Citrus Sinensis ID: 011541

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---

MPYVEEEKANETPIPVRNPSPNLSSKKKRAPSWSDIWPLKRVVFTMQLPESLPDGDKTLISNFSRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGTGMGKRGGKFFKKM

cccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHccccccEEEcccccccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHccccccEEEcccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEcccccccHHHHHHHHccccccEEEEcccccccccccHHHHHcccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccccEEEEccccccccHHHHHHHHcccccccccccc

cccccHHHHHccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHcccccEHccccHHHHHHHHcccHHHHHccccccccccHHHHHHHHHccccccEccccccccHHHHHHHHHHcccccEEEEccccHHHHHHHHHHcccccEEEccccccccHHHHHHHcccccccHHHHccccccccccHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHcccccEEccHccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHcccccEEEcccccHccHHHHHHHHHHcccccEEEEcccHcccHHHHHHHHHcccccEEEEEEcccccccccHcHHccccccccccEEccc

mpyveeekanetpipvrnpspnlsskkkrapswsdiwplkRVVFTmqlpeslpdgdktlisnfsridrtllLSDDILLRILSklpvsqrnaNSLVCKRWLNLQGRLVRSLKVLDWeflesgrlisrfpnlsnvdLVVGCFVRRmgagvfwsHRLVSLHIDscfsrfcddegmllpVEIIDRGLKALacgcpnlrrLVVVGASEFGLLSVAEECLTLQefelhkcgdnvLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELsgcegsfdgIKAIGQCCQMleeltfsdhrmddGWLAALSYCENLKTLRFVsckkidpspgpdeylgsCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDcwgldddiFRFADVFRRAKFlslegcslvttEGLESVILSWTDLQSLRVVScknikdgevspALSTLFSVLKElkwrpdtksLLASSlagtgmgkrggkffkkm

mpyveeekanetpipvrnpspnlsskkkrapswsdiwplKRVVFTMQLpeslpdgdktlisNFSRIDRTLLLSDDILLRILsklpvsqrnanslvCKRWLNLQGRLVRSLKVLDWEFLESgrlisrfpnlsnVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKnikdgevspaLSTLFSVLKelkwrpdtksllasslagtgmgkrggkffkkm

MPYVEEEKANETPIPVRNPSPNLSSKKKRAPSWSDIWPLKRVVFTMQLPESLPDGDKTLISNFsridrtlllsddillrilsKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGTgmgkrggkffkkm

********************************WSDIWPLKRVVFTMQLPESLPDGDKTLISNFSRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPD*************************

*P******************************************************************TLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGTGMGKRGGKFFKKM

************PIPVRNP************SWSDIWPLKRVVFTMQLPESLPDGDKTLISNFSRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGTGMGKRGGKFFKKM

****EEEKANETPIPVRNPSPNL**********************************TLISNFSRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGTGMGKRGGKFFK**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		483	2.2.26 [Sep-21-2011]
Q8VYT5		476	F-box protein At5g07670 O	yes	no	0.952	0.966	0.625	1e-157
Q9FGN3		479	F-box protein At5g51380 O	no	no	0.956	0.964	0.608	1e-155
Q9FGN4		446	F-box protein At5g51370 O	no	no	0.836	0.905	0.623	1e-138
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.689	0.545	0.264	1e-17
Q5BJ29		491	F-box/LRR-repeat protein	yes	no	0.697	0.686	0.264	2e-12
Q9UJT9		491	F-box/LRR-repeat protein	yes	no	0.697	0.686	0.261	3e-12
A1A5X2		489	F-box/LRR-repeat protein	no	no	0.643	0.635	0.253	8e-12
Q5R3Z8		423	F-box/LRR-repeat protein	no	no	0.349	0.399	0.308	1e-10
Q9UKC9		423	F-box/LRR-repeat protein	no	no	0.349	0.399	0.308	2e-10
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.349	0.399	0.297	8e-10

>sp\|Q8VYT5\|FB254_ARATH F-box protein At5g07670 OS=Arabidopsis thaliana GN=At5g07670 PE=2 SV=1	Back alignment and function desciption

 Score =  555 bits (1429), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 294/470 (62%), Positives = 343/470 (72%), Gaps = 10/470 (2%)

Query: 20  SPNLSSKKKRAPSWSDIWPLKRVVFTMQLPESLPDGDKTLISNFSRI-----DRTLLLSD 74
           S  +S  KKR  SWS++W     + +   P  L    ++L    S+      D TLLL D
Sbjct: 9   SSPVSPLKKRRASWSELWVNHHHLLSSS-PLDLAAKFQSLTPPISKSKTLLPDFTLLLPD 67

Query: 75  DILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVD 134
            IL+R++ K+P SQR   SLVCKRW  L GRLVRS KV DWEFL SGRLISRFPNL  VD
Sbjct: 68  LILIRVIQKIPNSQRKNLSLVCKRWFRLHGRLVRSFKVSDWEFLSSGRLISRFPNLETVD 127

Query: 135 LVVGCFVRRMGAGVFWSHRLVSLHID-SCFSRFCDDEGMLLPVEIIDRGLKALACGCPNL 193
           LV GC +     G+  +HR+VS  +    +  +   E  LL VE+++RGLKALA GC NL
Sbjct: 128 LVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFEENLLSVELVERGLKALAGGCSNL 187

Query: 194 RRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVGNVEGFYNS 253
           R+LVV   SE GLL+VAEEC  LQE ELHKC D+VL GI A ENLQIL+LVGNV+G YNS
Sbjct: 188 RKLVVTNTSELGLLNVAEECSRLQELELHKCSDSVLLGIGAFENLQILRLVGNVDGLYNS 247

Query: 254 TVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRMDDGWLAAL 313
            VSDIGL ILAQGCKRLVKLEL GCEG FDGIK IG+CCQMLEELT  D++M+ GWL  L
Sbjct: 248 LVSDIGLMILAQGCKRLVKLELVGCEGGFDGIKEIGECCQMLEELTVCDNKMESGWLGGL 307

Query: 314 SYCENLKTLRFVSCKKIDPSPGPDEYLGSCL-ALERLHLQKCQLRDKKGVRALFRVCEAV 372
            YCENLKTL+ VSCKKID    PDE L  C  ALERL L+KCQLRDK  V+ALF++CEA 
Sbjct: 308 RYCENLKTLKLVSCKKIDND--PDESLSCCCPALERLQLEKCQLRDKNTVKALFKMCEAA 365

Query: 373 RELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCK 432
           RE+VFQDCWGLD+DIF  A  F R K L LEGCSL+TT GLESVIL W +L+ L+VVSCK
Sbjct: 366 REIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELEHLKVVSCK 425

Query: 433 NIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGTGMGKRGGKFFKK 482
           NIKD EVSP+LS LFS L EL+WRPDT+S L+SSL GTG+G++GGKFFKK
Sbjct: 426 NIKDSEVSPSLSALFSALVELQWRPDTRSHLSSSLTGTGIGEKGGKFFKK 475

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FGN3\|FB290_ARATH F-box protein At5g51380 OS=Arabidopsis thaliana GN=At5g51380 PE=2 SV=1	Back alignment and function description

>sp\|Q9FGN4\|FB289_ARATH F-box protein At5g51370 OS=Arabidopsis thaliana GN=At5g51370 PE=2 SV=1	Back alignment and function description

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q5BJ29\|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	Back alignment and function description

>sp\|Q9UJT9\|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1	Back alignment and function description

>sp\|A1A5X2\|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		483
255539811		531	ubiquitin-protein ligase, putative [Rici	0.968	0.881	0.711	0.0
449458367		526	PREDICTED: F-box protein At5g07670-like	0.989	0.908	0.660	1e-178
224071513		551	f-box family protein [Populus trichocarp	0.917	0.803	0.654	1e-176
356544275		497	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.954	0.927	0.678	1e-175
356529871		488	PREDICTED: LOW QUALITY PROTEIN: F-box pr	0.937	0.928	0.646	1e-164
225455064		478	PREDICTED: F-box protein At5g07670 [Viti	0.931	0.941	0.671	1e-162
147862018		485	hypothetical protein VITISV_040234 [Viti	0.929	0.925	0.668	1e-161
297745078		512	unnamed protein product [Vitis vinifera]	0.923	0.871	0.670	1e-160
225453517		473	PREDICTED: F-box protein At5g07670 [Viti	0.929	0.949	0.635	1e-156
30682042		476	F-box protein [Arabidopsis thaliana] gi\|	0.952	0.966	0.625	1e-155

>gi\|255539811\|ref\|XP_002510970.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223550085\|gb\|EEF51572.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/493 (71%), Positives = 402/493 (81%), Gaps = 25/493 (5%)

Query: 15  PVRNPSPNLSSKKKRAPSWSDIW-----PLKRVVFTMQL-------PESLPDG------- 55
           P   P+PN + KKKR PSWSD W     PLK VVF MQL       P +  D        
Sbjct: 8   PTTEPNPNPTLKKKRPPSWSDFWLKNTKPLKHVVFAMQLQSLASPTPTNDKDSKTKNITK 67

Query: 56  --DKTLISNFSRIDRTLLLSDDILLRILSKLPVSQRNANSLVCKRWLNLQGRLVRSLKVL 113
             D+TLISNFS  DRTLLLSD++LL+ILS LP +Q+N N LVCKRWLN+QGRLVRSLKVL
Sbjct: 68  TKDQTLISNFSNSDRTLLLSDELLLKILSTLPDTQKNHNFLVCKRWLNVQGRLVRSLKVL 127

Query: 114 DWEFLESGRLISRFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDD---- 169
           DWEF+ESGRLI+RFPNL++VDL+ GC +    + ++ +HR++S+ IDS    F  +    
Sbjct: 128 DWEFIESGRLIARFPNLTHVDLMNGCIITPHNSTLWLNHRVLSMQIDSGVLGFVPNWNIC 187

Query: 170 EGMLLPVEIIDRGLKALACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVL 229
           E  LLPV+I+DRGLKALAC CPNLR+LVV+GASE GLLSVAEECLTLQE ELHKC DNVL
Sbjct: 188 EQNLLPVDIVDRGLKALACACPNLRKLVVIGASELGLLSVAEECLTLQELELHKCNDNVL 247

Query: 230 RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIG 289
           RGIAACENLQILKLVGNV G Y+S VSDIGLTILAQG KRLVKLELSGCEGSFDGIKAIG
Sbjct: 248 RGIAACENLQILKLVGNVGGLYSSLVSDIGLTILAQGSKRLVKLELSGCEGSFDGIKAIG 307

Query: 290 QCCQMLEELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERL 349
           QCCQMLEELTFSDHRMDDGWL+A+SYCENLKTLRF+SCKKID  PG DE+LGSC ALERL
Sbjct: 308 QCCQMLEELTFSDHRMDDGWLSAISYCENLKTLRFLSCKKIDLHPGLDEFLGSCQALERL 367

Query: 350 HLQKCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVT 409
           HL KCQLRDK+ +RA+F+VC+ VRE+VFQDCWGLD+D+F FA + R+ K LSLEGCSL+T
Sbjct: 368 HLHKCQLRDKRSIRAMFKVCQGVREIVFQDCWGLDNDMFSFASICRKVKLLSLEGCSLLT 427

Query: 410 TEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAG 469
           T+GLESV+L++ +LQ L V SCK IKD EVSPALSTLFS LKELKWRPD KSLLA SL G
Sbjct: 428 TQGLESVLLTYNELQHLTVRSCKRIKDYEVSPALSTLFSGLKELKWRPDAKSLLAPSLVG 487

Query: 470 TGMGKRGGKFFKK 482
           TGMG++GGKFFKK
Sbjct: 488 TGMGRKGGKFFKK 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449458367\|ref\|XP_004146919.1\| PREDICTED: F-box protein At5g07670-like [Cucumis sativus] gi\|449524196\|ref\|XP_004169109.1\| PREDICTED: F-box protein At5g07670-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224071513\|ref\|XP_002303496.1\| f-box family protein [Populus trichocarpa] gi\|222840928\|gb\|EEE78475.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356544275\|ref\|XP_003540579.1\| PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g07670-like [Glycine max]	Back alignment and taxonomy information

>gi\|356529871\|ref\|XP_003533510.1\| PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g07670-like [Glycine max]	Back alignment and taxonomy information

>gi\|225455064\|ref\|XP_002263969.1\| PREDICTED: F-box protein At5g07670 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147862018\|emb\|CAN82961.1\| hypothetical protein VITISV_040234 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297745078\|emb\|CBI38670.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225453517\|ref\|XP_002275490.1\| PREDICTED: F-box protein At5g07670 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30682042\|ref\|NP_196384.2\| F-box protein [Arabidopsis thaliana] gi\|75248498\|sp\|Q8VYT5.1\|FB254_ARATH RecName: Full=F-box protein At5g07670 gi\|17979057\|gb\|AAL49796.1\| unknown protein [Arabidopsis thaliana] gi\|20465475\|gb\|AAM20197.1\| unknown protein [Arabidopsis thaliana] gi\|222423582\|dbj\|BAH19760.1\| AT5G07670 [Arabidopsis thaliana] gi\|332003808\|gb\|AED91191.1\| F-box protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		483
TAIR\|locus:2160314		476	AT5G07670 "AT5G07670" [Arabido	0.921	0.934	0.600	7.4e-137
TAIR\|locus:2163690		479	AT5G51380 "AT5G51380" [Arabido	0.931	0.939	0.579	2.5e-136
TAIR\|locus:2163685		446	AT5G51370 "AT5G51370" [Arabido	0.801	0.867	0.625	2.8e-128
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.689	0.545	0.264	3e-21
TAIR\|locus:2166978		405	AT5G23340 [Arabidopsis thalian	0.693	0.827	0.260	3.8e-15
TAIR\|locus:2143320		642	AT5G27920 "AT5G27920" [Arabido	0.494	0.372	0.298	5.6e-15
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.438	0.486	0.285	1.1e-13
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.438	0.486	0.285	1.1e-13
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.438	0.486	0.281	1.9e-13
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.347	0.398	0.310	2.4e-12

TAIR\|locus:2160314 AT5G07670 "AT5G07670" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
 Identities = 280/466 (60%), Positives = 322/466 (69%)

Query:    17 RNPSPNLSSKKKRAPSWSDIW----------PLKRVVFTMQLPESLPDGDKTLISNFXXX 66
             +  SP +S  KKR  SWS++W          PL        L   +    KTL+ +F   
Sbjct:     7 KESSP-VSPLKKRRASWSELWVNHHHLLSSSPLDLAAKFQSLTPPISKS-KTLLPDFTLL 64

Query:    67 XXXXXXXXXXXXXXXXKLPVSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISR 126
                             K+P SQR   SLVCKRW  L GRLVRS KV DWEFL SGRLISR
Sbjct:    65 LPDLILIRVIQ-----KIPNSQRKNLSLVCKRWFRLHGRLVRSFKVSDWEFLSSGRLISR 119

Query:   127 FPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHID-SCFSRFCDDEGMLLPVEIIDRGLKA 185
             FPNL  VDLV GC +     G+  +HR+VS  +    +  +   E  LL VE+++RGLKA
Sbjct:   120 FPNLETVDLVSGCLISPPNLGILVNHRIVSFTVGVGSYQSWSFFEENLLSVELVERGLKA 179

Query:   186 LACGCPNLRRLVVVGASEFGLLSVAEECLTLQEFELHKCGDNVLRGIAACENLQILKLVG 245
             LA GC NLR+LVV   SE GLL+VAEEC  LQE ELHKC D+VL GI A ENLQIL+LVG
Sbjct:   180 LAGGCSNLRKLVVTNTSELGLLNVAEECSRLQELELHKCSDSVLLGIGAFENLQILRLVG 239

Query:   246 NVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHRM 305
             NV+G YNS VSDIGL ILAQGCKRLVKLEL GCEG FDGIK IG+CCQMLEELT  D++M
Sbjct:   240 NVDGLYNSLVSDIGLMILAQGCKRLVKLELVGCEGGFDGIKEIGECCQMLEELTVCDNKM 299

Query:   306 DDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCL-ALERLHLQKCQLRDKKGVRA 364
             + GWL  L YCENLKTL+ VSCKKID  P  DE L  C  ALERL L+KCQLRDK  V+A
Sbjct:   300 ESGWLGGLRYCENLKTLKLVSCKKIDNDP--DESLSCCCPALERLQLEKCQLRDKNTVKA 357

Query:   365 LFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQ 424
             LF++CEA RE+VFQDCWGLD+DIF  A  F R K L LEGCSL+TT GLESVIL W +L+
Sbjct:   358 LFKMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELE 417

Query:   425 SLRVVSCKNIKDGEVSPALSTLFSVLKELKWRPDTKSLLASSLAGT 470
              L+VVSCKNIKD EVSP+LS LFS L EL+WRPDT+S L+SSL GT
Sbjct:   418 HLKVVSCKNIKDSEVSPSLSALFSALVELQWRPDTRSHLSSSLTGT 463

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2163690 AT5G51380 "AT5G51380" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163685 AT5G51370 "AT5G51370" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYT5	FB254_ARATH	No assigned EC number	0.6255	0.9523	0.9663	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		483
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	2e-10
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	0.002

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 17/175 (9%)

Query: 216 LQEFELHKCG--DNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKL 273
           L+  EL+ C   D  L  ++ C  L+ L L G+        + D GL  LAQ C  L  L
Sbjct: 30  LEWLELYMCPISDPPLDQLSNCNKLKKLILPGSK------LIDDEGLIALAQSCPNLQVL 83

Query: 274 ELSGCEGSFD-GIKAIGQCCQMLEELTFSDHRM----DDGWLAALS-YCENLKTLRFVSC 327
           +L  CE   D GI A+   C  L+ +    HR      D  L+AL   C  L+T+ F  C
Sbjct: 84  DLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143

Query: 328 KKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRV--CEAVRELVFQDC 380
              D     +   G   +LERL L  C+    + + A+        +  L F+ C
Sbjct: 144 DVTDKGVW-ELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGC 197

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		483
KOG4341		483	consensus F-box protein containing LRR [General fu	99.96
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.93
KOG4341		483	consensus F-box protein containing LRR [General fu	99.85
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.55
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.52
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.5
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.49
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.43
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.34
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.3
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.23
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.19
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.08
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.94
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.87
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.63
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.59
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.53
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	98.52
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.38
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.31
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.29
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.18
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.18
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.14
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.14
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.09
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	97.89
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.86
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.85
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	97.84
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	97.77
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.74
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.71
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.67
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.64
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.54
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.49
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.34
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.34
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.23
KOG0472		565	consensus Leucine-rich repeat protein [Function un	96.97
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	96.66
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.65
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.58
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.49
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.29
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.27
KOG2997		366	consensus F-box protein FBX9 [General function pre	96.24
PLN03150		623	hypothetical protein; Provisional	95.94
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	95.91
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	95.91
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.86
PLN03150		623	hypothetical protein; Provisional	95.66
KOG4308		478	consensus LRR-containing protein [Function unknown	95.66
KOG0472		565	consensus Leucine-rich repeat protein [Function un	95.56
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.45
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.42
KOG4308		478	consensus LRR-containing protein [Function unknown	95.36
KOG0617		264	consensus Ras suppressor protein (contains leucine	95.26
PRK15386		426	type III secretion protein GogB; Provisional	95.15
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.13
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.11
PRK15386		426	type III secretion protein GogB; Provisional	94.74
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	94.38
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	93.85
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.58
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.17
PF13013		109	F-box-like_2: F-box-like domain	92.74
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.59
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.18
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	86.73
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	86.3
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	86.25
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.14
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.3

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.96  E-value=3.4e-30  Score=238.25  Aligned_cols=366  Identities=25%  Similarity=0.384  Sum_probs=286.5

Q ss_pred             CCcHHHHHHHhccCCcccchhhhhhhHHHH--HHHhhhhcccccccccccccch----hhhcC-CCceEEEeeccccccc
Q 011541           71 LLSDDILLRILSKLPVSQRNANSLVCKRWL--NLQGRLVRSLKVLDWEFLESGR----LISRF-PNLSNVDLVVGCFVRR  143 (483)
Q Consensus        71 ~LP~ell~~I~~~L~~~~~~~~~lVck~W~--~~~~~l~~~l~~~~~~~~~~~~----l~~~~-~~L~~l~l~~~~~~~~  143 (483)
                      .||.|++.+||++|+.+.+++++++|+.|.  ++++..|.+++.+++.......    ..+++ -.++.+.+++.....+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~  153 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD  153 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence            699999999999999999999999999996  4488999999998877654433    33444 4667888876554444


Q ss_pred             CCccccccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCC---ChHHHHHHHHhCCCCCEEE
Q 011541          144 MGAGVFWSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGA---SEFGLLSVAEECLTLQEFE  220 (483)
Q Consensus       144 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~  220 (483)
                      ............-.++.   ..+|        ..+++..+..+++.|++|+.|.+..|   ++..+..+++.|++|++|+
T Consensus       154 sslrt~~~~CpnIehL~---l~gc--------~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN  222 (483)
T KOG4341|consen  154 SSLRTFASNCPNIEHLA---LYGC--------KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN  222 (483)
T ss_pred             chhhHHhhhCCchhhhh---hhcc--------eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence            44333322221111111   1123        47888889999999999999998875   4567777888999999999


Q ss_pred             eecCCccch----HHhhcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChH-HHHHHHHcCcCC
Q 011541          221 LHKCGDNVL----RGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFD-GIKAIGQCCQML  295 (483)
Q Consensus       221 l~~~~~~~~----~~i~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~~~L  295 (483)
                      ++.|+...-    .....+.+++.+.+.||.      ...++.+..+...++-+.++++..|...+| .+..+...|..|
T Consensus       223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~------e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  223 LSWCPQISGNGVQALQRGCKELEKLSLKGCL------ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hccCchhhcCcchHHhccchhhhhhhhcccc------cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            998864433    233467778888888887      478888888888888888899888887777 788888889999


Q ss_pred             Ceeeecccc-CcHHHH-HHhhcCCCCcEEEeccCCCCCCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCcccc
Q 011541          296 EELTFSDHR-MDDGWL-AALSYCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVR  373 (483)
Q Consensus       296 ~~L~l~~~~-~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~  373 (483)
                      +.|..+++. .++... .....+++|+.|.+.+|...++. ++..+..+|+.|+.+++..|..+.+..+..++.+|+.|+
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            999998875 344444 44568899999999999988864 667778889999999999998888888999999999999


Q ss_pred             EEEccCCCCCCHHHHHHHh----cCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhccc
Q 011541          374 ELVFQDCWGLDDDIFRFAD----VFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSV  449 (483)
Q Consensus       374 ~L~L~~~~~~~d~~~~~~~----~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~  449 (483)
                      .|.++.|..++|++...+.    ....|+.+.+.+|+.+++..++.+. .|++|+.+++.+|..++.+++. .+...+|+
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~-~~~~~lp~  453 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAIS-RFATHLPN  453 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhH-HHHhhCcc
Confidence            9999999989888665443    3568999999999888988888865 7899999999999999998888 45567788


Q ss_pred             CcEEEee
Q 011541          450 LKELKWR  456 (483)
Q Consensus       450 L~~L~~~  456 (483)
                      ++..++-
T Consensus       454 i~v~a~~  460 (483)
T KOG4341|consen  454 IKVHAYF  460 (483)
T ss_pred             ceehhhc
Confidence            8887775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		483
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-53
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-26
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-22
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	6e-16
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-44
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-34
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-22
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-27
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-16
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-10
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A		466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	9e-06
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	5e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  188 bits (479), Expect = 2e-53
 Identities = 80/410 (19%), Positives = 148/410 (36%), Gaps = 32/410 (7%)

Query: 67  DRTLLLSDDILLRILSKLPVSQ-RNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLIS 125
              L   +++L  + S + + + RN+ SLVCK W  ++    R + + +   +    +I 
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 126 RFPNLSNVDLVVGCFVRRMGAGVFWSHRLVSLHIDSCFSRFCDDEGM-LLPVEIIDRGLK 184
           RFP + +V+L                   V   I++  S +   E + L  + + D  L+
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123

Query: 185 ALACGCPNLRRLVVVGASEF---GLLSVAEECLTLQEFELHKC-----GDNVLRGIAA-C 235
            +A    N + LV+     F   GL ++A  C  L+E +L +        + L       
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 236 ENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQML 295
            +L  L +         S VS   L  L   C  L  L+L+      + +  + Q    L
Sbjct: 184 TSLVSLNISC-----LASEVSFSALERLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQL 237

Query: 296 EELTFSD--HRMDDGWLAALS-YCENLKTLRFVSCKKIDPSPGPDEYLGSCLALERLHLQ 352
           EEL        +     + LS      K LR +S                C  L  L+L 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 353 KCQLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKFLSL--------EG 404
              ++    +  L   C  ++ L   D    D  +   A   +  + L +        E 
Sbjct: 298 YATVQS-YDLVKLLCQCPKLQRLWVLDYIE-DAGLEVLASTCKDLRELRVFPSEPFVMEP 355

Query: 405 CSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKELK 454
              +T +GL SV +    L+S+ +  C+ + +  +   ++     +   +
Sbjct: 356 NVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALI-TIARNRPNMTRFR 403

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		483
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.96
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.88
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.75
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.71
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.68
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.62
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.61
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.58
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.55
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.54
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.53
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.5
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.49
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.49
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.49
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.48
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.43
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.43
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.43
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.43
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.42
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.4
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.39
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.38
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.38
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.38
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.38
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.38
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.37
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.37
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.36
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.36
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.36
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.35
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.35
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.35
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.33
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.33
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.32
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.31
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.31
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.31
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.31
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.29
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.28
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.27
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.26
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.26
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.25
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.25
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.24
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.24
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.23
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.22
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.21
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.2
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.19
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.14
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.13
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.12
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.12
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.11
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.1
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.09
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.06
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.03
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.01
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.01
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.0
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.99
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.98
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.95
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.93
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.93
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	98.93
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.92
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.9
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	98.87
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.81
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.67
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.66
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.66
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.64
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.62
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.56
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.48
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.48
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.44
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.43
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.42
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.39
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.38
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.35
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.34
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.33
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.32
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.32
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.31
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.29
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.26
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.26
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.23
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.22
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.21
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.2
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.18
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.11
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	98.06
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.05
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.02
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.82
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	97.76
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.7
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.66
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.62
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.59
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.58
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.55
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.53
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.53
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.44
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.39
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.38
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.27
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.84
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.62
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.57
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.51
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.48
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.46
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.44
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.44
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.3
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.14
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	94.1
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	90.82
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	89.27
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	85.82
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	82.87

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=4.3e-33  Score=291.49  Aligned_cols=386  Identities=21%  Similarity=0.248  Sum_probs=269.7

Q ss_pred             CccCCCCcHHHHHHHhccCC-cccchhhhhhhHHHHHHHhhhhcccccccccccccchhhhcCCCceEEEeecccccccC
Q 011541           66 IDRTLLLSDDILLRILSKLP-VSQRNANSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLISRFPNLSNVDLVVGCFVRRM  144 (483)
Q Consensus        66 ~d~~~~LP~ell~~I~~~L~-~~~~~~~~lVck~W~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~  144 (483)
                      .|.|++||+|++.+||+||+ .+|+.++++|||+|+.+....|+++++..+.......++.++++++.+++.+.......
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence            47899999999999999999 78999999999999999888899999888777777888999999999999875432211


Q ss_pred             C-----ccc----c------ccccceeeeecCCCcccccccCCCCCcccchHHHHHHHhcCCCccEEEEcCC---ChHHH
Q 011541          145 G-----AGV----F------WSHRLVSLHIDSCFSRFCDDEGMLLPVEIIDRGLKALACGCPNLRRLVVVGA---SEFGL  206 (483)
Q Consensus       145 ~-----~~~----~------~~~~~~~l~l~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~l  206 (483)
                      .     +..    +      ....+..+++.              ...+++..+..+.+.+++|++|++.++   +..++
T Consensus        83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~--------------~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  148 (594)
T 2p1m_B           83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK--------------RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL  148 (594)
T ss_dssp             TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE--------------SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHH
T ss_pred             ccccccccchhhHHHHHHHHhCCCCCeEEee--------------CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHH
Confidence            1     100    1      11133344433              356888888888888999999999976   45668


Q ss_pred             HHHHHhCCCCCEEEeecCC--ccchHHh----hcCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCC
Q 011541          207 LSVAEECLTLQEFELHKCG--DNVLRGI----AACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEG  280 (483)
Q Consensus       207 ~~~~~~~~~L~~L~l~~~~--~~~~~~i----~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  280 (483)
                      ..+...|++|++|++++|.  +.....+    ..+++|++|++.++..     .+++..+..+...+++|++|++++|..
T Consensus       149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS-----EVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCS-----CCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCC-----cCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            8888899999999999884  2222223    2678999999998741     367788888888899999999999853


Q ss_pred             ChHHHHHHHHcCcCCCeeeecccc------------------------------CcHHHHHHhhcCCCCcEEEeccCCCC
Q 011541          281 SFDGIKAIGQCCQMLEELTFSDHR------------------------------MDDGWLAALSYCENLKTLRFVSCKKI  330 (483)
Q Consensus       281 ~~~~l~~l~~~~~~L~~L~l~~~~------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~  330 (483)
                      .. .+..+...+++|++|.+..+.                              ....+...+..+++|++|++.+|. +
T Consensus       224 ~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l  301 (594)
T 2p1m_B          224 LE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-V  301 (594)
T ss_dssp             HH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-C
T ss_pred             HH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-C
Confidence            33 366667777888888754432                              111122222356788888888777 5


Q ss_pred             CCCCChHHHhcCCCCccEEeccccccccHHHHHHHHhcCccccEEEc--------cCCCCCCHHHHH-HHhcCCCCcEEE
Q 011541          331 DPSPGPDEYLGSCLALERLHLQKCQLRDKKGVRALFRVCEAVRELVF--------QDCWGLDDDIFR-FADVFRRAKFLS  401 (483)
Q Consensus       331 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L--------~~~~~~~d~~~~-~~~~~~~L~~L~  401 (483)
                      ++ ..+..++..+++|++|++.+|  +++.++..+...|++|++|++        ..+..+++.... +...+++|+.|.
T Consensus       302 ~~-~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          302 QS-YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CH-HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CH-HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            53 234555678888888888877  567778888777888888888        345566666554 445688888886


Q ss_pred             ecCCCCCCHHHHHHHHhcCcccceeeee-----cCCCCC----ccchHHHHhhhcccCcEEEeecC------------Cc
Q 011541          402 LEGCSLVTTEGLESVILSWTDLQSLRVV-----SCKNIK----DGEVSPALSTLFSVLKELKWRPD------------TK  460 (483)
Q Consensus       402 l~~~~~lt~~~l~~l~~~~~~L~~L~l~-----~c~~i~----~~~v~~~l~~~~~~L~~L~~~~~------------~~  460 (483)
                      +.++ .+++.++..+...+++|+.|++.     +|..++    +.++. .+...|++|++|.+...            .+
T Consensus       379 ~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~  456 (594)
T 2p1m_B          379 YFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG-AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK  456 (594)
T ss_dssp             EEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH-HHHHHCTTCCEEECCSSCCHHHHHHHHHHCT
T ss_pred             HhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH-HHHhhCCCccEEeecCcccHHHHHHHHHhch
Confidence            6544 78888888887778888888888     677777    33443 33455677777777431            23


Q ss_pred             ccccccccccccccccc
Q 011541          461 SLLASSLAGTGMGKRGG  477 (483)
Q Consensus       461 ~~~~~~~~~~~~~~~g~  477 (483)
                      .+-..+|++..+++.|.
T Consensus       457 ~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             TCCEEEEESCCSSHHHH
T ss_pred             hccEeeccCCCCcHHHH
Confidence            34445555555555444

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		483
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-04
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2ovrb1		102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.002

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 38/212 (17%), Positives = 66/212 (31%), Gaps = 10/212 (4%)

Query: 222 HKCGDNVLRGIAACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGS 281
               D  L    +   +Q + L  +        +    L  +   C +L  L L G   S
Sbjct: 32  RSFMDQPLAEHFSPFRVQHMDLSNS-------VIEVSTLHGILSQCSKLQNLSLEGLRLS 84

Query: 282 FDGIKAIGQCCQMLE-ELTFSDHRMDDGWLAALSYCENLKTLRFVSCKKIDPSPGPDEYL 340
              +  + +   ++   L+      +      LS C  L  L    C             
Sbjct: 85  DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144

Query: 341 GSCLALERLHLQKC-QLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFRFADVFRRAKF 399
                + +L+L    +   K  +  L R C  +  L   D   L +D F+        + 
Sbjct: 145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204

Query: 400 LSLEGCSLVTTEGLESVILSWTDLQSLRVVSC 431
           LSL  C  +  E L   +     L++L+V   
Sbjct: 205 LSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI 235

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		483
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.84
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.58
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.15
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.0
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.99
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.88
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.87
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.86
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.8
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.79
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.76
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.69
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.68
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.67
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.67
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.64
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.6
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.56
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.53
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.52
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.35
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.33
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.31
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.3
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.25
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.2
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.18
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.12
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.07
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.01
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.8
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.77
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.52
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.32
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.78
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.73
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.03
d2ifga3		156	High affinity nerve growth factor receptor, N-term	95.52
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	95.43

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.8e-22  Score=184.64  Aligned_cols=206  Identities=21%  Similarity=0.249  Sum_probs=167.3

Q ss_pred             cCCCCCEEEeecCCCCccccccChHHHHHHHhcCCCCcEEEeeCCCCChHHHHHHHHcCcCCCeeeecccc-CcHH-HHH
Q 011541          234 ACENLQILKLVGNVEGFYNSTVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGQCCQMLEELTFSDHR-MDDG-WLA  311 (483)
Q Consensus       234 ~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~-~~~  311 (483)
                      ...+|++|++++|.       +++..+..+...|++|++|++.+|......+..++. +++|++|+++++. +.+. ...
T Consensus        44 ~~~~L~~LdLs~~~-------i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          44 SPFRVQHMDLSNSV-------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCBCCCEEECTTCE-------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHH
T ss_pred             cCCCCCEEECCCCc-------cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccch
Confidence            45688889888875       888888888888999999999998755556666654 7889999998864 4443 444


Q ss_pred             HhhcCCCCcEEEeccCCCCCCCCChHH-HhcCCCCccEEecccc-ccccHHHHHHHHhcCccccEEEccCCCCCCHHHHH
Q 011541          312 ALSYCENLKTLRFVSCKKIDPSPGPDE-YLGSCLALERLHLQKC-QLRDKKGVRALFRVCEAVRELVFQDCWGLDDDIFR  389 (483)
Q Consensus       312 ~l~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~d~~~~  389 (483)
                      ....+++|++|++++|..+++. ++.. ....+++|+.|++++| ..+++.++..+...|++|++|++.+|..++|..+.
T Consensus       116 l~~~~~~L~~L~ls~c~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         116 LLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hhHHHHhccccccccccccccc-cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh
Confidence            5568999999999999877753 3333 3455789999999987 46888999999999999999999999899999888


Q ss_pred             HHhcCCCCcEEEecCCCCCCHHHHHHHHhcCcccceeeeecCCCCCccchHHHHhhhcccCcE
Q 011541          390 FADVFRRAKFLSLEGCSLVTTEGLESVILSWTDLQSLRVVSCKNIKDGEVSPALSTLFSVLKE  452 (483)
Q Consensus       390 ~~~~~~~L~~L~l~~~~~lt~~~l~~l~~~~~~L~~L~l~~c~~i~~~~v~~~l~~~~~~L~~  452 (483)
                      .+..+++|++|+|++|..+++.++..+. .+|+|+.|++.+|  +++.++. .+...+|+|+.
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~--~~d~~l~-~l~~~lp~L~i  253 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQ-LLKEALPHLQI  253 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHH-HHHHHSTTSEE
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC--CCHHHHH-HHHHhCccccc
Confidence            8889999999999999999999988764 6899999999998  7777776 56667788763

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure