Citrus Sinensis ID: 011537
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | 2.2.26 [Sep-21-2011] | |||||||
| Q08BY5 | 422 | JmjC domain-containing pr | yes | no | 0.629 | 0.720 | 0.409 | 3e-67 | |
| Q5ZHV5 | 425 | JmjC domain-containing pr | yes | no | 0.631 | 0.717 | 0.388 | 7e-64 | |
| Q8BFT6 | 427 | JmjC domain-containing pr | yes | no | 0.697 | 0.789 | 0.336 | 2e-58 | |
| Q9H9V9 | 463 | JmjC domain-containing pr | yes | no | 0.625 | 0.652 | 0.352 | 3e-58 | |
| Q9VJ97 | 425 | JmjC domain-containing pr | yes | no | 0.633 | 0.72 | 0.355 | 1e-51 | |
| O13977 | 464 | JmjC domain-containing pr | yes | no | 0.525 | 0.547 | 0.291 | 9e-25 | |
| Q623U2 | 397 | Bifunctional arginine dem | N/A | no | 0.507 | 0.617 | 0.262 | 1e-17 | |
| Q9M9E8 | 943 | F-box protein At1g78280 O | no | no | 0.492 | 0.252 | 0.236 | 2e-17 | |
| Q67XX3 | 502 | F-box protein At5g06550 O | no | no | 0.496 | 0.478 | 0.253 | 1e-16 | |
| Q6PFM0 | 403 | Bifunctional arginine dem | no | no | 0.546 | 0.655 | 0.265 | 1e-15 |
| >sp|Q08BY5|JMJD4_DANRE JmjC domain-containing protein 4 OS=Danio rerio GN=jmjd4 PE=2 SV=1 | Back alignment and function desciption |
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Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 196/344 (56%), Gaps = 40/344 (11%)
Query: 16 KEVSYSEFVEKYMAKNQPVVLTG-LMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVAD 74
+E+ YS+F + Y+ NQP + + ++W K WVT G+PNL F ++ V VA+
Sbjct: 34 REIPYSKFFKNYLIPNQPCMFSKKFTEEWNCRKKWVTAEGKPNLQRLLHEFDETPVPVAN 93
Query: 75 CGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYV 134
C ++E+ + M EF++ W E+ ++N ++S K LYLKDWH + +PE+
Sbjct: 94 CSVKEYNANPKQIMPFKEFIQYWRES--IQNGHSSP-----KGCLYLKDWHMQRNFPEHN 146
Query: 135 AYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFR 194
Y+TP+ F DWLN Y D + DYRFVYMG KGSWTP HADVFR
Sbjct: 147 IYKTPIYFSSDWLNEYWDTIEV---------------DDYRFVYMGPKGSWTPFHADVFR 191
Query: 195 SYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETD------FPGFKKTLW 248
SYSWSAN+CG+KKWL P Q + L+ C N+ DV+ + F++
Sbjct: 192 SYSWSANICGRKKWLLYPPGQ-----EDFLRDCHGNLAYDVTAPILQDKGLYAQFEEACQ 246
Query: 249 -LECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLLRDYNEAKEYIE 307
LE QE EIIFVPSGW+HQV+NLEDTISINHNW NG NL +W L + + + IE
Sbjct: 247 PLEIIQEAGEIIFVPSGWHHQVYNLEDTISINHNWLNGCNLDIMWQFLQDELSSVQREIE 306
Query: 308 DIRDICDDFEGLCQRNLAANTGMNFYDFFSFL-----SRFSLVN 346
+ RD D + CQ + + TG+++ +F SFL +R S +N
Sbjct: 307 EWRDTMDTWHQHCQVIMKSCTGIDYAEFASFLKTIANNRISFLN 350
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Danio rerio (taxid: 7955) |
| >sp|Q5ZHV5|JMJD4_CHICK JmjC domain-containing protein 4 OS=Gallus gallus GN=JMJD4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BFT6|JMJD4_MOUSE JmjC domain-containing protein 4 OS=Mus musculus GN=Jmjd4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9H9V9|JMJD4_HUMAN JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9VJ97|JMJD4_DROME JmjC domain-containing protein 4 homolog OS=Drosophila melanogaster GN=CG7200 PE=2 SV=1 | Back alignment and function description |
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| >sp|O13977|JMJ1_SCHPO JmjC domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=jmj1 PE=4 SV=1 | Back alignment and function description |
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| >sp|Q623U2|JMJD6_CAEBR Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 OS=Caenorhabditis briggsae GN=psr-1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9M9E8|FB92_ARATH F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q67XX3|FB252_ARATH F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PFM0|JMJD6_DANRE Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio GN=jmjd6 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | ||||||
| 255540585 | 462 | transcription factor, putative [Ricinus | 0.950 | 0.993 | 0.715 | 0.0 | |
| 225456953 | 493 | PREDICTED: jmjC domain-containing protei | 0.993 | 0.973 | 0.676 | 0.0 | |
| 224135869 | 553 | predicted protein [Populus trichocarpa] | 0.995 | 0.869 | 0.616 | 0.0 | |
| 297733739 | 498 | unnamed protein product [Vitis vinifera] | 0.993 | 0.963 | 0.665 | 0.0 | |
| 449441003 | 480 | PREDICTED: jmjC domain-containing protei | 0.950 | 0.956 | 0.679 | 0.0 | |
| 449477666 | 480 | PREDICTED: jmjC domain-containing protei | 0.950 | 0.956 | 0.677 | 0.0 | |
| 356507271 | 492 | PREDICTED: jmjC domain-containing protei | 0.985 | 0.967 | 0.638 | 1e-180 | |
| 357461893 | 525 | JmjC domain-containing protein [Medicago | 0.964 | 0.887 | 0.591 | 1e-166 | |
| 297797295 | 458 | hypothetical protein ARALYDRAFT_332532 [ | 0.931 | 0.982 | 0.602 | 1e-162 | |
| 42568723 | 462 | transcription factor jumonji (jmjC) doma | 0.925 | 0.967 | 0.600 | 1e-161 |
| >gi|255540585|ref|XP_002511357.1| transcription factor, putative [Ricinus communis] gi|223550472|gb|EEF51959.1| transcription factor, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/468 (71%), Positives = 385/468 (82%), Gaps = 9/468 (1%)
Query: 1 MGIRIGGGQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLF 60
MGI IGG +IEK+NGKE+SY EFVE+Y++KNQPVVLTGLMD+WRACKDWVT++G PNL F
Sbjct: 1 MGIEIGG-RIEKVNGKELSYDEFVERYLSKNQPVVLTGLMDNWRACKDWVTDDGYPNLQF 59
Query: 61 FSTHFGKSKVQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLY 120
FSTHFGKS+VQVADCG REFTDQKRVEM+VSEF+ +W+E NAS +E+N KS+LY
Sbjct: 60 FSTHFGKSRVQVADCGTREFTDQKRVEMTVSEFIDHWIE------YNASNHESNSKSLLY 113
Query: 121 LKDWHFAKEYPEYVAYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMG 180
LKDWHF KEYPEYVAYRTPL FCDDWLN YLDH+R+H++P++YQ++N+IC SDYRFVYMG
Sbjct: 114 LKDWHFVKEYPEYVAYRTPLPFCDDWLNPYLDHYRMHRNPDTYQENNEICSSDYRFVYMG 173
Query: 181 AKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDF 240
AKGSWTPLHADVFRSYSWSAN+CGKKKW+FLSPSQCHLVFDRN+K VYNIF+DVSET F
Sbjct: 174 AKGSWTPLHADVFRSYSWSANICGKKKWIFLSPSQCHLVFDRNMKNTVYNIFEDVSETQF 233
Query: 241 PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLLRDYN 300
PGFKK +WLEC Q QNEIIFVPS WYHQVHNLEDTISINHNWFN YNLSWVWDLL DY
Sbjct: 234 PGFKKAIWLECIQNQNEIIFVPSRWYHQVHNLEDTISINHNWFNAYNLSWVWDLLWEDYK 293
Query: 301 EAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFSFLSRFSLVNVVILFHLRRDYENQ 360
EAKEYIEDIRDICDDFEG+CQRNLAANTGMNF DFF FL+ F L NVV + RD E
Sbjct: 294 EAKEYIEDIRDICDDFEGVCQRNLAANTGMNFIDFFIFLAPFFLANVVQHYCRDRDSETS 353
Query: 361 IWSSSPVARHLALNLVSIQKIALKMKSVNDLAGSFGFFMYLKETLDDPEFLKLCMGFCRT 420
+S V RHLA NL SIQKIALKM+S G+ G+F+ LKE ++DP+FLKL M R
Sbjct: 354 -HRTSKVTRHLAFNLASIQKIALKMRSTEGETGTGGYFLDLKEIVEDPKFLKLYMDMGRI 412
Query: 421 YGMIHEEEKWTC-EIKKALMLDFEDYDSLISSPEDLVKFIDFAAGKFS 467
YGMIHE++ T +I+KA+ D DY I + ED VKF+D+ K
Sbjct: 413 YGMIHEQQSRTNRDIEKAMEDDILDYSFSICTLEDFVKFVDYTVRKLG 460
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456953|ref|XP_002278337.1| PREDICTED: jmjC domain-containing protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224135869|ref|XP_002322181.1| predicted protein [Populus trichocarpa] gi|222869177|gb|EEF06308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297733739|emb|CBI14986.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449441003|ref|XP_004138273.1| PREDICTED: jmjC domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449477666|ref|XP_004155086.1| PREDICTED: jmjC domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356507271|ref|XP_003522392.1| PREDICTED: jmjC domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357461893|ref|XP_003601228.1| JmjC domain-containing protein [Medicago truncatula] gi|355490276|gb|AES71479.1| JmjC domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297797295|ref|XP_002866532.1| hypothetical protein ARALYDRAFT_332532 [Arabidopsis lyrata subsp. lyrata] gi|297312367|gb|EFH42791.1| hypothetical protein ARALYDRAFT_332532 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|42568723|ref|NP_201113.2| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|51970546|dbj|BAD43965.1| unnamed protein product [Arabidopsis thaliana] gi|66792698|gb|AAY56451.1| At5g63080 [Arabidopsis thaliana] gi|332010314|gb|AED97697.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 483 | ||||||
| TAIR|locus:2161967 | 462 | AT5G63080 "AT5G63080" [Arabido | 0.925 | 0.967 | 0.604 | 5.8e-153 | |
| ZFIN|ZDB-GENE-060929-636 | 422 | jmjd4 "jumonji domain containi | 0.434 | 0.497 | 0.463 | 2.2e-50 | |
| FB|FBgn0032671 | 425 | CG7200 [Drosophila melanogaste | 0.633 | 0.72 | 0.326 | 2.4e-44 | |
| MGI|MGI:2144404 | 427 | Jmjd4 "jumonji domain containi | 0.449 | 0.508 | 0.389 | 2.2e-43 | |
| WB|WBGene00011563 | 367 | jmjd-4 [Caenorhabditis elegans | 0.517 | 0.681 | 0.366 | 8e-37 | |
| POMBASE|SPAC25H1.02 | 464 | jmj1 "histone demethylase Jmj1 | 0.645 | 0.672 | 0.288 | 3.4e-26 | |
| UNIPROTKB|Q623U2 | 397 | psr-1 "Bifunctional arginine d | 0.341 | 0.415 | 0.280 | 1e-14 | |
| TAIR|locus:2144153 | 502 | AT5G06550 "AT5G06550" [Arabido | 0.360 | 0.346 | 0.303 | 7.9e-14 | |
| DICTYBASE|DDB_G0280485 | 536 | jcdH "transcription factor jum | 0.122 | 0.110 | 0.468 | 2.8e-13 | |
| FB|FBgn0038948 | 408 | PSR "phosphatidylserine recept | 0.463 | 0.549 | 0.242 | 8.9e-13 |
| TAIR|locus:2161967 AT5G63080 "AT5G63080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 280/463 (60%), Positives = 349/463 (75%)
Query: 1 MGIRIGGGQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLF 60
MGI+I G QIE++NGKE+SY +F E+Y+AKNQPVV++ L +DWRA +DWV+ENG PNL
Sbjct: 1 MGIQIIG-QIERINGKELSYGDFAERYLAKNQPVVISDLTEDWRAREDWVSENGNPNLHV 59
Query: 61 FSTHFGKSKVQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLY 120
F+THFGKS+VQVADC REFTDQKR+EMSV+EFV+ W +E +SVLY
Sbjct: 60 FATHFGKSRVQVADCDTREFTDQKRLEMSVTEFVEQWTNKDSIE-----------ESVLY 108
Query: 121 LKDWHFAKEYPEYVAYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMG 180
LKDWHF KEYP+Y AY+TP +F DDWLN+YLD++++H+D +S+QK + I CSDYRFVYMG
Sbjct: 109 LKDWHFVKEYPDYTAYQTPPLFSDDWLNVYLDNYQMHEDRDSFQKYDQISCSDYRFVYMG 168
Query: 181 AKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETDF 240
KGSWTPLHADVFRSYSWSANVCGKK+WLFL P Q HLV+DR +K CVY+IF++V+ET F
Sbjct: 169 GKGSWTPLHADVFRSYSWSANVCGKKRWLFLPPPQSHLVYDRYMKNCVYDIFEEVNETKF 228
Query: 241 PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLLRDYN 300
PGFKKT WLEC QE EIIFVPSGW+HQV+NLEDTISINHNW N YNLSWVWDLL +DY
Sbjct: 229 PGFKKTTWLECIQEPGEIIFVPSGWHHQVYNLEDTISINHNWLNAYNLSWVWDLLWKDYK 288
Query: 301 EAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFSFLSRFSLVNVVILFHLRRDYENQ 360
+ +E IEDIRDICDDFE +CQRNLAANTGMN DFF F+SRFSL N+V+L ++N
Sbjct: 289 DTEESIEDIRDICDDFEAICQRNLAANTGMNLNDFFLFMSRFSLGNMVLLQSYSDKHKNL 348
Query: 361 IWSSSPVARHLALNLVSIQKIALKMKSVNDLAGSFGFFMYLKETLDDPEFLKLCMGFCRT 420
S +A++L +NL +I K+ +KM S + ++ L+ETL+DP+FL+ RT
Sbjct: 349 NSCSLAMAQNLLMNLSTILKVMMKMISAGGVTAE-EVYLDLRETLEDPQFLRFVRDMGRT 407
Query: 421 YGMIH-EEEKWTCEIKKAL--MLDFEDYDSLISSPEDLVKFID 460
Y IH EEE K+ L + + I SP+DLV+ I+
Sbjct: 408 YARIHMEEEDQFLSSKELLQKLSGLAGPNMQICSPKDLVEMIN 450
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| ZFIN|ZDB-GENE-060929-636 jmjd4 "jumonji domain containing 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| FB|FBgn0032671 CG7200 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| MGI|MGI:2144404 Jmjd4 "jumonji domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| WB|WBGene00011563 jmjd-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC25H1.02 jmj1 "histone demethylase Jmj1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q623U2 psr-1 "Bifunctional arginine demethylase and lysyl-hydroxylase psr-1" [Caenorhabditis briggsae (taxid:6238)] | Back alignment and assigned GO terms |
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| TAIR|locus:2144153 AT5G06550 "AT5G06550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0280485 jcdH "transcription factor jumonji, jmjC domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0038948 PSR "phosphatidylserine receptor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 483 | |||
| pfam13621 | 247 | pfam13621, Cupin_8, Cupin-like domain | 5e-26 | |
| pfam02373 | 114 | pfam02373, JmjC, JmjC domain, hydroxylase | 2e-16 |
| >gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 64/283 (22%)
Query: 21 SEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGI--- 77
EF +Y+AK +PVVL G DW A K W L + +G +V V
Sbjct: 2 EEFFREYVAKRKPVVLKGAAKDWPAVKKW-----TDALDYLKEKYGDVEVSVEVTPPGRA 56
Query: 78 --------REFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKE 129
+ K M +F+ + + ++ LYL+ + E
Sbjct: 57 DRFFYNDDLSGVNFKEERMPFKDFL----------DLLRAGSDQETPPYLYLQSSNLDSE 106
Query: 130 YPEYVAYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLH 189
+P + L PE++ K +++G G+ T LH
Sbjct: 107 FPGL-----------------REDNDLPLAPEAFGKLPQAVN-----LWIGNGGTTTSLH 144
Query: 190 ADVFRSYSWSAN----VCGKKKWLFLSPSQ-CHL---VFDRNLKGCVYNI-FDDVSETDF 240
D N V G+K++ PSQ +L DR + D+ F
Sbjct: 145 YD------AYENLYCVVSGRKRFTLFPPSQVPNLYPGPLDRTGGQPFSLVDPDNPDLEKF 198
Query: 241 PGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED-TISINHNW 282
P FK L E + +++P+GW+H V +L+D I++N+ +
Sbjct: 199 PRFKDAKALVAELEPGDALYIPAGWWHHVRSLDDFNIAVNYWF 241
|
This cupin like domain shares similarity to the JmjC domain. Length = 247 |
| >gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| KOG2131 | 427 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2130 | 407 | consensus Phosphatidylserine-specific receptor Ptd | 100.0 | |
| PF13621 | 251 | Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU | 100.0 | |
| KOG2132 | 355 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG2508 | 437 | consensus Predicted phospholipase [Lipid transport | 99.91 | |
| PF02373 | 114 | JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 | 99.56 | |
| KOG1633 | 776 | consensus F-box protein JEMMA and related proteins | 99.5 | |
| PF08007 | 319 | Cupin_4: Cupin superfamily protein; InterPro: IPR0 | 99.44 | |
| COG2850 | 383 | Uncharacterized conserved protein [Function unknow | 99.2 | |
| KOG3706 | 629 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG1356 | 889 | consensus Putative transcription factor 5qNCA, con | 98.62 | |
| COG2140 | 209 | Thermophilic glucose-6-phosphate isomerase and rel | 96.82 | |
| smart00558 | 57 | JmjC A domain family that is part of the cupin met | 96.48 | |
| PF00190 | 144 | Cupin_1: Cupin; InterPro: IPR006045 This family re | 96.4 | |
| KOG2132 | 355 | consensus Uncharacterized conserved protein, conta | 96.09 | |
| TIGR03404 | 367 | bicupin_oxalic bicupin, oxalate decarboxylase fami | 95.91 | |
| PF06560 | 182 | GPI: Glucose-6-phosphate isomerase (GPI); InterPro | 95.21 | |
| PF07883 | 71 | Cupin_2: Cupin domain; InterPro: IPR013096 This fa | 93.96 | |
| KOG2131 | 427 | consensus Uncharacterized conserved protein, conta | 93.75 | |
| TIGR03037 | 159 | anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | 93.6 | |
| TIGR02272 | 335 | gentisate_1_2 gentisate 1,2-dioxygenase. This fami | 93.44 | |
| PRK04190 | 191 | glucose-6-phosphate isomerase; Provisional | 93.13 | |
| PRK13264 | 177 | 3-hydroxyanthranilate 3,4-dioxygenase; Provisional | 92.99 | |
| KOG0958 | 690 | consensus DNA damage-responsive repressor GIS1/RPH | 92.96 | |
| COG0662 | 127 | {ManC} Mannose-6-phosphate isomerase [Carbohydrate | 91.03 | |
| PF06052 | 151 | 3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte | 90.26 | |
| COG1917 | 131 | Uncharacterized conserved protein, contains double | 90.01 | |
| smart00835 | 146 | Cupin_1 Cupin. This family represents the conserve | 89.57 | |
| TIGR03404 | 367 | bicupin_oxalic bicupin, oxalate decarboxylase fami | 87.82 | |
| PF05995 | 175 | CDO_I: Cysteine dioxygenase type I; InterPro: IPR0 | 87.04 | |
| TIGR02466 | 201 | conserved hypothetical protein. This family consis | 86.88 | |
| PF05523 | 131 | FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 | 86.62 | |
| PF01050 | 151 | MannoseP_isomer: Mannose-6-phosphate isomerase; In | 85.0 | |
| COG4101 | 142 | Predicted mannose-6-phosphate isomerase [Carbohydr | 83.05 | |
| PF02041 | 167 | Auxin_BP: Auxin binding protein; InterPro: IPR0005 | 82.42 | |
| PF13759 | 101 | 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB | 80.73 | |
| PRK13290 | 125 | ectC L-ectoine synthase; Reviewed | 80.72 |
| >KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-66 Score=514.08 Aligned_cols=371 Identities=32% Similarity=0.536 Sum_probs=307.6
Q ss_pred CccccCCCceeeecCCCCCHHHHHHHHhCCCCcEEEEcCCCCcccc----ccCcccC-----------------------
Q 011537 1 MGIRIGGGQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRAC----KDWVTEN----------------------- 53 (483)
Q Consensus 1 ~~~~~~~~~IeRi~~~~lS~eeF~~~yl~~nkPVII~g~~~~WpA~----~~Wt~~~----------------------- 53 (483)
|+..+- +.|+|+.++.+++..|.++|..++.||+|.++.++|+|. ..|....
T Consensus 22 ~~~qlr-~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~ 100 (427)
T KOG2131|consen 22 MEPQLR-PCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKN 100 (427)
T ss_pred cchhhh-hhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCcc
Confidence 566677 889999999999999999999999999999999999998 5555422
Q ss_pred -------CCCchhHHHhhhCCceEEEEeCCcccccCcceeeecHHHHHHHHHhccccccccccccccCCCcceeeeeccc
Q 011537 54 -------GQPNLLFFSTHFGKSKVQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHF 126 (483)
Q Consensus 54 -------~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~~~~~~m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~ 126 (483)
+.+|.+||.+.||+..|+|+.|+..+.. .|+++++.-+.......+ ...+++|++|||+
T Consensus 101 v~~~~~s~f~~~~~Le~ny~d~~v~~a~~~e~e~~-----~l~lad~~~~e~~~~~~~---------~q~p~ly~kDwHL 166 (427)
T KOG2131|consen 101 VFLCDLSLFPDYEYLERNYGDFVVPVANCNEKERY-----SLKLADWEFREEQVQLAC---------PQAPSLYGKDWHL 166 (427)
T ss_pred ccccccccCccHHHHHhhhhhcchhhccccchhhh-----hhhhccchhHHHhHhhhc---------CCCccccccchhe
Confidence 3345666666666666666666543322 144444444443332221 2356899999999
Q ss_pred cccCCccccccCCccccchhHHHhhhhcccCCCCccccccCCccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEE
Q 011537 127 AKEYPEYVAYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKK 206 (483)
Q Consensus 127 ~~~~P~l~~y~~P~~f~dDwln~~~d~~~~~~~pd~~~~~~~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrK 206 (483)
....|....|.+|.+|++||+|+++... .++||||+||||+|||||+|.|+++++||+++|||+|
T Consensus 167 ~~~~d~~~~~~~pd~F~~dwlne~~i~~---------------~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~K 231 (427)
T KOG2131|consen 167 YRFLDNDFPYWTPDLFAKDWLNEFVIDG---------------ESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGRK 231 (427)
T ss_pred eeecCcccccccchhhhhcccchhhccC---------------CCCceeEEEeccCCCCCccchhhhcCCcceeeeecce
Confidence 9999988889999999999999987531 2489999999999999999999999999999999999
Q ss_pred EEEEeCCCCcccccCCCCCCccccccCC-CCcccCCCCCCceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCC
Q 011537 207 KWLFLSPSQCHLVFDRNLKGCVYNIFDD-VSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNG 285 (483)
Q Consensus 207 rW~LfPP~~~~~Ly~~~~~s~~~di~d~-~d~~~fP~~~~a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~ 285 (483)
+|.|+||+++..|+++. ++.++++... .|. + ..++++|+|+|||+||||+||+|||.||+|||||||||+|+
T Consensus 232 rWl~~pP~qe~~l~dr~-gnlp~~~~~~~ld~-----~-~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~ 304 (427)
T KOG2131|consen 232 RWLLYPPEQEQTLADRY-GNLPLPSWITKLDL-----F-RGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNA 304 (427)
T ss_pred eEEEeChHHhhhhhhhc-cCcCCccccccccc-----c-ccchhhhhccCCceeeccCccccccccccceeeeccccccc
Confidence 99999999999998874 3445543211 111 1 35679999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhccCCCHHHHHHHHHHHhhhhHHHHHhhccccccccCCCC
Q 011537 286 YNLSWVWDLLLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFSFLSRFSLVNVVILFHLRRDYENQIWSSS 365 (483)
Q Consensus 286 ~nl~~~~~~l~~~l~~~~~~~~d~~~~~~~f~~~cq~~~~~~~g~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 365 (483)
+||.+||.+|++++.++.++++| ++|++|+.+||.++++++|||+.+|+.|+.++| .|-+ .....+++
T Consensus 305 ~nl~~~w~~Lk~~y~a~~esisd--d~md~~~~~cq~~lra~~gin~~ef~~f~~~~a-----~l~h-----~~~~~~a~ 372 (427)
T KOG2131|consen 305 TNLAWMWDALKEDYPALAESISD--DLMDDFPLECQFSLRATEGINANEFIYFPDFWA-----MLKH-----ATLNRDAS 372 (427)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhh--hccccchhhhhhhhhhhccccccceEeehHHHH-----HHHH-----HHhccchh
Confidence 99999999999999999999999 889999999999999999999999999999998 2222 12235567
Q ss_pred ccccchhccHHHHHHHHHHhccccccccccchhhhhHHhcCChhHHHHHhhhhHHH
Q 011537 366 PVARHLALNLVSIQKIALKMKSVNDLAGSFGFFMYLKETLDDPEFLKLCMGFCRTY 421 (483)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (483)
++...+++|+..+-+||..|+....++.+ ..+.|..+.+||++++++.++.+++|
T Consensus 373 l~~s~~~~~~~~q~evl~~l~~~~~~t~~-~t~~dsp~~~ed~qqlr~a~d~~~~~ 427 (427)
T KOG2131|consen 373 LFISTFLSDWPIQPEVLPPLSWEYSITKN-ITLNDSPGSLEDSQQLRSARDTIFKS 427 (427)
T ss_pred hhHHhhhcccccchhhhcceeecCceecc-chhccCCccccccccchHHHHhhcCC
Confidence 88899999999999999999999999998 88999999999999999999887764
|
|
| >KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A | Back alignment and domain information |
|---|
| >KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] | Back alignment and domain information |
|---|
| >KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors | Back alignment and domain information |
|---|
| >COG2850 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3706 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] | Back alignment and domain information |
|---|
| >COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily | Back alignment and domain information |
|---|
| >PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family | Back alignment and domain information |
|---|
| >PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5 | Back alignment and domain information |
|---|
| >PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | Back alignment and domain information |
|---|
| >TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase | Back alignment and domain information |
|---|
| >PRK04190 glucose-6-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
| >PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional | Back alignment and domain information |
|---|
| >KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1 | Back alignment and domain information |
|---|
| >COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] | Back alignment and domain information |
|---|
| >smart00835 Cupin_1 Cupin | Back alignment and domain information |
|---|
| >TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family | Back alignment and domain information |
|---|
| >PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1 | Back alignment and domain information |
|---|
| >TIGR02466 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase [] | Back alignment and domain information |
|---|
| >PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5 | Back alignment and domain information |
|---|
| >COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
| >PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A | Back alignment and domain information |
|---|
| >PRK13290 ectC L-ectoine synthase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 483 | ||||
| 3ld8_A | 334 | Structure Of Jmjd6 And Fab Fragments Length = 334 | 1e-16 | ||
| 3k2o_A | 336 | Structure Of An Oxygenase Length = 336 | 3e-14 | ||
| 4aap_A | 239 | Crystal Structure Of Jmjd5 Domain Of Human Lysine-S | 3e-08 | ||
| 3uyj_A | 248 | Crystal Structure Of Jmjd5 Catalytic Core Domain In | 3e-08 | ||
| 4gjz_A | 235 | Jmjd5 In Complex With 2-Oxoglutarate Length = 235 | 4e-08 | ||
| 4gjy_A | 235 | Jmjd5 In Complex With N-Oxalylglycine Length = 235 | 3e-07 | ||
| 3al5_A | 338 | Crystal Structure Of Human Tyw5 Length = 338 | 9e-07 | ||
| 3kv9_A | 397 | Structure Of Kiaa1718 Jumonji Domain Length = 397 | 2e-04 | ||
| 3kv5_D | 488 | Structure Of Kiaa1718, Human Jumonji Demethylase, I | 3e-04 | ||
| 2yu1_A | 451 | Crystal Structure Of Hjhdm1a Complexed With A-ketog | 7e-04 |
| >pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments Length = 334 | Back alignment and structure |
|
| >pdb|3K2O|A Chain A, Structure Of An Oxygenase Length = 336 | Back alignment and structure |
| >pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine (Nog) Length = 239 | Back alignment and structure |
| >pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In Complex With Nickle And Alpha-Kg Length = 248 | Back alignment and structure |
| >pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate Length = 235 | Back alignment and structure |
| >pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine Length = 235 | Back alignment and structure |
| >pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5 Length = 338 | Back alignment and structure |
| >pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain Length = 397 | Back alignment and structure |
| >pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex With N-Oxalylglycine Length = 488 | Back alignment and structure |
| >pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With A-ketoglutarate Length = 451 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 | Back alignment and structure |
|---|
Score = 226 bits (576), Expect = 3e-70
Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 53/322 (16%)
Query: 8 GQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGK 67
+E+ + ++S EFVE+Y +PVVL + W A + W L +
Sbjct: 45 DNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKW-------TLERLKRKYRN 97
Query: 68 SKVQVADCGIREFTDQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFA 127
K + + D V+M + +++ D S LY+ D +
Sbjct: 98 QKFKCGED-----NDGYSVKMKMKYYIEYMESTR-------------DDSPLYIFDSSYG 139
Query: 128 ---KEYPEYVAYRTPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGS 184
K Y+ P F DD + R YR+ MG S
Sbjct: 140 EHPKRRKLLEDYKVPKFFTDDLFQYAGEKRR----------------PPYRWFVMGPPRS 183
Query: 185 WTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNIFDDVSETD----- 239
T +H D + +W+A V G K+W S + + ++ +
Sbjct: 184 GTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPR 243
Query: 240 ---FPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLL 296
+ LE Q+ E +FVP GW+H V NL+ TI+I N+ + N VW +
Sbjct: 244 TQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTV 303
Query: 297 RDY-NEAKEYIEDIRDICDDFE 317
R ++++ ++ +
Sbjct: 304 RGRPKLSRKWYRILKQEHPELA 325
|
| >3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248 | Back alignment and structure |
|---|
| >3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338 | Back alignment and structure |
|---|
| >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349 | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 | Back alignment and structure |
|---|
| >2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451 | Back alignment and structure |
|---|
| >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 | Back alignment and structure |
|---|
| >3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
| >2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 | Back alignment and structure |
|---|
| >3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 | Back alignment and structure |
|---|
| >4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 | Back alignment and structure |
|---|
| >4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489 | Back alignment and structure |
|---|
| >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342 | Back alignment and structure |
|---|
| >2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Length = 442 | Back alignment and structure |
|---|
| >3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| 3k2o_A | 336 | Bifunctional arginine demethylase and lysyl-hydro | 100.0 | |
| 4gjz_A | 235 | Lysine-specific demethylase 8; JMJC, beta barrel, | 100.0 | |
| 3kv9_A | 397 | JMJC domain-containing histone demethylation prote | 100.0 | |
| 3k3o_A | 371 | PHF8, PHD finger protein 8; histone demethylase, c | 100.0 | |
| 2yu1_A | 451 | JMJC domain-containing histone demethylation PROT; | 100.0 | |
| 3al5_A | 338 | HTYW5, JMJC domain-containing protein C2ORF60; tRN | 100.0 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 100.0 | |
| 3pua_A | 392 | GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe | 100.0 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 100.0 | |
| 3d8c_A | 349 | Hypoxia-inducible factor 1 alpha inhibitor; FIH, H | 100.0 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 99.97 | |
| 1vrb_A | 342 | Putative asparaginyl hydroxylase; 2636534, structu | 99.92 | |
| 2xdv_A | 442 | MYC-induced nuclear antigen; ribosome biogenesis, | 99.79 | |
| 4diq_A | 489 | Lysine-specific demethylase NO66; structural genom | 99.71 | |
| 2ypd_A | 392 | Probable JMJC domain-containing histone demethyla | 99.68 | |
| 3avr_A | 531 | Lysine-specific demethylase 6A; cupin superfamily, | 98.84 | |
| 2xxz_A | 332 | Lysine-specific demethylase 6B; oxidoreductase, hi | 98.5 | |
| 4ask_A | 510 | Lysine-specific demethylase 6B; oxidoreductase, KD | 98.41 | |
| 3dxt_A | 354 | JMJC domain-containing histone demethylation PROT; | 98.29 | |
| 2ox0_A | 381 | JMJC domain-containing histone demethylation PROT; | 97.83 | |
| 3opt_A | 373 | DNA damage-responsive transcriptional repressor R; | 97.81 | |
| 3eqe_A | 171 | Putative cystein deoxygenase; YUBC, SR112, NESG, s | 95.23 | |
| 3lag_A | 98 | Uncharacterized protein RPA4178; functionally unkn | 94.83 | |
| 1fxz_A | 476 | Glycinin G1; proglycinin, legumin, SEED storage pr | 94.34 | |
| 2e9q_A | 459 | 11S globulin subunit beta; cucubitin, pumpkin SEED | 94.29 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 94.2 | |
| 1dgw_A | 178 | Canavalin; duplicated swiss-roll beta barrels, loo | 93.99 | |
| 3c3v_A | 510 | Arachin ARAH3 isoform; peanut allergen, allergy, g | 93.96 | |
| 3fz3_A | 531 | Prunin; TREE NUT allergen, allergy, amandin, almon | 93.85 | |
| 3ksc_A | 496 | LEGA class, prolegumin; PEA prolegumin, 11S SEED s | 93.71 | |
| 2vqa_A | 361 | SLL1358 protein, MNCA; periplasmic binding protein | 93.54 | |
| 3nw4_A | 368 | Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc | 93.3 | |
| 1fi2_A | 201 | Oxalate oxidase, germin; beta-jellyroll, oxidoredu | 93.14 | |
| 3eln_A | 200 | Cysteine dioxygenase type 1; peroxysulfenate, non- | 93.02 | |
| 2d40_A | 354 | Z3393, putative gentisate 1,2-dioxygenase; gentisi | 92.58 | |
| 3uss_A | 211 | Putative uncharacterized protein; cupin, three his | 92.38 | |
| 3kgl_A | 466 | Cruciferin; 11S SEED globulin, rapeseed, SEED stor | 92.28 | |
| 2vqa_A | 361 | SLL1358 protein, MNCA; periplasmic binding protein | 92.1 | |
| 2d5f_A | 493 | Glycinin A3B4 subunit; soybean, globulin, 11S,SEED | 91.92 | |
| 3bu7_A | 394 | Gentisate 1,2-dioxygenase; cupin domain, oxidoredu | 91.71 | |
| 1x82_A | 190 | Glucose-6-phosphate isomerase; cupin superfamily, | 91.69 | |
| 3fjs_A | 114 | Uncharacterized protein with RMLC-like cupin fold; | 91.29 | |
| 3qac_A | 465 | 11S globulin SEED storage protein; 11S SEED storag | 91.28 | |
| 4e2g_A | 126 | Cupin 2 conserved barrel domain protein; MCSG, PSI | 91.22 | |
| 2phl_A | 397 | Phaseolin; plant SEED storage protein(vicilin); HE | 91.07 | |
| 1yhf_A | 115 | Hypothetical protein SPY1581; structural genomics, | 91.03 | |
| 1uij_A | 416 | Beta subunit of beta conglycinin; double-stranded | 90.96 | |
| 3ibm_A | 167 | Cupin 2, conserved barrel domain protein; cupin 2 | 90.9 | |
| 3nw4_A | 368 | Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc | 90.9 | |
| 2ea7_A | 434 | 7S globulin-1; beta barrel, cupin superfamily, pla | 90.89 | |
| 3ejk_A | 174 | DTDP sugar isomerase; YP_390184.1, structural geno | 90.85 | |
| 1uij_A | 416 | Beta subunit of beta conglycinin; double-stranded | 90.78 | |
| 2gm6_A | 208 | Cysteine dioxygenase type I; structural genomics, | 90.7 | |
| 3bu7_A | 394 | Gentisate 1,2-dioxygenase; cupin domain, oxidoredu | 90.69 | |
| 2o8q_A | 134 | Hypothetical protein; cpuin-like fold, structural | 90.27 | |
| 1lr5_A | 163 | Auxin binding protein 1; beta jellyroll, double st | 90.15 | |
| 3kgz_A | 156 | Cupin 2 conserved barrel domain protein; metallopr | 90.15 | |
| 2ozj_A | 114 | Cupin 2, conserved barrel; cupin superfamily prote | 90.04 | |
| 2ea7_A | 434 | 7S globulin-1; beta barrel, cupin superfamily, pla | 89.89 | |
| 1yfu_A | 174 | 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid | 89.82 | |
| 1v70_A | 105 | Probable antibiotics synthesis protein; structural | 89.67 | |
| 1o5u_A | 101 | Novel thermotoga maritima enzyme TM1112; cupin, st | 89.65 | |
| 1j58_A | 385 | YVRK protein; cupin, decarboxyklase, oxalate, mang | 89.51 | |
| 1zvf_A | 176 | 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b | 89.27 | |
| 2cav_A | 445 | Protein (canavalin); vicilin, 7S SEED protein, dom | 89.26 | |
| 2fqp_A | 97 | Hypothetical protein BP2299; double-stranded beta- | 89.22 | |
| 2oa2_A | 148 | BH2720 protein; 10175341, structural genomics, joi | 89.2 | |
| 3h8u_A | 125 | Uncharacterized conserved protein with double-STR | 89.14 | |
| 2pfw_A | 116 | Cupin 2, conserved barrel domain protein; cupin do | 88.89 | |
| 3d82_A | 102 | Cupin 2, conserved barrel domain protein; structur | 88.88 | |
| 2y0o_A | 175 | Probable D-lyxose ketol-isomerase; carbohydrate me | 88.78 | |
| 4axo_A | 151 | EUTQ, ethanolamine utilization protein; structural | 88.16 | |
| 1j58_A | 385 | YVRK protein; cupin, decarboxyklase, oxalate, mang | 88.07 | |
| 3jzv_A | 166 | Uncharacterized protein RRU_A2000; structural geno | 87.99 | |
| 4i4a_A | 128 | Similar to unknown protein; structural genomics, P | 87.95 | |
| 3bb6_A | 127 | Uncharacterized protein YEAR; structural genomics, | 87.92 | |
| 3l2h_A | 162 | Putative sugar phosphate isomerase; AFE_0303, stru | 87.67 | |
| 2gu9_A | 113 | Tetracenomycin polyketide synthesis protein; X-RAY | 87.64 | |
| 1y3t_A | 337 | Hypothetical protein YXAG; BI cupin, dioxygenase, | 87.11 | |
| 2xlg_A | 239 | SLL1785 protein, CUCA; metal binding protein, cupi | 87.05 | |
| 2q30_A | 110 | Uncharacterized protein; double-stranded beta-heli | 86.98 | |
| 2cav_A | 445 | Protein (canavalin); vicilin, 7S SEED protein, dom | 86.56 | |
| 2opk_A | 112 | Hypothetical protein; putative mannose-6-phosphate | 86.16 | |
| 2d40_A | 354 | Z3393, putative gentisate 1,2-dioxygenase; gentisi | 86.03 | |
| 1y3t_A | 337 | Hypothetical protein YXAG; BI cupin, dioxygenase, | 86.03 | |
| 2bnm_A | 198 | Epoxidase; oxidoreductase, cupin, HTH, cation-depe | 85.92 | |
| 2b8m_A | 117 | Hypothetical protein MJ0764; structural genomics, | 85.83 | |
| 1nxm_A | 197 | DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell | 85.37 | |
| 3i7d_A | 163 | Sugar phosphate isomerase; YP_168127.1, structural | 85.32 | |
| 1ep0_A | 185 | DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race | 85.29 | |
| 2ixk_A | 184 | DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l | 84.95 | |
| 1juh_A | 350 | Quercetin 2,3-dioxygenase; cupin, glycoprotein, be | 84.91 | |
| 3ht1_A | 145 | REMF protein; cupin fold, Zn-binding, antibiotic b | 84.78 | |
| 2qnk_A | 286 | 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol | 84.77 | |
| 2i45_A | 107 | Hypothetical protein; neisseria meningitidis cupin | 84.71 | |
| 3lwc_A | 119 | Uncharacterized protein; structural genomics, unkn | 84.11 | |
| 3cew_A | 125 | Uncharacterized cupin protein; all beta-protein, j | 83.2 | |
| 1dzr_A | 183 | DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, | 82.89 | |
| 3bcw_A | 123 | Uncharacterized protein; structural genomics, join | 82.64 | |
| 2ozi_A | 98 | Hypothetical protein RPA4178; APC6210, putative pr | 82.55 | |
| 1upi_A | 225 | DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat | 81.75 | |
| 3rns_A | 227 | Cupin 2 conserved barrel domain protein; structura | 81.42 | |
| 2pyt_A | 133 | Ethanolamine utilization protein EUTQ; structural | 81.3 | |
| 1o4t_A | 133 | Putative oxalate decarboxylase; double-stranded be | 81.21 | |
| 1oi6_A | 205 | PCZA361.16; epimerase, vancomycin group antibiotic | 80.97 | |
| 1wlt_A | 196 | 176AA long hypothetical DTDP-4-dehydrorhamnose 3, | 80.9 | |
| 1fxz_A | 476 | Glycinin G1; proglycinin, legumin, SEED storage pr | 80.81 | |
| 3qac_A | 465 | 11S globulin SEED storage protein; 11S SEED storag | 80.74 | |
| 3h7j_A | 243 | Bacilysin biosynthesis protein BACB; YWFC, bacilys | 80.32 |
| >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=410.06 Aligned_cols=268 Identities=26% Similarity=0.445 Sum_probs=217.2
Q ss_pred CCceeeecCCCCCHHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCcccccCccee
Q 011537 7 GGQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREFTDQKRV 86 (483)
Q Consensus 7 ~~~IeRi~~~~lS~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~~~f~~~~~~ 86 (483)
.++|+|++++.+|+++|.++|+.+++||||+|++++|||+++|+ ++||+++||+..|+|.... ++...
T Consensus 44 ~~~I~Ri~~~~lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt-------~~yL~~~~G~~~V~v~~~~-----~~~~~ 111 (336)
T 3k2o_A 44 ADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWT-------LERLKRKYRNQKFKCGEDN-----DGYSV 111 (336)
T ss_dssp CCCCCEEEGGGCCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCS-------HHHHHHHSTTCEEEEEECT-----TSCEE
T ss_pred CCCCCEecCCCCCHHHHHHHhhccCCCEEEeCCcCCChhHhhhh-------HHHHHHHhCCceEEEEecC-----CCcee
Confidence 47899998778999999999999999999999999999999998 5999999999999997542 23468
Q ss_pred eecHHHHHHHHHhccccccccccccccCCCcceeeeeccccc--cCCccc-cccCCccccchhHHHhhhhcccCCCCccc
Q 011537 87 EMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAK--EYPEYV-AYRTPLIFCDDWLNMYLDHFRLHKDPESY 163 (483)
Q Consensus 87 ~m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~~~--~~P~l~-~y~~P~~f~dDwln~~~d~~~~~~~pd~~ 163 (483)
.|+|++|++++.+. .++.++||+++++.. ++|+|. +|.+|.+|.+|+++....
T Consensus 112 ~m~~~~fl~~~~~~-------------~~~~~lYL~d~~~~e~~~~p~L~~dy~~P~~f~~d~~~~~~~----------- 167 (336)
T 3k2o_A 112 KMKMKYYIEYMEST-------------RDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGE----------- 167 (336)
T ss_dssp EEEHHHHHHHHHHC-------------CCSSCCCEEESCGGGSTTGGGGGGGCCCCGGGCCCGGGGGCT-----------
T ss_pred eecHHHHHHHHHhc-------------CCCCCceEecccccccccchhHHHhcCCCcccccchhhhccc-----------
Confidence 99999999999863 245689999998864 468876 799999999998863211
Q ss_pred cccCCccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCC--CccccccCCCCcccCC
Q 011537 164 QKDNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLK--GCVYNIFDDVSETDFP 241 (483)
Q Consensus 164 ~~~~~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~--s~~~di~d~~d~~~fP 241 (483)
..+++++|+|||++||+|++|+|+++|.+|++||.|+|+|+||||.+...||..... +...+..-+.....||
T Consensus 168 -----~~~p~~~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P 242 (336)
T 3k2o_A 168 -----KRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYP 242 (336)
T ss_dssp -----TTSCCCEEEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGG
T ss_pred -----ccCCCceEEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCc
Confidence 124788999999999999999999999999999999999999999998888764311 0000000000123455
Q ss_pred CCC------CceeEEEEEeCCcEEEeCCCCeEEEEeCCCcEEEeeecCCCCChHHHHHHHH--------HHHHHHHHHHH
Q 011537 242 GFK------KTLWLECTQEQNEIIFVPSGWYHQVHNLEDTISINHNWFNGYNLSWVWDLLL--------RDYNEAKEYIE 307 (483)
Q Consensus 242 ~~~------~a~~~e~vq~pGDiLFVPsGWwHqV~nledsISIn~Nf~~~~nl~~~~~~l~--------~~l~~~~~~~~ 307 (483)
.++ .+++++|+|+|||+||||+||||+|.|+++|||||+||+++.|++.+|..++ +.++++++.+.
T Consensus 243 ~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~~~p~~~~~~~~~~~~~~p 322 (336)
T 3k2o_A 243 RTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILKQEHP 322 (336)
T ss_dssp GGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHCH
T ss_pred chhhhcccccCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHhhChHHHHHHHHHHHHhCc
Confidence 543 4688999999999999999999999999999999999999999999999874 34566666666
Q ss_pred HHHHhhhh
Q 011537 308 DIRDICDD 315 (483)
Q Consensus 308 d~~~~~~~ 315 (483)
|+.+++++
T Consensus 323 ~~~~~~~~ 330 (336)
T 3k2o_A 323 ELAVLADS 330 (336)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHhh
Confidence 66666553
|
| >4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* | Back alignment and structure |
|---|
| >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* | Back alignment and structure |
|---|
| >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* | Back alignment and structure |
|---|
| >2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A | Back alignment and structure |
|---|
| >3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 | Back alignment and structure |
|---|
| >2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} | Back alignment and structure |
|---|
| >4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* | Back alignment and structure |
|---|
| >2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* | Back alignment and structure |
|---|
| >3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* | Back alignment and structure |
|---|
| >2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* | Back alignment and structure |
|---|
| >3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A | Back alignment and structure |
|---|
| >2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A | Back alignment and structure |
|---|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
| >1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A | Back alignment and structure |
|---|
| >3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} | Back alignment and structure |
|---|
| >3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A | Back alignment and structure |
|---|
| >3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} | Back alignment and structure |
|---|
| >2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} | Back alignment and structure |
|---|
| >3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A | Back alignment and structure |
|---|
| >1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A | Back alignment and structure |
|---|
| >3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A | Back alignment and structure |
|---|
| >2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 | Back alignment and structure |
|---|
| >3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} | Back alignment and structure |
|---|
| >2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} | Back alignment and structure |
|---|
| >3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* | Back alignment and structure |
|---|
| >3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
| >3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} | Back alignment and structure |
|---|
| >4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
| >2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* | Back alignment and structure |
|---|
| >1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 | Back alignment and structure |
|---|
| >1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* | Back alignment and structure |
|---|
| >3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} | Back alignment and structure |
|---|
| >3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A | Back alignment and structure |
|---|
| >2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A | Back alignment and structure |
|---|
| >3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
| >1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* | Back alignment and structure |
|---|
| >2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 | Back alignment and structure |
|---|
| >3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* | Back alignment and structure |
|---|
| >3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A | Back alignment and structure |
|---|
| >1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* | Back alignment and structure |
|---|
| >1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A | Back alignment and structure |
|---|
| >1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A | Back alignment and structure |
|---|
| >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A | Back alignment and structure |
|---|
| >1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20 | Back alignment and structure |
|---|
| >2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B | Back alignment and structure |
|---|
| >2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} | Back alignment and structure |
|---|
| >2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} | Back alignment and structure |
|---|
| >3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} | Back alignment and structure |
|---|
| >2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
| >4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} | Back alignment and structure |
|---|
| >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A | Back alignment and structure |
|---|
| >3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
| >4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} | Back alignment and structure |
|---|
| >3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13 | Back alignment and structure |
|---|
| >3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} | Back alignment and structure |
|---|
| >2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A | Back alignment and structure |
|---|
| >1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* | Back alignment and structure |
|---|
| >2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A | Back alignment and structure |
|---|
| >2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
| >2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B | Back alignment and structure |
|---|
| >2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} | Back alignment and structure |
|---|
| >2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* | Back alignment and structure |
|---|
| >2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A | Back alignment and structure |
|---|
| >2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 | Back alignment and structure |
|---|
| >1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* | Back alignment and structure |
|---|
| >3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
| >1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A* | Back alignment and structure |
|---|
| >2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A* | Back alignment and structure |
|---|
| >1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* | Back alignment and structure |
|---|
| >3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A | Back alignment and structure |
|---|
| >2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A | Back alignment and structure |
|---|
| >2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} | Back alignment and structure |
|---|
| >3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A* | Back alignment and structure |
|---|
| >3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} | Back alignment and structure |
|---|
| >1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A* | Back alignment and structure |
|---|
| >3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} | Back alignment and structure |
|---|
| >2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 | Back alignment and structure |
|---|
| >1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 | Back alignment and structure |
|---|
| >1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A | Back alignment and structure |
|---|
| >1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A | Back alignment and structure |
|---|
| >1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A | Back alignment and structure |
|---|
| >3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} | Back alignment and structure |
|---|
| >3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 483 | ||||
| d1h2ka_ | 335 | b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit | 1e-31 | |
| d1vrba1 | 319 | b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla | 3e-21 |
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Hypoxia-inducible factor HIF ihhibitor (FIH1) domain: Hypoxia-inducible factor HIF ihhibitor (FIH1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 1e-31
Identities = 52/311 (16%), Positives = 101/311 (32%), Gaps = 35/311 (11%)
Query: 21 SEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIREF 80
E+ + +PVVLT + A K W +L + + G V +F
Sbjct: 35 DPRAEELIENEEPVVLTDTNLVYPALK-W-------DLEYLQENIGNGDFSVYSASTHKF 86
Query: 81 TDQKRVEMSVSEFVK---NWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYVAYR 137
+M+ + K N E E + L +
Sbjct: 87 LYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVM 146
Query: 138 TPLIFCDDWLNMYLDHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSYS 197
L F +W+N + + +G +G+ TP H D ++
Sbjct: 147 DFLGFNWNWINKQQGKRGWGQLT-------------SNLLLIGMEGNVTPAHYDEQQN-- 191
Query: 198 WSANVCGKKKWLFLSPSQCHLVFDRNLKGCVYNI----FDDVSETDFPGFKKTLWLECTQ 253
+ A + G K+ + P Q ++ + FD+ FP F+ + E
Sbjct: 192 FFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV 251
Query: 254 EQNEIIFVPSGWYHQVHNLED---TISINHNWFNGYNLSWVWDLLLRDYNEAKEYIEDIR 310
+++++P W+H + +L + TI++N + + L A + +I
Sbjct: 252 GPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVA--IMRNIE 309
Query: 311 DICDDFEGLCQ 321
+ + G Q
Sbjct: 310 KMLGEALGNPQ 320
|
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 483 | |||
| d1h2ka_ | 335 | Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum | 100.0 | |
| d1vrba1 | 319 | Putative asparaginyl hydroxylase YxbC {Bacillus su | 99.97 | |
| d1lr5a_ | 160 | Auxin binding protein {Maize (Zea mays) [TaxId: 45 | 96.88 | |
| d1x82a_ | 190 | Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc | 96.5 | |
| d1fxza2 | 174 | Seed storage 7S protein {Soybean (Glycine max), pr | 96.36 | |
| g1dgw.1 | 168 | Seed storage 7S protein {Jack bean (Canavalia ensi | 96.08 | |
| d2phla2 | 162 | Seed storage 7S protein {French bean (Phaseolus vu | 95.87 | |
| d1od5a2 | 173 | Seed storage 7S protein {Soybean (Glycine max), gl | 95.58 | |
| d1uika2 | 185 | Seed storage 7S protein {Soybean (Glycine max), be | 95.47 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 95.32 | |
| d2b8ma1 | 108 | Hypothetical protein MJ0764 {Archaeon Methanococcu | 95.05 | |
| d1uija1 | 170 | Seed storage 7S protein {Soybean (Glycine max), be | 94.95 | |
| d2et1a1 | 201 | Germin {Barley (Hordeum vulgare) [TaxId: 4513]} | 94.61 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 94.51 | |
| d3elna1 | 186 | Cysteine dioxygenase type I {Rattus norvegicus [Ta | 94.13 | |
| d1uika1 | 203 | Seed storage 7S protein {Soybean (Glycine max), be | 94.11 | |
| d1zvfa1 | 175 | 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea | 94.08 | |
| d1dgwa_ | 178 | Seed storage 7S protein {Jack bean (Canavalia ensi | 94.06 | |
| d2phda1 | 351 | Gentisate 1,2-dioxygenase {Pseudaminobacter salicy | 94.01 | |
| d2d40a1 | 308 | Gentisate 1,2-dioxygenase {Escherichia coli [TaxId | 93.41 | |
| d2f4pa1 | 134 | Hypothetical protein TM1010 {Thermotoga maritima [ | 93.21 | |
| d2d40a1 | 308 | Gentisate 1,2-dioxygenase {Escherichia coli [TaxId | 93.15 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 92.78 | |
| d1wlta1 | 176 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo | 92.69 | |
| d1o4ta_ | 115 | Hypothetical protein TM1287 {Thermotoga maritima [ | 92.5 | |
| d1juha_ | 348 | Quercetin 2,3-dioxygenase {Aspergillus japonicus [ | 92.35 | |
| d2pa7a1 | 135 | dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane | 92.21 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 92.01 | |
| d1v70a_ | 105 | Hypothetical protein TTHA0104 {Thermus thermophilu | 91.84 | |
| d1y3ta1 | 330 | Hypothetical protein YxaG {Bacillus subtilis [TaxI | 91.72 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 90.53 | |
| d2ixca1 | 198 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac | 90.25 | |
| d2pyta1 | 128 | Ethanolamine utilization protein EutQ {Salmonella | 90.0 | |
| d1yfua1 | 174 | 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m | 89.79 | |
| d2phda1 | 351 | Gentisate 1,2-dioxygenase {Pseudaminobacter salicy | 89.78 | |
| d1dzra_ | 183 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone | 89.78 | |
| d1y3ta1 | 330 | Hypothetical protein YxaG {Bacillus subtilis [TaxI | 89.25 | |
| d1vj2a_ | 114 | Hypothetical protein TM1459 {Thermotoga maritima [ | 88.7 | |
| d1nxma_ | 194 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto | 88.47 | |
| d2bnma2 | 122 | Hydroxypropylphosphonic acid epoxidase Fom4, C-ter | 87.88 | |
| d2c0za1 | 190 | Novobiocin biosynthesis protein NovW {Streptomyces | 86.86 | |
| d1oi6a_ | 202 | dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc | 85.96 | |
| d3bb6a1 | 109 | Uncharacterized protein YeaR {Escherichia coli [Ta | 85.9 | |
| d1ep0a_ | 183 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo | 84.42 | |
| d1y9qa2 | 99 | Probable transcriptional regulator VC1968, C-termi | 83.97 | |
| d2ixha1 | 184 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom | 83.73 | |
| d2phla1 | 200 | Seed storage 7S protein {French bean (Phaseolus vu | 83.67 | |
| d1juha_ | 348 | Quercetin 2,3-dioxygenase {Aspergillus japonicus [ | 83.58 | |
| d2gm6a1 | 192 | Cysteine dioxygenase type I {Ralstonia eutropha [T | 81.5 | |
| d1fxza1 | 239 | Seed storage 7S protein {Soybean (Glycine max), pr | 80.74 |
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Hypoxia-inducible factor HIF ihhibitor (FIH1) domain: Hypoxia-inducible factor HIF ihhibitor (FIH1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-38 Score=320.20 Aligned_cols=238 Identities=21% Similarity=0.364 Sum_probs=175.4
Q ss_pred CceeeecCCCCCHHHHHHHHhCCCCcEEEEcCCCCccccccCcccCCCCchhHHHhhhCCceEEEEeCCccc--------
Q 011537 8 GQIEKLNGKEVSYSEFVEKYMAKNQPVVLTGLMDDWRACKDWVTENGQPNLLFFSTHFGKSKVQVADCGIRE-------- 79 (483)
Q Consensus 8 ~~IeRi~~~~lS~eeF~~~yl~~nkPVII~g~~~~WpA~~~Wt~~~~~~n~dyL~~~~Gd~~V~V~d~~~~~-------- 79 (483)
.+|+|++..++ +.++|+.+++||||+|++.+|||+ +|+ ++||++++|+..|+|..+....
T Consensus 26 ~~vpr~~~~~~----~~e~y~~~~~PvVi~g~~~~Wpa~-kWt-------~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~ 93 (335)
T d1h2ka_ 26 RPIPRLSQSDP----RAEELIENEEPVVLTDTNLVYPAL-KWD-------LEYLQENIGNGDFSVYSASTHKFLYYDEKK 93 (335)
T ss_dssp EECCEECTTCH----HHHHHHHTTCCEEESCCCTTGGGG-GCC-------HHHHHHHSCSCCEEEEEESSSBCCCCCGGG
T ss_pred cccCccCCCCc----CHHHHhcCCCCEEEeCCCCCCCcc-cCC-------HHHHHHhhCCceEEEEEecCcccccccccc
Confidence 47999986432 567899999999999999999998 698 5999999999999997654321
Q ss_pred ------cc-CcceeeecHHHHHHHHHhccccccccccccccCCCcceeeeeccccccCCccc-cccCCccccchhHHHhh
Q 011537 80 ------FT-DQKRVEMSVSEFVKNWLENSIMENSNASTNEANDKSVLYLKDWHFAKEYPEYV-AYRTPLIFCDDWLNMYL 151 (483)
Q Consensus 80 ------f~-~~~~~~m~l~efl~~~~~~~~~~~~~as~~~~~~~~~lYL~d~~~~~~~P~l~-~y~~P~~f~dDwln~~~ 151 (483)
|. ......|++++|++++...... .....+|+.+.......+++. ++..|.++ +.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~----------~~~~~~yl~~~~~~~~~~~~~~d~~~~~~~---~~~~~~ 160 (335)
T d1h2ka_ 94 MANFQNFKPRSNREEMKFHEFVEKLQDIQQR----------GGEERLYLQQTLNDTVGRKIVMDFLGFNWN---WINKQQ 160 (335)
T ss_dssp GGGGTTCCCSEEEEEECHHHHHHHHHHHHHT----------TCCCEEEEEEECCTTSCHHHHHHHHTSCHH---HHHHHH
T ss_pred cccccccccccchhcccHHHHHHHHHhcccc----------CCCcceEhhhccccccChhhhcccccCccc---ccchhh
Confidence 11 1245789999999998764321 245678888765443333332 34444432 222221
Q ss_pred hhcccCCCCccccccCCccCCCccEEEecCCCCCCCcccccCCCccceeEEEeEEEEEEeCCCCcccccCCCCC-----C
Q 011537 152 DHFRLHKDPESYQKDNDICCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKKWLFLSPSQCHLVFDRNLK-----G 226 (483)
Q Consensus 152 d~~~~~~~pd~~~~~~~i~~~dyr~l~iGp~gs~T~lH~D~~~~~sW~~qV~GrKrW~LfPP~~~~~Ly~~~~~-----s 226 (483)
.... ......+++|||++||.|++|+|+++++ ++||.|+|+|+|+||.+...+|+.... .
T Consensus 161 ~~~~-------------~~~~~~~~lwiG~~gs~t~~H~D~~~~~--~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~ 225 (335)
T d1h2ka_ 161 GKRG-------------WGQLTSNLLLIGMEGNVTPAHYDEQQNF--FAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQ 225 (335)
T ss_dssp HHHT-------------CCCEEECEEEEECTTCEEEEECCSEEEE--EEEEESCEEEEEECGGGHHHHCBCCTTSTTTTB
T ss_pred cccc-------------ccCCcceEEEEcCCCCCCccccccccce--EEEeccceEEEEeccccccccccccccCCCCcc
Confidence 1100 0012335799999999999999998765 999999999999999999888764421 1
Q ss_pred ccccccCCCCcccCCCCCCceeEEEEEeCCcEEEeCCCCeEEEEeCCC---cEEEeeecCCCC
Q 011537 227 CVYNIFDDVSETDFPGFKKTLWLECTQEQNEIIFVPSGWYHQVHNLED---TISINHNWFNGY 286 (483)
Q Consensus 227 ~~~di~d~~d~~~fP~~~~a~~~e~vq~pGDiLFVPsGWwHqV~nled---sISIn~Nf~~~~ 286 (483)
+.+| .+.+|.+++|.++++++++|+|+|||+||||+||||+|+|+++ |||||++|.+..
T Consensus 226 s~~d-~~~~d~~~~p~~~~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~w~~~~~ 287 (335)
T d1h2ka_ 226 SQVD-FDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAP 287 (335)
T ss_dssp BCCC-TTSCCTTTCGGGGGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEECCC
T ss_pred eecc-ccCcchhhccchhcCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEeeecCCC
Confidence 2333 3567889999999999999999999999999999999999976 777777775543
|
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} | Back information, alignment and structure |
|---|
| >d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} | Back information, alignment and structure |
|---|
| >d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
| >d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} | Back information, alignment and structure |
|---|
| >d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]} | Back information, alignment and structure |
|---|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
| >d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
| >d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]} | Back information, alignment and structure |
|---|
| >d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} | Back information, alignment and structure |
|---|
| >d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]} | Back information, alignment and structure |
|---|
| >d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} | Back information, alignment and structure |
|---|
| >d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]} | Back information, alignment and structure |
|---|
| >d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
| >d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} | Back information, alignment and structure |
|---|
| >d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} | Back information, alignment and structure |
|---|