~Gd~~~g--~~~~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
.++.++||++||++.. |..+. .|+.+|..+|+.|+..++.+
T Consensus 303 ~~~~~~v~~~GD~~~~~~~~~~~-gA~~sG~~aA~~l~~~~~~~ 345 (347)
T d1b5qa1 303 RAPVGRVYFTGEHTSEHYNGYVH-GAYLSGIDSAEILINCAQKK 345 (347)
T ss_dssp HCCBTTEEECSGGGCSSCTTSHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCEEEEEccccCcCCCHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 4677999999998653 33344 58999999999999998765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.011 Score=50.24 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
-++|+|||+|.-|-..|..+++.| ++|+++|+++.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence 479999999999999999999999 99999998753
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.84 E-value=0.15 Score=46.85 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=30.6
Q ss_pred CCcccCceeeeccCCCCCcc-hhHhhHHHHHHHHHHHHHHHhcC
Q 011535 376 SSQVENGLYVCGWLKRGPTG-IIATNLYCAEETVASISEDLEQG 418 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~g~~~-~~~~a~~~g~~~a~~I~~~l~~~ 418 (483)
..++.|++|++||+.+.... ....+...+..++.++...+...
T Consensus 281 ~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~i~~~ 324 (356)
T d1jnra2 281 RMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFILEQ 324 (356)
T ss_dssp TBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhcCCccccCccccccccchhHHHHHHHHHcC
Confidence 34678999999998653221 22246778889999998888764
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.76 E-value=0.018 Score=46.45 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++++|+|||+|..|.++|..|+.++--.+++|+|.+.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 4679999999999999999999987334899999653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.73 E-value=0.019 Score=46.48 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=34.7
Q ss_pred cCCCCCCeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 14 ALSSNPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 14 ~~~~~~~~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+....++|.||| .|.-|-+.|..|.+.| ++|.++|+.+
T Consensus 4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G--~~V~~~d~~~ 43 (152)
T d2pv7a2 4 TINSDIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED 43 (152)
T ss_dssp CSCTTCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHcC--CCcEeccccc
Confidence 4555678999999 6999999999999999 9999999875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.69 E-value=0.013 Score=49.41 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+-++|+|||+|.-|...|..++..| ++|+++|+++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 4578999999999999999999999 9999999875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.51 E-value=0.025 Score=46.04 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 15 ~~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+..++++|+|||+|..|.++|..|...+ -.+++|+|.++
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEecc
Confidence 3456789999999999999998888776 23899998654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.024 Score=45.98 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=30.2
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
-+|+|+|.|..|..++..|.+.+ .+|+++|..+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~--~~v~vId~d~ 36 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcC--CCEEEEeccc
Confidence 46999999999999999999998 9999999764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.28 E-value=0.017 Score=43.75 Aligned_cols=37 Identities=14% Similarity=-0.089 Sum_probs=30.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.-..++|+|||+|.+|+-.|..|++.. .+++++.+.+
T Consensus 29 ~f~gK~VlVVG~g~Sa~dia~~l~~~a--k~v~~~~~r~ 65 (107)
T d2gv8a2 29 LFVGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLG 65 (107)
T ss_dssp GGTTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTT
T ss_pred hcCCCeEEEECCCCCHHHHHHHHHHhc--CEEEEEEecC
Confidence 346799999999999999999999987 6666666554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.15 E-value=0.024 Score=49.70 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..++|+|||+|.+|+-+|..|++ .+. +|+|+.|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~--------------------~G~-~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILAR--------------------KGY-SVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHH--------------------CCC-CEEEEeCCC
Confidence 45789999999999999999986 454 799999875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.05 E-value=0.024 Score=51.96 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=34.0
Q ss_pred ccCceeeeccCCCCCcchhHhhHHHHHHHHHHHHHHHhcC-cCCCC
Q 011535 379 VENGLYVCGWLKRGPTGIIATNLYCAEETVASISEDLEQG-VLASS 423 (483)
Q Consensus 379 ~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~~~l~~~-~~~~~ 423 (483)
..++|+.+|=++...---...++.+|-.+++.+++.+..+ ++|.+
T Consensus 264 ~~~~~~~~grl~~y~y~~m~~~i~~al~~~~~~~~~~~~~~~~~~~ 309 (314)
T d2bi7a1 264 NETNITFVGRLGTYRYLDMDVTIAEALKTAEVYLNSLTENQPMPVF 309 (314)
T ss_dssp TCSSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSC
T ss_pred cCCCcEEeecCccceecCHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Confidence 4589999998776444344478999999999999998776 55554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.93 E-value=0.04 Score=44.38 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+..+||.|||+|..|.++|+.|...+--.++.|+|..+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 45679999999999999999999987334799998653
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.81 E-value=0.038 Score=44.42 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.++|.|||+|..|.++|..|..++--.+++|+|.+
T Consensus 1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 37999999999999999999988733488999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.79 E-value=0.033 Score=45.63 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=30.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||.|.-|-+.|..|.+++ ++|+++|+++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCc
Confidence 58999999999999999999999 9999999863
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.054 Score=41.47 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=33.1
Q ss_pred CCCCeEEEECcc-----------HHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSG-----------PAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G-----------~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+..++|+|||+| +++..|+.+|.+.| ++++++..+|.
T Consensus 2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g--~~~IliN~NPe 49 (121)
T d1a9xa4 2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG--YETIMVNCNPE 49 (121)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT--CEEEEECCCTT
T ss_pred CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC--CeEEEEecChh
Confidence 356899999998 68999999999999 99999998875
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.74 E-value=0.029 Score=45.26 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
.+|+++|||||.+|.+-|..|.+ .|+ +|+++...
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~--------------------~GA-~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMP--------------------TGC-KLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGG--------------------GTC-EEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-EEEEEeCC
Confidence 78999999999999999999986 554 79998654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.53 E-value=0.022 Score=48.12 Aligned_cols=35 Identities=23% Similarity=0.083 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+++|+|||+|.-|.+.|..|++.+ .+|+|+.+++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g--~~V~l~~r~~ 40 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNE 40 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTE--EEEEEECSCH
T ss_pred eeceEEEECCCHHHHHHHHHHHHcC--CeEEEEEecH
Confidence 3468999999999999999999998 9999998763
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.032 Score=50.85 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=29.7
Q ss_pred CCcccCceeeeccCCC-CCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 376 SSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~-g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
..+.+++||+|||... +-.+.+..|+..|..+|+.|++++.+
T Consensus 407 ~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~~~G 449 (449)
T d2dw4a2 407 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG 449 (449)
T ss_dssp ---CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHHhcC
Confidence 4467899999998643 22233446999999999999998753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.28 E-value=0.15 Score=38.60 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcccccCCHHHHHHHhcCCCeeEEe
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~~~~f~~~el~~~~~~~~~~~~~ 237 (483)
.+++|+|||+|.+|..-|+.|.+ .++ +|+++.... .+++.++.....+.+.-
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~--------------------~ga-~v~v~~~~~-------~~~~~~~~~~~~i~~~~ 62 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLE--------------------AGA-RLTVNALTF-------IPQFTVWANEGMLTLVE 62 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--------------------TTB-EEEEEESSC-------CHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccC-------ChHHHHHHhcCCceeec
Confidence 68999999999999999999986 554 677776432 34666666655555554
Q ss_pred c
Q 011535 238 R 238 (483)
Q Consensus 238 ~ 238 (483)
+
T Consensus 63 ~ 63 (113)
T d1pjqa1 63 G 63 (113)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.22 E-value=0.05 Score=43.44 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=28.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||+|..|.++|..|+.++ -.++.++|..+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-cceEEEEeecc
Confidence 68999999999999999998876 24899998653
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.15 E-value=0.043 Score=45.79 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=29.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
++|+|||+|.-|.+.|..|++.+ .+|+|+.|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEe
Confidence 58999999999999999999999 99999965
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.14 E-value=0.06 Score=42.93 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=29.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+||+|||+|..|.++|..|+..+--.++.|+|.++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 48999999999999999999987334899998664
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.09 E-value=0.04 Score=46.56 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.0
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
++|+|||.|+.|+.+|..++ ++ ++|+.+|-++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g--~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQ--NEVTIVDILPS 33 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TT--SEEEEECSCHH
T ss_pred CEEEEECCChhHHHHHHHHH-CC--CcEEEEECCHH
Confidence 58999999999999998776 57 99999998764
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.079 Score=40.99 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=33.1
Q ss_pred CCCCeEEEECcc-----------HHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSG-----------PAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G-----------~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+..++|+|||+| +++..|+.+|.+.| ++++++..+|.
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g--~~~iliN~NP~ 52 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG--YRVINVNSNPA 52 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT--CEEEEECSCTT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC--CeEEEecCchH
Confidence 456899999998 58999999999999 99999998875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.99 E-value=0.063 Score=44.06 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=31.3
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||.|.-|-+.|+.|.+.++..+|..+|+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 57999999999999999999998667899998864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=92.89 E-value=0.085 Score=42.89 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
..+++|.|||+|..|-++|+.|..++---++.|+|.+
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3467999999999999999999999833389999875
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.07 Score=43.91 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
....++|+|+|+|=|+-+++..|.+.+ .+|+|+.|.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt 50 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT 50 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccc--eEEEeccch
Confidence 346789999999999999999999998 899999875
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=92.59 E-value=0.078 Score=42.24 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||+|..|.++|..|..++--.++.|+|..+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 58999999999999999999987223899999664
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.57 E-value=0.066 Score=43.98 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 159 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.|+|+|||+|.+|.-+|..|.+ .+. +|+++.|+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~--------------------~g~-~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD--------------------SGI-KVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT--------------------TTC-EEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEEECCh
Confidence 5899999999999999999986 455 799999985
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.52 E-value=0.051 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.2
Q ss_pred CeEEEE-CccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVV-GSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvII-G~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+||+|| |+|--|.+.|..|++.| ++|++..|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G--~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC--CEEEEEECCH
Confidence 579999 67999999999999999 9999999874
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.083 Score=42.90 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+..+|.|||+|..|.++|+.|...+--.++.|+|.+
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 446899999999999999999998733489999865
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=92.50 E-value=0.086 Score=42.01 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+.||+|||+|..|-++|..|..++--.++.|+|.+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 35899999999999999999988733489998854
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.077 Score=44.95 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+++|+|+|| |..|-.++.+|.+++ ++|+++.|++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g--~~V~~~~R~~~ 38 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSS 38 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEcChh
Confidence 5689999996 999999999999999 99999998753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.083 Score=43.26 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.....+|+|+|+|+.|+.++..+...| .+|+++++++
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~ 61 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSS 61 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSS
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccch
Confidence 345679999999999999998888888 9999999764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.26 E-value=0.043 Score=48.93 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=58.2
Q ss_pred eEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC--CCCC--CccCC
Q 011535 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP--VNGL--PFDNH 357 (483)
Q Consensus 282 ~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~--~~~l--~~~~~ 357 (483)
|+++++++.+++|. . +++.+. +++.. .++.++++||.||+|+|..... +.++ ++.+.
T Consensus 233 g~~i~~~~~V~~I~--~-~~~~~~-v~~~~---------------~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~ 293 (347)
T d2ivda1 233 GDAAHVGARVEGLA--R-EDGGWR-LIIEE---------------HGRRAELSVAQVVLAAPAHATAKLLRPLDDALAAL 293 (347)
T ss_dssp GGGEESSEEEEEEE--C-C--CCE-EEEEE---------------TTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHH
T ss_pred hcccccCCEEEEEE--E-eCCeEE-EEEEc---------------CCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHH
Confidence 45677777777776 3 233332 22222 4555689999999999853211 1111 00000
Q ss_pred CCcccCCCCee---e-ecCCCCCCcccCceeeeccCCCCCcchhHhhHHHHHHHHHHHH
Q 011535 358 KGIVPNIRGRV---L-KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVASIS 412 (483)
Q Consensus 358 ~g~~~~~~G~v---~-v~~~~~~~t~~p~vya~Gd~~~g~~~~~~~a~~~g~~~a~~I~ 412 (483)
.+ .....|.. . .+. ..+..|++|++||...| .++- .++.+|..+|..|+
T Consensus 294 ~~-~~~~~~~~~~~~~~~~---~~~~~p~~~~~G~~~~g-~~~~-~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 294 VA-GIYNLGHLERVAAIDA---ALQRLPGLHLIGNAYKG-VGLN-DCIRNAAQLADALV 346 (347)
T ss_dssp HH-TCCBTTHHHHHHHHHH---HHHTSTTEEECSTTTSC-CSHH-HHHHHHHHHHHHHC
T ss_pred hh-cceecCcccceecccc---cccCCCCEEEecccccC-CCHH-HHHHHHHHHHHHhh
Confidence 00 00111211 0 111 23578999999998654 4554 68999999998874
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.86 E-value=0.095 Score=42.72 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=31.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+...+|+|+|+|+.|+.++..+...| .+|+++++++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~ 61 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDD 61 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC--Cccceecchh
Confidence 345678999999999999998888887 9999998763
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.85 E-value=0.12 Score=42.31 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.....+|+|+|+|+.|+.++..+...| .+|+++|+++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~ 60 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSP 60 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHH
Confidence 345578999999999999998888888 8999999764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.71 E-value=0.1 Score=41.45 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=28.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+||.|||+|..|-++|..|+.++--.++.|+|.+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence 5899999999999999999988633479999865
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.65 E-value=0.11 Score=41.24 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=28.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+||.|||+|..|.++|..|+.++--.++.|+|.+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 34 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 5899999999999999999888733489999865
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.62 E-value=0.053 Score=46.73 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.7
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.|+|||+|.+|+-+|..|++ .| .+|+|+.+++..
T Consensus 7 DviViGaG~~Gl~~A~~La~--------------------~G-~~V~vlE~~~~~ 40 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSV--------------------DG-KKVLHIDKQDHY 40 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CC-CCEEEEcCCCCC
Confidence 59999999999999999997 55 579999998654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.13 Score=42.17 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
+...+|+|+|+|+.|+.++..+...+ . +|+++|+++
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~ 61 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSA 61 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCH
Confidence 44578999999999999999998888 6 799998763
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.06 Score=48.75 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.5
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.++|||+|.+|+-+|..|++ .| .+|+|+.+++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~--------------------~g-~~V~iiEk~~~ 35 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKK--------------------LN-KKVLVIEKRNH 35 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGG--------------------GT-CCEEEECSSSS
T ss_pred cEEEECCcHHHHHHHHHHHh--------------------CC-CcEEEEECCCC
Confidence 68999999999999999986 34 46888887754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.40 E-value=0.18 Score=38.08 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
...+|.|||||-=|.-.|..+.+.| +++.++|+++.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG--~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLG--VEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCCCC
Confidence 4579999999999999999999999 99999998865
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.97 E-value=0.12 Score=41.16 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.5
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+||+|||+ |..|.++|..|+.++---++.|+|..
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~ 35 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE 35 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence 47999996 99999999999988722389999865
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=90.85 E-value=0.11 Score=37.96 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHhc
Q 011535 158 STDTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~ 180 (483)
++|+|+|+|.|-+|+-+|+.|.+
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~ 26 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLA 26 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEEEeECHHHHHHHHHHHH
Confidence 78999999999999999999986
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.76 E-value=0.16 Score=40.79 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+.||.|||+|..|-++|..|...+ -.++.|+|.++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEeccC
Confidence 468999999999999998777765 24889998653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.48 E-value=0.17 Score=41.88 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
....+|+|+|+|+.|+.++..+...| . +|+++|+++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~ 63 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSP 63 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCH
T ss_pred CCCCEEEEECCCccchhheecccccc--ccccccccccc
Confidence 34579999999999999999998888 7 799998764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=90.37 E-value=0.094 Score=42.63 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=30.4
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||-|.-|...|..|++++ ++|.++|+++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G--~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNP 33 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCC--CeEEEEeCCc
Confidence 47999999999999999999999 9999998763
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.37 E-value=0.12 Score=42.29 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
..++|+|+|+|=++-+++..|.+.+ . +|+|+.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g--~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSG--FEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTT--CCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeccc
Confidence 4689999999999999999999998 6 78999875
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.27 E-value=0.12 Score=42.00 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..++|+|||+|.+|..++..|.. .+.++++++.|+.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~--------------------~g~~~i~v~nRt~ 58 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVD--------------------RGVRAVLVANRTY 58 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHH--------------------HCCSEEEEECSSH
T ss_pred ccCeEEEECCCHHHHHHHHHHHh--------------------cCCcEEEEEcCcH
Confidence 67899999999999999999886 6888999999873
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.00 E-value=0.19 Score=40.89 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=31.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.....+|+|+|+|+.|+.++..+...| .++++++..+
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~ 64 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSE 64 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccch
Confidence 345689999999999999998888888 9998888653
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.80 E-value=0.22 Score=42.50 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=33.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.-..|+|+|||+|.+|+-+|..+++.+ .+++++=+.+.
T Consensus 29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~--~~~~~~~~~~~ 66 (235)
T d1w4xa2 29 DFSGQRVGVIGTGSSGIQVSPQIAKQA--AELFVFQRTPH 66 (235)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSCC
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhhh--ccccccccccc
Confidence 346799999999999999999999998 88888876654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.78 E-value=0.12 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.6
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCcc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~~ 215 (483)
.|+|||+|+.|+.+|..+++ .+ .+|.|+.+++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~--------------------~G-~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQ--------------------LG-FNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEEecCCc
Confidence 69999999999999999986 44 479999987653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.18 Score=35.30 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=31.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
|+|.|+|||-=|.-.+....+.| +++.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG--~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLG--IAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGT--EEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC--CEEEEEcCCCC
Confidence 68999999999999999999999 99999998754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=89.76 E-value=0.19 Score=40.65 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~ 53 (483)
...++|+|||+|-.|-.++..|...+ . +++++.|.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g--~~~i~v~nRt 57 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRT 57 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCc
Confidence 46789999999999999999999998 6 68888765
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=89.55 E-value=0.14 Score=45.36 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
+++||+|+|| |+.|-..+.+|.+.| ++|++++|.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G--~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEECCCc
Confidence 5789999998 999999999999999 99999998754
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.11 Score=47.45 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=27.5
Q ss_pred cccCceeeeccCC-CCCcchhHhhHHHHHHHHHHHHHHHhc
Q 011535 378 QVENGLYVCGWLK-RGPTGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 378 t~~p~vya~Gd~~-~g~~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
....+|+.+|+.. ..-.+.+..|+.+|..+|..|+..+..
T Consensus 299 ~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~~ 339 (383)
T d2v5za1 299 QPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGK 339 (383)
T ss_dssp CCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcCceEeccccccccCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 4556788888643 222334445889999999999888754
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.25 E-value=0.2 Score=40.10 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=29.8
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
+||.|||.|-.|...|..|.+++ ++|+++++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g--~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGR 33 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCC--CeEEEEcCch
Confidence 58999999999999999999999 9999887654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.26 Score=40.78 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
-..++|+|+|+|-+|-+++..|.+.+ -.+++|+.|.+
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~ 52 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRD 52 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcC-CceEeeeccch
Confidence 35689999999999999999999987 23899998864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.16 E-value=0.16 Score=41.75 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=28.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++++|||+|+.|.-+|..|++ .| .+|+++.|++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--------------------~G-~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--------------------KG-QSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHH--------------------CC-CEEEEEECCH
Confidence 789999999999999999996 45 4899988864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=88.95 E-value=0.19 Score=41.30 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|-|||-|.-|...|..|.+.+ ++|.++|+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G--~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCC--CeEEEEECCH
Confidence 57999999999999999999999 9999998763
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.89 E-value=0.21 Score=40.99 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
....++|+|+|+|-++-+++..|.+.+ .+|+|+.|+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~ 50 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRT 50 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESS
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccC--ceeeeccch
Confidence 446789999999999999999999876 899999876
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.68 E-value=0.19 Score=40.71 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|.|||-|--|...|..|.+++ ++|.++|+++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g--~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCC--CeEEEEECch
Confidence 68999999999999999999999 9999999763
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=88.65 E-value=0.22 Score=40.95 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..+|.|||-|.-|...|..|.+.+ ++|.++|+++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G--~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence 357999999999999999999999 9999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.56 E-value=0.25 Score=40.52 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.....+|+|+|+|+.|+.++..+...+ . +|+++|.++
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G--a~~Vi~~d~~~ 62 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRG--AGRIIGVGSRP 62 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT--CSCEEEECCCH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccc--ccccccccchh
Confidence 345678999999999999999888887 6 688888653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.38 E-value=0.22 Score=40.66 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++++|+|+|+|-+|--++..|.+ .++++|+|+.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~--------------------~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKN--------------------SGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHH--------------------TTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CCCCEEEEecccH
Confidence 56899999999999999988875 7888999998874
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.33 E-value=0.23 Score=39.47 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=27.5
Q ss_pred eEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 21 RVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 21 ~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
||+|||| |..|.++|..|..++---+++|+|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 7999996 99999999999988722478888854
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.00 E-value=0.22 Score=44.42 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.++||+|+|| |+.|-+.+.+|.++| ++|+++.|++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCCc
Confidence 4578999997 999999999999999 99999988643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=87.95 E-value=0.41 Score=39.17 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=30.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
......|+|+|+|+.|+.++..+...+ . +|++.|.++
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G--a~~Vi~~d~~~ 63 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDING 63 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCG
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC--Cceeeeeccch
Confidence 345678999999999999999999988 7 566677543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.75 E-value=0.27 Score=39.70 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=30.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.....+|+|+|+|+.|+.++..+...+ .+|++++.+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~ 60 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIG 60 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCC
Confidence 445679999999999999988888888 888888754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.62 E-value=0.3 Score=40.87 Aligned_cols=37 Identities=27% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.+...+|+|+|+|+.|+.++..+...+ ..+|+++|.+
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~ 59 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLN 59 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeeccc
Confidence 345679999999999999998887776 2378888754
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.53 E-value=0.36 Score=38.27 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=26.6
Q ss_pred CeEEEEC-ccHHHHHHHHHHHhc-CCCCeEEEEecC
Q 011535 20 LRVCVVG-SGPAGFYTAEKTLKA-HQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG-~G~aGl~aA~~l~~~-~~~~~v~lie~~ 53 (483)
+||.||| +|..|-++|..|..+ +-..++.|+|..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 5899999 599999999988654 323689999853
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=0.34 Score=40.01 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.+++|+|+|+|-+|--++..|.+ .++++++++.|+..
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~--------------------~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAI--------------------EGLKEIKLFNRRDE 53 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHhh--------------------cCCceEeeeccchH
Confidence 67999999999999888888875 78899999999853
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=87.11 E-value=0.38 Score=39.98 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCCCCeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.-..|+++|.| +|-.|..+|..|++.| .+|++++|+.
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~ 57 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKL 57 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccch
Confidence 34679999999 5899999999999999 9999999874
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=86.89 E-value=0.34 Score=38.88 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+.++|+|||+|.+|.-+|..|.. .+..++.++..+.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~--------------------~~~~el~L~D~~~ 41 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCAL--------------------RELADVVLYDVVK 41 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--------------------HTCCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--------------------CCCceEEEEEecc
Confidence 56899999999999988877664 4556788887553
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.37 Score=38.90 Aligned_cols=37 Identities=24% Similarity=0.093 Sum_probs=33.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
....|+++|||-|..|-.+|..|+..+ .+|+++|..|
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~dp 57 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEIDP 57 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCC--CeeEeeeccc
Confidence 346799999999999999999999999 9999999764
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=86.03 E-value=0.19 Score=42.66 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.8
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.|+|||+|+.|+.+|..+++ .+ .+|.+|.+..
T Consensus 5 DviIIGgGpAGl~aA~~aar--------------------~G-~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQ--------------------LG-LKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------HT-CCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CC-CeEEEEeccc
Confidence 59999999999999999986 34 4688998753
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=85.80 E-value=0.47 Score=37.38 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=26.9
Q ss_pred eEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 21 RVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 21 ~vvIIG-~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
||.||| +|..|-++|..|..++---++.|+|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 799999 69999999999999873337888874
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.72 E-value=0.28 Score=41.95 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.4
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
.|+|||+|+.|+.+|..+++ .+ .+|.|+.+..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~--------------------~G-~kV~viE~~~~ 37 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAK--------------------FD-KKVMVLDFVTP 37 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGG--------------------GC-CCEEEECCCCC
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeccCC
Confidence 69999999999999999987 44 46889986543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=85.67 E-value=0.24 Score=38.28 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecCCCCCCceeccc
Q 011535 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGV 64 (483)
Q Consensus 19 ~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~~~~ggl~~~g~ 64 (483)
+.+|+|+|||-+|-+.+.++... .+++ +..||.++..-|..-.|+
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k~G~~I~Gi 48 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEKVGRPVRGG 48 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTTTCEETTE
T ss_pred CceEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHhcCCEECCE
Confidence 46899999999999888776543 3465 455788887666555554
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.41 E-value=0.52 Score=43.19 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
.+++|+|.|| |+.|-..+..|.+++ ++|+++++...
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g--~~V~~~d~~~~ 50 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKN 50 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCCc
Confidence 5788999995 999999999999999 99999987543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=85.34 E-value=0.39 Score=38.09 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
..++|+|||+|++|.-+|..|+. ..-+.++.++.+.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~-------------------~~~~~elvL~D~~ 39 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQ-------------------QGIAEEFVIVDVV 39 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHH-------------------HTCCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-------------------cCCCcEEEEeecc
Confidence 45799999999999999998875 2235789998765
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.24 E-value=0.94 Score=35.61 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.4
Q ss_pred CCeEEEECc-cHHHHHHHHHHHhcC-CCCeEEEEecCCCCCCce
Q 011535 19 PLRVCVVGS-GPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLV 60 (483)
Q Consensus 19 ~~~vvIIG~-G~aGl~aA~~l~~~~-~~~~v~lie~~~~~ggl~ 60 (483)
+++|+|||| |+.|.....-|.++. |..++..+-.....|-.+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i 45 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM 45 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce
Confidence 579999998 999999999998654 788998887665555443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.23 E-value=0.7 Score=37.75 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=31.2
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
......|+|+|+|+.|+.++..+...+ ..+|+++|.++
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~ 64 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNK 64 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcH
Confidence 345568999999999999999998887 24799998764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.88 E-value=0.6 Score=37.89 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+...+|+|+|+|+.|+.++..++..+ ..+|+.+++.+
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~ 63 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNP 63 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchH
Confidence 345578999999999999999999887 24677787653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.76 E-value=0.39 Score=38.52 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=28.4
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecCc
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~~ 214 (483)
+|+|||.|+.|.-+|..|++ .| .+|+++.|+..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~--------------------~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCK--------------------QG-HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHH--------------------CC-CceEEEEcCHH
Confidence 79999999999999999986 34 48999998864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=0.45 Score=41.28 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
...+|+|||+|--|-.+|..|++.| + +++|+|...
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~G--vg~i~lvD~D~ 64 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAG--VGNLTLLDFDT 64 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEECCcc
Confidence 3579999999999999999999999 7 899998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=84.50 E-value=0.73 Score=37.53 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~-~v~lie~~~ 54 (483)
.+....|+|+|+|+.|+.++..+...+ . +|+++|.++
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G--~~~Vi~~d~~~ 62 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHK 62 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC--CceeeccCChH
Confidence 445678999999999999999999888 5 677777653
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.39 E-value=0.25 Score=44.59 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCcccCceeeeccCCC---C--Ccc-hhHhhHHHHHHHHHHHHHHHhc
Q 011535 376 SSQVENGLYVCGWLKR---G--PTG-IIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 376 ~~t~~p~vya~Gd~~~---g--~~~-~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
..++.||+|++||++. + ..| .++.++..|+.+|+.|.+.|.+
T Consensus 264 ~~~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~~ 311 (311)
T d2gjca1 264 AYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 311 (311)
T ss_dssp ECTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cEEccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678999999999753 1 112 3444678999999999999863
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=84.32 E-value=0.55 Score=36.22 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred CeEEEEcCCchHHHHHHHHhcCC
Q 011535 160 DTAVILGQGNVALDVARILLRPT 182 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~ 182 (483)
|+++|+|.|.+|..+|..|.+..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g 23 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG 23 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCC
Confidence 57999999999999999998733
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=83.88 E-value=0.4 Score=43.51 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=26.7
Q ss_pred cCceeeeccCCCC--C---cchhHhhHHHHHHHHHHHHHHHhc
Q 011535 380 ENGLYVCGWLKRG--P---TGIIATNLYCAEETVASISEDLEQ 417 (483)
Q Consensus 380 ~p~vya~Gd~~~g--~---~~~~~~a~~~g~~~a~~I~~~l~~ 417 (483)
.++|+.+||+++. | .|.- .++.++..+|..|...+.+
T Consensus 248 ~grv~LvGDAAH~~~P~~GqG~n-~al~Da~~La~~l~~~~~~ 289 (360)
T d1pn0a1 248 DERVFIAGDACHTHSPKAGQGMN-TSMMDTYNLGWKLGLVLTG 289 (360)
T ss_dssp TTTEEECGGGTEECCSTTCCHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred cCcEEEccCcccccccccCCCCc-ccHHHHHHHHHHHHHHhcC
Confidence 3579999999952 3 3443 6888888888877766554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.47 E-value=0.57 Score=37.17 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeec
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~ 212 (483)
.+++|+|||+|.+|.-+|..|+. ..-+.++.++.+.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~-------------------~~l~~el~L~Di~ 40 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMN-------------------QGIADEIVLIDAN 40 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHH-------------------HTCCSEEEEECSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHh-------------------cCCCceEEEEeec
Confidence 46799999999999999988875 2235678887765
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.40 E-value=0.28 Score=39.33 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAH 42 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~ 42 (483)
++.+|+|||| |..|.++|..|+...
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~ 27 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGS 27 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHH
Confidence 5679999995 999999999998654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.40 E-value=0.8 Score=37.18 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCe-EEEEecC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~-v~lie~~ 53 (483)
.....+|+|+|+|+.|+.++..+...+ .+ |++.+.+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g--~~~v~~~~~~ 62 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG--ASIIIAVDIV 62 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT--CSEEEEEESC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc--cceeeeeccH
Confidence 345678999999999999999888887 54 4555544
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=83.36 E-value=1 Score=37.66 Aligned_cols=35 Identities=34% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEec
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~ 52 (483)
.-..++|+|-|.|-.|.++|..|.+.| .+|++.|.
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~ 58 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAG--AQLLVADT 58 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEecc
Confidence 456799999999999999999999999 99998874
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.35 E-value=0.4 Score=41.11 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=26.5
Q ss_pred eEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
+|+|||+|+.|+.+|..+++ + .....+|.++.+..
T Consensus 3 ~viVIG~GpaG~~aA~~aa~-----------------~-~~~~~~V~liEk~~ 37 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAAT-----------------S-HPETTQVTVIDCDG 37 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----------------H-CTTTEEEEEEESSC
T ss_pred EEEEECCCHHHHHHHHHHHH-----------------c-CCCCCEEEEEecCC
Confidence 79999999999999987764 0 02235799998754
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.32 E-value=0.58 Score=37.24 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=28.9
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|.|||+|--|-+.|..|.+.+ .++++++++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~ 32 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSS 32 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSS
T ss_pred CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcCh
Confidence 57999999999999999999988 899998765
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.11 E-value=1.2 Score=40.33 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=68.2
Q ss_pred cceEEEeecCCcceeecccCCCCceEEEEEeeeeeeCCCCCceeeccCCceEEEecCeEEEeeecCCCC-------CCC-
Q 011535 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP-------VNG- 351 (483)
Q Consensus 280 ~~~i~~~~~~~~~~v~~~~~~~g~v~~v~~~~~~l~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~~~~-------~~~- 351 (483)
..++.++.++.+.+|..+. +++++.+|++.+. .+++...+.++.||+|.|..-.+ +..
T Consensus 230 ~~~~~l~~~a~V~~i~~~~-~~~r~~gV~~~d~-------------~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~ 295 (379)
T d2f5va1 230 EERFNLFPAVACERVVRNA-LNSEIESLHIHDL-------------ISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL 295 (379)
T ss_dssp EEEEEEECSEEEEEEEECT-TSSCEEEEEEEET-------------TTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCC
T ss_pred CCCCEEecCCEEEEEEEeC-CCCEEEEEEEEEC-------------CCCEEEEEeceEEEeccCccCCHHHHhhcccccc
Confidence 4568888888888887322 3456777776541 24566689999999999963221 000
Q ss_pred ---C-----CccCCCCc-cc--CCC-CeeeecCCCCCCcccCceeeeccCCCCCc----chhHhhHHHHHHHHHHHHHHH
Q 011535 352 ---L-----PFDNHKGI-VP--NIR-GRVLKNISGDSSQVENGLYVCGWLKRGPT----GIIATNLYCAEETVASISEDL 415 (483)
Q Consensus 352 ---l-----~~~~~~g~-~~--~~~-G~v~v~~~~~~~t~~p~vya~Gd~~~g~~----~~~~~a~~~g~~~a~~I~~~l 415 (483)
. .+....|. .. +.. -.-+||..+ ..-+++|+|++|-.. -|. ....+.++-|..+|+.|.+.+
T Consensus 296 ~~~~~~~~~~~~~~~g~h~mG~~~~~~~~vvd~~~-~v~g~~nlyv~d~sv-~p~~~~~nPt~t~~alA~r~a~~i~~~~ 373 (379)
T d2f5va1 296 GRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDS-RVFGFKNLFLGGCGN-IPTAYGANPTLTAMSLAIKSCEYIKQNF 373 (379)
T ss_dssp SSCCTTSCCSSSTTTTBTCBCSCTTTTTCSBCTTC-BBTTCSSEEECSGGG-CCSCCCSCSHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccCcccccccceeecccCCCCCCccCCCCC-cccccCCEEEeCCcc-cCCccccCcHHHHHHHHHHHHHHHHHhh
Confidence 0 00011110 00 000 011345543 444789999876432 121 112256666777888888886
Q ss_pred hcCc
Q 011535 416 EQGV 419 (483)
Q Consensus 416 ~~~~ 419 (483)
...+
T Consensus 374 ~~~~ 377 (379)
T d2f5va1 374 TPSP 377 (379)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=83.08 E-value=0.61 Score=37.40 Aligned_cols=37 Identities=24% Similarity=0.137 Sum_probs=33.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.-..|+++|+|=|..|-.+|.+|...+ .+|++.|.+|
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~G--a~V~V~E~DP 56 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDP 56 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCH
T ss_pred eecCCEEEEecccccchhHHHHHHhCC--CEEEEEecCc
Confidence 346799999999999999999999999 9999999775
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=82.93 E-value=0.57 Score=37.05 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.0
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
|+|+|||+|++|..+|..|..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~ 22 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIA 22 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHh
Confidence 789999999999999988774
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=82.85 E-value=0.47 Score=37.38 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.8
Q ss_pred CeEEEEcCCchHHHHHHHHhc
Q 011535 160 DTAVILGQGNVALDVARILLR 180 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~ 180 (483)
++|+|||+|++|..+|..|+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~ 22 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAA 22 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 589999999999999988774
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.46 E-value=0.88 Score=37.37 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=33.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCCC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~~ 55 (483)
-..++|.|||.|..|-..|..+...+ .+|..+++.+.
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g--~~v~~~d~~~~ 76 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTPK 76 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred ccCceEEEeccccccccceeeeeccc--ccccccccccc
Confidence 35789999999999999999999999 99999997653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=82.44 E-value=0.77 Score=41.74 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+|+|+|+|| |+.|-+.+..|.+++ ++|.++-|++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G--~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC--CeEEEEECCc
Confidence 5789999997 999999999999999 9999998764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=82.39 E-value=0.58 Score=37.96 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|+|+|-+|--++..|.+ .++ +|+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~--------------------~g~-~i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLS--------------------LDC-AVTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcc--------------------cce-EEEeccchH
Confidence 68999999999999999988875 566 599998874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.36 E-value=0.37 Score=41.11 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=19.0
Q ss_pred eEEEEcCCchHHHHHHHHhc
Q 011535 161 TAVILGQGNVALDVARILLR 180 (483)
Q Consensus 161 ~vvVIG~G~~g~e~A~~L~~ 180 (483)
+|+|||+|.+|+-+|..|++
T Consensus 2 kV~VIGaGi~GlstA~~L~~ 21 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHE 21 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred EEEEECchHHHHHHHHHHHH
Confidence 69999999999999999986
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=82.21 E-value=0.64 Score=36.57 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.6
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++|+|||+|.+|..+|..|.. +.-+.++.++.+..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~-------------------~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMAL-------------------RQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-------------------TTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHh-------------------cCCCCEEEEEeccC
Confidence 479999999999999988875 23357899988765
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.90 E-value=0.67 Score=37.85 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
-..++|+|+|+|-++-+++..|.+. -+|+|+.|+
T Consensus 16 ~~~k~vlIlGaGG~arai~~aL~~~---~~i~I~nR~ 49 (177)
T d1nvta1 16 VKDKNIVIYGAGGAARAVAFELAKD---NNIIIANRT 49 (177)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSS---SEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHccc---cceeeehhh
Confidence 4678999999999999999888654 489999875
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.49 E-value=0.52 Score=41.18 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=30.2
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|.|| |+.|-..+.+|.++| ++|+.+++..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g--~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CEEEEeechh
Confidence 67999998 999999999999998 9999998764
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.42 E-value=0.84 Score=41.40 Aligned_cols=35 Identities=23% Similarity=0.088 Sum_probs=31.6
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
..|+|+|.|| |+.|-.++..|.++| ++|..+++..
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g--~~V~~~~r~~ 42 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG--ATVKGYSLTA 42 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCC
Confidence 4689999995 899999999999999 9999999864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=81.39 E-value=0.47 Score=41.11 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
...+|+|||.|-+|.++|..|++ .|+.++++++...
T Consensus 29 ~~~~VliiG~GglGs~va~~La~--------------------~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLAS--------------------AGVGNLTLLDFDT 64 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHH--------------------HTCSEEEEECCCB
T ss_pred hCCCEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEECCcc
Confidence 45799999999999999999997 7999999998653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=81.33 E-value=0.82 Score=37.35 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 157 ~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
..+++|+|+|+|.+|+-++..+.. .|+++|.++.+++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~--------------------~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARS--------------------LGAENVIVIAGSP 63 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHH--------------------TTBSEEEEEESCH
T ss_pred CCCCEEEEECCCccchhheecccc--------------------ccccccccccccc
Confidence 368999999999999877766653 6777888887764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=81.25 E-value=0.74 Score=41.69 Aligned_cols=33 Identities=36% Similarity=0.421 Sum_probs=29.7
Q ss_pred CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 20 ~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|| |+.|-..+..|.+++ .+|+++|+..
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g--~~V~~~d~~~ 34 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG--HDVIILDNLC 34 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCC
Confidence 57999997 899999999999999 9999998654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.04 E-value=1.7 Score=37.09 Aligned_cols=80 Identities=20% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCCCCeEEEECcc-HHHHHHHHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 16 SSNPLRVCVVGSG-PAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 16 ~~~~~~vvIIG~G-~aGl~aA~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
+-..|.++|.||+ -.|.++|..|++.| .+|.+.+++.....-... +.-+....+++...+.+..+..+
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~-~~~Dv~~~~~v~~~~~~~~~~~g-------- 72 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADG--HKVAVTHRGSGAPKGLFG-VEVDVTDSDAVDRAFTAVEEHQG-------- 72 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSSCCCTTSEE-EECCTTCHHHHHHHHHHHHHHHS--------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCcchhcCceE-EEEecCCHHHHHHHHHHHHHhcC--------
Confidence 3467889999886 58999999999999 999999987653322111 21233344444444444433321
Q ss_pred EceEEEecceeeccCEEEEccCCC
Q 011535 95 LGSSVSLSELRQLYHVVVLAYGAE 118 (483)
Q Consensus 95 v~~~~~~~~~~~~yd~vvlAtG~~ 118 (483)
.-|.||-+.|..
T Consensus 73 ------------~iDiLVnnAG~~ 84 (237)
T d1uzma1 73 ------------PVEVLVSNAGLS 84 (237)
T ss_dssp ------------SCSEEEEECSCC
T ss_pred ------------CceEEEeeeccc
Confidence 357788888863
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.01 E-value=0.82 Score=40.93 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=29.9
Q ss_pred CCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 19 ~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
+|+|+|.|| |+.|-..+.+|.+++ .+|+.+++.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g--~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG--HEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCC
Confidence 479999997 999999999999998 999999864
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=80.89 E-value=0.92 Score=35.87 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.5
Q ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 20 ~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
++|.+||+|.-|-+.|..|.+.+ ..+|.+++++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~ 33 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRG 33 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSS
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCC
Confidence 57999999999999999998886 3788888765
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.88 E-value=0.76 Score=38.41 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 18 ~~~~vvIIG~-G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
++|+|+|+|| |+.|-+.+.+|.+.+...+|+.+-|.+
T Consensus 1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~ 38 (212)
T d2a35a1 1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA 38 (212)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence 4689999999 999999999999998223566665543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=80.70 E-value=0.58 Score=38.83 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=27.9
Q ss_pred CeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 160 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
++|+|||+|.-|.-+|..|++ ...+|++..|+.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~---------------------~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSK---------------------KCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHT---------------------TEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHH---------------------cCCeEEEEEecH
Confidence 579999999999999999985 345899988763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.35 E-value=1 Score=36.23 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|+|+|.+|+=++..+.. .+.++|.++.+++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~--------------------~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKA--------------------MGAAQVVVTDLSA 61 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESCH
T ss_pred CCCEEEEECCCccHHHHHHHHHH--------------------cCCceEEeccCCH
Confidence 67899999999999977766654 6777888877663
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.23 E-value=1.5 Score=35.39 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecCC
Q 011535 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~~ 54 (483)
.+....|+|+|+|..|+.++..++..+ ..+|++++.++
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~ 63 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK 63 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcH
Confidence 345578999999999999999999887 24777777654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.22 E-value=1 Score=32.72 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCCCCeEEEECccHHHHHH-HHHHHhcCCCCeEEEEecCCCCCCceecccCCCCCChHHHHHHHHHHHhcCCeEEEeCeE
Q 011535 16 SSNPLRVCVVGSGPAGFYT-AEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (483)
Q Consensus 16 ~~~~~~vvIIG~G~aGl~a-A~~l~~~~~~~~v~lie~~~~~ggl~~~g~~p~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 94 (483)
....++|-+||-|=+|+++ |..|.++| ++|+-.|.... .. . +.+...|+.+..+..
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~~~-----------------~~---~-~~L~~~Gi~v~~g~~ 61 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADG-----------------VV---T-QRLAQAGAKIYIGHA 61 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCS-----------------HH---H-HHHHHTTCEEEESCC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCCCC-----------------hh---h-hHHHHCCCeEEECCc
Confidence 3467899999999999999 89999999 99999986531 11 1 222345777665432
Q ss_pred EceEEEecceeeccCEEEEccCC
Q 011535 95 LGSSVSLSELRQLYHVVVLAYGA 117 (483)
Q Consensus 95 v~~~~~~~~~~~~yd~vvlAtG~ 117 (483)
. ......|.||+.++.
T Consensus 62 ~-------~~i~~~d~vV~S~AI 77 (96)
T d1p3da1 62 E-------EHIEGASVVVVSSAI 77 (96)
T ss_dssp G-------GGGTTCSEEEECTTS
T ss_pred c-------ccCCCCCEEEECCCc
Confidence 1 112357888888776
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=80.19 E-value=0.78 Score=37.25 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHhcCCccccccccchHHHHHHhcCCccEEEEEeecC
Q 011535 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (483)
Q Consensus 158 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~~di~~~~~~~l~~~~~~~V~li~r~~ 213 (483)
.+++|+|+|+|-+|--++..|.+ +.++|+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~---------------------~~~~i~I~nR~~ 51 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQ---------------------AQQNIVLANRTF 51 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHH---------------------TTCEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcc---------------------cCceeeeccchH
Confidence 67899999999999888877764 457899999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=80.09 E-value=1.2 Score=35.88 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=28.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Q 011535 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (483)
Q Consensus 17 ~~~~~vvIIG~G~aGl~aA~~l~~~~~~~~v~lie~~ 53 (483)
.....|+|+|+|+.|+.++..+...+ ...|++++++
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~ 66 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVK 66 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESS
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhc-Ccccccccch
Confidence 34578999999999999999888777 1356667765
|