Citrus Sinensis ID: 011556

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MALLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDTRTIQPSSLLPSSICDTSTKANERKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEEEEEEEccccccccEEEEcccccccccccccEEEEccccccHHHHHHcccccccEEEEEcccccccEEEEEcccccccccccEEEEEccccccccccccEEEcEEEEccEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
cHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEcccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccEEEEEEEEccccEEEEEEEEcccccEEEccccccHHHHHccccccccccccccEEcccccHHHHHccccccccccccccccEEEEEEcccccEEEEEEEEEEEEccEEEcccEEEEEcccccccccccccEEcccccccEEHHHcccccccEEEEEEccccccccEEEEcccccccccccEEEEEEEEcccccEEEEEEEEEEEEccEEEEccccHccccEEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccEEEEEEEccEEEEcccccEEEEEcccEEEEEEccccccccEEEEEEEEEEEEEEEEEccccEEEEcccccc
MALLRILLFACVLSLRLLCSLEeglafeetetaesqhdtrtiqpssllpssicdtstKANERKATLKVVHkhgpcnkldggnakfpsqAEILQQdqsrvnsihsksrlsknsvgadvketdattipakdgsvvatgDYVVTvgigtpkkdlslvfdtgsdltwtqcepclrfcyqqkepiydpsasrtyanvSCSSAICdslesgtgmtpqcagstcvygieygdnsfsagffaketltltssdvfpnflfgcgqynrglyGQAAGllglgqdsiSLVSQTSRKYKKYfsyclpssssstghltfgkaagngpsktikftplstatadssfygLDIIglsvggkklpipisvfssagaiidsgtvitrlppaaYSALRSTFKKFMskyptapalsildtcydfsnytsisvPVISFFFNRGVEVSIEGSAILIGSSPKQICLAfagnsddsdvaIIGNVQQKTLEVVYDVAQRrvgfapkgcs
MALLRILLFACVLSLRLLCSLEEGLAFEetetaesqhdtrtiqpssllpssICDTSTKANERKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDqsrvnsihsksrlsknsvgadvketdattipakdgsvvatGDYVVTVGigtpkkdlSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRrvgfapkgcs
MALLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDTRTIQPSSLLPSSICDTSTKANERKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRglygqaagllglgqDSISLVSQTSRKYKKYFSYCLPsssssTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS
**LLRILLFACVLSLRLLCSLEEGLAF*****************************************************************************************************DGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLP**********************IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGF******
***LRILLFACVLSLRLLCSLEEGLAFE******************************************KH*****************EILQQDQSRVNS*****************************SVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQK********SR**ANVSCSSAICDSLES*******CAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKK**********LSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS
MALLRILLFACVLSLRLLCSLEEGLAFE***************PSSLLPSSICDTSTKANERKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS
MALLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDTRTIQPSSLLPSSICD*******RKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSK***********ATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDTRTIQPSSLLPSSICDTSTKANERKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.811 0.834 0.356 6e-63
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.780 0.754 0.364 9e-59
Q766C2438 Aspartic proteinase nepen N/A no 0.732 0.808 0.372 8e-54
Q766C3437 Aspartic proteinase nepen N/A no 0.689 0.762 0.356 2e-48
Q6XBF8437 Aspartic proteinase CDR1 no no 0.795 0.878 0.335 2e-46
Q3EBM5447 Probable aspartic proteas no no 0.838 0.906 0.288 2e-34
Q9S9K4475 Aspartic proteinase-like no no 0.701 0.713 0.271 8e-30
Q9LZL3453 Aspartic proteinase PCS1 no no 0.670 0.715 0.292 7e-26
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.494 0.582 0.311 8e-15
Q0IU52410 Aspartic proteinase Asp1 no no 0.689 0.812 0.255 1e-14
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function desciption
 Score =  242 bits (617), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 233/441 (52%), Gaps = 49/441 (11%)

Query: 63  KATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDA 122
           K TL+++H+            +FPS        ++  + +H++ R   + V A ++    
Sbjct: 58  KYTLRLLHRD-----------RFPSVTY-----RNHHHRLHARMRRDTDRVSAILRRISG 101

Query: 123 TTIPAKD--------------GSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEP 168
             IP+ D              G    +G+Y V +G+G+P +D  +V D+GSD+ W QC+P
Sbjct: 102 KVIPSSDSRYEVNDFGSDIVSGMDQGSGEYFVRIGVGSPPRDQYMVIDSGSDMVWVQCQP 161

Query: 169 CLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSF 228
           C + CY+Q +P++DP+ S +Y  VSC S++CD +E+       C    C Y + YGD S+
Sbjct: 162 C-KLCYKQSDPVFDPAKSGSYTGVSCGSSVCDRIENS-----GCHSGGCRYEVMYGDGSY 215

Query: 229 SAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKY 288
           + G  A ETLT   + V  N   GCG  NRG++  AAGLLG+G  S+S V Q S +    
Sbjct: 216 TKGTLALETLTFAKT-VVRNVAMGCGHRNRGMFIGAAGLLGIGGGSMSFVGQLSGQTGGA 274

Query: 289 FSYCLPS-SSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLP 347
           F YCL S  + STG L FG+ A         + PL       SFY + + GL VGG ++P
Sbjct: 275 FGYCLVSRGTDSTGSLVFGREA---LPVGASWVPLVRNPRAPSFYYVGLKGLGVGGVRIP 331

Query: 348 IPISVFS-----SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYD 402
           +P  VF        G ++D+GT +TRLP AAY A R  FK   +  P A  +SI DTCYD
Sbjct: 332 LPDGVFDLTETGDGGVVMDTGTAVTRLPTAAYVAFRDGFKSQTANLPRASGVSIFDTCYD 391

Query: 403 FSNYTSISVPVISFFFNRGVEVSIEGSAILIG-SSPKQICLAFAGNSDDSDVAIIGNVQQ 461
            S + S+ VP +SF+F  G  +++     L+        C AFA +   + ++IIGN+QQ
Sbjct: 392 LSGFVSVRVPTVSFYFTEGPVLTLPARNFLMPVDDSGTYCFAFAASP--TGLSIIGNIQQ 449

Query: 462 KTLEVVYDVAQRRVGFAPKGC 482
           + ++V +D A   VGF P  C
Sbjct: 450 EGIQVSFDGANGFVGFGPNVC 470
Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
225430555481 PREDICTED: aspartic proteinase nepenthes 0.973 0.977 0.571 1e-158
255548664494 Aspartic proteinase nepenthesin-2 precur 0.956 0.935 0.651 1e-157
224142001490 predicted protein [Populus trichocarpa] 0.983 0.969 0.661 1e-157
225430551490 PREDICTED: aspartic proteinase nepenthes 0.979 0.965 0.565 1e-154
24430421502 41 kD chloroplast nucleoid DNA binding p 0.983 0.946 0.548 1e-151
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.966 0.983 0.567 1e-149
22326716474 aspartyl protease family protein [Arabid 0.921 0.938 0.592 1e-147
8979711446 nucleoid DNA-binding protein cnd41-like 0.861 0.932 0.603 1e-146
449466304473 PREDICTED: protein ASPARTIC PROTEASE IN 0.900 0.919 0.573 1e-144
2541876502 CND41, chloroplast nucleoid DNA binding 0.979 0.942 0.540 1e-144
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/481 (57%), Positives = 362/481 (75%), Gaps = 11/481 (2%)

Query: 3   LLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDT-RTIQPSSLLPSSICDTSTKANE 61
           LL+ LL++ +LS +       GLAF+  +TA S   T   +  +SL+PSS+C  S K ++
Sbjct: 10  LLKFLLYSALLSSK------RGLAFQGRKTALSTPSTLHNVHITSLMPSSVCSPSPKGDD 63

Query: 62  RKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETD 121
           ++A+L+V+HKHGPC+KL     + PS+ ++L QD+SRVNSI  +SRL+KN       +  
Sbjct: 64  KRASLEVIHKHGPCSKLSQDKGRSPSRTQMLDQDESRVNSI--RSRLAKNPADGGKLKGS 121

Query: 122 ATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIY 181
             T+P+K GS + TG+YVVTVG+GTPK+DL+ +FDTGSDLTWTQCEPC R+CY Q+EPI+
Sbjct: 122 KVTLPSKSGSTIGTGNYVVTVGLGTPKRDLTFIFDTGSDLTWTQCEPCARYCYHQQEPIF 181

Query: 182 DPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLT 241
           +PS S +Y N+SCSS  CD L+SGTG +P C+ STCVYGI+YGD S+S GFFA++ L LT
Sbjct: 182 NPSKSTSYTNISCSSPTCDELKSGTGNSPSCSASTCVYGIQYGDQSYSVGFFAQDKLALT 241

Query: 242 SSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSSSSSTG 301
           S+DVF NFLFGCGQ NRGL+   AGL+GLG++++SLVSQT++KY K FSYCLPS+SSSTG
Sbjct: 242 STDVFNNFLFGCGQNNRGLFVGVAGLIGLGRNALSLVSQTAQKYGKLFSYCLPSTSSSTG 301

Query: 302 HLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIID 361
           +LTFG  +G G SK +KFTP    +   SFY L++I +SVGG+KL    SVFS+AG IID
Sbjct: 302 YLTFG--SGGGTSKAVKFTPSLVNSQGPSFYFLNLIAISVGGRKLSTSASVFSTAGTIID 359

Query: 362 SGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRG 421
           SGTVI+RLPP AYS LR++F++ MSKYP A   SILDTCYDFS Y ++ VP I+ +F+ G
Sbjct: 360 SGTVISRLPPTAYSDLRASFQQQMSKYPKAAPASILDTCYDFSQYDTVDVPKINLYFSDG 419

Query: 422 VEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481
            E+ ++ S I    +  Q+CLAFAGNSD +D+AI+GNVQQKT +VVYDVA  R+GFAP G
Sbjct: 420 AEMDLDPSGIFYILNISQVCLAFAGNSDATDIAILGNVQQKTFDVVYDVAGGRIGFAPGG 479

Query: 482 C 482
           C
Sbjct: 480 C 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548664|ref|XP_002515388.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223545332|gb|EEF46837.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224142001|ref|XP_002324349.1| predicted protein [Populus trichocarpa] gi|222865783|gb|EEF02914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|24430421|dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449466304|ref|XP_004150866.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] gi|449485213|ref|XP_004157102.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|2541876|dbj|BAA22813.1| CND41, chloroplast nucleoid DNA binding protein [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.964 0.983 0.554 6.5e-138
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.925 0.963 0.509 2.2e-112
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.898 0.896 0.373 7.7e-71
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.908 0.908 0.355 9.7e-64
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.863 0.859 0.366 2e-63
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.942 0.968 0.327 3e-62
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.780 0.754 0.337 1.1e-57
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.776 0.776 0.358 2e-56
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.815 0.901 0.338 2.5e-49
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.774 0.867 0.326 2.7e-45
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1350 (480.3 bits), Expect = 6.5e-138, P = 6.5e-138
 Identities = 268/483 (55%), Positives = 336/483 (69%)

Query:     3 LLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDTRTIQPSSLLPSSI--CDTSTKAN 60
             LL I++  C+  L L C+  +G   +E ET     D+ TIQ SSLLPSS   C  S +A+
Sbjct:     7 LLNIIIILCIC-LNLGCN--DGA--QERET-----DSHTIQVSSLLPSSSSSCVLSPRAS 56

Query:    61 ERKATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKET 120
               K++L V H+HG C++L+ G A  P   EIL+ DQ+RVNSIHSK  LSK      V E+
Sbjct:    57 TTKSSLHVTHRHGTCSRLNNGKATSPDHVEILRLDQARVNSIHSK--LSKKLATDHVSES 114

Query:   121 DATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPI 180
              +T +PAKDGS + +G+Y+VTVG+GTPK DLSL+FDTGSDLTWTQC+PC+R CY QKEPI
Sbjct:   115 KSTDLPAKDGSTLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPI 174

Query:   181 YDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL 240
             ++PS S +Y NVSCSSA C SL S TG    C+ S C+YGI+YGD SFS GF AKE  TL
Sbjct:   175 FNPSKSTSYYNVSCSSAACGSLSSATGNAGSCSASNCIYGIQYGDQSFSVGFLAKEKFTL 234

Query:   241 TSSDVFPNFLFGCGQYNRXXXXXXXXXXXXXXDSISLVSQTSRKYKKYFSYCLPXXXXXT 300
             T+SDVF    FGCG+ N+              D +S  SQT+  Y K FSYCLP     T
Sbjct:   235 TNSDVFDGVYFGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASYT 294

Query:   301 GHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360
             GHLTFG A   G S+++KFTP+ST T  +SFYGL+I+ ++VGG+KLPIP +VFS+ GA+I
Sbjct:   295 GHLTFGSA---GISRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGALI 351

Query:   361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNR 420
             DSGTVITRLPP AY+ALRS+FK  MSKYPT   +SILDTC+D S + ++++P ++F F+ 
Sbjct:   352 DSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSG 411

Query:   421 GVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480
             G  V +    I       Q+CLAFAGNSDDS+ AI GNVQQ+TLEVVYD A  RVGFAP 
Sbjct:   412 GAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPN 471

Query:   481 GCS 483
             GCS
Sbjct:   472 GCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.766
3rd Layer3.4.23.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-138
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-71
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-68
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-46
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-30
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 6e-25
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-21
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 4e-21
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 1e-15
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 3e-13
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 6e-13
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-12
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 2e-11
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 5e-11
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-09
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 1e-06
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 2e-05
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 6e-04
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.001
cd05487326 cd05487, renin_like, Renin stimulates production o 0.001
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.003
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  400 bits (1029), Expect = e-138
 Identities = 168/347 (48%), Positives = 212/347 (61%), Gaps = 51/347 (14%)

Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSA 197
           YVVTVG+GTP +D +++ DTGSDLTW QC+PC                            
Sbjct: 2   YVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------- 33

Query: 198 ICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYN 257
                              C+Y + YGD S++ G  A +TLTL SSDV P F FGCG  N
Sbjct: 34  -------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDN 74

Query: 258 RGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPS-SSSSTGHLTFGKAAGNGPSKT 316
            GL+G AAGLLGLG+  +SL SQT+  Y   FSYCLP  SSSS+G+L+FG AA       
Sbjct: 75  EGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAG-- 132

Query: 317 IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSA 376
             FTP+ +     +FY + + G+SVGG++LPIP + F + G IIDSGTVITRLPP+AY+A
Sbjct: 133 ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAA 192

Query: 377 LRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIG-S 435
           LR  F+  M+ YP AP  SILDTCYD S + S+SVP +S  F  G +V ++ S +L    
Sbjct: 193 LRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD 252

Query: 436 SPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
              Q+CLAFAG SDD  ++IIGNVQQ+T  VVYDVA  R+GFAP GC
Sbjct: 253 DSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.95
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.75
PF1365090 Asp_protease_2: Aspartyl protease 95.63
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.46
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.36
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 91.78
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 91.43
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.24
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 90.09
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 89.29
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 85.76
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 83.63
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 80.74
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-75  Score=609.50  Aligned_cols=394  Identities=34%  Similarity=0.641  Sum_probs=327.8

Q ss_pred             CCceEEEEEcCCCCCCCCCCCC-CCCCCHHHHHHHhHHHHHHhhhccccccCCCCCCccCCCceeeecccCCccCcceEE
Q 011556           61 ERKATLKVVHKHGPCNKLDGGN-AKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATGDYV  139 (483)
Q Consensus        61 ~~~~~~~l~hr~~p~sp~~~~~-~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Y~  139 (483)
                      +++++++|+||++||||+.... ...+.++++++|+++|++++.++  ..             ...|+..+...++++|+
T Consensus        22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~-------------~~~~~~~~~~~~~~~Y~   86 (431)
T PLN03146         22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPT--DA-------------SPNDPQSDLISNGGEYL   86 (431)
T ss_pred             CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhc--cc-------------cCCccccCcccCCccEE
Confidence            4679999999999999985432 23456788899999999888655  21             11233334345678999


Q ss_pred             EEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC-CCce
Q 011556          140 VTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG-STCV  218 (483)
Q Consensus       140 ~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~-~~c~  218 (483)
                      ++|+||||+|++.|+|||||+++||+|.+|.. |+.|.++.|||++|+||+.++|+++.|..+..    ...|.. +.|.
T Consensus        87 v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~-C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~~~c~  161 (431)
T PLN03146         87 MNISIGTPPVPILAIADTGSDLIWTQCKPCDD-CYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDENTCT  161 (431)
T ss_pred             EEEEcCCCCceEEEEECCCCCcceEcCCCCcc-cccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCCCCCe
Confidence            99999999999999999999999999999965 99888899999999999999999999987653    234653 5699


Q ss_pred             eeEEcCCCCeEEEEEEEEEEEecCC----CccCceEEEEEEecCCCcc-CcceEeecCCCCCchhhhhccccCceEEEEc
Q 011556          219 YGIEYGDNSFSAGFFAKETLTLTSS----DVFPNFLFGCGQYNRGLYG-QAAGLLGLGQDSISLVSQTSRKYKKYFSYCL  293 (483)
Q Consensus       219 y~i~Ygdgs~~~G~~~~Dtl~l~~~----~~~~~~~FG~~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL  293 (483)
                      |.+.|+||+.+.|++++|+|+|++.    ..++++.|||++.+.+.|. ..+||||||++++|+++|+...++++|||||
T Consensus       162 y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL  241 (431)
T PLN03146        162 YSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL  241 (431)
T ss_pred             eEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence            9999999988899999999999873    2589999999999887664 5899999999999999999876677999999


Q ss_pred             CCCC---CCCceEEecCCCCCCCC-CCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccC---CCcEEEcccCcc
Q 011556          294 PSSS---SSTGHLTFGKAAGNGPS-KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS---SAGAIIDSGTVI  366 (483)
Q Consensus       294 ~~~~---~~~G~L~fGg~d~~~~~-~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~---~~~~iiDSGT~~  366 (483)
                      ++..   ...|.|+||+..  ++. ..+.||||+.+.. +.+|+|+|++|+||+++++++...|.   .+++||||||++
T Consensus       242 ~~~~~~~~~~g~l~fG~~~--~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~  318 (431)
T PLN03146        242 VPLSSDSNGTSKINFGTNA--IVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTL  318 (431)
T ss_pred             CCCCCCCCCcceEEeCCcc--ccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccc
Confidence            7632   247999999842  443 4589999986432 57999999999999999988776552   257999999999


Q ss_pred             ccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEe
Q 011556          367 TRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAG  446 (483)
Q Consensus       367 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~  446 (483)
                      |+||+++|++|+++|.+.+...+.......+++||+...  ...+|+|+|+|+ |+++.|++++|+++...+..|+++.+
T Consensus       319 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~  395 (431)
T PLN03146        319 TLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIP  395 (431)
T ss_pred             eecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEec
Confidence            999999999999999998865443333445789998543  257999999995 89999999999998777788999886


Q ss_pred             CCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556          447 NSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS  483 (483)
Q Consensus       447 ~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~  483 (483)
                      .   .+.+|||+.|||++||+||++++|||||+++|+
T Consensus       396 ~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        396 T---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             C---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            5   236999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 1e-08
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 1e-07
3vla_A413 Crystal Structure Of Edgp Length = 413 1e-07
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 4e-07
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 7e-07
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 1e-06
1htr_B329 Crystal And Molecular Structures Of Human Progastri 4e-06
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 5e-06
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 5e-06
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 6e-06
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 6e-06
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-06
2qu2_A415 Bace1 With Compound 1 Length = 415 7e-06
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 7e-06
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 7e-06
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 7e-06
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 7e-06
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 7e-06
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 7e-06
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 7e-06
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 7e-06
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 7e-06
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 7e-06
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 7e-06
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 8e-06
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 8e-06
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 8e-06
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 8e-06
3tpj_A433 Apo Structure Of Bace1 Length = 433 8e-06
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 8e-06
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 8e-06
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 8e-06
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 8e-06
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 8e-06
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 8e-06
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 8e-06
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 8e-06
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 8e-06
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 8e-06
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 8e-06
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 8e-06
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 8e-06
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 9e-06
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 9e-06
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 1e-05
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 1e-05
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 1e-05
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 2e-05
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 2e-05
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 2e-05
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-05
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 4e-05
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 1e-04
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 1e-04
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 2e-04
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 4e-04
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 6e-04
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 7e-04
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 7e-04
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 317 IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSA 376
           I +TP+     +  +Y ++I+ L +GG+ L +    +++  AI+DSGT + RLP   + A
Sbjct: 186 IWYTPIK----EEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDA 241
Query: 377 L------RSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVS 425
           +       S   +F   + T   L+    C+  S       P IS +      +R   ++
Sbjct: 242 VVEAVARASLIPEFSDGFWTGSQLA----CWTNSETPWSYFPKISIYLRDENSSRSFRIT 297
Query: 426 IEGSAI---LIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
           I        ++G+     C  F G S  ++  +IG    +   V++D AQ+RVGFA   C
Sbjct: 298 ILPQLYIQPMMGAGLNYECYRF-GISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPC 356
Query: 483 S 483
           +
Sbjct: 357 A 357
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 4e-93
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-89
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-81
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-30
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 5e-30
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-29
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-29
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 6e-29
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 7e-29
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-28
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 5e-28
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-26
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 6e-26
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-25
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-25
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 3e-25
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 3e-25
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-24
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-24
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-24
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 2e-24
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-24
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-24
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 8e-24
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-23
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 5e-23
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 7e-23
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-22
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-22
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-21
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 3e-16
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 7e-16
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-10
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 4e-08
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 7e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  287 bits (735), Expect = 4e-93
 Identities = 73/380 (19%), Positives = 131/380 (34%), Gaps = 40/380 (10%)

Query: 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVS 193
           +TG +   +   TP   + ++ D   +  W  CE         + P    +         
Sbjct: 19  STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYS-SKTYQAPFCHSTQCSRANTHQ 77

Query: 194 CSSAICDSLESGTGMTPQCAGSTC-VYGIEYGDNSFSAGFFAKETLTLTSSD-------- 244
           C S    S        P C  +TC +            G   ++ L + ++         
Sbjct: 78  CLSCPAASR-------PGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGP 130

Query: 245 --VFPNFLFGCGQY---NRGLYGQAAGLLGLGQDSISLVSQTSRKY--KKYFSYCLPSSS 297
               P FLF C       +GL     G+ GLG   ISL +Q +  +  ++ F+ CL    
Sbjct: 131 LVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYP 190

Query: 298 SSTGHLTFGKAAGN-------GPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPI 350
           +S G + FG A  N            + FTPL+        Y + +  + +    +    
Sbjct: 191 TSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTIT--LQGEYNVRVNSIRINQHSVFPLN 248

Query: 351 SVFSS------AGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFS 404
            + S+       G +I + T    L  + Y A    F + + K     +++    C++ +
Sbjct: 249 KISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSN 308

Query: 405 NYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSD-VAIIGNVQQKT 463
              +     +      G    I G  +++ + P   CL              +G  Q + 
Sbjct: 309 KINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEE 368

Query: 464 LEVVYDVAQRRVGFAPKGCS 483
             VV+D+A+ RVGF+     
Sbjct: 369 NLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.64
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 92.28
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 90.86
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 81.37
2hs1_A99 HIV-1 protease; ultra-high resolution active site 80.54
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=6.4e-64  Score=519.82  Aligned_cols=345  Identities=27%  Similarity=0.441  Sum_probs=287.7

Q ss_pred             CCceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccc
Q 011556          120 TDATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAIC  199 (483)
Q Consensus       120 ~~~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C  199 (483)
                      .+...+|++..  ..+++|+++|+||||+|++.|+|||||+++||+|.+|              .+|+||+.++|.++.|
T Consensus         6 ~~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c--------------~~Sst~~~v~C~s~~C   69 (413)
T 3vla_A            6 PSALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN--------------YVSSTYRPVRCRTSQC   69 (413)
T ss_dssp             CSEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS--------------CCCTTCEECBTTSHHH
T ss_pred             CccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC--------------CCCCCcCccCCCcccc
Confidence            35678899864  5689999999999999999999999999999999875              2799999999999999


Q ss_pred             cCccCCCC------CCCCCCCCCceeeEEc-CCCCeEEEEEEEEEEEecC--------CCccCceEEEEEEec--CCCcc
Q 011556          200 DSLESGTG------MTPQCAGSTCVYGIEY-GDNSFSAGFFAKETLTLTS--------SDVFPNFLFGCGQYN--RGLYG  262 (483)
Q Consensus       200 ~~~~~~~~------~~~~C~~~~c~y~i~Y-gdgs~~~G~~~~Dtl~l~~--------~~~~~~~~FG~~~~~--~g~~~  262 (483)
                      .....+.-      ....|.++.|.|.+.| +||+.+.|++++|+|+|++        ...++++.|||++.+  .+.+.
T Consensus        70 ~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~  149 (413)
T 3vla_A           70 SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLAS  149 (413)
T ss_dssp             HHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCT
T ss_pred             cccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccc
Confidence            87654310      0135666789999999 5888899999999999973        136889999999986  45666


Q ss_pred             CcceEeecCCCCCchhhhhcccc--CceEEEEcCCCCCCCceEEecCCCCCC-----CCCC-ceeeeCccCCCC------
Q 011556          263 QAAGLLGLGQDSISLVSQTSRKY--KKYFSYCLPSSSSSTGHLTFGKAAGNG-----PSKT-IKFTPLSTATAD------  328 (483)
Q Consensus       263 ~~~GilGLg~~~~Sl~sQ~~~~~--~~~FS~cL~~~~~~~G~L~fGg~d~~~-----~~~~-~~~tpl~~~~~~------  328 (483)
                      ..+||||||++++|+++|+..+.  +++|||||++.....|+|+||+.|...     +.++ ++||||+.++..      
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~  229 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST  229 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence            89999999999999999998753  589999999865568999999987532     5677 999999986532      


Q ss_pred             ----CccEEEEEeEEEECceecccCCcccC-----CCcEEEcccCccccccHHHHHHHHHHHHHhhc--cCCCCCCCCCC
Q 011556          329 ----SSFYGLDIIGLSVGGKKLPIPISVFS-----SAGAIIDSGTVITRLPPAAYSALRSTFKKFMS--KYPTAPALSIL  397 (483)
Q Consensus       329 ----~~~y~v~l~gisVgg~~l~~~~~~f~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~~~~~  397 (483)
                          ..+|.|+|++|+||++.+.++++.|.     .+++||||||++|+||+++|++|+++|.+.+.  .++...+...+
T Consensus       230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~  309 (413)
T 3vla_A          230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF  309 (413)
T ss_dssp             TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTC
T ss_pred             ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Confidence                27999999999999999998876663     26899999999999999999999999999875  34433334557


Q ss_pred             ccceecCCCcc----cccCeEEEEEcC-CcEEEEcCCceEEEcCCCeEEEEEEeCCCC-CCceEecHhhhcceEEEEECC
Q 011556          398 DTCYDFSNYTS----ISVPVISFFFNR-GVEVSIEGSAILIGSSPKQICLAFAGNSDD-SDVAIIGNVQQKTLEVVYDVA  471 (483)
Q Consensus       398 ~~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~  471 (483)
                      +.||+.++...    ..+|+|+|+|.| +++++|++++|+++...+..|++|...+.. .+.||||++|||++|+|||++
T Consensus       310 ~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~  389 (413)
T 3vla_A          310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLA  389 (413)
T ss_dssp             SCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETT
T ss_pred             cceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECC
Confidence            89999875532    479999999965 489999999999987667889998876432 368999999999999999999


Q ss_pred             CCEEEEeeC
Q 011556          472 QRRVGFAPK  480 (483)
Q Consensus       472 ~~rIGFa~~  480 (483)
                      ++|||||++
T Consensus       390 ~~riGfa~~  398 (413)
T 3vla_A          390 TSRVGFSGT  398 (413)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-59
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-40
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 2e-39
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-38
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 6e-38
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 7e-38
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-37
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 4e-37
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-37
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 8e-37
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 4e-36
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 5e-36
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-35
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 1e-35
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-35
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 3e-35
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 5e-35
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-34
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-33
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-32
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 9e-30
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-29
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  197 bits (501), Expect = 3e-59
 Identities = 67/374 (17%), Positives = 126/374 (33%), Gaps = 44/374 (11%)

Query: 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVS 193
           AT  Y +    G       LV D    L W+ C+   +   +          +  Y    
Sbjct: 12  ATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG-QPPAEIPCSSPTCLLANAYPAPG 65

Query: 194 CSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSD-------VF 246
           C +  C S         +       Y       + +AG  +       ++D       V 
Sbjct: 66  CPAPSCGS--------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 247 PNFLFGCGQYN--RGLYGQAAGLLGLGQDSISLVSQTSRKYK--KYFSYCLPSSSSSTGH 302
              L  C        L   + G+ GL    ++L +Q +   K    F  CLP+       
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 303 LTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDS 362
              G       ++++ +TPL T    S  + +    + VG  ++P+P    ++ G ++ +
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVT-KGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLST 236

Query: 363 GTVITRLPPAAYSALRSTFKKFMSKYP--------TAPALSILDTCYDFSNY----TSIS 410
                 L P  Y  L   F K ++              A++    CYD           +
Sbjct: 237 RLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296

Query: 411 VPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFA------GNSDDSDVAIIGNVQQKTL 464
           VP +    + G + ++ G   ++       C+AF            +   I+G  Q +  
Sbjct: 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDF 356

Query: 465 EVVYDVAQRRVGFA 478
            + +D+ ++R+GF+
Sbjct: 357 VLDFDMEKKRLGFS 370
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.4e-56  Score=456.69  Aligned_cols=351  Identities=23%  Similarity=0.390  Sum_probs=275.6

Q ss_pred             eEEEEEcCCCCCCCCCCCCCCCCCHHHHHHHhHHHHHHhhhccccccCCCCC-CccCCCceeeecccCCccCcceEEEEE
Q 011556           64 ATLKVVHKHGPCNKLDGGNAKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGA-DVKETDATTIPAKDGSVVATGDYVVTV  142 (483)
Q Consensus        64 ~~~~l~hr~~p~sp~~~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~Y~~~v  142 (483)
                      +++||.++              +++++.++++..+.++++.|  ........ ..........|+.+   +.+.+|+++|
T Consensus         2 v~ipl~k~--------------~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~n---~~d~~Y~~~i   62 (370)
T d3psga_           2 VKVPLVRK--------------KSLRQNLIKDGKLKDFLKTH--KHNPASKYFPEAAALIGDEPLEN---YLDTEYFGTI   62 (370)
T ss_dssp             EEEEEEEC--------------CCHHHHHHHTTCHHHHHHHC--CCCGGGGTCTTSCCSSCCCTTGG---GTTCCEEEEE
T ss_pred             EEEecccC--------------ccHHHHHHHcCcHHHHHHhc--ccchhhhhcccccCccccccccc---ccCCEEEEEE
Confidence            57888876              35788888887777777655  21110000 01122234456653   4578999999


Q ss_pred             EeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCCceeeEE
Q 011556          143 GIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIE  222 (483)
Q Consensus       143 ~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y~i~  222 (483)
                      .||||+|++.|+|||||+++||+|.+|.. |..+.++.|||++|+||+...                       |.|.+.
T Consensus        63 ~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~-~~~~~~~~yd~~~Sst~~~~~-----------------------~~~~~~  118 (370)
T d3psga_          63 GIGTPAQDFTVIFDTGSSNLWVPSVYCSS-LACSDHNQFNPDDSSTFEATS-----------------------QELSIT  118 (370)
T ss_dssp             EETTTTEEEEEEEETTCCCEEEEBTTCCS-GGGTTSCCBCGGGCTTCEEEE-----------------------EEEEEE
T ss_pred             EEcCCCeEEEEEEeCCCCCeEEECccCCC-cccccccccCCCcccccccCC-----------------------CcEEEE
Confidence            99999999999999999999999999965 777777999999999999876                       799999


Q ss_pred             cCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCc------h----hhhhccccCceE
Q 011556          223 YGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSIS------L----VSQTSRKYKKYF  289 (483)
Q Consensus       223 Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~S------l----~sQ~~~~~~~~F  289 (483)
                      |++|+ +.|.+++|++.+++. .++++.|||++...+.+   ...+||+|||++..+      +    ..|.... .++|
T Consensus       119 Yg~Gs-~~G~~~~d~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~-~~~f  195 (370)
T d3psga_         119 YGTGS-MTGILGYDTVQVGGI-SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVS-QDLF  195 (370)
T ss_dssp             SSSCE-EEEEEEEEEEEETTE-EEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSS-SSEE
T ss_pred             eCCce-EEEEEEEEEEeeece-eeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccc-ccee
Confidence            99996 889999999999985 89999999999887633   367999999987644      2    2333333 7999


Q ss_pred             EEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccc
Q 011556          290 SYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRL  369 (483)
Q Consensus       290 S~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~L  369 (483)
                      |+|+.......|.|+|||+|++++.++++|+|+..    ..+|.|.++++.|+++.+.....    ..+||||||++++|
T Consensus       196 s~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~l  267 (370)
T d3psga_         196 SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTG  267 (370)
T ss_dssp             EEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEE
T ss_pred             EEEeecCCCCCceEecCCcCchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeC
Confidence            99999877778999999999999999999999987    67999999999999988765443    46999999999999


Q ss_pred             cHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEE-EEEeCC
Q 011556          370 PPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICL-AFAGNS  448 (483)
Q Consensus       370 p~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~  448 (483)
                      |+++|++|++++.+...    .. .....+|+     ....+|+|+|+| ||+++.|++++|+++.  ...|+ +|....
T Consensus       268 p~~~~~~i~~~l~~~~~----~~-~~~~~~C~-----~~~~~P~l~f~f-~g~~~~l~~~~yi~~~--~~~c~~~~~~~~  334 (370)
T d3psga_         268 PTSAIANIQSDIGASEN----SD-GEMVISCS-----SIDSLPDIVFTI-DGVQYPLSPSAYILQD--DDSCTSGFEGMD  334 (370)
T ss_dssp             EHHHHHHHHHHTTCEEC----TT-CCEECCGG-----GGGGCCCEEEEE-TTEEEEECHHHHEEEC--SSCEEESEEEEC
T ss_pred             CHHHHHHHHHHhCCeee----cC-CcEEEecc-----ccCCCceEEEEE-CCEEEEEChHHeEEEc--CCeEEEEEEEcc
Confidence            99999999999876521    11 12233454     445799999999 7999999999999875  34465 454332


Q ss_pred             ---CCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556          449 ---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG  481 (483)
Q Consensus       449 ---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~  481 (483)
                         ...+.||||++|||++|+|||++++||||||++
T Consensus       335 ~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         335 VPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             CCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             cCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence               345679999999999999999999999999974
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure