Citrus Sinensis ID: 011558

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
Protein Sequence
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEEEccEEEEcccccEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccEEccccccccEEEccHHHHHHHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHcccccccccccccccccEEccccccHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEHHHHHHHHccccccccccccccHHHHHHccccccccccccccEEEEEcccccHHHHHHHHHcccccEEEEEEccccEEEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEEEEEEcccccEEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEEccEEEccccccccccccccEcEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHccccEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHccccccHHHcccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
mynsglntghensgvvgsilvpvrfiwpnggrrvslsgsftrwsepmpmspsegcpavfqiicrlppghhqykfyvdgewrhdenqphvsgnygvVNCVYIavpqpdmvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQadvssipivddndslldiysrsDITALAKDKAYAQIHLDEMNIHQALqlgqdanpslgfngqrcqmclrsdpLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Flexible Loop (DISEMBL)
mynsglntghensgvvGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSsipivddndslLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMErlanpgvrRLVIVEagskrvegiislsdVFRFLLGV
Low Complexity Region (SEG)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered region (IsUnstruct)
*************GVVGSILVPVRFIWPNGGRRVSLSGSFTRW**********GCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQ***************************FAQY**ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL**
Disordered Region (DISOPRED)
********************VPVRFIWPNGGRRVSLSGSFTRWSEPMP******CPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ**********FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISEMBL)
*********HENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRW*********EGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISPRO)
************SGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTIS******MEV*D*********QYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	483	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.991	0.983	0.729	0.0
P54619	331	5'-AMP-activated protein	yes	no	0.606	0.885	0.320	4e-33
Q09138	330	5'-AMP-activated protein	yes	no	0.606	0.887	0.320	4e-33
P58108	330	5'-AMP-activated protein	yes	no	0.608	0.890	0.315	4e-33
O54950	330	5'-AMP-activated protein	yes	no	0.608	0.890	0.315	6e-33
P80385	330	5'-AMP-activated protein	yes	no	0.608	0.890	0.312	1e-32
Q8T277	577	5'-AMP-activated protein	yes	no	0.645	0.540	0.292	1e-30
Q91WG5	566	5'-AMP-activated protein	no	no	0.602	0.514	0.301	2e-30
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.602	0.511	0.301	4e-30
Q5R4S0	524	5'-AMP-activated protein	no	no	0.602	0.555	0.298	1e-29

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/491 (72%), Positives = 407/491 (82%), Gaps = 12/491 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct: 357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query: 414 QALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472
           QALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIIS
Sbjct: 417 QALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIIS 476

Query: 473 LSDVFRFLLGV 483
           LSDVF+FLLG+
Sbjct: 477 LSDVFQFLLGL 487

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 388 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 447
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 448 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 388 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 447
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 448 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 136

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 137 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 190

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 191 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 241

Query: 389 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 448
           S+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ R
Sbjct: 242 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIINR 291

Query: 449 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           L    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 292 LVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  142 bits (358), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLQELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240

Query: 389 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 448
           S+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ R
Sbjct: 241 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIINR 290

Query: 449 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           L    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 LVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240

Query: 389 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 448
           S+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ R
Sbjct: 241 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINR 290

Query: 449 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           L    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 LVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 172/349 (49%), Gaps = 37/349 (10%)

Query: 137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 196
           +E  ++  +    +FL  HT Y+++P SGKV  LD  LAVK AF+ L E G+   PLW+ 
Sbjct: 256 TEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNS 315

Query: 197 FKGRFVGVLSALDFI-LILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNG 254
            +  F G+++  DFI ++L       SN   +++  H I   W+    +++++R      
Sbjct: 316 EQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWR----EISVER------ 365

Query: 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314
              P  L+   P  +L + A  +L  K+  +P++           IL++ + S IL  + 
Sbjct: 366 ---PSSLISTEPETNLYDAASLLLCYKIHRLPVVD----KKDTNSILHILTHSRILAFMM 418

Query: 315 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 374
           + F      L  L  P+ S+ +GT+   +      P         L   L LL +  +S+
Sbjct: 419 KSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP---------LVEVLELLSEKKISA 467

Query: 375 IPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 433
           +PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L         L    ++ 
Sbjct: 468 VPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS----TFTKLWQRPEQI 522

Query: 434 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482
             C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  +LL 
Sbjct: 523 YTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 321 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 367

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 368 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 421

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 422 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 472

Query: 391 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 450
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 473 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSKLETLETIVDRIV 522

Query: 451 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 523 RAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 324 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 370

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 371 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 424

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 425 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 475

Query: 391 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 450
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 476 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 525

Query: 451 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 526 RAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 162/332 (48%), Gaps = 41/332 (12%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 279 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 325

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 326 LDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 379

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 380 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 430

Query: 391 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 450
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 431 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 480

Query: 451 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              V RLV+  EA S  + GIISLSD+ + L+
Sbjct: 481 RAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.989	0.991	0.759	0.0
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.987	0.977	0.746	0.0
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.991	0.983	0.729	0.0
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.985	0.993	0.732	0.0
255542654	540	AMP-activated protein kinase, gamma regu	0.962	0.861	0.741	0.0
312281727	487	unnamed protein product [Thellungiella h	0.991	0.983	0.716	0.0
224123752	475	predicted protein [Populus trichocarpa]	0.981	0.997	0.704	0.0
224123152	488	predicted protein [Populus trichocarpa]	0.977	0.967	0.684	0.0
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.991	0.975	0.657	0.0
356573006	478	PREDICTED: sucrose nonfermenting 4-like	0.983	0.993	0.684	0.0

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/486 (75%), Positives = 417/486 (85%), Gaps = 8/486 (1%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVD-DVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVK 177
            NM++D D   R E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VK
Sbjct: 120 SNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 179

Query: 178 QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237
           QAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAW
Sbjct: 180 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 239

Query: 238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 297
           K GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS 
Sbjct: 240 KEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSF 296

Query: 298 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 357
            ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP 
Sbjct: 297 PQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPN 356

Query: 358 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 417
           ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M+IHQALQ
Sbjct: 357 ASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQ 416

Query: 418 LGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 476
           LGQDAN   GF +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG+ISLSDV
Sbjct: 417 LGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDV 476

Query: 477 FRFLLG 482
           FRFLLG
Sbjct: 477 FRFLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/493 (74%), Positives = 417/493 (84%), Gaps = 16/493 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVDDVVMRPEG--------FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTAL 170
            NM++D+    P G          + SEADL++SR R+S FLSTH  YELLP+SGKV AL
Sbjct: 120 SNMDLDNDPF-PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIAL 178

Query: 171 DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE 230
           DVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELE
Sbjct: 179 DVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELE 238

Query: 231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290
           THTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS
Sbjct: 239 THTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHS 295

Query: 291 TGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 350
               GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+P
Sbjct: 296 ASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQP 355

Query: 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 410
           FAMLRP ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M
Sbjct: 356 FAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNM 415

Query: 411 NIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 469
           +IHQALQLGQDAN   GF +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG
Sbjct: 416 SIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 475

Query: 470 IISLSDVFRFLLG 482
           +ISLSDVFRFLLG
Sbjct: 476 VISLSDVFRFLLG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/491 (72%), Positives = 407/491 (82%), Gaps = 12/491 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct: 357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query: 414 QALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472
           QALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIIS
Sbjct: 417 QALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIIS 476

Query: 473 LSDVFRFLLGV 483
           LSDVF+FLLG+
Sbjct: 477 LSDVFQFLLGL 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/486 (73%), Positives = 406/486 (83%), Gaps = 10/486 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQ 178
            NM+VDDV +R    A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQ
Sbjct: 119 SNMDVDDVFLRT---ADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQ 175

Query: 179 AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238
           AFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK
Sbjct: 176 AFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWK 235

Query: 239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ 298
            GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  
Sbjct: 236 EGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYP 293

Query: 299 EILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 358
           ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP A
Sbjct: 294 QLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHA 353

Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418
           SLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQL
Sbjct: 354 SLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQL 413

Query: 419 GQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 477
           GQD++P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF
Sbjct: 414 GQDSSPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 473

Query: 478 RFLLGV 483
           +FLLG+
Sbjct: 474 QFLLGL 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/475 (74%), Positives = 409/475 (86%), Gaps = 10/475 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH ++GV+     P+RF+WP GGR V LSG+FT W++ +PMSP EGCP VFQ
Sbjct: 1   MFGSGQDTGHGSTGVL-----PLRFVWPYGGRSVFLSGTFTGWTDHIPMSPVEGCPTVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWR+DE+QP VSGNYGVVN V++   +P+MVP   + ET+G 
Sbjct: 56  VICSLTPGYHQYKFFVDGEWRYDEHQPSVSGNYGVVNTVFLPR-EPNMVPPIPNSETAGS 114

Query: 120 NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQA 179
           NME+D+V +RPE   + SEADL++SR R S+FLSTHT YELLP+SGKV ALDVNL VKQA
Sbjct: 115 NMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGKVIALDVNLPVKQA 174

Query: 180 FHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKV 239
           FHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK 
Sbjct: 175 FHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKE 234

Query: 240 GKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 299
           GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+PIIHS+   GS  +
Sbjct: 235 GKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTIPIIHSSSRDGSFPQ 292

Query: 300 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 359
           +L+LASLS ILKCICRHF+HS+SSLP+LQQP+ SI LGTWVP+IGE+N RPFAMLRP AS
Sbjct: 293 LLHLASLSGILKCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGESNVRPFAMLRPNAS 352

Query: 360 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 419
           LG AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD+++IHQALQLG
Sbjct: 353 LGDALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDKISIHQALQLG 412

Query: 420 QDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 473
           QDAN   G FNGQRCQMCL SDPLHKVMERLANPGVRRL+IVEAGSKRVEG+ISL
Sbjct: 413 QDANSPYGFFNGQRCQMCLGSDPLHKVMERLANPGVRRLLIVEAGSKRVEGVISL 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/491 (71%), Positives = 403/491 (82%), Gaps = 12/491 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GV+N ++I     DMVP    PET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVMNTIFIT--GQDMVPTGFIPETLGR 118

Query: 120 -NMEVDDVVMR-----PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VD V  R      E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 ENMDVDGVFPRMTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           LRP ASLGSAL+LLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct: 357 LRPHASLGSALSLLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query: 414 QALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472
           QALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIIS
Sbjct: 417 QALQLGQDASPPYGIFNGQRCHMCLRSDSLLKVMERLANPGVRRLVIVEAGSKRVEGIIS 476

Query: 473 LSDVFRFLLGV 483
           LSDVF+FLLG+
Sbjct: 477 LSDVFQFLLGL 487

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/484 (70%), Positives = 398/484 (82%), Gaps = 10/484 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV+     PVRF+WP GG  VS+ G+FTRW + +PMSP EGCP VFQ
Sbjct: 1   MFGSGSSTGHDNSGVI-----PVRFVWPYGGGEVSIFGTFTRWIDLLPMSPVEGCPNVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           I+  L PG HQ+KF VDG+WR DE    V G YGVVN V +    P  + N+ +P  S N
Sbjct: 56  IVVSLVPGLHQFKFRVDGQWRVDEQLSFVDGPYGVVNTV-VLTKDPPQILNSETPGRS-N 113

Query: 121 MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAF 180
           ME+DDV + PE     S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAF
Sbjct: 114 MELDDVSVCPEVIQGISATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAF 173

Query: 181 HVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG 240
           H+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK G
Sbjct: 174 HILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEG 233

Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
           K+ LN  RQ+DG+GR   + L+ AGPYDS+K+V+LKILQN V+TVPIIHS    GS  ++
Sbjct: 234 KMHLN--RQIDGSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTVPIIHSASQDGSFPQL 291

Query: 301 LYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASL 360
           L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAMLRP ASL
Sbjct: 292 LHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLRPNASL 351

Query: 361 GSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 420
           G+AL+LL QA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIHLDE++IHQALQLGQ
Sbjct: 352 GAALSLLAQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHLDEISIHQALQLGQ 411

Query: 421 DANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479
           +AN S  F NGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGSKRVEG+ISLSDVFRF
Sbjct: 412 NANSSNAFYNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDVFRF 471

Query: 480 LLGV 483
           LLG+
Sbjct: 472 LLGI 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123152|ref|XP_002319007.1| predicted protein [Populus trichocarpa] gi|222857383|gb|EEE94930.1| predicted protein [Populus trichocarpa]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/498 (68%), Positives = 398/498 (79%), Gaps = 26/498 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV      PVRF+WP GG  VS+ G+FTRW++ +PMSP EGCP V+Q
Sbjct: 1   MFGSGSSTGHDNSGVS-----PVRFVWPYGGGEVSIFGTFTRWTDLIPMSPMEGCPNVYQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           ++  L PG HQ+KFYVDG+WR DE    VSG YG VN V +    P +    I  ET G 
Sbjct: 56  VVISLVPGLHQFKFYVDGQWRVDEQLSFVSGPYGPVNTVVLTKDPPQI----IDSETPGR 111

Query: 120 -NMEVDD------------VVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGK 166
            NME+DD            V    E     S ADL++SR RIS+FLSTHT YELLP+SGK
Sbjct: 112 SNMELDDYFFIGAELVTLLVGTFQEVIQGMSAADLEVSRHRISAFLSTHTAYELLPESGK 171

Query: 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226
           V ALDV L VK+AFH+LYEQG+P  PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTE
Sbjct: 172 VIALDVTLPVKRAFHILYEQGIPTAPLWDFCKGQFVGVLAALDFILILRELGTHGSNLTE 231

Query: 227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 286
           EELETHTISAWK GK+ L+  RQ+DG+GR   + L+ AGPYDSLK+VA KILQN ++TVP
Sbjct: 232 EELETHTISAWKEGKMHLS--RQIDGSGRAYSKHLIHAGPYDSLKDVASKILQNSISTVP 289

Query: 287 IIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 346
           I+HS+   GS  ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE 
Sbjct: 290 ILHSSAQDGSFPQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEP 349

Query: 347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH 406
           N RPFAML+P ASLG+AL+LLVQA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIH
Sbjct: 350 NRRPFAMLKPNASLGAALSLLVQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIH 409

Query: 407 LDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 465
           LDE++IHQALQLGQDAN S G FNGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGSK
Sbjct: 410 LDEISIHQALQLGQDANSSYGFFNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSK 469

Query: 466 RVEGIISLSDVFRFLLGV 483
           RVEG+ISLSDVFRFLLGV
Sbjct: 470 RVEGVISLSDVFRFLLGV 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/493 (65%), Positives = 390/493 (79%), Gaps = 14/493 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+   +++     GV G++L+P+RF+WP GGR V LSGSFTRW E +PMSP EGCP VFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           +I  LPPG+HQYKF+VDGEWRHDE+QP+V G+YG+VN V++A   P+ +P       SGN
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLAT-DPNYIPVLPPDVASGN 119

Query: 121 -MEVDDVVMR----------PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTA 169
            M+VD+   R           E   + S+ D+Q+SR RIS+FLS+HT YELLP+SGKV A
Sbjct: 120 SMDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 179

Query: 170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229
           LDV+L VKQAFH+L+EQG+ M PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEEL
Sbjct: 180 LDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 239

Query: 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIH 289
           ETHTISAWK GK  LN  RQ +G+G    R  + AGPYD+LK++A+KILQ +V+TVPIIH
Sbjct: 240 ETHTISAWKEGKSYLN--RQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIH 297

Query: 290 STGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR 349
           S+    S  ++L+LASLS ILKCICR+F+H SSSLP+LQ P+ +I +GTWVP+IGE+N +
Sbjct: 298 SSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRQ 357

Query: 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE 409
           P AMLRPTASL SAL LLVQA VSSIPIVDDNDSLLDIY RSDITALAK++AYA I+LDE
Sbjct: 358 PLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYAHINLDE 417

Query: 410 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 469
           M +HQALQLGQDA        QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG
Sbjct: 418 MTVHQALQLGQDAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 477

Query: 470 IISLSDVFRFLLG 482
           I+SL D+F+F +G
Sbjct: 478 IVSLRDIFKFFIG 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573006|ref|XP_003554656.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Glycine max]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/485 (68%), Positives = 393/485 (81%), Gaps = 10/485 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S ++   E SGV G IL+P RF+WP GG  V L+GSFTRWS  + MSP EGCPAVFQ
Sbjct: 1   MFASVVDGACEGSGVSGPILIPRRFVWPYGGTTVFLTGSFTRWSNHIAMSPMEGCPAVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           ++C L PG HQYKF VDGEWRHD+ QP V+G+ GVVN +YI V +PD++P+ ++ ET G 
Sbjct: 61  VVCNLMPGFHQYKFNVDGEWRHDDQQPFVNGSCGVVNTIYI-VREPDILPSILNTETPGR 119

Query: 120 -NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQ 178
            +MEVD++   P    +   +DL++SR RIS FLSTHT Y LLP+SGKV ALD+NL VKQ
Sbjct: 120 SHMEVDNMEANP----RMPVSDLEVSRHRISVFLSTHTAYNLLPESGKVIALDINLPVKQ 175

Query: 179 AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238
           AFHVLYEQG+ M PLWD FK +FVGVLSA+DFILIL+ELG +GSNLT+E+LETHTI+AWK
Sbjct: 176 AFHVLYEQGVSMAPLWDFFKSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWK 235

Query: 239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ 298
            GK Q    R +D NG   P   V AGP++ LK+VALK+LQNKV+TVPIIHS+   GS  
Sbjct: 236 EGKFQQF--RTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEDGSYP 293

Query: 299 EILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 358
           ++L+LASLS ILK ICRHFKHS SSLPILQ PV+SI LGTW+PR+GE NGRP AML P+A
Sbjct: 294 QLLHLASLSGILKGICRHFKHSLSSLPILQLPVASIPLGTWMPRVGEPNGRPLAMLMPSA 353

Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418
           SLG+AL++ VQA VSSIPIVD NDSLLDIYSRSDITALAKDKAYA+I LDE++IHQAL L
Sbjct: 354 SLGAALSMFVQAKVSSIPIVDANDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLL 413

Query: 419 GQDA-NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 477
           GQDA +PS  +NGQRC MCLRS+ L+KVMERLANPGVRRLV+VEAGSKRVEGIISLSDVF
Sbjct: 414 GQDATSPSGIYNGQRCHMCLRSESLYKVMERLANPGVRRLVVVEAGSKRVEGIISLSDVF 473

Query: 478 RFLLG 482
           RFLLG
Sbjct: 474 RFLLG 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	483
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.991	0.983	0.731	1.7e-187
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.405	0.601	0.285	1.4e-29
ZFIN|ZDB-GENE-060421-6938	342	zgc:136850 "zgc:136850" [Danio	0.337	0.476	0.327	3.2e-28
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.405	0.371	0.285	4.3e-28
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.403	0.345	0.284	4.9e-28
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.405	0.346	0.285	8.5e-28
UNIPROTKB|Q9UGJ0	569	PRKAG2 "5'-AMP-activated prote	0.405	0.344	0.285	2.5e-27
DICTYBASE|DDB_G0272542	577	prkag "AMP-activated protein k	0.341	0.285	0.311	1e-25
UNIPROTKB|F1P1P1	382	PRKAG3 "Uncharacterized protei	0.405	0.513	0.258	3.9e-24
CGD|CAL0001497	336	SNF4 [Candida albicans (taxid:	0.395	0.568	0.262	3.5e-18

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1818 (645.0 bits), Expect = 1.7e-187, P = 1.7e-187
 Identities = 359/491 (73%), Positives = 408/491 (83%)

Query:     1 MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
             M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    61 IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
             +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query:   120 -NMEVDDVVMR---P--EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
              NM+VDDV +R   P  E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct:   119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query:   174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
             L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct:   179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query:   234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
             I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct:   239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query:   294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
              GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct:   297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query:   354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
             LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct:   357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query:   414 QALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472
             QALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIIS
Sbjct:   417 QALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIIS 476

Query:   473 LSDVFRFLLGV 483
             LSDVF+FLLG+
Sbjct:   477 LSDVFQFLLGL 487

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   116 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 169

Query:   319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   170 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 220

Query:   379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 438
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   221 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 270

Query:   439 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   271 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 312

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

ZFIN|ZDB-GENE-060421-6938 zgc:136850 "zgc:136850" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 61/186 (32%), Positives = 86/186 (46%)

Query:   110 PNTISPETSGN-MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVT 168
             P T+ P T    ME + + M+  G  Q  +AD+       + F  +H  Y+ +P S K+ 
Sbjct:     4 PQTMDPLTEFPFMEDEGLTMKRTGPLQDPDADVY------AKFFMSHCCYDAIPTSSKLV 57

Query:   169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE-E 227
               D  L VK+AF  L   G+   PLWDD    FVG+L+  DFI IL       S L +  
Sbjct:    58 VFDTTLQVKKAFFALVANGVRAAPLWDDKLQCFVGMLTITDFINILHRYYK--SPLVQIY 115

Query:   228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPI 287
             ELE H I  W+   LQ ++              L+   P  SL E    +L+NK+  +P+
Sbjct:   116 ELEEHKIETWRETYLQYSVTS------------LISIAPDSSLFEAIYSLLKNKIHRLPV 163

Query:   288 IH-STG 292
             I   TG
Sbjct:   164 IDPETG 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   318 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 371

Query:   319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   372 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 422

Query:   379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 438
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   423 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 472

Query:   439 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   473 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 514

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 4.9e-28, Sum P(3) = 4.9e-28
 Identities = 64/225 (28%), Positives = 116/225 (51%)

Query:   259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   355 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFM 408

Query:   319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                     +++ +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   409 SEMPKPAFMKKNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 459

Query:   379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ-RCQMCL 437
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G  +C M  
Sbjct:   460 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEGVVKCSML- 510

Query:   438 RSDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
               + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 --ETLETIVDRIVKAEVHRLVVVNEADS--IVGIISLSDILQALV 551

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 8.5e-28, Sum P(3) = 8.5e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   356 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 409

Query:   319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   410 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 460

Query:   379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 438
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   461 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 510

Query:   439 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|Q9UGJ0 PRKAG2 "5'-AMP-activated protein kinase subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   359 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 412

Query:   319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   413 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 463

Query:   379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 438
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   464 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNK 513

Query:   439 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 481
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   514 LEILETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IMP

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IMP

GO:0008607 "phosphorylase kinase regulator activity" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IDA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0046324 "regulation of glucose import" evidence=TAS

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0016126 "sterol biosynthetic process" evidence=TAS

GO:0019217 "regulation of fatty acid metabolic process" evidence=IMP

DICTYBASE|DDB_G0272542 prkag "AMP-activated protein kinase gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 57/183 (31%), Positives = 93/183 (50%)

Query:   300 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 359
             IL++ + S IL  + + F      L  L  P+ S+ +GT+   +      P         
Sbjct:   404 ILHILTHSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP--------- 452

Query:   360 LGSALALLVQADVSSIPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418
             L   L LL +  +S++PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L  
Sbjct:   453 LVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS- 510

Query:   419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478
                    L    ++   C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  
Sbjct:   511 ---TFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILN 566

Query:   479 FLL 481
             +LL
Sbjct:   567 YLL 569

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1P1P1 PRKAG3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 58/224 (25%), Positives = 116/224 (51%)

Query:   259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +PLV   P DSL +    ++++K+  +P+I     +G+   +L++ +   ILK +  H  
Sbjct:   175 KPLVYISPSDSLFDAVYSLIKHKIHRLPVIEPI--SGN---VLHILTHKRILKFL--HIF 227

Query:   319 HSSSSLP-ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
              S+   P  L++ V  + +GT+         R  A++   A + +AL + V   VS++P+
Sbjct:   228 GSTIPKPRFLKKTVQELCVGTF---------RDVAVVPENAPVYAALEIFVDRRVSALPV 278

Query:   378 VDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL 437
             V+    ++ +YSR D+  LA  K Y  +   ++++ +AL+       ++   G     C 
Sbjct:   279 VNAAGQVVGLYSRFDVIHLAAQKTYNNL---DISVREALR-----QRTVCLEG--VLTCY 328

Query:   438 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
               + +  +++R+A   V RLV+V+  ++   GI+SLSD+ + L+
Sbjct:   329 PHETMEDIIDRIAEEQVHRLVLVDE-NRYPRGIVSLSDILQALV 371

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

CGD|CAL0001497 SNF4 [Candida albicans (taxid:5476)]

 Score = 152 (58.6 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
 Identities = 57/217 (26%), Positives = 102/217 (47%)

Query:   266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 325
             P+ SL E  +K+L++K   +P+I         + ++ + +   ILK +  + K +     
Sbjct:   141 PFKSLYEACVKMLESKARRIPLIDEDEKTKR-EIVVSVLTQYRILKFVALNCKETK---- 195

Query:   326 ILQQPVSSIQ-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 384
             +L +P+ ++  LG  V ++         M  P   +   + LL +  VSSIPIVD    L
Sbjct:   196 MLLKPLKNLSGLGD-VKKLSTCT-----MDTPVIEV---IHLLTENSVSSIPIVDGQGKL 246

Query:   385 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 444
             +++Y   DI AL K   Y  +   ++++  AL        S  F G     C  +D L  
Sbjct:   247 INVYEAVDILALVKGGMYTDL---DLSVGDAL-----LRRSEEFEG--VHTCTLNDRLST 296

Query:   445 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
             +M+ +    + RL +V+   K V  +I+LSD+  ++L
Sbjct:   297 IMDTIRKSRLHRLFVVDDEGKLVS-VITLSDILNYIL 332

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005641 "nuclear envelope lumen" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.7291	0.9917	0.9835	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	483
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	7e-37
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-27
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	3e-20
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-07
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	3e-07
cd02688	82	cd02688, E_set, Early set domain associated with t	9e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	9e-06
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-05
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	1e-05
pfam00571	57	pfam00571, CBS, CBS domain	2e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	4e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	5e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	9e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	5e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	6e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	8e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.001
pfam00571	57	pfam00571, CBS, CBS domain	0.002
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.002
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.003
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	0.004
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.004

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  131 bits (332), Expect = 7e-37
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 17/134 (12%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
           +  A  RP   L   L +LV+  VS++PIVD+N  ++D+YSR D+  LAK+ AY  + L 
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 409 EMNIHQALQLGQDANPSLGFNG-QRCQ--MCLRSDPLHKVMERLANPGVRRLVIVEAGSK 465
                +AL+          F G + C    CLR+     V  R     V RLV+V+   K
Sbjct: 61  VG---EALERRSQ-----DFEGVRTCSPDDCLRTIFDLIVKAR-----VHRLVVVDEN-K 106

Query: 466 RVEGIISLSDVFRF 479
           RVEGIISLSD+ +F
Sbjct: 107 RVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score =  104 bits (261), Expect = 2e-27
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 22 PVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
          PV F WP  GG+ V ++GSF  W +P+P+  S      F     LPPG ++YKF VDGEW
Sbjct: 1  PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDG--EFSATVELPPGRYEYKFIVDGEW 58

Query: 81 RHDENQPHVSGNYGVVN 97
           HD + P V+  +G +N
Sbjct: 59 VHDPDLPTVTDEFGNLN 75

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 224
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 284
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 285 VPIIHSTGPAGSCQEILYLASLSDILK 311
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 407
           R    + P  ++  AL L+++  +S +P+VDD+  L+ I +  D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 408 DEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 467
            ++     + +  D                    L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVVTVSPD------------------TSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 468 EGIISLSDVFRF 479
            GI++ SD+ R 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           R +V   P D++ E    +L++ ++ +P++   G       ++ + +  D+L+ +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG------RLVGIVTERDLLRALAEGGL 54

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                                   +G+   R    + P  SL  A  L+++  +  +P+V
Sbjct: 55  DPL-------------------VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 379 DDNDSLLDIYSRSDI 393
           DD   L+ I +RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
               + P  +L  AL LL +  +  +P+VD+   L+ I +R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 21 VPVRFIWPN--GGRRVSLSGSFTRWS-EPMPMSPS-EGCPAVFQIICRLPPG-HHQYKFY 75
            V F  P   G   VSL G F  W  +  PM     G    F     LP G  +Q+++ 
Sbjct: 1  CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKNG---TFSATLDLPAGREYQFRYL 57

Query: 76 VDGE-WRHDENQP-HVSGNYGVVNCV 99
          +DGE W +D     +    +G  N V
Sbjct: 58 IDGERWVNDPEADAYAPNGFGEENSV 83

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 22 PVRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDG 78
           V F I+  G + V L GSF  W +   +PM+ + G   V+     LP G ++YK+ +DG
Sbjct: 1  GVTFRIFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDG 58

Query: 79 EWRHDE 84
                
Sbjct: 59 GKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 356 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 415
              ++   LAL+        P+VDD   L+ I + +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 416 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 475
                 A+P               + L   ++R+A   + RL +V+  S R+ GI+S SD
Sbjct: 66  PVT---ASPD--------------ETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 476 VFRF 479
           + R 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 27/133 (20%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 407
           +P   L P A+L  A  L     +   P+VDD   L+ I + SDI  A+A+    A++  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVK- 58

Query: 408 DEM--NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 465
           D M  ++        D +  L             D +  + +      V RL++ +   +
Sbjct: 59  DVMTKDVITI-----DEDEQL------------YDAIRLMNKH----NVGRLIVTDDEGR 97

Query: 466 RVEGIISLSDVFR 478
            V GII+ +D+ R
Sbjct: 98  PV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 355 RPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIH 413
           RP A++  A  L+ + ++ ++ +VDD   L+ I+S  DI   +A   A A     +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA----LDTPVS 62

Query: 414 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 473
           + +      N                D + + M  +     R L +V+ G  ++ GI+S+
Sbjct: 63  EIMT----RNV---------ITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 474 SDVFRF 479
            DV + 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
           +    ++P  S+  AL L+ +  VS++P+VDD   L+ I +  DI           + + 
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVK 65

Query: 409 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA-NPGVRRLVIVEAGSKRV 467
           E+     + +  D                   PL + +E +     +RRL +V+    ++
Sbjct: 66  EVMTKPVVTVDPD------------------TPLEEALELMVERHKIRRLPVVDDDGGKL 107

Query: 468 EGIISLSDVF 477
            GII+LSD+ 
Sbjct: 108 VGIITLSDIL 117

Length = 117

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
                + P  SL  AL L+ +  +S +P+VD++  L+ I +  D+
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 412
           L  T  L  A   L+++   S  +VD +  ++ I +  D+  AL  D+A     +DE+  
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVAT 65

Query: 413 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK-RVEGII 471
              L +  D                  +PL   ++R+A+ G+R+L +V+ G+  +V G++
Sbjct: 66  PPLLTVHPD------------------EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLL 107

Query: 472 SLSDV 476
           +  +V
Sbjct: 108 TRENV 112

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 352 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE 409
             + P  ++  A  L+ + DV ++P+ + ND L+ I +  DI   A+A+ +      + +
Sbjct: 4   VTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGD 62

Query: 410 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 469
           +     +                       D + +    +    VRRL +V+    R+ G
Sbjct: 63  VMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVG 103

Query: 470 IISLSDV 476
           I+SL D+
Sbjct: 104 IVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           + ++   P  ++ E A  + +N +  + ++ +  P G   E        D++K      K
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITE-------RDLVK------K 47

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
             S +L   + PV            GE    P   + P ASL  A  L+ +  +  +P+V
Sbjct: 48  VVSRNLKPREVPV------------GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95

Query: 379 DDNDSLLDIYSRSDIT 394
           DD D L+ I + +DI 
Sbjct: 96  DD-DELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 406
           RP     P  ++  A  L+ +  VSS+ +V D+  L+ I +  D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDPDTP- 58

Query: 407 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 466
           + E+     + +  DA                 + L  ++ER    G+  L +V+ G  R
Sbjct: 59  VSEVMTAPPITIPPDA--------------TVFEALLLMLER----GIHHLPVVDDG--R 98

Query: 467 VEGIISLSDVFRF 479
           + G+IS +D+ R 
Sbjct: 99  LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 438 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
            +  L + +E L + G+ R+ + E  S  V GI+S   +  FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 363 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 422
           A  L+ + ++S +P+VD+   L+   S SD+  L          L    I          
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL---LLSPDDLLLYRTITFKELSE--K 69

Query: 423 NPSLGFNGQRCQM-CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479
                    R  + C  S  L +V+ +L    V R+ +V+   K   G+I+L+D+   
Sbjct: 70  FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           + P A++  AL L+ +  +S +P+VDD+  L+ I +  D+
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 225
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 285
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 286 PIIHSTGPAGSCQEILYLASLSDILK 311
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH--FKH 319
           V   P   + E A  +++N    +P++          +++ + + +DILK +     F  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDE-----GTGKLVGIITATDILKYLGGGEKFNK 58

Query: 320 SSS--SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
             +   L  + +PV SI              R    + P  S+  A  L+++  V  +P+
Sbjct: 59  IKTGNGLEAINEPVRSIMT------------RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 378 VDDNDSLLDIYSRSDI 393
           VDD+  L+ I +  D+
Sbjct: 107 VDDDGKLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 439 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482
              L + +E +   G+ RL +V     ++ GI++L D+ R LL 
Sbjct: 15  DTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
                  P  SL  A + + +  +SSI +V D+   L I +  DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 409 EMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV-EAGSKR 466
                  L  G D    +G               L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 467 VEGIISLSDVFR 478
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
             +G+   R      P  +L  AL  + + D+  +P+VDD+  L+ I SRSD+
Sbjct: 56  VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 31/120 (25%)

Query: 362 SALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421
             L LL +  VS +P+V  +  L+ I +R D+            + +E  +  AL + +D
Sbjct: 14  DVLELLKEYKVSGVPVVKKSGELVGIITRKDLL----------RNPEEEQL--ALLMTRD 61

Query: 422 ---ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478
               +P               D + +  + +    +RR+ +V+    ++ GI++++D+ R
Sbjct: 62  PPTVSPD--------------DDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
                + P   +  A  L+++A++S +P+V DND+++ + +++DI
Sbjct: 89  EEIITVSPNDDVVDAAKLMLEANISGLPVV-DNDNIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	483
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.92
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.78
COG2524	294	Predicted transcriptional regulator, contains C-te	99.74
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.68
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.63
COG2524	294	Predicted transcriptional regulator, contains C-te	99.62
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.62
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.61
COG3620	187	Predicted transcriptional regulator with C-termina	99.59
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.55
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.55
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.55
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.51
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.51
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.51
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.5
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.49
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.49
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.48
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.48
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.47
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.46
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.46
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.46
COG2905	610	Predicted signal-transduction protein containing c	99.46
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.45
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.45
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.44
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.44
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.44
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.44
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.44
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.44
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.43
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.43
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.43
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.43
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.43
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.43
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.43
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.43
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.43
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.42
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.42
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.42
COG3620	187	Predicted transcriptional regulator with C-termina	99.42
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.41
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.41
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.41
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.41
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.4
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.4
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.4
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.4
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.4
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.4
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.4
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.4
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.4
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.39
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.39
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.39
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.39
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.39
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.39
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.38
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.38
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.38
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.38
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.38
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.37
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.36
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.36
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.35
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.35
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.35
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.35
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.35
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.35
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.34
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.33
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.33
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.32
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.32
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.32
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.32
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.32
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.31
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.31
COG0517	117	FOG: CBS domain [General function prediction only]	99.31
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.31
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.31
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.3
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.3
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.3
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.3
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.3
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.3
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.29
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.29
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.29
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.29
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.28
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.28
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.28
COG4109	432	Predicted transcriptional regulator containing CBS	99.27
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.27
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.27
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.27
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.27
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.27
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.27
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.25
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.25
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.25
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.25
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.25
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.25
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.24
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.24
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.24
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.24
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.23
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.23
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.23
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.23
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.23
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.23
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.22
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.22
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.22
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.22
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.22
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.21
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.21
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.21
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.21
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.2
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.2
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.2
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.2
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.2
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.18
COG0517	117	FOG: CBS domain [General function prediction only]	99.18
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.18
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.18
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.18
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.18
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.17
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.17
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.17
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.16
COG2905	610	Predicted signal-transduction protein containing c	99.16
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.16
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.14
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.14
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.14
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.13
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.13
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.13
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.12
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.12
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.11
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.11
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.1
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.1
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.1
PRK11573	413	hypothetical protein; Provisional	99.09
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.08
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.07
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.05
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.03
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.01
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.97
COG4109	432	Predicted transcriptional regulator containing CBS	98.96
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.92
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.92
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.9
PRK11573	413	hypothetical protein; Provisional	98.89
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.88
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.87
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.86
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.74
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.65
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.65
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.64
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.59
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.58
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.52
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.47
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.43
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.41
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.4
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.33
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.27
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.24
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.13
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.94
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.89
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.82
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.77
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.74
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.74
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.71
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.58
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.55
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.53
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.47
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.46
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.46
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.46
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.38
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.36
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.18
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.12
PRK12568	730	glycogen branching enzyme; Provisional	97.11
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.0
PRK12313	633	glycogen branching enzyme; Provisional	96.97
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.95
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.94
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.83
PRK14705	1224	glycogen branching enzyme; Provisional	96.76
PRK14706	639	glycogen branching enzyme; Provisional	96.74
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.74
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.73
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.71
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.68
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.62
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.59
PRK05402	726	glycogen branching enzyme; Provisional	96.53
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.48
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.41
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.25
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	96.04
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	95.86
PRK05402	726	glycogen branching enzyme; Provisional	95.76
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.4
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.03
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.15
PLN02316	1036	synthase/transferase	94.05
PLN02950	909	4-alpha-glucanotransferase	93.74
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	93.72
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	93.39
PLN02950	909	4-alpha-glucanotransferase	93.08
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	92.83
PLN02316	1036	synthase/transferase	92.68
PLN02960	897	alpha-amylase	89.91
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	89.32
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	89.0
PRK03705	658	glycogen debranching enzyme; Provisional	87.59
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	87.04
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	86.99
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	86.27
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	82.73
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	82.36
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	80.04

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=1.2e-35  Score=297.38  Aligned_cols=303  Identities=30%  Similarity=0.543  Sum_probs=257.9

Q ss_pred             HHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCC
Q 011558          144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  223 (483)
Q Consensus       144 ~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~  223 (483)
                      ....+..|++.++||+.+|.+++++++|..+++++||++|..++.+++|+||....+|+|++++.||+.++...+.....
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999998887764211


Q ss_pred             C-CHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 011558          224 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (483)
Q Consensus       224 l-~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~G  302 (483)
                      . ..+.++...+..|++......         ....++++.+.|..++.+++..+.+++++++||.|  .+.+   ++.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~  200 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY  200 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence            1 123344444555554422211         12345559999999999999999999999999995  4566   8999


Q ss_pred             EechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC
Q 011558          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  382 (483)
Q Consensus       303 iit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  382 (483)
                      ++|++.|++++..+.+..+ +..++..++.++.+|+|.         .+..+..++++.+|+++|..++++++||||++|
T Consensus       201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g  270 (381)
T KOG1764|consen  201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG  270 (381)
T ss_pred             ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence            9999999999988776654 467789999999999996         688999999999999999999999999999999


Q ss_pred             cEEEEEeHHHHHHHHhcccccccccCCcc-HHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEe
Q 011558          383 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  461 (483)
Q Consensus       383 ~lvGiit~~di~~l~~~~~~~~~~l~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd  461 (483)
                      ..+|+++..|+..+...+.|....   .+ +.+++....       .-..++++|.+++||.+++++|..+++||+||||
T Consensus       271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence            999999999999999888877653   45 777765533       2234689999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHHh
Q 011558          462 AGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       462 ~~~~~l~GiIs~~DIl~~l~  481 (483)
                       ++|+++|+||++||+.++.
T Consensus       341 -~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  341 -EDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             -CCCcEEEEeeHHHHHHHHH
Confidence             5899999999999999985

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.92  E-value=3.1e-25  Score=172.86  Aligned_cols=79  Identities=46%  Similarity=0.944  Sum_probs=74.2

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeeeE
Q 011558           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (483)
Q Consensus        20 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~   99 (483)
                      ++||+|+|+++|++|+|+|+|+||++..||.+..  ++ |+++++||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            4799999999999999999999999878999975  44 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 011558          100 YI  101 (483)
Q Consensus       100 ~~  101 (483)
                      |.
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            83

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.78  E-value=6.6e-19  Score=138.73  Aligned_cols=77  Identities=38%  Similarity=0.748  Sum_probs=69.5

Q ss_pred             eEEEEEecCC-CceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeee-eCCCCCe-eeCCCCCee
Q 011558           21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN   97 (483)
Q Consensus        21 ~~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~-~d~~~~~-~~~~~g~~n   97 (483)
                      +|++|+|.++ +++|+|+|+||+|+ ..+|.+.+  +|.|+++++|++|.|+|||+|||.|. +||.++. ..|++|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            5899999887 59999999999998 47998865  79999999999999999999999998 9998885 778899999


Q ss_pred             eEE
Q 011558           98 CVY  100 (483)
Q Consensus        98 n~~  100 (483)
                      |+|
T Consensus        79 ~v~   81 (82)
T cd02861          79 AVF   81 (82)
T ss_pred             eEc
Confidence            987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.74  E-value=2e-17  Score=150.80  Aligned_cols=123  Identities=18%  Similarity=0.373  Sum_probs=111.8

Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      ..+++++|++++.++.+++++.+|.++|.++++++.||+|+ ++++|++|.+|+..+++++.+      +..|++     
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~-----  238 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD-----  238 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH-----
Confidence            34678899999999999999999999999999999999995 599999999999998887643      356777     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhcC
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  483 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~~  483 (483)
                              +|.+.++++..++.+.||+++|..+++.||.|+| .+|+++|+||++|||+.+.+.
T Consensus       239 --------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~~  293 (294)
T COG2524         239 --------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAGL  293 (294)
T ss_pred             --------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhcc
Confidence                    7888999999999999999999999999999999 589999999999999998763

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.68  E-value=7.9e-17  Score=155.61  Aligned_cols=90  Identities=37%  Similarity=0.721  Sum_probs=83.2

Q ss_pred             cCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCC
Q 011558           16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV   95 (483)
Q Consensus        16 ~~~~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~   95 (483)
                      ......|++|+|..+++.|+|+|||.||...+++.+.....|.|..++.|++|.|+|||+|||+|++|++.|+++|..|+
T Consensus        75 ~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn  154 (289)
T KOG1616|consen   75 DREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGN  154 (289)
T ss_pred             ccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCC
Confidence            34568999999999999999999999999989998877556669999999999999999999999999999999999999


Q ss_pred             eeeEEEeccCC
Q 011558           96 VNCVYIAVPQP  106 (483)
Q Consensus        96 ~nn~~~v~~~~  106 (483)
                      .||++.| .+.
T Consensus       155 ~~N~i~v-~~~  164 (289)
T KOG1616|consen  155 LNNILEV-QDP  164 (289)
T ss_pred             cccceEe-cCc
Confidence            9999999 654

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=1.1e-14  Score=123.39  Aligned_cols=119  Identities=39%  Similarity=0.659  Sum_probs=95.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|++.+...+.....   ..++.+.+....       .|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence            56789999999999999999999999999989999999999999986543322111   123443221111       34


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++.++.+++++.+++++|.+++.+++||+| ++|+++|+||++|++++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence            45678999999999999999999999999999 46899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.62  E-value=2.7e-15  Score=136.97  Aligned_cols=116  Identities=20%  Similarity=0.344  Sum_probs=104.0

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      ..++++++++.+++|+.+|.+++.+++++..||+|+    +   +++|++|..||.+.+...                  
T Consensus       176 ~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g------------------  230 (294)
T COG2524         176 NLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG------------------  230 (294)
T ss_pred             hhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC------------------
Confidence            467899999999999999999999999999999964    3   799999999999988532                  


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                         ....+|.++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|++|+.|++..++
T Consensus       231 ---~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 ---NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ---CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence               2334667779999999999999999999999999999999999999999999999998554

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.62  E-value=7.9e-15  Score=136.15  Aligned_cols=173  Identities=17%  Similarity=0.269  Sum_probs=130.2

Q ss_pred             ceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHH-HHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHH
Q 011558          200 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  278 (483)
Q Consensus       200 ~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~-~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~  278 (483)
                      +-+| ++..|+-..|+.+.+.. .++.++++.+.-+. ++...+..+.-.|.|    +|+++++++.+++++.+|.++|.
T Consensus       199 ~rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~Ltcad----IMSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         199 QRVG-FSSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELTCAD----IMSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             hccC-CCHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhccccHHH----hcCccceecCCcCChHHHHHHHH
Confidence            4456 68899998888775432 34567776654332 222222222223333    69999999999999999999999


Q ss_pred             hCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCC
Q 011558          279 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA  358 (483)
Q Consensus       279 ~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~  358 (483)
                      +++++.+||+|+   +.   +++|++|++|+++....          ..-+.++.+    ..++++.+|+.++.++.+++
T Consensus       273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~----------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt  332 (382)
T COG3448         273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARP----------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT  332 (382)
T ss_pred             HcCccccccccc---cc---ceeeeeeHHHHhhccCc----------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence            999999999964   33   89999999998873311          011222211    23477888999999999999


Q ss_pred             CHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       359 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      +..+.+-++.+.+.+++||+|++|+++||+|..|++..+.
T Consensus       333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            9999999999999999999999999999999999988543

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.61  E-value=2.8e-15  Score=139.08  Aligned_cols=128  Identities=18%  Similarity=0.355  Sum_probs=108.2

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      ...++|+++++++..++++.+|.++|.++++.++||+|++.+++|+++++|+.+-.....+.++           +..+ 
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrl-----------r~~~-  313 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRL-----------RFLR-  313 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHh-----------hccC-
Confidence            4567899999999999999999999999999999999999999999999999885443332222           1111 


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ++...++|+.++.++.++++..+.+-+|.+.+.|.+||+| +.|+++||||.+|++.++..
T Consensus       314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHHH
Confidence            1112238999999999999999999999999999999999 58999999999999998753

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.59  E-value=1.1e-14  Score=123.34  Aligned_cols=119  Identities=18%  Similarity=0.389  Sum_probs=101.1

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  422 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~  422 (483)
                      ...+|..+++.+.+++++.+|+++|..++++.+||+++ ++++|-||..+|.++..++.   ..+....+.+        
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~--------  134 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVRE--------  134 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHH--------
Confidence            45569999999999999999999999999999999985 99999999999999765442   1222456666        


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                           +|..++++++++.++..+-.++..++.  +.|++  +|+++||||..||++++.+
T Consensus       135 -----vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         135 -----VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             -----HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence                 788899999999999988888877764  77886  6999999999999999865

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=5.1e-14  Score=115.02  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=84.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      .+.++.+++++.+|.++|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            46789999999999999999999999999974 89999999999876211                              


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF  479 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~-~~l~GiIs~~DIl~~  479 (483)
                          +.++.+++++.+|+++|.+++++++||+| ++ |+++|+||.+||+++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF   98 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence                45799999999999999999999999999 45 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.55  E-value=8.4e-14  Score=116.28  Aligned_cols=110  Identities=12%  Similarity=0.269  Sum_probs=92.0

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++...+ ..     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence            35678999999999999998999999999988999999999999874221 11     1133444             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~  111 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF  111 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence            55678999999999999999999999999999 46999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.4e-13  Score=115.52  Aligned_cols=111  Identities=16%  Similarity=0.301  Sum_probs=93.4

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC
Q 011558          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  430 (483)
Q Consensus       351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~  430 (483)
                      +.++.+++++.+|++.|.+.+...+||+|++|+++|+++.+|+.+.........   .+.++.+             +|.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~---~~~~v~~-------------~~~   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPG---CTAPVEN-------------VMT   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCc---ccCCHHH-------------Hhc
Confidence            567899999999999999999999999999999999999999987554211111   1245665             455


Q ss_pred             CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       431 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK  113 (114)
T ss_pred             CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence            5788999999999999999999999999999 4689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.51  E-value=1.7e-13  Score=136.99  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=103.3

Q ss_pred             cccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          341 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       341 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      .+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++....+.    .+.+.++.+    
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~----  273 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD----  273 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence            367888987  8999999999999999999988888888998999999999999987554321    112345666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                               +|..++.++.+++++.+|+++|.+++++++||+|  +++++|+||++||+++
T Consensus       274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence                     6777889999999999999999999999999998  4899999999999975

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=3.5e-13  Score=113.75  Aligned_cols=112  Identities=21%  Similarity=0.311  Sum_probs=92.4

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.+|++.|..++.+++||+|++|+++|+++..|+++......    .....++.+             +|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~   64 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM   64 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence            5678999999999999999899999999998899999999999988554221    111244555             33


Q ss_pred             CC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEehHHHHH
Q 011558          430 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~--~~l~GiIs~~DIl~  478 (483)
                      ..  .+.++.+++++.+++++|.+++++++||||+++  |+++|+||++||++
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            32  578999999999999999999999999999422  69999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.51  E-value=4.2e-13  Score=112.53  Aligned_cols=112  Identities=20%  Similarity=0.343  Sum_probs=93.4

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++...+.....    ..++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~----~~~~~~-------------~~   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE----PSAVDE-------------VA   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccc----cccHHH-------------hc
Confidence            4567899999999999999999999999999999999999999998654321110    123444             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~--~~l~GiIs~~DIl~~  479 (483)
                      ..++.+|.+++++.+++++|.+++.+++||+|+ +  |+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence            557889999999999999999999999999994 5  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=4.3e-13  Score=112.38  Aligned_cols=112  Identities=21%  Similarity=0.257  Sum_probs=93.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+......   ..+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD---PDRVNVYE-------------I   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC---CCccCHHH-------------H
Confidence            46789999999999999999999999999987 8999999999998844322111   11245555             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      |..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||+.||+++
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA  114 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence            555788999999999999999999999999999 4 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=1.9e-13  Score=111.64  Aligned_cols=97  Identities=45%  Similarity=0.748  Sum_probs=85.3

Q ss_pred             ccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHhhh
Q 011558          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (483)
Q Consensus       165 ~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (483)
                      +++++++.+.|+.+|++.|.++++.++||+|+++++++|++|..|+...+.                             
T Consensus         1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-----------------------------   51 (98)
T cd04618           1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-----------------------------   51 (98)
T ss_pred             CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence            378999999999999999999999999999976678999999999864221                             


Q ss_pred             hccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (483)
Q Consensus       245 ~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~  311 (483)
                                      ++++.+++++.+|+++|.+++++++||+++  .+|   +++|++|.+||++
T Consensus        52 ----------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~   97 (98)
T cd04618          52 ----------------LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK   97 (98)
T ss_pred             ----------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence                            567899999999999999999999999964  235   8999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.49  E-value=1.6e-13  Score=117.13  Aligned_cols=113  Identities=14%  Similarity=0.225  Sum_probs=93.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++....+... .   +.++.+             +|
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~---~~~v~~-------------im   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-P---SDPVSK-------------AL   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-C---CCcHHH-------------Hh
Confidence            577899999999999999999999999999889999999999998754432211 1   356666             66


Q ss_pred             CCcceEEeCCCCHHHHHHHHH---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~---------~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                      .+++.++.+++++.++.++|.         +.+.+++||+| ++|+++|+||.+||++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence            678899999999999999653         34678888998 579999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.49  E-value=6e-13  Score=113.05  Aligned_cols=117  Identities=21%  Similarity=0.370  Sum_probs=94.9

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc------ccCCccHHHHHhcCCCC
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA  422 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~------~l~~~~v~~~l~~~~~~  422 (483)
                      +++.++.+++++.++.+.|.+.+++++||++++|+++|+++..|++...........      .....++.+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--------   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD--------   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence            467889999999999999999999999999988999999999999875542221000      001123333        


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                           +|..++.++.+++++.+++++|.+.+.+++||+| ++|+++|+||.+|++++
T Consensus        74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~  124 (124)
T cd04600          74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence                 5666788999999999999999999999999999 47999999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.48  E-value=4.1e-13  Score=133.97  Aligned_cols=120  Identities=13%  Similarity=0.182  Sum_probs=103.6

Q ss_pred             cccccccCCC--eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          341 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       341 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      .+|+++|.++  +.++++++++.+|.+.|.+.+...+||+|++|+++|+++..|+.+....+...     +.++.+    
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~----  267 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE----  267 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence            3678889998  99999999999999999988889999999999999999999998855432111     234555    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                               +|.+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||+.||+++
T Consensus       268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence                     6666788999999999999999999999999999 47899999999999975

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.2e-12  Score=108.93  Aligned_cols=112  Identities=21%  Similarity=0.404  Sum_probs=93.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+++.+.......   ...++.+             +|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence            4667899999999999999999999999998899999999999988554321110   1235555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||.+||+++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence            55788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=5.3e-13  Score=108.53  Aligned_cols=95  Identities=16%  Similarity=0.368  Sum_probs=85.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            567899999999999999999999999999899999999999987621                                


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                        .+.++.+++++.+++++|.+++.+++||+| ++|+++|+||.+||+++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence              145789999999999999999999999999 46899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.4e-12  Score=110.46  Aligned_cols=116  Identities=19%  Similarity=0.323  Sum_probs=94.2

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-----ccCCccHHHHHhcCCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP  424 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~-----~l~~~~v~~~l~~~~~~~~  424 (483)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++++..........     .....++.+          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence            46788999999999999999999999999988999999999999885542211100     001234444          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                         +|..++.++.+++++.+++++|.+.+.+.+||+| ++|+++|+||..|++++
T Consensus        72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL  122 (122)
T ss_pred             ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence               4555788999999999999999999999999999 46899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=8.7e-13  Score=112.69  Aligned_cols=121  Identities=21%  Similarity=0.327  Sum_probs=92.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHH---HHHhcCCCCCCCc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL  426 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~---~~l~~~~~~~~~~  426 (483)
                      .+.++.+++++.+|++.|.+++++++||+|++|+++|+++..|+++....+.....    .+..   .......   ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~   74 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----YRTITFKELSEKFT---DSD   74 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhhhhcc---ccc
Confidence            46789999999999999999999999999989999999999999886542211100    0000   0000000   001


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          427 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       427 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..|..++.++.+++++.+|+++|.+++.+++||+| ++++++|+||.+||++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence            14556788999999999999999999999999999 4699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.46  E-value=2.5e-12  Score=106.74  Aligned_cols=108  Identities=20%  Similarity=0.430  Sum_probs=92.5

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      +++.++.++.++.++++.|.+++.+.+||+|++|+++|+++..++++......        .++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence            35778999999999999999999999999998899999999999987554221        12444             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      |..++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||+.||++
T Consensus        61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~  109 (110)
T cd04605          61 MTRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK  109 (110)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence            445788999999999999999999999999999 4799999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.46  E-value=4.1e-13  Score=135.50  Aligned_cols=121  Identities=25%  Similarity=0.382  Sum_probs=107.0

Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH-hcccccccccCCccHHHHHhcC
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA-KDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~-~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      .++++++..+++++++.+++.+|...|.+.+++++.++++++..+||+|++|++... .++...     +.+|++     
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-----~~~V~e-----  218 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-----TQKVSE-----  218 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-----ccchhh-----
Confidence            467788999999999999999999999999999999999999999999999999844 333221     245555     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                              +|+.++++++.++.+.+|+-+|.+++++||||++  +|+++|+||.+||++.+.
T Consensus       219 --------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         219 --------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --------hhccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence                    8889999999999999999999999999999998  599999999999999875

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.45  E-value=2.3e-12  Score=107.66  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC
Q 011558          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  430 (483)
Q Consensus       351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~  430 (483)
                      +.++.+++++.++++.|.+.+.+.++|+|++|+++|+++.+|+++....+...     +.++.+             +|.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~~   65 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VMN   65 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hhc
Confidence            56789999999999999988999999999899999999999998755432111     234555             444


Q ss_pred             CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       431 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..+.++.+++++.+++++|.+++.+++||+| ++|+++|+||.+||+.
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  112 (113)
T cd04607          66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence            5678999999999999999999999999999 4799999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.45  E-value=1.9e-12  Score=106.70  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+++...           .++.+             +|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence            4668899999999999999889999999998899999999999986421           12333             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ...+.++.+++++.++++.|.+++...+||+| ++++++|+||.+|+++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence            44567899999999999999999999999999 5789999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=3.1e-12  Score=106.52  Aligned_cols=110  Identities=18%  Similarity=0.355  Sum_probs=93.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+..+...     +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence            466789999999999999999999999999889999999999998865533211     234554             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.+++++|.+++...+||+| ++|+++|++|.+|+++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence            55788999999999999999999999999999 4799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.8e-12  Score=107.85  Aligned_cols=109  Identities=21%  Similarity=0.376  Sum_probs=92.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+.......      +.++.+             +|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence            45678999999999999988889999999988999999999999886543211      234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+|+.+
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~  110 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE  110 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence            45688999999999999999999999999999 4689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.7e-12  Score=110.37  Aligned_cols=119  Identities=20%  Similarity=0.293  Sum_probs=90.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +......+..       ..+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence            56788999999999999998899999999987 99999999999988553221100000 0000000000       014


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  477 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl  477 (483)
                      |..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence            566788999999999999999999999999999 468999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.6e-12  Score=110.50  Aligned_cols=116  Identities=17%  Similarity=0.289  Sum_probs=93.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccc-c------ccCCccHHHHHhcCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD  421 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~-~------~l~~~~v~~~l~~~~~  421 (483)
                      ++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|++....+..... .      .....++.+       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS-------   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence            46788999999999999999999999999987 99999999999998654322110 0      000123333       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                            +|..++++|.+++++.++++.|.+.+.+.++|+| ++|+++|+||..||+++
T Consensus        75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~  125 (125)
T cd04631          75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA  125 (125)
T ss_pred             ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence                  4555788999999999999999999999999999 46899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.7e-12  Score=106.85  Aligned_cols=109  Identities=17%  Similarity=0.332  Sum_probs=92.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++.+......     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence            46678999999999999999999999999988999999999999875442211     1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.+|++.|.+++.+++||+| + |+++|+||+.||++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            45788999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.44  E-value=1.4e-12  Score=109.15  Aligned_cols=111  Identities=22%  Similarity=0.348  Sum_probs=89.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++..|+++.......      +.++.+++...         
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~~~~~~---------   66 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQVMTPA---------   66 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhhhhccc---------
Confidence            4678899999999999997665 8899999988999999999999886542211      23455532210         


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                        .++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++
T Consensus        67 --~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~  113 (114)
T cd04801          67 --AKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR  113 (114)
T ss_pred             --ccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence              1356899999999999999999999999999 4689999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.7e-12  Score=108.37  Aligned_cols=113  Identities=20%  Similarity=0.293  Sum_probs=92.9

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++.+....+...  .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~--~~~~v~~-------------~~   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCD--GVATVRD-------------IM   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccC--CCccHHH-------------Hh
Confidence            46678999999999999998888999999988999999999999875543221110  1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||.+||+++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence            45678899999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.3e-12  Score=108.98  Aligned_cols=118  Identities=22%  Similarity=0.294  Sum_probs=92.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++++||+++   +|   +++|+++.+|+++++......      ....++.+.    .
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----~   65 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----L   65 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----H
Confidence            5789999999999999999999999999954   45   899999999999765322110      001111110    0


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus        66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence              112335567889999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.7e-12  Score=107.53  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=90.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-ccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~-~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      .++++..++++.++++.|.+.+++.+||+|++|+++|+++..|+++.......... .+.+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~   68 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V   68 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence            46789999999999999999999999999988999999999999886543211110 001234454             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      |..++.++.+++++.+|++.|.+.+  .+||+| ++|+++|+||..|++++
T Consensus        69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA  116 (116)
T ss_pred             hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence            5556889999999999999998865  599999 57999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.3e-12  Score=106.55  Aligned_cols=110  Identities=20%  Similarity=0.352  Sum_probs=91.8

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC
Q 011558          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  430 (483)
Q Consensus       351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~  430 (483)
                      +..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.......    +.+.++.+             +|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~~   65 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VMN   65 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hcc
Confidence            5678999999999999999999999999988999999999999874332211    11234555             455


Q ss_pred             CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       431 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      .++.++..++++.++++.|.+++.+++||+| ++|+++|+||..||++
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          66 SPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR  112 (113)
T ss_pred             CCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence            5788999999999999999999999999999 4789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.1e-12  Score=110.89  Aligned_cols=114  Identities=15%  Similarity=0.234  Sum_probs=92.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-------------------ccCCc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-------------------HLDEM  410 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~-------------------~l~~~  410 (483)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++..........                   ...+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            45678999999999999999999999999999999999999999986542211100                   00012


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       411 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ++.+             +|..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||.+||++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~  134 (135)
T cd04621          82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICR  134 (135)
T ss_pred             cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhh
Confidence            3333             5666788999999999999999999999999999 4 89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.43  E-value=2.1e-12  Score=126.25  Aligned_cols=120  Identities=13%  Similarity=0.361  Sum_probs=100.6

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +|+++|.+  ++.++..++++.++++.+.+++++++||++++ ++++|+++.+|++........      ...+.+    
T Consensus        68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~----  137 (292)
T PRK15094         68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK----  137 (292)
T ss_pred             EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence            45666987  69999999999999999999999999999875 789999999999864431111      123444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|. +++++.+++++.++++.|.+++.+.++|+| +.|.++|+||+.||++.++|
T Consensus       138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence                     333 355899999999999999999999999999 57999999999999999986

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.43  E-value=1.7e-12  Score=134.33  Aligned_cols=116  Identities=15%  Similarity=0.231  Sum_probs=101.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      ++.++|.++++++.+++++.+++++|.+++++.+||+|++++++|+++.+|+....       .   ..++.+       
T Consensus        90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------~---~~~V~d-------  152 (479)
T PRK07807         90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------R---FTQVRD-------  152 (479)
T ss_pred             ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-------c---CCCHHH-------
Confidence            34566889999999999999999999999999999999999999999999985421       0   134555       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|..+++++.+++++.+|+++|.+++++++|||| ++++++|+||.+||++...
T Consensus       153 ------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        153 ------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             ------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence                  6667899999999999999999999999999999 4799999999999998754

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.2e-12  Score=109.41  Aligned_cols=116  Identities=23%  Similarity=0.395  Sum_probs=92.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc--------ccCCccHHHHHhcCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI--------HLDEMNIHQALQLGQ  420 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~--------~l~~~~v~~~l~~~~  420 (483)
                      ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+++..|+..++....+ ...        ...+.++.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence            45678999999999999999999999999988999999999999875432111 000        000122333      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeC-CCCeEEEEEehHHHHH
Q 011558          421 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFR  478 (483)
Q Consensus       421 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~-~~~~l~GiIs~~DIl~  478 (483)
                             +|..+++++.+++++.+++++|.+.+.+.+||++. ++|+++|+||.+||++
T Consensus        76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence                   56667889999999999999999999999999851 4699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.9e-12  Score=110.39  Aligned_cols=126  Identities=16%  Similarity=0.270  Sum_probs=92.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc--cCCccH--HHHHhcCCCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH--LDEMNI--HQALQLGQDANPS  425 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~--l~~~~v--~~~l~~~~~~~~~  425 (483)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+.+...........  ......  .+..+..  ...+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   79 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL--LGKK   79 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH--cCCC
Confidence            467899999999999999988999999999889999999999998865422110000  000000  0000000  0001


Q ss_pred             c-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          426 L-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       426 ~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      . ++|.+++..+.+++++.+++++|.+.+.+++||+| + |+++|+||.+|++++
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            1 15666788999999999999999999999999999 4 999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.42  E-value=2.3e-12  Score=106.76  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=91.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..+++....          +.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence            5678999999999999999999999999999999999999999975210          245565             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.+++++|.+++.+.+||+| ++|+++|+||..|+++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence            44678999999999999999999999999999 5799999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.2e-12  Score=109.23  Aligned_cols=116  Identities=16%  Similarity=0.294  Sum_probs=92.4

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-cccc----ccCCccHHHHHhcCCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQI----HLDEMNIHQALQLGQDANP  424 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~-~~~~----~l~~~~v~~~l~~~~~~~~  424 (483)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++...... ....    .....++.+          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence            4678999999999999999999999999998899999999999987421110 0000    001223333          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                         +|..++.++.+++++.++++.|.+++.+++||+| ++|+++|++|+.|++++
T Consensus        72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence               4555788999999999999999999999999999 47999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=3.8e-12  Score=106.13  Aligned_cols=111  Identities=20%  Similarity=0.346  Sum_probs=93.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+........    ...++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~----~~~~v~~-------------~~   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY----DLVVASD-------------IM   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc----ccEEHHH-------------hc
Confidence            467899999999999999998999999999889999999999998765432111    1245555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCC-CCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~-~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|...+.+++||+| + .++++|+|+..|+++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence            56788999999999999999999999999998 4 589999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.42  E-value=1.3e-12  Score=110.76  Aligned_cols=116  Identities=23%  Similarity=0.452  Sum_probs=98.6

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      .+|..+++++.|++++.+|+++|.+++++.+||+++    +   +++|-+|.++|.+.+.+..           ..++++
T Consensus        69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~~~  130 (187)
T COG3620          69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIRSL  130 (187)
T ss_pred             hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchhhh
Confidence            478999999999999999999999999999999954    3   8999999999999875432           122222


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                             +++++|..+++++++++++..+-+++..+  .++.|+ ++|+++|+||+.|++++..
T Consensus       131 -------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         131 -------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             -------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence                   56778999999999999999888888654  578888 5899999999999999765

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.41  E-value=5.8e-12  Score=104.52  Aligned_cols=108  Identities=24%  Similarity=0.373  Sum_probs=91.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..++++.++++.|.+.+++++||+++ |+++|+++..|+++....+..      ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence            5678899999999999999999999999998 999999999999886543211      134555             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence            45688999999999999999999999999999 4689999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.41  E-value=6.4e-12  Score=104.53  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=91.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      +++++..+.++.++++.|.+.+...++|+|+ |+++|+++..|++.....+...    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence            4567899999999999999889999999997 8999999999998755432111    1244555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++..+.+++++.++++.|.+++.+.+||+| + ++++|+||..|+++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence            45688999999999999999999999999999 3 899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.41  E-value=6.8e-12  Score=103.80  Aligned_cols=106  Identities=19%  Similarity=0.305  Sum_probs=90.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++..+.++.++.++++.|.+.+...+||+|++|+++|+++..|++......         .++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~---------~~v~~-------------~~   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA---------KSLED-------------IM   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC---------CcHhH-------------hh
Confidence            466789999999999999999999999999889999999999998744211         23444             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ...+.++.+++++.++++.|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence            45678899999999999999999999999999 4789999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.41  E-value=6.6e-12  Score=104.37  Aligned_cols=108  Identities=16%  Similarity=0.359  Sum_probs=90.9

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++.+++++.+|++.|.+.+.+.+||++++ |+++|+++..|+++.......      ..++..             +
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence            46789999999999999999899999999988 999999999999986653221      023333             2


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      + .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus        63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE  110 (111)
T ss_pred             h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence            2 2577899999999999999999999999999 4799999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.40  E-value=2.9e-12  Score=110.83  Aligned_cols=116  Identities=22%  Similarity=0.372  Sum_probs=93.1

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc------cc------------ccCCc
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QI------------HLDEM  410 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~------~~------------~l~~~  410 (483)
                      +++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..|+.+........      ..            .....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            3577899999999999999999999999999889999999999998754322100      00            00012


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       411 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ++.+             +|..++.++.+++++.++++.|.+.+.+++||+|  +|+++|+||+.|++++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~  135 (135)
T cd04586          82 KVAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA  135 (135)
T ss_pred             CHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence            2222             5666788999999999999999999999999999  4999999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.40  E-value=5.1e-12  Score=105.47  Aligned_cols=111  Identities=15%  Similarity=0.302  Sum_probs=92.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++++++.....    ....++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence            45678999999999999988888999999988999999999999987653221    11234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..+..++.+++++.+++++|..++.+.+||+| ++++++|+|+..||++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~  113 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhc
Confidence            45677899999999999999999999999999 4699999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.40  E-value=1.5e-11  Score=128.96  Aligned_cols=221  Identities=18%  Similarity=0.257  Sum_probs=146.8

Q ss_pred             eeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCC
Q 011558          190 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  266 (483)
Q Consensus       190 s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~  266 (483)
                      .+|++.+.    .+.+|..++...+...+..+   .+++.++...    .++..+..          +..+..+++++.+
T Consensus        41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~----~I~~vk~~----------~dim~~~~v~i~~  102 (486)
T PRK05567         41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE----EVRKVKRS----------ESGVVTDPVTVTP  102 (486)
T ss_pred             CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH----HHHHhhhh----------hhcccCCCeEeCC
Confidence            48888753    23457788877776544321   2222222111    11111111          1245678999999


Q ss_pred             CCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccc
Q 011558          267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  346 (483)
Q Consensus       267 ~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~  346 (483)
                      ++++.+|++.|.+++++++||+++   ++   +++|++|.+|++...     .       ...            .+.++
T Consensus       103 ~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~------------~V~di  152 (486)
T PRK05567        103 DTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQ------------PVSEV  152 (486)
T ss_pred             CCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCC------------cHHHH
Confidence            999999999999999999999954   45   899999999985321     0       112            23445


Q ss_pred             cC-CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCC
Q 011558          347 NG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  425 (483)
Q Consensus       347 m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  425 (483)
                      |. ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+||++...........-.++.+..           
T Consensus       153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a-----------  221 (486)
T PRK05567        153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA-----------  221 (486)
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe-----------
Confidence            77 688999999999999999999999999999999999999999999985432100000000011111           


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          426 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       426 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                             .+...+ ++ .+.++.|.+.+++ ++|+|..+++..|+++.-+.++.
T Consensus       222 -------ai~~~~-~~-~e~a~~L~~agvd-vivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        222 -------AVGVGA-DN-EERAEALVEAGVD-VLVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             -------ecccCc-ch-HHHHHHHHHhCCC-EEEEECCCCcchhHHHHHHHHHh
Confidence                   112222 22 6778889999998 55777556888887776666654

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.40  E-value=6.5e-12  Score=104.25  Aligned_cols=109  Identities=24%  Similarity=0.368  Sum_probs=91.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+........     ...+.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence            5678999999999999999888999999997 9999999999998755432111     123333             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++..++++.+++++|.+++.+++||+| ++|+++|+||..||++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~  110 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhh
Confidence            56788999999999999999999999999999 4699999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.40  E-value=8.5e-12  Score=103.73  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=90.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|++.........    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence            5678899999999999999888999999997 9999999999998743322111    1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+||++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence            45788999999999999999999999999999 4 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.40  E-value=9.4e-12  Score=103.35  Aligned_cols=108  Identities=23%  Similarity=0.449  Sum_probs=92.2

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      +++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+......      ...++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~   61 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------Y   61 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------H
Confidence            35778999999999999999889999999997 99999999999987553221      1345666             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      |..++.++.+++++.+++++|.+++.+++||+|  +|+++|+||..|+++
T Consensus        62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            445688999999999999999999999999999  489999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.3e-12  Score=107.28  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=92.4

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+++++++||+++  .+|   +++|+++..|+++++.................+        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~--------   68 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL--------   68 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence            5678999999999999999889999999954  225   799999999999876433211000000000000        


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+..
T Consensus        69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence              112346778899999999999999999999999999998899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.40  E-value=1.9e-12  Score=138.30  Aligned_cols=288  Identities=13%  Similarity=0.149  Sum_probs=175.2

Q ss_pred             ccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccH
Q 011558          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (483)
Q Consensus       155 ~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i  234 (483)
                      .++.|+|  ..++++++.+.|+.+|++.|.++++..+||.|.+ ++++|++|..|++..+...... ..+.  .+ ..++
T Consensus        68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~-~~~~--~~-~~t~  140 (546)
T PRK14869         68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP-EILS--KS-PTSL  140 (546)
T ss_pred             CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch-hhhh--hc-CCCH
Confidence            5677877  3589999999999999999999999999999965 5699999999999866543210 0000  00 0111


Q ss_pred             HHHHHHHhh--h-hcc-------cc-------CCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCC--
Q 011558          235 SAWKVGKLQ--L-NLK-------RQ-------MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG--  295 (483)
Q Consensus       235 ~~~~~~~~~--~-~~~-------~~-------~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g--  295 (483)
                      ..+.+....  + +..       ..       ...........++.+.....+   ...+.+.+++.++|+....-..  
T Consensus       141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v  217 (546)
T PRK14869        141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDV  217 (546)
T ss_pred             HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHH
Confidence            111110000  0 000       00       000000112335555443333   3356788899998885321000  


Q ss_pred             ----CcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccC-CCeeEecCCCCHHHHHHHHHhC
Q 011558          296 ----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQA  370 (483)
Q Consensus       296 ----~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~  370 (483)
                          ....+.++.|..|.......-.         ...            .++++|. +++.++.+++++.++.+.|.++
T Consensus       218 ~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~------------~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~  276 (546)
T PRK14869        218 LELAKENGVTVISTPYDTFTTARLIN---------QSI------------PVSYIMTTEDLVTFSKDDYLEDVKEVMLKS  276 (546)
T ss_pred             HHHHHhCCCeEEEecccHHHHHHHhh---------cCC------------CHHHhccCCCcEEECCCCcHHHHHHHHHhc
Confidence                0014778888888766543211         112            3556698 8899999999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHH---HhcCC----CCCCCc-ccCCCcceEE---eCC
Q 011558          371 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA---LQLGQ----DANPSL-GFNGQRCQMC---LRS  439 (483)
Q Consensus       371 ~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~---l~~~~----~~~~~~-~~m~~~~~~v---~~~  439 (483)
                      +++.+||+|++|+++|++|++|++........-   +......+.   +....    -...+. +++...++.+   ...
T Consensus       277 ~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL---VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~g  353 (546)
T PRK14869        277 RYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL---VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVG  353 (546)
T ss_pred             CCCceEEEcCCCCEEEEEEHHHhhccccCceEE---EcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeee
Confidence            999999999999999999999999854421100   000000000   00000    001111 2454444433   346


Q ss_pred             CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          440 DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       440 ~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      .+...+.++|.+.++...+++.  ...+.||+|-++.++
T Consensus       354 st~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~  390 (546)
T PRK14869        354 STSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFK  390 (546)
T ss_pred             eHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCcc
Confidence            7777889999999998777776  356888888777664

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.9e-12  Score=108.69  Aligned_cols=112  Identities=21%  Similarity=0.389  Sum_probs=87.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH-----HhcccccccccCCccHHHHHhcCCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL-----AKDKAYAQIHLDEMNIHQALQLGQDANP  424 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l-----~~~~~~~~~~l~~~~v~~~l~~~~~~~~  424 (483)
                      ++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+.+.     ...+ +  ....+.++.+          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~~~~~~~v~~----------   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG-G--ISRSELTVAD----------   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc-C--CCchheEHHH----------
Confidence            46788999999999999998999999999988999999999999862     1111 0  0011244555          


Q ss_pred             CcccCCCcceE--E----eCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 011558          425 SLGFNGQRCQM--C----LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR  478 (483)
Q Consensus       425 ~~~~m~~~~~~--v----~~~~tl~~~~~~m~~~~~~~l~VVd~~~-~~l~GiIs~~DIl~  478 (483)
                         +|.++...  +    .+++++.+++++|.+++.+++||+| ++ |+++|+||++||++
T Consensus        69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~  125 (126)
T cd04640          69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR  125 (126)
T ss_pred             ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence               44333322  2    3689999999999999999999999 45 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=7.3e-12  Score=104.89  Aligned_cols=110  Identities=18%  Similarity=0.315  Sum_probs=88.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++..+.++.++++.|.+.+ ...++|+| +|+++|+++..|+++.......    ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence            4567899999999999998877 66777777 5899999999999885543211    11234555             4


Q ss_pred             CCCcceEEeCC--CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~--~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      |..++.++.++  +++.+++++|.+++.+++||+| ++|+++|+||++|+++
T Consensus        64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~  114 (115)
T cd04620          64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQ  114 (115)
T ss_pred             cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhc
Confidence            44567788877  7899999999999999999999 4799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.39  E-value=5.3e-12  Score=105.32  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=89.5

Q ss_pred             eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (483)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (483)
                      ++++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++...    .     .....+          
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~----~-----~~~~~~----------   57 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGP----N-----DYETLK----------   57 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhcc----c-----cccccC----------
Confidence            578899999999999999999999999954   45   8999999999876311    0     001112          


Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        +.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        58 --v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          58 --VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence              34447778889999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.39  E-value=1.1e-11  Score=102.89  Aligned_cols=109  Identities=22%  Similarity=0.307  Sum_probs=92.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.+|++.|.+.+.+.+||+|+ ++++|+++..|+.+....+..     .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence            4567899999999999999888999999986 999999999999886643321     1245555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..+++++.+++++.++++.|.+.+.+.+||+| ++|+++|+|+.+||++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence            55788999999999999999999999999999 4699999999999985

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.39  E-value=1.5e-11  Score=131.46  Aligned_cols=194  Identities=18%  Similarity=0.175  Sum_probs=134.2

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccc-----
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP-----  330 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~-----  330 (483)
                      +|.++++++.+++++.+|++.|.+++++.+||+++   +|   +++|++|..||.+.+......  ..+.....+     
T Consensus        73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~--~~~~~~~~t~~~i~  144 (546)
T PRK14869         73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDP--EILSKSPTSLENII  144 (546)
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcch--hhhhhcCCCHHHHH
Confidence            45678999999999999999999999999999964   45   899999999999877543210  000111111     


Q ss_pred             -----------------cccccccccc-cccccccCCC-eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---------
Q 011558          331 -----------------VSSIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDND---------  382 (483)
Q Consensus       331 -----------------v~~l~i~~~~-~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---------  382 (483)
                                       ...+.++... ..+.+.|.+. ++.+...   .+++..+.+.+++++.|+....         
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la  221 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLELA  221 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence                             1111111111 1122334443 4444333   4455567888999998886432         


Q ss_pred             ---cEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEE
Q 011558          383 ---SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLV  458 (483)
Q Consensus       383 ---~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~  458 (483)
                         .+.++.|..|.......- .     ...++.+             +|. +++.++.+++++.++.+.|.+++.+++|
T Consensus       222 ~~~~i~ii~t~~dt~~t~~~l-~-----~~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~P  282 (546)
T PRK14869        222 KENGVTVISTPYDTFTTARLI-N-----QSIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYP  282 (546)
T ss_pred             HhCCCeEEEecccHHHHHHHh-h-----cCCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCceE
Confidence               466777777766643311 0     0245555             777 7899999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHH
Q 011558          459 IVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       459 VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                      ||| ++|+++|+||++|+++..
T Consensus       283 Vvd-~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        283 VVD-EDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             EEc-CCCCEEEEEEHHHhhccc
Confidence            999 579999999999999753

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.39  E-value=7e-12  Score=104.52  Aligned_cols=111  Identities=17%  Similarity=0.306  Sum_probs=90.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++..........   ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence            4667899999999999999889999999997 99999999999985332111110   0134555             55


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|.+++.+++||+| ++++++|+||..||+.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence            55788999999999999999999999999999 4699999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.39  E-value=4e-12  Score=136.46  Aligned_cols=123  Identities=18%  Similarity=0.237  Sum_probs=103.4

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++|+|++++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+........    .+.++.+       
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~----~~~~v~d-------  516 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDT----TDKTAAD-------  516 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccccc----ccchHHH-------
Confidence            57788999999999999999999999999999999999999999999999998744322110    1234454       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~-~~l~GiIs~~DIl~~l~  481 (483)
                            +|.+++.++.+++++.+++++|.+++.+++||||+++ ++++|+||++|+++++.
T Consensus       517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  5666788999999999999999999999999999432 58999999999999875

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.3e-12  Score=106.21  Aligned_cols=114  Identities=16%  Similarity=0.346  Sum_probs=91.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc------cccCCccHHHHHhcCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN  423 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~------~~l~~~~v~~~l~~~~~~~  423 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++.+.........      ..+...++.+         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD---------   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence            4678899999999999999999999999996 99999999999987544211100      0011123333         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                          +|..+..++.+++++.+++++|.+.+.+++||+| + |+++|+||.+|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                5566788999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1e-11  Score=103.56  Aligned_cols=110  Identities=23%  Similarity=0.396  Sum_probs=90.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH-HHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~-~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++ +....+...    ...++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~----~~~~~~~-------------~   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDP----DTTTVGD-------------V   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCc----ccCCHHH-------------h
Confidence            4678999999999999999999999999997 9999999999987 333322111    1123554             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      |...+.++.+++++.++++.|.+.+.+++||+| ++|+++|+|+..|+++
T Consensus        64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~  112 (113)
T cd04622          64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLAR  112 (113)
T ss_pred             ccCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence            555688899999999999999999999999999 4699999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=8.7e-12  Score=104.50  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (483)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (483)
                      +.++.+++++.+|++.|.+++...+||+++   +|   +++|+++..|+++.+......      ....           
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~~-----------   59 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCTA-----------   59 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccC-----------
Confidence            567899999999999999999999999954   45   799999999998765321000      0112           


Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       .+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|+++
T Consensus        60 -~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          60 -PVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             -CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence             234458888999999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.38  E-value=9.5e-12  Score=104.96  Aligned_cols=114  Identities=23%  Similarity=0.340  Sum_probs=91.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc------cCCccHHHHHhcCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN  423 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~------l~~~~v~~~l~~~~~~~  423 (483)
                      ++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+.............      ..+.++.+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence            4677899999999999999999999999997 9999999999998755422110000      00122332         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                          +|..+..++.+++++.++++.|.+.+.+++||+| ++|+++|+||..||++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~  121 (122)
T cd04585          72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFR  121 (122)
T ss_pred             ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhh
Confidence                5666788999999999999999999999999999 4699999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.4e-11  Score=102.51  Aligned_cols=111  Identities=14%  Similarity=0.279  Sum_probs=89.2

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      .+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+++........   +.+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~~   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAG---VLDTTVRA-------------IM   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCc---hhcCCHHH-------------Hh
Confidence            356789999999999999888887887776 59999999999998755421100   11234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++.++.+++++.+++++|.+++..++||+|  +|+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence            45678899999999999999999999999999  3899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.37  E-value=4.9e-12  Score=131.41  Aligned_cols=172  Identities=13%  Similarity=0.150  Sum_probs=131.4

Q ss_pred             ccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHh-----CCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC
Q 011558          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  322 (483)
Q Consensus       248 ~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~-----~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~  322 (483)
                      +..+.+|.+|..+++++++++++.+|++.|.+     ++...++|+|+   ++   +++|+++.+|++..      .   
T Consensus       128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~---  192 (449)
T TIGR00400       128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K---  192 (449)
T ss_pred             CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence            55667778899999999999999999999975     45677888854   34   89999999998641      0   


Q ss_pred             CCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc
Q 011558          323 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  402 (483)
Q Consensus       323 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~  402 (483)
                          ...            .++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|+++...+.. 
T Consensus       193 ----~~~------------~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-  255 (449)
T TIGR00400       193 ----PEE------------ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-  255 (449)
T ss_pred             ----CCC------------cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence                011            244558888999999999999999999999999999999999999999999998765321 


Q ss_pred             cccccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          403 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       403 ~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                               .++...             ...+++.+++++.+++..|.+++...++|.-     +.|++| ..++..
T Consensus       256 ---------~ed~~~-------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~  304 (449)
T TIGR00400       256 ---------TEDFYM-------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN  304 (449)
T ss_pred             ---------HHHHHH-------------hcCCCCCcchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence                     133222             1233445678889999999999987776652     456666 555544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.36  E-value=1e-11  Score=105.38  Aligned_cols=122  Identities=19%  Similarity=0.358  Sum_probs=95.6

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      +++.++.+++++.++++.|.+++++++||+++   +|   +++|+++..++++++......  .....++       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence            46788999999999999999999999999954   35   899999999998766422110  0000000       111


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ....+.++|.+.+.++.+++++.+++++|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            122456668888999999999999999999999999999998999999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.36  E-value=1.7e-11  Score=102.67  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=87.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  426 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  426 (483)
                      ++.++.+++++.++++.|.+.+...+||+|+   +|+++|+++..|++.... .        ..++.+            
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence            4567899999999999999888899999997   789999999999875321 1        123555            


Q ss_pred             ccCCCcceEEeC--CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          427 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       427 ~~m~~~~~~v~~--~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                       +|......+..  ++++.++++.|.+++.+.+|||| ++|+++|+||++||++
T Consensus        62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence             44445566666  99999999999999999999999 5799999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=9.6e-12  Score=104.92  Aligned_cols=111  Identities=19%  Similarity=0.310  Sum_probs=90.3

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.++++..+||+++   ++   +++|+++..|+++...... .      ....          
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~~----------   58 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQKV----------   58 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccCC----------
Confidence            5688999999999999999999999999954   35   7999999999988764210 0      0011          


Q ss_pred             ccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~  395 (483)
                        .+.++|.+  ++.++.+++++.+++++|.+++++.+||+|++   |+++|++|++|+.+
T Consensus        59 --~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          59 --PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             --CHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence              23344664  68899999999999999999999999999976   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=1.1e-11  Score=102.75  Aligned_cols=106  Identities=20%  Similarity=0.387  Sum_probs=88.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++.+++.....         .+.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence            5678899999999999999899999999998899999999999864211         1245555             34


Q ss_pred             CCcceEEeC-CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~-~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ...+..+.+ ++++.+++++|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence            334556667 99999999999999999999999 5799999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=3e-11  Score=100.55  Aligned_cols=110  Identities=15%  Similarity=0.315  Sum_probs=89.9

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++....+....   .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence            4667899999999999999989999999995 59999999999998543221111   1234555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.+++++|.+++.+.+||+| + ++++|+||++||++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVD-D-DELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEee-C-CEEEEEEEhhhhhc
Confidence            55788999999999999999999999999999 3 49999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.35  E-value=1.3e-11  Score=126.50  Aligned_cols=118  Identities=12%  Similarity=0.244  Sum_probs=100.7

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  ++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++......        ...+.+    
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~----  259 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS----  259 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence            56677986  78999999999999999999999999999864 6899999999998643321        123444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|. ++.++.+++++.++++.|.+++.|..+|+| +.|.++|+||..||++.++|
T Consensus       260 ---------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       260 ---------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ---------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence                     332 577999999999999999999999999999 68999999999999999976

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2.1e-11  Score=102.04  Aligned_cols=112  Identities=16%  Similarity=0.270  Sum_probs=91.5

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+++.+.+||+++  ..+   +++|+++.+|+++++......      ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   60 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRV----------   60 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCcc----------
Confidence            4678999999999999999999999999954  225   799999999999876432110      0011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++.++.+++++.++++.|.+.+...+||+|+ |+++|++++.|+++
T Consensus        61 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          61 --NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             --CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence              234457778999999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.35  E-value=9.3e-12  Score=103.30  Aligned_cols=103  Identities=21%  Similarity=0.313  Sum_probs=86.2

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          354 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       354 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.+++++.   .       .+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---~-------~~~~v~~-------------~   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---D-------PDTPVSD-------------I   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---C-------CcchHHH-------------H
Confidence            567889999999998776     4789999988999999999998752   0       0234555             3


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                      |..++..+.+++++.++++.|..++.+.+||+| ++++++|+||..|+++++
T Consensus        59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence            444688999999999999999999999999999 479999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.34  E-value=1.9e-11  Score=101.15  Aligned_cols=109  Identities=19%  Similarity=0.374  Sum_probs=87.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..++++.++++.|.+++.+.+||+|+ |+++|+++..|+.+........ .   +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence            4567899999999999999999999999997 9999999999999865432111 0   234555             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      ..++.++.+++++.+++++|.+ . +.+||++ ++|+++|+||++||+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence            4467889999999999999988 3 3478888 47999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.33  E-value=3.1e-11  Score=99.16  Aligned_cols=103  Identities=16%  Similarity=0.276  Sum_probs=88.0

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++.+++++.++++.|.+++.+.+||+| +++++|+++..|+.+...          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence            456789999999999999988989999998 699999999999976321          133454             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|.+++..++||+| + |+++|+||..||+.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence            45688999999999999999999999999999 4 99999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.7e-11  Score=102.60  Aligned_cols=115  Identities=15%  Similarity=0.198  Sum_probs=91.2

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-cccc-----cCCccHHHHHhcCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH-----LDEMNIHQALQLGQDAN  423 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~~-----l~~~~v~~~l~~~~~~~  423 (483)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..++.+....... ....     ....++.+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ---------   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence            4678999999999999999999999999996 999999999999875432110 0000     00112233         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                          +|..++.++.+++++.++++.|.+++.+++||+| ++++++|++|+.|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY  122 (122)
T ss_pred             ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence                4556788999999999999999999999999998 46999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.32  E-value=1.1e-10  Score=117.64  Aligned_cols=195  Identities=17%  Similarity=0.176  Sum_probs=145.5

Q ss_pred             EEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHhhhhc
Q 011558          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  246 (483)
Q Consensus       167 vi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~  246 (483)
                      .+.+.+..++.+|...|.++++.++||.|.+.+..++++|..-++..+......   +....+-..++..+.        
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~---~~~~~~l~~s~~dl~--------  232 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL---LPLPSLLSKSLSDLG--------  232 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc---cccHHHhhCCHHHhC--------
Confidence            499999999999999999999999999998888999999999888777544331   112222222222210        


Q ss_pred             cccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcc
Q 011558          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  326 (483)
Q Consensus       247 ~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~  326 (483)
                            .  .....+..+..++++.+|+++|.+++++.+||++.   .|   +.+|.++..|+........-      ..
T Consensus       233 ------i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~  292 (381)
T KOG1764|consen  233 ------I--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NN  292 (381)
T ss_pred             ------c--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Cc
Confidence                  1  12346889999999999999999999999999965   34   56999999998776543211      11


Q ss_pred             cccc-cccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          327 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       327 ~~~~-v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      +... +++..      .....-...++++.++.++.++++.|..++++++.|||++|.++|++|.+|++..+.
T Consensus       293 ~~~~~l~~~~------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  293 LDLSCLSEAL------SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             cchhHHHHHh------hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence            1111 21110      000112235899999999999999999999999999999999999999999999665

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.32  E-value=2.8e-11  Score=99.80  Aligned_cols=105  Identities=17%  Similarity=0.356  Sum_probs=89.2

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      +++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++...    .      +.++.+             +
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----~------~~~~~~-------------~   57 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----P------DETVEE-------------I   57 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----c------cccHHH-------------h
Confidence            35678999999999999998888889999996 9999999999987520    0      134555             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      |..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..||++
T Consensus        58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~  106 (107)
T cd04610          58 MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIR  106 (107)
T ss_pred             CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhc
Confidence            455678899999999999999999999999999 4799999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.32  E-value=3.5e-11  Score=101.58  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=91.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-c----ccCCccHHHHHhcCCCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-I----HLDEMNIHQALQLGQDANP  424 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~-~----~l~~~~v~~~l~~~~~~~~  424 (483)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..++.+......... .    .....++.+          
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence            4678899999999999999889999999998899999999999987543211000 0    011234444          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                         +|..++.++..++++.++++.|.+++.+.+||+| + ++++|++|.+||++
T Consensus        72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~  120 (121)
T cd04584          72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR  120 (121)
T ss_pred             ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence               4445688999999999999999999999999999 4 89999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.32  E-value=3.7e-11  Score=99.65  Aligned_cols=108  Identities=21%  Similarity=0.430  Sum_probs=91.0

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++.+++++.+|++.|.+++...+||+++   +|   +++|+++..++++.+....           .+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~--------   56 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS--------   56 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence            46788999999999999999999999999954   45   8999999999987653210           11        


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                          +.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|++++.|+.+
T Consensus        57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                23347678889999999999999999999999999998899999999999865

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.32  E-value=3e-11  Score=99.41  Aligned_cols=100  Identities=15%  Similarity=0.257  Sum_probs=85.5

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCC
Q 011558          352 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ  431 (483)
Q Consensus       352 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~  431 (483)
                      .++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+...           .++.+             +|..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~-------------~~~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVD-------------YIVR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhh-------------hhhc
Confidence            46889999999999999999999999997 99999999999875311           12333             3444


Q ss_pred             cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          432 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       432 ~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ...++.+++++.++++.|.+++.+.+||+|  +|+++|+||..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            678999999999999999999999999998  489999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.31  E-value=1.3e-11  Score=128.47  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=92.2

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcc
Q 011558          351 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  427 (483)
Q Consensus       351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~  427 (483)
                      .+++.+++++.+|+++|.+++++.+||+|+   +++++|+||..|++...  .      ..+.++.+             
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~d-------------  165 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKD-------------  165 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHH-------------
Confidence            358999999999999999999999999996   58999999999986421  0      11356777             


Q ss_pred             cCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          428 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       428 ~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      +|..  +++++.+++++.+|+++|.++++++||||| ++++++|+||++||++.
T Consensus       166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence            5553  688999999999999999999999999999 57999999999999885

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.31  E-value=3.7e-11  Score=100.32  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=90.1

Q ss_pred             eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (483)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (483)
                      .+++.+++++.+|++.|.+++.+.++|+++   +|   +++|+++.+|+++.+.....        ...           
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~-----------   58 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD-----------   58 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC-----------
Confidence            467899999999999999889999999954   45   79999999999876532110        011           


Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       .+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        59 -~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          59 -PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence             233447778889999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.31  E-value=6.3e-11  Score=99.28  Aligned_cols=111  Identities=24%  Similarity=0.428  Sum_probs=93.8

Q ss_pred             cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558          347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  426 (483)
Q Consensus       347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  426 (483)
                      |.+.+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+....+....     .++.+            
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------   66 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------   66 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence            456789999999999999999999999999997 348999999999999766432211     13444            


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHHc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 011558          427 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF  477 (483)
Q Consensus       427 ~~m~~~~~~v~~~~tl~~~~~~m~~-~~~~~l~VVd~~~~-~l~GiIs~~DIl  477 (483)
                       +|..+++++.+++++.++++.|.+ ++++++||+| +++ +++|++|.+|++
T Consensus        67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~  117 (117)
T COG0517          67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL  117 (117)
T ss_pred             -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence             566678999999999999999999 7999999999 465 999999999974

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.9e-11  Score=98.22  Aligned_cols=94  Identities=13%  Similarity=0.238  Sum_probs=83.0

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++.+|+++..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            4678899999999999999999999999954   45   799999999987521                          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                                .+.++.+++++.+|+++|.+++.+.+||+|++|+++|++|++|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1567899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=5.3e-11  Score=98.18  Aligned_cols=111  Identities=23%  Similarity=0.449  Sum_probs=91.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..+.++.++.+.|.+.+.+.+||++++++++|+++..|+............    ..+.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence            45678999999999999999889999999988999999999999886653222111    11333             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++.+++++.++++.|.+.+.+.++|+| ++++++|+++..|+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  112 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILR  112 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhc
Confidence            45678899999999999999999999999999 4699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=4.9e-11  Score=99.27  Aligned_cols=110  Identities=20%  Similarity=0.387  Sum_probs=91.4

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+.+.+.+||+++   ++   +++|+++..++++.+.....        ...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~---------   58 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTP---------   58 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccC---------
Confidence            4678899999999999999999999999954   35   89999999999887643211        1112         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|.+++..+.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus        59 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          59 ---VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ---HHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence               33447788999999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.30  E-value=3.2e-11  Score=125.85  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=96.9

Q ss_pred             cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCC
Q 011558          347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  423 (483)
Q Consensus       347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~  423 (483)
                      |.++++++.+++++.+|+++|.+++++.+||+|+   +|+++|+||.+|+.....         .+.++.+         
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~---------~~~~V~e---------  167 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND---------RETKLSE---------  167 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc---------cCCcHHH---------
Confidence            6678899999999999999999999999999987   489999999999965321         1356776         


Q ss_pred             CCcccCCCc--ceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          424 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       424 ~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                          +|...  ++++.+++++.+|+++|.+++.+++|||| ++++++|+||++||++++.
T Consensus       168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence                45434  78999999999999999999999999999 4799999999999998863

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.30  E-value=2.8e-11  Score=125.56  Aligned_cols=114  Identities=17%  Similarity=0.318  Sum_probs=98.5

Q ss_pred             ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCC
Q 011558          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  420 (483)
Q Consensus       344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~  420 (483)
                      .+.|.+++.++.+++++.+++++|.+++++.+||+|++   ++++|+++.+|++....         .+.++.+      
T Consensus        83 ~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d------  147 (450)
T TIGR01302        83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE------  147 (450)
T ss_pred             cCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH------
Confidence            34467788999999999999999999999999999987   79999999999975321         1245666      


Q ss_pred             CCCCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          421 DANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       421 ~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                             +|. .+++++.+++++.++++.|.+++.+.+|||| ++|+++|+||+.||++.+
T Consensus       148 -------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 -------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             -------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence                   455 3788999999999999999999999999999 589999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.30  E-value=9.7e-11  Score=121.40  Aligned_cols=206  Identities=12%  Similarity=0.118  Sum_probs=138.4

Q ss_pred             CeeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeC
Q 011558          189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  265 (483)
Q Consensus       189 ~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~  265 (483)
                      ..+|++.+    ...-+|..++...+...+..+   .+++.+        .+.+......   .    ...|..+++++.
T Consensus        43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~--------~q~~~l~~VK---v----~~iMi~~pvtv~  103 (479)
T PRK07807         43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIPID--------VVAEVVAWVK---S----RDLVFDTPVTLS  103 (479)
T ss_pred             cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCCHH--------HHHHHHhhcc---c----ccccccCCeEEC
Confidence            45788764    334567777777666554111   233222        2222211111   1    124678899999


Q ss_pred             CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccccc
Q 011558          266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  345 (483)
Q Consensus       266 ~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~  345 (483)
                      +++++.+|++.|.+++++.+||+|+   ++   +++|+||.+|+...     .        ...            .+.+
T Consensus       104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~-----~--------~~~------------~V~d  152 (479)
T PRK07807        104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV-----D--------RFT------------QVRD  152 (479)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC-----c--------cCC------------CHHH
Confidence            9999999999999999999999954   45   89999999997321     0        011            2445


Q ss_pred             ccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCC
Q 011558          346 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  425 (483)
Q Consensus       346 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  425 (483)
                      +|.+++.++.+++++.+|+++|.++++..+||+|++++++|+||++||++........ ..-....+..           
T Consensus       153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a-----------  220 (479)
T PRK07807        153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA-----------  220 (479)
T ss_pred             hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh-----------
Confidence            5889999999999999999999999999999999889999999999999866533110 0000112222           


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCe
Q 011558          426 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR  466 (483)
Q Consensus       426 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~  466 (483)
                             ...+  .....+.++.|.+.+++. .++|..+|+
T Consensus       221 -------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        221 -------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             -------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                   1112  233567778888888875 567754554

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.30  E-value=5.2e-11  Score=98.03  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=87.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++++++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++...              .+         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~---------   52 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GC---------   52 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cc---------
Confidence            4678899999999999999999999999954   45   8999999999986321              11         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|++++++++.
T Consensus        53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence               22336667788999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.30  E-value=2.8e-11  Score=125.27  Aligned_cols=114  Identities=12%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  422 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~  422 (483)
                      +.++|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+....       .   ..++.+        
T Consensus        90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~-------~---~~~V~d--------  150 (475)
T TIGR01303        90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD-------R---FTQVRD--------  150 (475)
T ss_pred             hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC-------C---CCCHHH--------
Confidence            3455778899999999999999999999999999998 47999999999985321       0   134565        


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                           +|..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++..
T Consensus       151 -----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       151 -----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI  203 (475)
T ss_pred             -----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence                 6677899999999999999999999999999999 5799999999999998754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=6.8e-11  Score=98.33  Aligned_cols=111  Identities=20%  Similarity=0.358  Sum_probs=91.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+++++++||+++   ++   +++|+++..++++++......      ....          
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~~----------   59 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALDT----------   59 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccc----------
Confidence            4678899999999999999999999999954   34   799999999999876432110      0011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        60 --~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          60 --PVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             --CHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence              234558788999999999999999999999999999986 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4.7e-11  Score=99.22  Aligned_cols=109  Identities=20%  Similarity=0.422  Sum_probs=90.9

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+.+...+||+++   +|   +++|+++..++++++....         ...+         
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~---------~~~~---------   57 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGG---------PDAP---------   57 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcC---------CCCc---------
Confidence            4678899999999999998888999999954   45   8999999999988764211         0112         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus        58 ---v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          58 ---VRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ---HHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence               33447778899999999999999999999999999998799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.29  E-value=2.8e-11  Score=117.62  Aligned_cols=113  Identities=17%  Similarity=0.292  Sum_probs=96.4

Q ss_pred             cccccccCCC-eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          341 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       341 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      .+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++....+..     .+.++.+     
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~-----  224 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD-----  224 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence            3677889888 9999999999999999999999999999989999999999999885432211     1245666     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEe
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  472 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs  472 (483)
                              +|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+|+
T Consensus       225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~  268 (268)
T TIGR00393       225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH  268 (268)
T ss_pred             --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence                    5666788999999999999999999999999999 4789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.29  E-value=3.4e-11  Score=126.19  Aligned_cols=115  Identities=21%  Similarity=0.368  Sum_probs=100.0

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  422 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~  422 (483)
                      ++++|.+++.++.+++++.+++++|.+++++.+||+|++++++|+++.+|+.....      .   ..++.+        
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d--------  151 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE--------  151 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence            45668889999999999999999999999999999999999999999999964211      0   235555        


Q ss_pred             CCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          423 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       423 ~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                           +|. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||.+||++.+
T Consensus       152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence                 454 5788999999999999999999999999999 589999999999999875

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.1e-11  Score=100.78  Aligned_cols=120  Identities=20%  Similarity=0.378  Sum_probs=93.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..++++++.........  . .....       .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~--~-~~~~~-------~   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGE--E-SLTKE-------R   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccc--c-ccccc-------c
Confidence            4678999999999999999999999999954   35   899999999999876532211000  0 00000       1


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|..++.++.+++++.+++++|.+.+.+.+||+|++|+++|++|..|++.
T Consensus        66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            11345568788999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=4.6e-11  Score=100.03  Aligned_cols=114  Identities=18%  Similarity=0.285  Sum_probs=89.9

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++.+||+++   +|   +++|+++.+++++++......     ...     .+    .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~-----~~~-----~~----~   61 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENL-----DLE-----RL----V   61 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCch-----hHH-----HH----h
Confidence            4678999999999999999999999999954   45   799999999999876432111     000     00    0


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|.+++.++.+++++.+|++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            11344558888999999999999999998754  5999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.28  E-value=1.9e-11  Score=104.33  Aligned_cols=113  Identities=15%  Similarity=0.230  Sum_probs=90.9

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++.+++++.+|++.|.+++++.+||+++   ++   +++|+++..++++.+......       ...         
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~---------   59 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSD---------   59 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCC---------
Confidence            35788999999999999999999999999954   34   799999999998766432111       112         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                         +++++|.+++.++.+++++.++.+++.         +.+...+||++++|+++|++|++|++++
T Consensus        60 ---~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          60 ---PVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             ---cHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence               345559999999999999999999653         3356788999988999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.27  E-value=2.2e-11  Score=116.21  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=102.7

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      .|.|+|.  ....++.+++++.+-.++..+.+.+++||+|...+++|++|.+|+.....          +.++.+     
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK-----  253 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK-----  253 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence            5677787  57889999999999999999999999999999999999999999876221          244555     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                              +|+++++++.+.+|+..+.++|.=.++.-+||+| ++.+++|+||++|+++.|
T Consensus       254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l  305 (432)
T COG4109         254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence                    7888999999999999999999999999999999 689999999999999987

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1e-10  Score=102.38  Aligned_cols=126  Identities=19%  Similarity=0.304  Sum_probs=91.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc------ccCCccHHHHHhc----
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL----  418 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~------~l~~~~v~~~l~~----  418 (483)
                      +++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ...      .....++.++++.    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            4678999999999999999999999999997 999999999999886542221 000      0000111111000    


Q ss_pred             ---CCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          419 ---GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       419 ---~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                         ......+. ++|..++.++.+++++.+++..|.+.+.+++||++ + |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence               00001111 15666789999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=6.4e-11  Score=101.07  Aligned_cols=124  Identities=15%  Similarity=0.229  Sum_probs=91.5

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      .++++++++++.+|++.|.+++++.+||+++   .|   +++|+++..|+++.........    .........+.  ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~--~~   69 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELS--EK   69 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhh--hh
Confidence            4678999999999999999999999999954   35   8999999999988653211100    00000000000  00


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      .....+.|..++.++.+++++.+|+++|.+++.+.+||+|++++++|++|.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            00112346678899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.27  E-value=2.9e-10  Score=117.71  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      +.++++++.+++++.+|++.|.+++++.+||+++    +   +++|++|.+|+...      .       ...       
T Consensus        94 m~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------~-------~~~-------  146 (475)
T TIGR01303        94 VLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------D-------RFT-------  146 (475)
T ss_pred             cccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------C-------CCC-------
Confidence            4677899999999999999999999999998853    4   79999999997321      0       012       


Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                           .+.++|..+++++.+++++.+|+++|.++++..+||+|++|+++|+||++||++....
T Consensus       147 -----~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       147 -----QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             -----CHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence                 2445599999999999999999999999999999999989999999999999986553

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.27  E-value=3.7e-11  Score=124.86  Aligned_cols=116  Identities=15%  Similarity=0.253  Sum_probs=99.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  416 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l  416 (483)
                      +++++|++++.+++++.++.++++.|.+     .+...++|+|++++++|+++.+|++..   .       .+.++++  
T Consensus       132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---~-------~~~~v~~--  199 (449)
T TIGR00400       132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---K-------PEEILSS--  199 (449)
T ss_pred             hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---C-------CCCcHHH--
Confidence            5667799999999999999999999975     456789999999999999999998642   1       1235666  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                 +|.++++++.+++++.+|++.|.+++...+|||| ++|+++|+||.+|+++.+.
T Consensus       200 -----------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       200 -----------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             -----------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence                       5556788999999999999999999999999999 5799999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.27  E-value=9.1e-11  Score=98.25  Aligned_cols=111  Identities=18%  Similarity=0.367  Sum_probs=90.7

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..|+++.+......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   58 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS----------   58 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence            4567889999999999999999999999954   45   899999999998866421100       011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~di~~  395 (483)
                        .+.++|.+++.++.+++++.+++++|.+++...+||+|++  |+++|++|.+|+++
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence              1334477789999999999999999999999999999987  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.27  E-value=4.2e-11  Score=100.13  Aligned_cols=109  Identities=15%  Similarity=0.250  Sum_probs=87.0

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~-~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++.++.+++++.+|++.|.+++ .+.+||+++   +|   +++|+++..|+++......         ...++.      
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~------   60 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVI------   60 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchh------
Confidence            4678899999999999987765 889999954   45   7999999999988653210         012232      


Q ss_pred             cccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                            ++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        61 ------~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          61 ------QVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ------hhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                  33543  3568999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.25  E-value=1.2e-10  Score=98.00  Aligned_cols=113  Identities=17%  Similarity=0.236  Sum_probs=88.4

Q ss_pred             CeeEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          350 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+........... ...+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~v~~-------------~   66 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA-LYGKKPVSE-------------V   66 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH-HHcCCcHHH-------------h
Confidence            4567899999999999998876 889999998 99999999999987544211000 011234454             5


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVR---RLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~---~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      |..++.++.+++++.++++.|.+++.+   ..+||+ ++|+++|+||..|+++
T Consensus        67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~  118 (119)
T cd04598          67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence            666788999999999999999999864   346888 4799999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=9.7e-11  Score=99.51  Aligned_cols=123  Identities=20%  Similarity=0.326  Sum_probs=93.9

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|+++|.+++.+.+||+++  ++|   +++|+++..++++++.........    ......    ...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~~----~~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI----KTGNGL----EAI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc----cccccc----hhh
Confidence            4678899999999999999999999999954  225   899999999999877532111000    000000    001


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            12344557788999999999999999999999999999998799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.25  E-value=9.4e-11  Score=97.06  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=89.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..+++...             ...+         
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~---------   54 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT---------   54 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence            5788999999999999999999999999954   45   899999999986421             0122         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence               33447778889999999999999999999999999998999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=7.6e-11  Score=98.35  Aligned_cols=112  Identities=23%  Similarity=0.299  Sum_probs=90.9

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+++.+.+||+++   ++   +++|+++..++++.+.......     ....          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~----------   60 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGVA----------   60 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCCc----------
Confidence            4678899999999999999889999999954   44   8999999999998764321000     0011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        61 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          61 --TVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             --cHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence              244557778889999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.25  E-value=1.2e-10  Score=97.04  Aligned_cols=111  Identities=19%  Similarity=0.351  Sum_probs=91.7

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.++++.|.+.+.+.+||+++   +|   +++|+++..++++.+......       ...          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~----------   59 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTL----------   59 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccC----------
Confidence            4667899999999999998888899999954   35   799999999999876532211       011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|+++..||++
T Consensus        60 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          60 --PVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             --CHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence              234457788889999999999999999999999999998899999999999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.25  E-value=1.1e-10  Score=96.35  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=86.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  426 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  426 (483)
                      ....+.+++++.++.+.|.+.+...+||+|+   +|+++|+++..|+.+....                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            4567899999999999999988889999998   6999999999999874432                           


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          427 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       427 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                       +|..++.++.+++++.++++.|.+++.+.+||++  +|+++|+||+.||+++
T Consensus        56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA  105 (105)
T ss_pred             -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence             1223567899999999999999999999999997  5899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.1e-10  Score=97.12  Aligned_cols=109  Identities=15%  Similarity=0.267  Sum_probs=89.5

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+++++++.+|++.|.+++.+.+||+++   .|   +++|+++..|++.+.....        ....+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~---------   58 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKK---------   58 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCc---------
Confidence            4678899999999999999999999999954   45   7999999999987542110        01122         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|.+++.++.+++++.+|++.|.+++...+||+++ |+++|++|..|++.
T Consensus        59 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          59 ---VFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             ---HHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence               33447788899999999999999999999999999997 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.4e-10  Score=96.64  Aligned_cols=110  Identities=14%  Similarity=0.246  Sum_probs=89.8

Q ss_pred             eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (483)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (483)
                      ...+.+++++.+|++.|.+.+.+.+||+++   ++   +++|+++..|+++.+....       .+...           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~~-----------   58 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKDA-----------   58 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcCC-----------
Confidence            567899999999999999999999999954   34   7999999999987543210       00111           


Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       .+.++|..++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        59 -~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          59 -KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             -cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence             233447778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.24  E-value=1.7e-10  Score=95.35  Aligned_cols=106  Identities=20%  Similarity=0.336  Sum_probs=89.3

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.++++..+||+++   ++   +++|+++..|+++....            ..+         
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~---------   55 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS---------   55 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence            4677899999999999999999999999954   35   79999999999875421            012         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+++.+|+++
T Consensus        56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence               23347778889999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.24  E-value=1.5e-10  Score=97.50  Aligned_cols=120  Identities=19%  Similarity=0.288  Sum_probs=93.4

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+.+...+||+++    |   +++|+++..+++++.........         ..+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            4678899999999999999999999999953    4   89999999999887642211100         000000011


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            12355668888999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.23  E-value=1.6e-10  Score=95.91  Aligned_cols=109  Identities=16%  Similarity=0.240  Sum_probs=88.6

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++.+.+||+++  ..|   +++|+++..++++.......         ..++.       
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~-------   60 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLR-------   60 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHH-------
Confidence            4678999999999999999999999999954  225   89999999999987642110         01122       


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                           ++| .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus        61 -----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          61 -----DLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -----HHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                 224 35788999999999999999999999999998899999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=1.6e-10  Score=96.67  Aligned_cols=110  Identities=20%  Similarity=0.352  Sum_probs=86.6

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~-~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      +..++++++++.+|++.|.+++ ...++|.+    .|   +++|+++..|+++++.....       ....+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~--------   59 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDLP--------   59 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------ccccC--------
Confidence            3567899999999999998888 56677763    24   79999999999886532110       00112        


Q ss_pred             cccccccccCCCeeEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                          +.++|.+++.++.++  +++.+++++|.+++...+||+|++|+++|++|++|+++
T Consensus        60 ----i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          60 ----IGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ----HHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                334477788888877  68999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.23  E-value=8.5e-11  Score=101.61  Aligned_cols=128  Identities=19%  Similarity=0.347  Sum_probs=93.8

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccc--cccccc--
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ--QPVSSI--  334 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~--~~v~~l--  334 (483)
                      +++.++.+++++.+|++.|.+++++++||+++   ++   +++|+++..++++.+...+.....  .+..  ......  
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~   73 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELAA   73 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHHH
Confidence            46788999999999999999999999999954   45   799999999998765322110000  0000  000000  


Q ss_pred             c-ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          335 Q-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       335 ~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      . .......+.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|++|+.|+++
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            0 00011235566888899999999999999999999999999999 899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.23  E-value=1.5e-10  Score=96.15  Aligned_cols=109  Identities=20%  Similarity=0.371  Sum_probs=89.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+++.+.+||+++    +   +++|+++..++++.+.... .      ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~-~------~~~~----------   57 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG-L------DPDT----------   57 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC-C------CccC----------
Confidence            4678899999999999999999999999953    4   8999999999987653210 0      0011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence              234447788999999999999999999999999999986 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.23  E-value=5.1e-11  Score=94.24  Aligned_cols=75  Identities=27%  Similarity=0.387  Sum_probs=61.5

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeeeE
Q 011558           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (483)
Q Consensus        22 ~~~f~~-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~   99 (483)
                      .++|+. ...|++|.|.|+|++|.. .+|.+.+  +|+|++++. |++|.|+|+|++||.|..||..+...-+.+..-|.
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            367764 556999999999998875 7998876  899999984 88899999999999999999999777555554443

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.23  E-value=1.1e-10  Score=116.51  Aligned_cols=114  Identities=17%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             CCCCC--eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~~--~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.++  ++++++++++.+|++.|.+++...+||+|+   +|   +++|+++..|+.+.+....        ....    
T Consensus       202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~~~----  263 (321)
T PRK11543        202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------ALTT----  263 (321)
T ss_pred             HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------CcCC----
Confidence            45666  999999999999999999888899999964   45   8999999999987653210        0111    


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                              .+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|+++
T Consensus       264 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~  317 (321)
T PRK11543        264 --------PVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ  317 (321)
T ss_pred             --------cHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence                    244568889999999999999999999999999999998899999999999986

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.7e-10  Score=99.97  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=93.7

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCC-CCCCccc---cccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPIL---QQPVSSIQ  335 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~-~~~~~~~---~~~v~~l~  335 (483)
                      ++.++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++++....... ......+   ...-....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            3577899999999999999999999999954   45   8999999999998764211100 0000000   00000000


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      .......+.++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            011122466778888999999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.22  E-value=9.5e-11  Score=122.36  Aligned_cols=113  Identities=19%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             cccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          345 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       345 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +.|..+++++.+++++.+++++|.+++++.+||+|++   ++++|+++.+|+.....         .+.++.+       
T Consensus       100 ~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d-------  163 (495)
T PTZ00314        100 NGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE-------  163 (495)
T ss_pred             cccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH-------
Confidence            3466788999999999999999999999999999973   79999999999873211         1345666       


Q ss_pred             CCCCcccCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          422 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       422 ~~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                            +|.+  +++++.+++++.+++++|.+++++.+|||| ++++++|+||++||++..
T Consensus       164 ------iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        164 ------VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence                  5554  688999999999999999999999999999 579999999999999764

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.5e-10  Score=99.65  Aligned_cols=125  Identities=18%  Similarity=0.357  Sum_probs=93.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC---CCccc--ccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPIL--QQPVSSI  334 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~---~~~~~--~~~v~~l  334 (483)
                      +++++.+++++.+|++.|.+++++++||+++   ++   +++|+++..++++++.........   ....+  +.....+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL   75 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence            4678999999999999999999999999954   35   799999999999877532111000   00000  0000000


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                          ....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus        76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence                001355668888899999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.22  E-value=1.5e-10  Score=121.24  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=96.7

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+..|+++.+......    .+.++.+       
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~v~~-------  404 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKAN----PDDAVSK-------  404 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCC----cCCCHHH-------
Confidence            56788999999999999999999999999999999999889999999999998855432111    1235565       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                            +|..++.++.+++++.+++++|.+++   .+||+ ++++++|+||++||+++|
T Consensus       405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence                  55567889999999999999998764   34555 269999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.6e-10  Score=93.94  Aligned_cols=104  Identities=19%  Similarity=0.366  Sum_probs=87.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  429 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  429 (483)
                      ++.++..+.++.+++..|.+.+.+.+||++++++++|+++..++.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence            3567888999999999999888999999998899999999999875211          123333             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      ..++.++..++++.+++++|.+++.+.+||+| + |+++|+||..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence            44678899999999999999999999999999 3 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.21  E-value=3.1e-10  Score=94.02  Aligned_cols=108  Identities=22%  Similarity=0.420  Sum_probs=89.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++.+.+++++.+|++.|.+++++.+||+++    +   +++|+++..++++...... .        ..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~-~--------~~----------   55 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGL-E--------LA----------   55 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccc-c--------cc----------
Confidence            5678999999999999999999999999942    4   7999999999988643210 0        01          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence              233447778899999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.21  E-value=3.1e-10  Score=94.10  Aligned_cols=109  Identities=24%  Similarity=0.421  Sum_probs=90.4

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+++.+.+||+++    +   +++|+++.+|++++......        ...          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~~----------   56 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQT----------   56 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CCc----------
Confidence            4678899999999999999888999999953    4   89999999999887632110        112          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|.+++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus        57 --~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          57 --PVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             --CHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence              234447778899999999999999999999999999998899999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.21  E-value=2.8e-10  Score=94.35  Aligned_cols=108  Identities=20%  Similarity=0.421  Sum_probs=89.9

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++++++++.+|++.|.+++..++||+++    |   +++|+++..|+++.+....         ...++       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~~~-------   58 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHAPV-------   58 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccCcH-------
Confidence            36788999999999999999889999999953    4   7999999999987652110         11223       


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                           .++|.+++.++.+++++.+++++|.+.+.+.+||++ +|+++|++|..|+++
T Consensus        59 -----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          59 -----KDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             -----HHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                 344777889999999999999999999999999999 899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.21  E-value=2.1e-10  Score=95.52  Aligned_cols=111  Identities=25%  Similarity=0.366  Sum_probs=91.4

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+++++.+||+++   ++   +++|+++..++++++.....        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   56 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD-----------   56 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence            4678999999999999999999999999954   34   79999999999876532100        00           


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~  395 (483)
                      ...+.++|.+++.++.+++++.++++.|.+.+...+||+|+ .++++|+++..|++.
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            01344558888999999999999999999999999999997 799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.8e-10  Score=97.32  Aligned_cols=120  Identities=22%  Similarity=0.396  Sum_probs=92.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..++++..........   .....       ...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence            4678999999999999999999999999954   45   89999999999875321100000   00000       001


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|.+++..+..++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            12345567788899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.20  E-value=1.7e-10  Score=115.36  Aligned_cols=114  Identities=18%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.+  +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|++|..|+++.+....       .+..     
T Consensus       207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~~-----  268 (326)
T PRK10892        207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLRQ-----  268 (326)
T ss_pred             HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------Cccc-----
Confidence            4555  8999999999999999999988888888854   45   8999999999987542110       0001     


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                             ..+.++|.+++.++.+++++.+|+++|.+++++.+||++ +|+++|++|++|+++
T Consensus       269 -------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~  322 (326)
T PRK10892        269 -------ASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLR  322 (326)
T ss_pred             -------CCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHh
Confidence                   135566999999999999999999999999999999997 689999999999986

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.20  E-value=3e-10  Score=94.60  Aligned_cols=111  Identities=15%  Similarity=0.232  Sum_probs=89.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+++.+.+||+++    +   +++|+++..++++.+......     . ...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-----~-~~~~---------   59 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD-----P-ESTL---------   59 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC-----c-CcCC---------
Confidence            4677899999999999999889999999942    4   899999999998654321100     0 0122         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++.+|++.
T Consensus        60 ---v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          60 ---VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             ---HHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence               33447778889999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2.4e-10  Score=97.69  Aligned_cols=124  Identities=15%  Similarity=0.269  Sum_probs=91.5

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+.+.+.+||+++   ++   +++|++|..|+++++........     ........ -...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence            4678899999999999999999999999954   35   89999999999876532110000     00000000 0001


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~di~~  395 (483)
                      ...+.++|.++++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            1134566888899999999999999999999999999984  4689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.20  E-value=2e-10  Score=119.83  Aligned_cols=110  Identities=17%  Similarity=0.203  Sum_probs=91.3

Q ss_pred             EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (483)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (483)
                      +++.+++++.+|++.|.+++++.+||+++..+++   +++|+||..||....           ...+.+           
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~~-----------  162 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDTK-----------  162 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCCC-----------
Confidence            5899999999999999999999999996422245   899999999985310           011233           


Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                       +.++|++  +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++..
T Consensus       163 -V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        163 -VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             -HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence             4455886  788999999999999999999999999999889999999999998843

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=2.5e-10  Score=96.35  Aligned_cols=119  Identities=19%  Similarity=0.439  Sum_probs=92.0

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..++++.+.........  .........      
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~------   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRN------   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhc------
Confidence            5678999999999999999999999999953    5   899999999998876432111000  000011111      


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       ..+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence             1344557788999999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.18  E-value=4.6e-10  Score=94.00  Aligned_cols=110  Identities=26%  Similarity=0.493  Sum_probs=93.8

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      .+..+++.++.++.+|+..|.++++..+||++.    +   +++|++|.+|+++.+.......        .        
T Consensus         6 ~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~--------   62 (117)
T COG0517           6 TKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------L--------   62 (117)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------c--------
Confidence            467899999999999999999999999999954    1   6999999999999886432210        0        


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHh-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT  394 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiit~~di~  394 (483)
                          .+.++|..++.++.++.++.++.+.|.+ ++++.+||+++++ +++|++|+.|++
T Consensus        63 ----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 ----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             ----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                2445588889999999999999999999 7999999999886 999999999973

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=4.3e-10  Score=93.62  Aligned_cols=111  Identities=20%  Similarity=0.349  Sum_probs=89.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..+++..+...  .    .. ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~--~----~~-~~~----------   57 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAE--G----RD-PDT----------   57 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhc--c----CC-ccc----------
Confidence            4678999999999999999999999999943    5   899999999987332110  0    00 001          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       ..+.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        58 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 -TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             -CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence             1234457778889999999999999999999999999998899999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.18  E-value=4.9e-10  Score=92.87  Aligned_cols=109  Identities=23%  Similarity=0.370  Sum_probs=90.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++.+.+++++.+|++.|.+.+.+.+||+++    +   +++|+++..|+++........        .           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~--------~-----------   55 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGREA--------T-----------   55 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCccc--------c-----------
Confidence            5678999999999999999889999999943    4   799999999998755321000        0           


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       ..+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus        56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             1233447788999999999999999999999999999998899999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=5.4e-10  Score=92.92  Aligned_cols=110  Identities=17%  Similarity=0.364  Sum_probs=88.0

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      .+.++.+++++.+|++.|.+++.+.++|.+    +|   +++|+++..|+++++......      ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   58 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDT----------   58 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcC----------
Confidence            367889999999999999888887777663    25   899999999999876421000      0011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++.++.+++++.+|+++|.+++...+||++ +|+++|++|.+|+++
T Consensus        59 --~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          59 --TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             --CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence              24455777888999999999999999999999999998 599999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.18  E-value=9.4e-10  Score=107.61  Aligned_cols=164  Identities=15%  Similarity=0.217  Sum_probs=120.3

Q ss_pred             hccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 011558          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (483)
Q Consensus       152 l~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~  231 (483)
                      |...++.|+|-.-.+++.++.+.|+.++++.+.+++...+||++.+.++++|+++..|++..+..   .....       
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~-------  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF-------  133 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence            45789999997767899999999999999999999999999999766789999999999854421   00010       


Q ss_pred             ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (483)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~  311 (483)
                       .+..                   ++. +.+.+++++++.++++.|.+++.+.+||+|+   .|   .++|+||..||+.
T Consensus       134 -~l~~-------------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle  186 (292)
T PRK15094        134 -SMDK-------------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE  186 (292)
T ss_pred             -CHHH-------------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence             1111                   122 3458999999999999999999999999964   45   6999999999999


Q ss_pred             HHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHH
Q 011558          312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (483)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  367 (483)
                      .+.........  ..-...+..+.             ..-..+...+++.++.+.+
T Consensus       187 ~ivGei~de~d--~~~~~~i~~~~-------------~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        187 LIVGEIEDEYD--EEDDIDFRQLS-------------RHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             HHhCCCccccc--cccccccEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence            98754322110  00001122221             2345688888888888876

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.17  E-value=4.6e-10  Score=93.91  Aligned_cols=109  Identities=18%  Similarity=0.274  Sum_probs=86.7

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++...+||+|+...+|   +++|+++..|++....    .        ..+         
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~----~--------~~~---------   58 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD----S--------ETP---------   58 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc----c--------CCC---------
Confidence            457888999999999999988999999995321235   8999999999864210    0        112         


Q ss_pred             ccccccccCCCeeEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|......+..  ++++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus        59 ---v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          59 ---LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ---HHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence               33447766677766  999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.17  E-value=8.8e-10  Score=112.98  Aligned_cols=162  Identities=16%  Similarity=0.185  Sum_probs=121.5

Q ss_pred             hccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 011558          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (483)
Q Consensus       152 l~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~  231 (483)
                      |++.++.|+|-.-.++++++.+.|+.++++.+.+++.+..||++.+.++++|+++..|++..+.   .  ...       
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~-------  255 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF-------  255 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC-------
Confidence            3578899999887889999999999999999999999999999987778999999999974321   1  000       


Q ss_pred             ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (483)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~  311 (483)
                       .+..                   . .+++..+++++++.++++.|.+++.|.++|+|+   .|   ...|+||.+||++
T Consensus       256 -~l~~-------------------~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDile  308 (408)
T TIGR03520       256 -DWQS-------------------L-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIE  308 (408)
T ss_pred             -CHHH-------------------H-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHH
Confidence             1111                   1 235689999999999999999999999999964   45   6999999999999


Q ss_pred             HHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHH
Q 011558          312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV  368 (483)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~  368 (483)
                      .+........   ..-...+..+             ......++...++.++.+.|.
T Consensus       309 eivgei~de~---d~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       309 EIVGDISDEF---DDEDLIYSKI-------------DDNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             HHhCCCCCcC---CcCccceEEe-------------CCCeEEEEeccCHHHHHHHhC
Confidence            9864322110   0001112222             123456788899999988873

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=4.5e-10  Score=94.99  Aligned_cols=120  Identities=23%  Similarity=0.321  Sum_probs=94.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++.+||+++    |   +++|+++..++++.+........       ....+.  ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence            4678999999999999999999999999952    5   89999999999887654321100       000000  111


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|..++..+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            22355668888999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=7.5e-10  Score=92.05  Aligned_cols=110  Identities=21%  Similarity=0.387  Sum_probs=89.0

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.+|++.|.+.+.+.+||+++    +   +++|+++..|+++.+......      ....          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   58 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREV----------   58 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccC----------
Confidence            4677899999999999999989999999953    3   799999999999866422100      0011          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|.+++.++.+++++.++++.|.+.+...+||+|++ +++|+++++|+++
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence              2344577788899999999999999999999999999865 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.16  E-value=1.6e-10  Score=116.92  Aligned_cols=118  Identities=18%  Similarity=0.308  Sum_probs=101.7

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      .+..+.++++|.+++.+|...|.++|++++.+++.   ++   ...||+|.+|+.+.+....+.       ...      
T Consensus       154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~~------  214 (610)
T COG2905         154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KTQ------  214 (610)
T ss_pred             HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------ccc------
Confidence            46788999999999999999999999998888854   44   789999999999988653322       123      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                            +|+++|+.++++++..+.+.+|.-+|.++++.++||++ +|+++|++|..||+++...
T Consensus       215 ------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         215 ------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             ------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence                  34555999999999999999999999999999999997 7999999999999998763

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=3.7e-10  Score=96.35  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHh--hccCCCCCCccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~--~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      +++++.+++++.+|++.|.+++.+.+||+++   .|   +++|+++..|+++....  .....   ......        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~--------   64 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSEL--------   64 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchhe--------
Confidence            3678899999999999999899999999954   45   89999999998863210  00000   000112        


Q ss_pred             ccccccccccCCCeeEe------cCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 011558          338 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  395 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~  395 (483)
                          .+.++|.++...+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        65 ----~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          65 ----TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ----EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                2344576654333      368899999999999999999999986 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.14  E-value=5.4e-10  Score=92.43  Aligned_cols=106  Identities=20%  Similarity=0.338  Sum_probs=85.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.++++.|.+++...+||+++   +|   +++|+++.+++++..     .       ...+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~---------   55 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKP---------   55 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCC---------
Confidence            5678899999999999999999999999954   35   899999999985321     0       0122         


Q ss_pred             ccccccccCCCeeEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|...+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        56 ---v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          56 ---VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ---HHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence               33446665666666 999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=1e-09  Score=90.38  Aligned_cols=111  Identities=23%  Similarity=0.457  Sum_probs=91.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.++++.|.+++.+.+||+++   ++   +++|+++..++++.+........       .          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~----------   58 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V----------   58 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence            4677899999999999999989999999954   34   89999999999987754322110       0          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|..++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus        59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              023346678888999999999999999999999999999899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.14  E-value=1e-09  Score=91.14  Aligned_cols=109  Identities=14%  Similarity=0.234  Sum_probs=88.3

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      .++++.+++++.+|++.|.+++...++|+++    +   +++|+++..++++.+.....       ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~~----------   57 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSST----------   57 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCCC----------
Confidence            3567899999999999999989999999942    4   79999999999876532100       0112          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .+.++|.+++..+.+++++.++++.|.+++...+||+|+ |+++|+++..|+++
T Consensus        58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          58 --PVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             --CHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence              233447778899999999999999999999999999984 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.13  E-value=6.3e-10  Score=116.28  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=95.8

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      +.++++++.+++++.+|+++|.+++++.+||++++..++   +++|+||.+|+....            ....+      
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~------  164 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETK------  164 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCc------
Confidence            457889999999999999999999999999996411135   899999999985321            01223      


Q ss_pred             cccccccccccCCC--eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       337 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            +.++|+++  ++++.+++++.+|+++|.+++...+||+|++++++|+||++||++...
T Consensus       165 ------V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        165 ------LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             ------HHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                  34458766  889999999999999999999999999999999999999999998665

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.13  E-value=8.1e-10  Score=91.31  Aligned_cols=108  Identities=20%  Similarity=0.409  Sum_probs=86.3

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++.+||+++    +   +++|+++..++++.+......       ...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~~---------   58 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSLP---------   58 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCcC---------
Confidence            4678899999999999999999999999942    4   799999999999876432110       0112         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|+++.+|+++
T Consensus        59 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          59 ---VREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             ---HHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence               334477788899999999999999987 3 34789988899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.13  E-value=1e-09  Score=90.01  Aligned_cols=102  Identities=19%  Similarity=0.394  Sum_probs=86.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++..+.+++++.++++.|.+++.+.+||+++    +   +++|+++..++++..             ...+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~~---------   52 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNRL---------   52 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccCC---------
Confidence            4677899999999999999889999999942    4   899999999987521             0112         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  394 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~  394 (483)
                         +.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus        53 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          53 ---VADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             ---HHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence               23447778899999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.12  E-value=1.6e-09  Score=112.45  Aligned_cols=165  Identities=18%  Similarity=0.258  Sum_probs=116.6

Q ss_pred             CeeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeC
Q 011558          189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  265 (483)
Q Consensus       189 ~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~  265 (483)
                      ..+|++.+.    ..-+|..++..++......+   .+++.++-.    ..++..+.      ..+    .+.++++++.
T Consensus        33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~----~~V~~Vk~------~~~----~~~~~~vtl~   94 (450)
T TIGR01302        33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA----EQVKRVKR------AEN----GIISDPVTIS   94 (450)
T ss_pred             cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH----HHHhhhcc------ccC----ceecCceEeC
Confidence            457777643    23468888877776554322   222222110    11111111      111    3456889999


Q ss_pred             CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccccc
Q 011558          266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  345 (483)
Q Consensus       266 ~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~  345 (483)
                      +++++.+|++.|.+++++++||++++...+   +++|+++.+|++...     .       ...+            +.+
T Consensus        95 ~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~------------V~d  147 (450)
T TIGR01302        95 PETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKP------------VSE  147 (450)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCC------------HHH
Confidence            999999999999999999999996521114   899999999986421     0       1122            344


Q ss_pred             ccC-CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          346 ANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       346 ~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      +|. .++.++.+++++.++++.|.+++...+||+|++|+++|+||+.||++...
T Consensus       148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            487 48999999999999999999999999999999999999999999998543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.12  E-value=7.4e-10  Score=95.71  Aligned_cols=109  Identities=21%  Similarity=0.304  Sum_probs=79.9

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccc-------CCccHHHHHhcCCCC
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-------DEMNIHQALQLGQDA  422 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l-------~~~~v~~~l~~~~~~  422 (483)
                      ++.++.+++++.+|++.|.+.+++.+||+|++|+++|+++..|+++............       ....+.++....   
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---   78 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG---   78 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence            4678999999999999999999999999999999999999999998654322111000       001122211100   


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeC
Q 011558          423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA  462 (483)
Q Consensus       423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~  462 (483)
                       .-++.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus        79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence             000123457889999999999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.11  E-value=7.6e-10  Score=91.71  Aligned_cols=102  Identities=17%  Similarity=0.284  Sum_probs=83.4

Q ss_pred             eCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          264 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       264 v~~~~sl~~a~~~m~~~~-----~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      +.+++++.++++.|.+++     +..+||+++   ++   +++|+++.+++++.      .       .+.+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------~-------~~~~--------   54 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------D-------PDTP--------   54 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------Ccch--------
Confidence            568899999999998776     467899954   34   79999999988641      0       0112        


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                          +.++|.+++..+.+++++.++++.|.+.+...+||+|++|+++|+++..|+++.
T Consensus        55 ----v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          55 ----VSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             ----HHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence                334477788999999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.11  E-value=1.8e-09  Score=112.79  Aligned_cols=114  Identities=20%  Similarity=0.227  Sum_probs=94.5

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      +..+++++.+++++.+|+++|.+++++.+||++++..++   +++|++|.+|+.. ..    .       ...+      
T Consensus       102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~----~-------~~~~------  160 (495)
T PTZ00314        102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK----D-------KSTP------  160 (495)
T ss_pred             cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc----c-------CCCC------
Confidence            346778999999999999999999999999996422235   8999999999862 10    0       1222      


Q ss_pred             cccccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          337 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       337 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                            +.++|++  +++++.+++++.+|+++|.+++...+||+|++++++|+||++||++..
T Consensus       161 ------V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        161 ------VSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------HHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                  4455876  889999999999999999999999999999999999999999999754

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.10  E-value=1.2e-09  Score=92.09  Aligned_cols=119  Identities=16%  Similarity=0.292  Sum_probs=91.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++++++++.+|++.|.+.+.+++||+++   ++   +++|+++..++++..........         ..+. ....
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence            4678899999999999999899999999954   35   89999999999876532211100         0000 0011


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ...+.++|..++.++..++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            11344557788899999999999999999999999999986 99999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=1.4e-09  Score=95.03  Aligned_cols=126  Identities=25%  Similarity=0.466  Sum_probs=95.6

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhcc-C---CCCCCccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK-H---SSSSLPILQQPVSSIQ  335 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~-~---~~~~~~~~~~~v~~l~  335 (483)
                      +++++.+++++.+|++.|.+++++.+||+++    +   +++|+++..++++++..... .   .+.....+..++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            5678999999999999999999999999952    4   89999999999987753221 0   001111122222222 


Q ss_pred             cccc-----------ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          336 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       336 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                       ..|           ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           12456778888999999999999999999999999999987 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.10  E-value=1.8e-09  Score=88.89  Aligned_cols=105  Identities=20%  Similarity=0.432  Sum_probs=87.6

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++.++.++.+|++.|.+++...+||+++    +   +++|+++..+++..      .       ...+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~~--------   53 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDET--------   53 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------cccc--------
Confidence            45778999999999999998888889999842    4   89999999998641      0       0112        


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                          +.++|...+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        54 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          54 ----VEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ----HHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                33447778889999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=99.09  E-value=1.5e-09  Score=111.31  Aligned_cols=122  Identities=13%  Similarity=0.224  Sum_probs=99.4

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  ++.+++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+.       +.......+ 
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~-  259 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR-  259 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence            45666865  5899999999999999999999999999976 378999999999987543211       011222111 


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               ++ +++..++.+.++.++++.|.+++.|-..|+| |.|...|+||+.||++.++|
T Consensus       260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG  312 (413)
T PRK11573        260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence                     12 2578899999999999999999999999999 68999999999999999987

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.08  E-value=1.6e-09  Score=89.01  Aligned_cols=100  Identities=19%  Similarity=0.294  Sum_probs=84.2

Q ss_pred             EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (483)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (483)
                      +++.+++++.+|++.|.+.+.+.+||+++    +   +++|+++..++++...              .++          
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~--------------~~~----------   52 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENATY--------------GDV----------   52 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhcc--------------cch----------
Confidence            46789999999999999999999999942    4   8999999999875310              112          


Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                        .++|...+.++.++.++.++++.|.+++...+||+| +|+++|++|.+|++.
T Consensus        53 --~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          53 --VDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             --hhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence              233667788999999999999999999999999998 699999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.07  E-value=1.4e-09  Score=111.01  Aligned_cols=122  Identities=17%  Similarity=0.265  Sum_probs=104.7

Q ss_pred             cccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCC
Q 011558          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS  321 (483)
Q Consensus       247 ~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~  321 (483)
                      ++..+.+|+.|...++.+.++.|+.+|+..+.+.     .+..+.|+|.   ++   ++.|+++.++++..         
T Consensus       128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~a---------  192 (451)
T COG2239         128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLTA---------  192 (451)
T ss_pred             CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhcC---------
Confidence            3889999999999999999999999999999853     4678899965   44   89999999998641         


Q ss_pred             CCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          322 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       322 ~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                          ....+            +.++|.+.++++.++++.+++.+++.+++.-++||||++++++|++|..|++..+.+
T Consensus       193 ----~~~~~------------i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         193 ----EPDEL------------LKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             ----CcHhH------------HHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence                01233            344598899999999999999999999999999999999999999999999987664

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.05  E-value=2.7e-09  Score=88.05  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ....+.+++++.++.+.|.+.+...+||+++...+|   +++|+++..++.+....                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence            356789999999999999998888999994310035   89999999998775421                        


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                            +|.+++.++.+++++.++++.|.+++...+||++ +|+++|+++++|+.+
T Consensus        56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                  2666788999999999999999999999999995 789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.03  E-value=2.2e-09  Score=115.44  Aligned_cols=118  Identities=16%  Similarity=0.266  Sum_probs=96.8

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++..++++++++.++++.|.+++.+.+||+|+   ++   +++|+++.+|+++.+......       ...      
T Consensus       452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~~------  512 (574)
T PRK01862        452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TDK------  512 (574)
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------ccc------
Confidence            45677889999999999999999999999999964   45   899999999998755321100       011      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~di~~l~~  398 (483)
                            .+.++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|++|++|+++...
T Consensus       513 ------~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        513 ------TAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------hHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  2445588889999999999999999999999999999876  58999999999998654

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.01  E-value=2.8e-09  Score=103.53  Aligned_cols=108  Identities=16%  Similarity=0.226  Sum_probs=89.6

Q ss_pred             CCCCC-eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558          256 PCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       256 ~~~~~-~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      +|.++ +..+.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..|+++.+....        ....+    
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~----  221 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSE----  221 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCc----
Confidence            45666 889999999999999999999999999964   45   8999999999988643110        01222    


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  389 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit  389 (483)
                              +.++|.+++.++.+++++.+|+++|.+.+...+||+|++|+++|+|+
T Consensus       222 --------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       222 --------VRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             --------HHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                    44558888999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.00  E-value=3.6e-09  Score=88.95  Aligned_cols=113  Identities=12%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~-~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++.++.+++++.+|++.|.+++ .+.+||++  .  |   +++|+++..++++++......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd--~--~---~~~G~v~~~~l~~~~~~~~~~-----~~~-----------   58 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD--D--G---RPVGLIMREALMELLSTPYGR-----ALY-----------   58 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE--C--C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence            4567889999999999998877 88999994  3  4   899999999998765321100     000           


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ....+.++|..++..+.+++++.++++.|.+.+..   ..||++++|+++|+++..|+++
T Consensus        59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            01134556888899999999999999999988753   4578888899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.97  E-value=6.4e-09  Score=107.57  Aligned_cols=119  Identities=18%  Similarity=0.324  Sum_probs=98.6

Q ss_pred             cccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          343 IGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       343 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      ++++|.+  ++..++.+.++.++.+.+.+++++++||++ ..+.++|++..+|++.....+.. .     ......    
T Consensus       208 v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~----  277 (429)
T COG1253         208 VREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL----  277 (429)
T ss_pred             eeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc----
Confidence            4455764  688999999999999999999999999999 56789999999999986654321 0     111110    


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                              +  ++++.++++.++.+++++|.+.+.|-..|+| |.|.+.|+||+.||++.++|
T Consensus       278 --------~--~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         278 --------V--RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             --------c--cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence                    1  1578999999999999999999999999999 68999999999999999987

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.96  E-value=5.3e-09  Score=100.13  Aligned_cols=110  Identities=15%  Similarity=0.266  Sum_probs=94.8

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      ......+.+++++.+-.++-.+.+.+|+||+|.   ..   +++|++|.+|++..-             -+.+       
T Consensus       197 ~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~~-------------~~t~-------  250 (432)
T COG4109         197 LEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDKK-------------PSTT-------  250 (432)
T ss_pred             cccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcCC-------------CCcc-------
Confidence            356778899999999999999999999999965   33   899999999986521             1222       


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                           +..+|++++.++.+.+++..+.++|.=.++.-+||+|++.+++|++|++|+++.+.
T Consensus       251 -----ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         251 -----IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             -----HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence                 33459999999999999999999999999999999999999999999999998655

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.92  E-value=6.6e-09  Score=106.13  Aligned_cols=117  Identities=17%  Similarity=0.277  Sum_probs=100.3

Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  414 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~  414 (483)
                      ...++.+|+..++++.++.|+.+++..+++.     ....+.|+|++++++|+++.++++....          +..+.+
T Consensus       131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~  200 (451)
T COG2239         131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD  200 (451)
T ss_pred             hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH
Confidence            3456677999999999999999999999843     4578999999999999999999874211          234455


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          415 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       415 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                                   +|.+.++++.+++..+++.+.|.+++.-.+|||| ++++++|+||..|++..+
T Consensus       201 -------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi  252 (451)
T COG2239         201 -------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             -------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence                         6777799999999999999999999999999999 589999999999999865

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.92  E-value=2.3e-08  Score=82.22  Aligned_cols=104  Identities=22%  Similarity=0.376  Sum_probs=85.1

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      ++.++.+++++.+++..|.+.+.+.+||+++   .+   +++|+++..++++..    .         ..+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~---------   53 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQ---------   53 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cch---------
Confidence            4678889999999999999888899999954   34   799999999986420    0         011         


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                         +.++|..++.++..++++.++++.|.+.+...+||+|+ |+++|+++..|+++
T Consensus        54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence               22336677888999999999999999999999999984 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.90  E-value=1.3e-08  Score=87.83  Aligned_cols=113  Identities=20%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCC-Ccccc---ccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ  335 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~-~~~~~---~~v~~l~  335 (483)
                      .+.++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.......... ...+.   ..+.++.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            4678999999999999999999999999954   45   8999999999999875321110000 00000   0011110


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  381 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  381 (483)
                        . ...+.+.|..+++++.+++++.+|+++|.+++++.+||+|++
T Consensus        76 --~-~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 --T-KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             --h-hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence              0 001122345778899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK11573 hypothetical protein; Provisional

Probab=98.89  E-value=5.9e-08  Score=99.58  Aligned_cols=166  Identities=19%  Similarity=0.207  Sum_probs=122.6

Q ss_pred             hccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 011558          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (483)
Q Consensus       152 l~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~  231 (483)
                      |+..++.|+|-+-.+++.++.+.|+.++++.+.+++.+..||++.+..+++|++...|++..+..    ....       
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~-------  252 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF-------  252 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC-------
Confidence            35788999999999999999999999999999999999999999887899999999999864321    0111       


Q ss_pred             ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (483)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~  311 (483)
                       ....+.+                 ..+++..+++++++.++++.|.+++.|-..|+|+   -|   ...|+||..||+.
T Consensus       253 -~~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilE  308 (413)
T PRK11573        253 -TKENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILE  308 (413)
T ss_pred             -CHHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHH
Confidence             1111111                 1356788999999999999999999999999965   45   6899999999999


Q ss_pred             HHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHH
Q 011558          312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (483)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  367 (483)
                      .+.........  ......+....             .....++...++.++.+.+
T Consensus       309 eivGei~de~d--~~~~~~i~~~~-------------~~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        309 EIVGDFTTSMS--PTLAEEVTPQN-------------DGSVIIDGTANVREINKAF  349 (413)
T ss_pred             HHhCCCCcccC--cccccceEEec-------------CCEEEEEeeeEHHHHHHHh
Confidence            88754332110  00001122221             2345678888888888776

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.88  E-value=5.6e-09  Score=75.83  Aligned_cols=54  Identities=28%  Similarity=0.409  Sum_probs=50.5

Q ss_pred             cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      +|.++++++.+++++.++++.|.+++++++||+| ++|+++|+||.+||+++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence            6777899999999999999999999999999999 57999999999999999863

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.87  E-value=5.9e-09  Score=75.70  Aligned_cols=56  Identities=30%  Similarity=0.519  Sum_probs=51.8

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      |+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++.+.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            35679999999999999999999999999999999999999999999999998653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.86  E-value=2.4e-08  Score=104.60  Aligned_cols=114  Identities=12%  Similarity=0.234  Sum_probs=90.4

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.+++.++.+++++.+|++.|.+++++.+||+++   ++   +++|+||..|+++.+......       ...      
T Consensus       340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~------  400 (454)
T TIGR01137       340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKAN-------PDD------  400 (454)
T ss_pred             hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCCC-------cCC------
Confidence            46778999999999999999999999999999954   45   899999999998866421100       111      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                            .+.++|.+++.++.+++++.+++++|.+++   .|+|+++++++|+||++||++.+
T Consensus       401 ------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 ------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                  234458888889999999999999998754   35555579999999999998753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.74  E-value=4.3e-08  Score=76.84  Aligned_cols=74  Identities=31%  Similarity=0.465  Sum_probs=60.2

Q ss_pred             EEEEEecCC-CceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCC-ceEEEEEEEcCeeeeCCCCCeeeCCCCCee
Q 011558           22 PVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGNYGVVN   97 (483)
Q Consensus        22 ~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~-g~~~ykf~vdg~w~~d~~~~~~~~~~g~~n   97 (483)
                      .++|++..+ +++|.|.+.|++|....+|.+.+  +|.|++.+++.. |.|.|+|+++|.|.+++.++...+.....+
T Consensus         5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~   80 (83)
T cd02688           5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSGDS   80 (83)
T ss_pred             cEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcccc
Confidence            577877554 79999999999976668998876  699999999998 999999999999999997765554443333

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.65  E-value=5.6e-07  Score=88.01  Aligned_cols=167  Identities=16%  Similarity=0.191  Sum_probs=119.5

Q ss_pred             HcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCe
Q 011558          185 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL  261 (483)
Q Consensus       185 e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~  261 (483)
                      .+.....|++.+    ...-+|..+.+-.+..+.-.+   .+-+.+ .....+..|+.....+             ..++
T Consensus        57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g~-------------~~~p  118 (503)
T KOG2550|consen   57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENGF-------------INNP  118 (503)
T ss_pred             hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhccc-------------ccCC
Confidence            344556688765    455678888887665544221   223322 2222344555443322             2456


Q ss_pred             EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (483)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (483)
                      +.+.|+.++.++++.-..+++..+||.....-.   ++++|+||-+|| .++-.+           ...           
T Consensus       119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi-~f~~~~-----------~~~-----------  172 (503)
T KOG2550|consen  119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDI-QFLEDN-----------SLL-----------  172 (503)
T ss_pred             cccCCcccchhhhhhcccccccccccccCCccc---ceeEEEEehhhh-hhhhcc-----------cch-----------
Confidence            789999999999999889999999999543333   399999999996 444111           122           


Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                       +.++|.+..++.....++.++-+++.+.+...+||||++|.++.++++.||.+.
T Consensus       173 -~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  173 -VSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence             344588888899999999999999999999999999999999999999999873

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.65  E-value=4.7e-07  Score=91.24  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=90.8

Q ss_pred             CCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcc
Q 011558          348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  427 (483)
Q Consensus       348 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~  427 (483)
                      ........++.+..++++.|...+...+.|+|+++++.|.++.+++.......         ..+.+             
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------  306 (363)
T TIGR01186       249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------  306 (363)
T ss_pred             cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------
Confidence            33444566777899999999999999999999999999999999987755422         12333             


Q ss_pred             cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .+...+.++.++++|.+++..|.+++.. +|||| ++|+++|+||..+|+++|.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       307 VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            2223467899999999999999999998 99999 58999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.64  E-value=1.1e-07  Score=86.45  Aligned_cols=120  Identities=14%  Similarity=0.361  Sum_probs=100.2

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +|+|+|.+  ..+++..+.++.+++..+.+...|++||+.+ .+.+.|++-..||++++.....      .+.+.+.|  
T Consensus        68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL--  139 (293)
T COG4535          68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL--  139 (293)
T ss_pred             hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc--
Confidence            34455654  4788999999999999999999999999975 5689999999999997653321      14556644  


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                  +|.+.++.+-.+...++-|...+.|...||| +-|-+-|.||..||+..++|
T Consensus       140 ------------RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         140 ------------RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             ------------ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence                        3577889999999999999999999999999 68999999999999999987

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=6.6e-07  Score=91.31  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=86.8

Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCCcc
Q 011558          354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC  433 (483)
Q Consensus       354 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~  433 (483)
                      ..++.+..+++..|...+.+.+.|+|++++++|+++..++.......         .++.+.+             ....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence            34667889999999999999999999999999999999997654422         1233322             2346


Q ss_pred             eEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          434 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       434 ~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .++.++++|.+++..|.++... +|||| ++|+++|+||..++++.|.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            7899999999999999998776 99999 58999999999999999854

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.58  E-value=1.8e-06  Score=89.39  Aligned_cols=136  Identities=21%  Similarity=0.352  Sum_probs=109.3

Q ss_pred             HHHHHHhh--ccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCC
Q 011558          145 RDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (483)
Q Consensus       145 ~~~~~~fl--~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~  222 (483)
                      +.-|+..|  .++++-+.|-.-..++.++.+.++.++.+.+.+++.+..||++.....++|++...|++..+.....   
T Consensus       194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---  270 (429)
T COG1253         194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---  270 (429)
T ss_pred             HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence            34444443  5788999999889999999999999999999999999999999777899999999999865532100   


Q ss_pred             CCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 011558          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (483)
Q Consensus       223 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~G  302 (483)
                      ...        ..      .              .-++++.+++.+++.++++.|.+.+.|...|+|+   -|   .+.|
T Consensus       271 ~~~--------~~------~--------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~G  316 (429)
T COG1253         271 DLD--------LR------V--------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEG  316 (429)
T ss_pred             ccc--------hh------h--------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEE
Confidence            000        00      0              0237889999999999999999999999999965   45   6999


Q ss_pred             EechhhHHHHHHhhc
Q 011558          303 LASLSDILKCICRHF  317 (483)
Q Consensus       303 iit~~dIl~~l~~~~  317 (483)
                      ++|..||+..+....
T Consensus       317 lVTleDIiEeIvGei  331 (429)
T COG1253         317 LVTLEDIIEEIVGEI  331 (429)
T ss_pred             EeEHHHHHHHHhCCC
Confidence            999999999987543

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.52  E-value=4.5e-07  Score=73.66  Aligned_cols=66  Identities=27%  Similarity=0.554  Sum_probs=49.2

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc--------CCc-eEEEEEEE-cCee--eeCCCCCe
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQPH   88 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l--------~~g-~~~ykf~v-dg~w--~~d~~~~~   88 (483)
                      ++|+ |...|++|+|+|+||+|++. .+|.+.+  .|.|++.++.        +.| .|+|++.. ||+|  +.||-...
T Consensus         7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~   84 (99)
T cd02854           7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY   84 (99)
T ss_pred             EEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence            5565 56679999999999999874 6899875  8999999875        345 56666666 7875  57775554


Q ss_pred             ee
Q 011558           89 VS   90 (483)
Q Consensus        89 ~~   90 (483)
                      +.
T Consensus        85 ~~   86 (99)
T cd02854          85 VT   86 (99)
T ss_pred             EE
Confidence            44

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.47  E-value=9.7e-07  Score=85.80  Aligned_cols=121  Identities=14%  Similarity=0.285  Sum_probs=100.0

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccc-ccccccCCccHHHHHh
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ  417 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~-~~~~~l~~~~v~~~l~  417 (483)
                      +|.|+|.+  .+..+..+++.+++.+.+....+.++|+-.+ -+.++|++..+|+++++.++. +..     ..+..++ 
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a-  274 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA-  274 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence            56677854  5888999999999999999999999999954 356999999999999887553 221     2223222 


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                   .++.+++.++++.+-+..|.+++-|--.||| |-|.+.|+||+.||++-++|
T Consensus       275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence                         1467899999999999999999999999999 69999999999999999886

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.43  E-value=4.5e-07  Score=93.05  Aligned_cols=135  Identities=20%  Similarity=0.325  Sum_probs=105.0

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhccccccc-----cc---C
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQI-----HL---D  408 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGiit~~di~~l~~~~~~~~~-----~l---~  408 (483)
                      .++|+|+++++++..-+.+....+.+.....+.+||+|+.     +++.|+|-++.++.+++++.+...     .+   .
T Consensus       583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            5679999999999999999999999999999999999962     578999999999998875544311     00   1


Q ss_pred             CccHHHHHhcCC---------------CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeh
Q 011558          409 EMNIHQALQLGQ---------------DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL  473 (483)
Q Consensus       409 ~~~v~~~l~~~~---------------~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~  473 (483)
                      ..+.+++..+..               .+..|  +|...++++..++++..+..+|.+-+.|++.||. ..++++|++|+
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p--~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR  739 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHP--FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTR  739 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhcccccc--ccCCCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEeh
Confidence            122222222110               00111  6888899999999999999999999999999999 46888999999


Q ss_pred             HHHHHH
Q 011558          474 SDVFRF  479 (483)
Q Consensus       474 ~DIl~~  479 (483)
                      +|+.++
T Consensus       740 ~D~~~~  745 (762)
T KOG0474|consen  740 KDLARY  745 (762)
T ss_pred             hhhhhH
Confidence            999854

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.41  E-value=4.4e-06  Score=81.35  Aligned_cols=131  Identities=21%  Similarity=0.307  Sum_probs=107.2

Q ss_pred             ccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhc
Q 011558          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (483)
Q Consensus       153 ~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~  232 (483)
                      ..-|+.|+|-.-+.++.+|.+++.++.++.+...-...+|||..+..+.+||+...|++.++....    +.+.+++   
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~d~---  270 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKEDI---  270 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHhHH---
Confidence            356899999888999999999999999999999999999999988889999999999887775321    1322322   


Q ss_pred             cHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHH
Q 011558          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (483)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~  312 (483)
                           .   +.              ..+++.++..+++.+-+..+.+++-|-..|+|+   =|   .+.|++|.+||+.-
T Consensus       271 -----~---~~--------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEE  322 (423)
T COG4536         271 -----L---RA--------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEE  322 (423)
T ss_pred             -----H---HH--------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHH
Confidence                 1   11              246788999999999999999999888889965   45   79999999999998


Q ss_pred             HHhhcc
Q 011558          313 ICRHFK  318 (483)
Q Consensus       313 l~~~~~  318 (483)
                      +...+.
T Consensus       323 IVGdft  328 (423)
T COG4536         323 IVGDFT  328 (423)
T ss_pred             Hhcccc
Confidence            865443

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.40  E-value=2e-06  Score=78.45  Aligned_cols=118  Identities=11%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      ++++..++++..+.++.+++..+.+...+|+||+.++  .   +.+.||+-.+|+|+++......         ..+++ 
T Consensus        73 MIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--k---D~v~GIL~AKDLL~~~~~~~~~---------F~i~~-  137 (293)
T COG4535          73 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--K---DHVEGILLAKDLLPFMRSDAEP---------FDIKE-  137 (293)
T ss_pred             cccHHHheeccccCCHHHHHHHHHHhccccCCcccCC--c---hhhhhhhhHHHHHHHhcCCccc---------ccHHH-
Confidence            4667789999999999999999999999999999542  2   2799999999999987432111         11222 


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                                  +-+|.+.++++-.+...++-++.++.+-..|+|+-|.+-|++|..|++..+-.
T Consensus       138 ------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         138 ------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             ------------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence                        23577889999999999999999999999999999999999999999986653

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.33  E-value=1.2e-06  Score=85.86  Aligned_cols=107  Identities=19%  Similarity=0.282  Sum_probs=90.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558          350 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  426 (483)
Q Consensus       350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  426 (483)
                      +++.+.++.++.++++....++++.+||..+   ..+++|+||.+|+-.+ .+.        ...+.+            
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence            5677899999999999999999999999964   4689999999999776 211        133444            


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          427 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       427 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                       +|..+.++...+.+|.++-+++.+++-..+|||| ++|.++.+|+++|+.+.
T Consensus       176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence             6666678888899999999999999999999999 58999999999999874

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.27  E-value=1.4e-05  Score=80.67  Aligned_cols=108  Identities=11%  Similarity=0.222  Sum_probs=87.5

Q ss_pred             EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (483)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (483)
                      ....++.+..+++..|...+...+.|++.   .+   ++.|.++..++.+++...            ..+          
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~----------  304 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QGL----------  304 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cch----------
Confidence            45667788999999999999999999954   34   799999999987765321            111          


Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~  400 (483)
                        .+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+...
T Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       305 --QDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             --hhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence              222555677899999999999999999988 99999999999999999999876543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.24  E-value=6e-07  Score=70.94  Aligned_cols=57  Identities=32%  Similarity=0.681  Sum_probs=44.4

Q ss_pred             EEEEE-ecCCCceEEEEeccCC-CCCC-CCCCc-CCCCCCeEEEEEE--cCCceEEEEEEEcCee
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTR-WSEP-MPMSP-SEGCPAVFQIICR--LPPGHHQYKFYVDGEW   80 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~-W~~~-~~m~~-~~~~~~~~~~~~~--l~~g~~~ykf~vdg~w   80 (483)
                      .++|+ |...|++|.|++.|++ |... ++|.+ .+  +|+|+++++  +++|.++|+|+|+|..
T Consensus        12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            35554 5667999999999999 8754 69984 44  899999999  8889888888887664

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.13  E-value=2.8e-05  Score=79.41  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=84.6

Q ss_pred             eCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccc
Q 011558          264 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  343 (483)
Q Consensus       264 v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v  343 (483)
                      ..++.+..+|+..|...+...+.|+|.   ++   +++|+++..++.+.....            ..+.           
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~-----------  340 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGLD-----------  340 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cchh-----------
Confidence            446778999999999999999999965   45   899999999987654211            1111           


Q ss_pred             ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                       +.+.....++.+++++.+++..+.+.... +||+|++|+++|+|++.++++.+..
T Consensus       341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        341 -AALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             -hhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence             22445677899999999999999987765 9999999999999999999996653

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.94  E-value=1.9e-05  Score=65.96  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=49.3

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+||.+
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            456678889999999999999999999999999999999899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.89  E-value=6.3e-05  Score=60.70  Aligned_cols=54  Identities=28%  Similarity=0.482  Sum_probs=42.7

Q ss_pred             eEEEEEecC---CCceEEEEec---cCCCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      |+++|..++   .|.+|+|+|+   |.+|++.  .+|....  .+.|++++.||+| .++|||++
T Consensus         1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence            356666643   4789999995   7899864  5887765  6889999999987 69999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.82  E-value=5.7e-05  Score=51.49  Aligned_cols=47  Identities=28%  Similarity=0.483  Sum_probs=42.6

Q ss_pred             ceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          433 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       433 ~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                      +.++.+++++.++++.|.+.+.+++||++ ++++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence            45789999999999999999999999999 468999999999998875

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.77  E-value=5.1e-05  Score=61.41  Aligned_cols=56  Identities=29%  Similarity=0.561  Sum_probs=46.3

Q ss_pred             eEEEEEecC---CCceEEEEeccC---CCCC--CCCCCcCCC--CCCeEEEEEEcCCc-eEEEEEEE
Q 011558           21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~~~---~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +.|+|...+   .++.|+|+|+..   +|++  .++|...+.  ....|++++.||.| .++|||++
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            678888743   488999999998   8997  568887642  36899999999998 69999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.74  E-value=7.3e-05  Score=62.38  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=45.4

Q ss_pred             cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                      +|.+++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence            5666788999999999999999999999999999 4799999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.74  E-value=9.2e-05  Score=60.40  Aligned_cols=64  Identities=20%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             EEE-EecCCCceEEEEeccCCCC-----CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe-----eeeCCCCCeee
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVS   90 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~~~   90 (483)
                      ++| +|...|++|.|.. |++|.     ..++|.+.+  +|+|++.++ +.+|. .|+|.|+|.     ...||....+.
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~   85 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS   85 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence            567 5677799999998 88886     346888754  899999887 44454 488888876     67888666555

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.71  E-value=6.4e-05  Score=77.65  Aligned_cols=141  Identities=15%  Similarity=0.225  Sum_probs=103.3

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhh-cc-CCCC--CCccc---
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FK-HSSS--SLPIL---  327 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~-~~-~~~~--~~~~~---  327 (483)
                      .+++++++++..-+.+...++.+.....+.+||+|+...+ ....+.|+|-.+.++..+.+. +. +...  ..+..   
T Consensus       586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~-~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~  664 (762)
T KOG0474|consen  586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN-EAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKF  664 (762)
T ss_pred             hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCc-cchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcC
Confidence            4678899999999999999999999999999999763321 123789999999988877432 11 1000  00000   


Q ss_pred             --------ccccccccccccc----cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          328 --------QQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       328 --------~~~v~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                              ..+++++.+....    .....+|.+.+.++.+++++..++.++++-+.+++.||++..+.+|++|++|+..
T Consensus       665 ~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  665 TFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLAR  744 (762)
T ss_pred             CHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhh
Confidence                    1123333222111    1234578888999999999999999999999999999999889999999999986


Q ss_pred             H
Q 011558          396 L  396 (483)
Q Consensus       396 l  396 (483)
                      .
T Consensus       745 ~  745 (762)
T KOG0474|consen  745 Y  745 (762)
T ss_pred             H
Confidence            3

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.58  E-value=0.00024  Score=48.27  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=42.2

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                      +.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45788999999999999999999999999889999999999997643

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.55  E-value=0.00047  Score=55.25  Aligned_cols=53  Identities=25%  Similarity=0.415  Sum_probs=42.9

Q ss_pred             eEEEEEecCC---CceEEEEeccC---CCCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           21 VPVRFIWPNG---GRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~~~~---~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +.++|...+.   |.+++|+|+-.   +|++..+|...   .+.|++.+.+|+| .++|||++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence            5667776553   88999999875   89987788765   3569999999998 69999998

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.53  E-value=0.00085  Score=54.97  Aligned_cols=64  Identities=30%  Similarity=0.587  Sum_probs=48.1

Q ss_pred             ceEEEEEecC-----CCceEEEEeccC---CCCCCC-----CCCcCCCCCCeEEEEEEcCCc-eEEEEEEE---cCe--e
Q 011558           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV---DGE--W   80 (483)
Q Consensus        20 ~~~~~f~~~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v---dg~--w   80 (483)
                      .+||+|+...     .|.+++|+|+-.   +|++..     +|....  ...|++++.||.| ..+|||++   ||.  |
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~--~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W   79 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPN--WPDWFVVASVPAGTYIEFKFLKAPADGTGTW   79 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCC--CCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence            4899999853     378999999876   899732     665433  5679999999998 59999998   443  6


Q ss_pred             eeCCC
Q 011558           81 RHDEN   85 (483)
Q Consensus        81 ~~d~~   85 (483)
                      ...++
T Consensus        80 E~g~N   84 (103)
T cd05820          80 EGGSN   84 (103)
T ss_pred             EeCCC
Confidence            54443

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.47  E-value=0.00089  Score=54.45  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=43.2

Q ss_pred             ceEEEEEecC----CCceEEEEe---ccCCCCCCC-CCCcCC-CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        20 ~~~~~f~~~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      .|||+|....    .|.+|+|+|   ++.+|++.. +|.... ...+.|++++.||+| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4899999743    378999999   677998742 343322 225789999999998 59999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.00022  Score=75.63  Aligned_cols=66  Identities=32%  Similarity=0.665  Sum_probs=50.1

Q ss_pred             eEEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe-----eeeCCCCCe
Q 011558           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPH   88 (483)
Q Consensus        21 ~~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~   88 (483)
                      -.++|+ |...++.|.|.|+||+|+.. .+|.... ..|+|+++++ +++| ++|||.+++.     |+.||..-.
T Consensus        36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~  109 (628)
T COG0296          36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARR  109 (628)
T ss_pred             CceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhc
Confidence            356675 67789999999999999973 3555433 3799999999 9999 9999999654     256654433

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.46  E-value=0.00079  Score=55.31  Aligned_cols=64  Identities=25%  Similarity=0.464  Sum_probs=42.1

Q ss_pred             ecCCCceEEEEeccCCCCC-CCCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEEc-Ce--eeeCCCCCeeeC
Q 011558           27 WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GE--WRHDENQPHVSG   91 (483)
Q Consensus        27 ~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~--w~~d~~~~~~~~   91 (483)
                      |..+|++|.|.++|++|.. ..+|.+.+. .|.|.+.++ +++| .|+|++..+ |.  .+.||....++.
T Consensus        28 ~aP~A~~V~l~~~~~~~~~~~~~m~~~~~-~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~   97 (106)
T cd02855          28 WAPNARRVSVVGDFNGWDGRRHPMRRRGD-SGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL   97 (106)
T ss_pred             ECCCCCEEEEEEECCCCCCcceecEECCC-CCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence            6667999999999999965 358887543 799998886 5556 444444433 33  344554444443

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.001  Score=69.13  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=87.9

Q ss_pred             eeEecCC-CCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCC----CCC
Q 011558          351 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ----DAN  423 (483)
Q Consensus       351 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~----~~~  423 (483)
                      ..++..+ .++.+...+|.+..++.+||+-  +..+++|++.++|+...+..-..........+. ...+...    ...
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP  636 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence            5555554 8999999999999999999884  356899999999987643311000000000111 0000000    001


Q ss_pred             CCc---ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          424 PSL---GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       424 ~~~---~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                      .+.   .+|...++++....+...+++++.+-+.+.+.|..  +|++.|+||..|++++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            122   26777889999999999999999999998887776  79999999999999875

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.38  E-value=0.00086  Score=56.61  Aligned_cols=55  Identities=25%  Similarity=0.539  Sum_probs=43.1

Q ss_pred             EEEEecC----CCceEEEEec---cCCCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEc
Q 011558           23 VRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD   77 (483)
Q Consensus        23 ~~f~~~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd   77 (483)
                      ++|...+    .++.|+|+|+   +.+|++.  .+|.......+.|++.+.||++ .++|||++.
T Consensus         3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814           3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            4555544    4889999999   8899853  5887762226789999999998 799999994

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.36  E-value=0.00064  Score=55.72  Aligned_cols=54  Identities=20%  Similarity=0.442  Sum_probs=40.8

Q ss_pred             EEE-EecCCCceEEEEeccCCCC--CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w   80 (483)
                      ++| +|...|++|.|.. |++|.  ..++|.+.+  +|+|.+.++ +.+|. .|+|.|||.|
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~~   68 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGPY   68 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCcc
Confidence            456 5676799999999 77665  235887765  799999985 55554 7999999943

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.18  E-value=0.00086  Score=73.10  Aligned_cols=63  Identities=24%  Similarity=0.439  Sum_probs=46.1

Q ss_pred             EEE-EecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc-------CCceEEEEEEEc---Ce--eeeCCCCCe
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQPH   88 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-------~~g~~~ykf~vd---g~--w~~d~~~~~   88 (483)
                      ++| .|.+.|++|+|.|+||+|+.. .+|.+.+  .|+|++.++-       +.| ..|||.|.   |.  ++.||-...
T Consensus       116 ~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~~  192 (758)
T PLN02447        116 ITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIKY  192 (758)
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHhe
Confidence            445 477789999999999999874 5998866  7999998874       334 36777773   54  467774443

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.12  E-value=0.0031  Score=51.93  Aligned_cols=59  Identities=25%  Similarity=0.502  Sum_probs=44.5

Q ss_pred             CcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCcCC--CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +..++|+|...+   .|..|+|+|+-.   +|++.  .+|....  ...+.|++.+.||++ .++|||++
T Consensus         4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            345778887754   388999999866   79863  5776532  124789999999998 59999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.11  E-value=0.0012  Score=71.89  Aligned_cols=65  Identities=26%  Similarity=0.582  Sum_probs=48.1

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEE---cCeee--eCCCCCee
Q 011558           22 PVRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEWR--HDENQPHV   89 (483)
Q Consensus        22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w~--~d~~~~~~   89 (483)
                      -|+| +|...|++|+|+|+||+|+.. .||.+..  .|+|++.++ +.+| ..|||.|   ||.|.  .||-....
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~--~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~  211 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRI--GGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT  211 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccCC--CCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence            4677 456679999999999999864 5898753  899999985 5666 4677777   78764  67755443

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0086  Score=62.50  Aligned_cols=134  Identities=13%  Similarity=0.146  Sum_probs=94.1

Q ss_pred             CeEEeCCC-CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCC---CCCccccccccccc
Q 011558          260 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS---SSLPILQQPVSSIQ  335 (483)
Q Consensus       260 ~~v~v~~~-~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~---~~~~~~~~~v~~l~  335 (483)
                      ++..+..+ +++.|...+|.+...+..||+-+ .+..   .++|++..+++...+........   .....++.+..+..
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666555 89999999999999999999843 2233   89999999998877642211100   00001222222221


Q ss_pred             ccc-cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGT-WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~-~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      -+. .....+++|...+.++...++.+-+++++++-+.+.+.|. ++|++.|+||.+|+++..+
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR  695 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence            111 1124567788889999999999999999999999988776 5899999999999987543

>PRK12313 glycogen branching enzyme; Provisional

Probab=96.97  E-value=0.0019  Score=70.44  Aligned_cols=67  Identities=22%  Similarity=0.365  Sum_probs=47.5

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEE-cCee--eeCCCCCeee
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS   90 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~v-dg~w--~~d~~~~~~~   90 (483)
                      .|+|+ |...|++|+|+|+||+|++. .+|.+..  .|+|++.++ +.+| .|+|++.. +|.|  +.||......
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~  112 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE  112 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence            46664 45569999999999999874 5888764  799999988 4444 56666644 5665  4555444443

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.95  E-value=0.0049  Score=50.27  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=42.5

Q ss_pred             ceEEEEEec-C---CCceEEEEeccC---CCCCCC--CCCcC--CCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           20 LVPVRFIWP-N---GGRRVSLSGSFT---RWSEPM--PMSPS--EGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        20 ~~~~~f~~~-~---~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      .++++|... .   .|.+|+|+|+-.   +|++..  .|...  ......|++.++||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            478899874 2   388999999876   898643  23211  1235679999999998 69999998

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.94  E-value=0.0027  Score=51.12  Aligned_cols=54  Identities=20%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             eEEEEEecC----CCceEEEEeccC---CCCCCCCCCcCCCCCCeEEEEEEcCCce-EEEEEEE
Q 011558           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~~~----~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g~-~~ykf~v   76 (483)
                      |+|+|...+    ++..++|+|+=.   +|+...+|....  .+.|++.+.||++. ++|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence            356666533    457788999765   799878997654  57899999999984 9999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.0032  Score=66.74  Aligned_cols=62  Identities=16%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHh
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAK  398 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~di~~l~~  398 (483)
                      +.+...|.++|.+++.++..+++..|..+.+....++.+|+||+  +..++|.|.++.|..++.
T Consensus       584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            44556789999999999999999999999888777999999985  457999999999988765

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.76  E-value=0.0025  Score=73.01  Aligned_cols=62  Identities=26%  Similarity=0.596  Sum_probs=45.5

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc---Cee--eeCCC
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDEN   85 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd---g~w--~~d~~   85 (483)
                      -|+|. |...|++|+|+|+||+|+.. .+|.+.. ..|+|++.++ +.+|. .|||.|.   |.|  +.||.
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPy  708 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPL  708 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcc
Confidence            45664 67779999999999999864 5887743 3699999886 67775 6888884   555  45553

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.74  E-value=0.0034  Score=68.04  Aligned_cols=65  Identities=31%  Similarity=0.613  Sum_probs=47.6

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc-CCceEEEEEEEcC---ee--eeCCCCCee
Q 011558           22 PVRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHV   89 (483)
Q Consensus        22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vdg---~w--~~d~~~~~~   89 (483)
                      -++| +|...|++|.|+|+||+|+.. .||.+.+  .|+|++.++- .+| ..|||.|++   .+  +.||.....
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~  111 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF  111 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence            3566 456679999999999999864 5898875  6999998864 444 478888854   43  666655443

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.74  E-value=0.0048  Score=51.96  Aligned_cols=60  Identities=25%  Similarity=0.518  Sum_probs=43.3

Q ss_pred             EEE-EecCCCceEEEEeccCCCC---C--CCCCCcCC-CCCCeEEEEEE-cCCceEEEEEEEcCeeeeCC
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHDE   84 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-l~~g~~~ykf~vdg~w~~d~   84 (483)
                      ++| .|...|++|.|+. |++|+   +  .++|.+.+ +..|+|.+.++ +.+|. .|+|.|+|.|..++
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~   76 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ   76 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence            556 5677799999999 99886   2  24676543 23699998876 55675 79999999765443

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.73  E-value=0.014  Score=47.36  Aligned_cols=45  Identities=18%  Similarity=0.426  Sum_probs=37.1

Q ss_pred             CCceEEEEeccC---CCCCC--CCCCcCCCCCCeEEEEEEcCCc--eEEEEEEE
Q 011558           30 GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV   76 (483)
Q Consensus        30 ~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g--~~~ykf~v   76 (483)
                      .+.+++|+|+-.   +|++.  .+|....  ...|++.+.+|++  .++|||++
T Consensus        13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816          13 KGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             CCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence            488999999864   89863  5887765  6789999999986  58999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.71  E-value=0.0065  Score=61.83  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=72.5

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      ++.++|.+.......+.+  .+++.   ++.+.+.|+|+     |+++..+...+.....       ..++.+ +     
T Consensus       275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-----  331 (382)
T TIGR03415       275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-----  331 (382)
T ss_pred             eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence            445668443333333322  44443   78889999985     8888777655443111       112222 1     


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                              .....++++++++.+++..+.+.+.. ++|+| + |+++|+|+..+++.+|.+
T Consensus       332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence                    12466889999999999999988864 88998 4 999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.68  E-value=0.0085  Score=48.77  Aligned_cols=45  Identities=24%  Similarity=0.498  Sum_probs=37.3

Q ss_pred             CCceEEEEec---cCCCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           30 GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        30 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      .|..++|+|+   .-+|++.  .+|....  ...|++++.+|+| .++|||++
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence            4789999999   5589964  5787655  5789999999987 59999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.62  E-value=0.016  Score=46.88  Aligned_cols=54  Identities=22%  Similarity=0.407  Sum_probs=41.9

Q ss_pred             eEEEEEec----CCCceEEEEeccC---CCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           21 VPVRFIWP----NGGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~~----~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      |+|+|.-.    ..+..++|+|+-.   +|++.  ++|....  ...|++.+.||.| ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTA--YPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCC--CCeEEEEEEcCCCCeEEEEEEE
Confidence            46777732    2478899999877   89963  4776543  6789999999998 69999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.59  E-value=0.0077  Score=48.45  Aligned_cols=47  Identities=23%  Similarity=0.467  Sum_probs=38.1

Q ss_pred             CCCceEEEEeccC---CCCC--CCCCCcCCCCCCeEEEEEEcCC--c-eEEEEEEE
Q 011558           29 NGGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV   76 (483)
Q Consensus        29 ~~~~~V~l~Gsf~---~W~~--~~~m~~~~~~~~~~~~~~~l~~--g-~~~ykf~v   76 (483)
                      ..|..++|+|+..   +|++  .++|...+ ..+.|++.+.+|+  | .++|||++
T Consensus        11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            3488999999987   8985  35787654 2578999999999  7 69999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.53  E-value=0.0059  Score=67.64  Aligned_cols=65  Identities=28%  Similarity=0.470  Sum_probs=45.2

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEEc-Cee--eeCCCCC
Q 011558           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQP   87 (483)
Q Consensus        22 ~~~f~~-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~w--~~d~~~~   87 (483)
                      .|+|+. ...|++|+|+|+||+|+.. .+|.+.. ..|.|++.++ +++| .|+|++..+ |.|  ..||-.-
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~  203 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAF  203 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceE
Confidence            456655 5569999999999999864 5898762 2799998886 5666 566666654 454  4444333

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.48  E-value=0.0046  Score=59.79  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHH-----HHhhccCCCCCCccccccccccccccccccc
Q 011558          269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC-----ICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  343 (483)
Q Consensus       269 sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~-----l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v  343 (483)
                      .|.||+++     -+++.+..    +|   +++-+=|..+|+..     +..+.+.              +.. ...-++
T Consensus       224 DLdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~--------------v~~-~~VltA  276 (386)
T COG4175         224 DLDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPANDYVRDFVRN--------------VDR-SRVLTA  276 (386)
T ss_pred             CHHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHHHHHHHHhc--------------CCh-hheeeH
Confidence            46666553     14566663    46   78888899888752     2222111              100 001134


Q ss_pred             ccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          344 GEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       344 ~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      .++|.+  ....-.+...-..++..+.....+.+.+++..++.+|+++..++....                        
T Consensus       277 ~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------------------  332 (386)
T COG4175         277 KDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA------------------------  332 (386)
T ss_pred             HHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc------------------------
Confidence            556763  222222222334677888887777777888777899999998876530                        


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                             +..++.++..++++.+.+..+.+.... ++||| ++++++|+|++..++.+|.+
T Consensus       333 -------~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         333 -------LIDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             -------ccccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence                   011466788999999999999888874 88999 68999999999999999875

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.41  E-value=0.01  Score=46.64  Aligned_cols=62  Identities=23%  Similarity=0.359  Sum_probs=44.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEc-CeeeeCCCCCeee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS   90 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vd-g~w~~d~~~~~~~   90 (483)
                      ++|. |...|++|.|....  |. ..+|.+.+  +|+|++.+.--+|. .|+|.|+ +..+.||......
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~   73 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP   73 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence            4554 67679999999743  54 47898765  89999998744665 5777776 4588888776543

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.25  E-value=0.008  Score=64.20  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             EEE-EecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcC-eeeeCCCCCeeeCCCCCeeeE
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVSGNYGVVNCV   99 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg-~w~~d~~~~~~~~~~g~~nn~   99 (483)
                      |+| .|...|++|.|.+.   +. ..+|.+.+  +|+|+++++ +.+| +.|+|.||| ..+.||.......+. +-.++
T Consensus         1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~~-~~~S~   72 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDGV-HGPSQ   72 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---CC-EEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccCC-CCCeE
Confidence            356 47778999999973   33 47998876  799999987 6677 789999999 678888777654331 22355


Q ss_pred             EEe
Q 011558          100 YIA  102 (483)
Q Consensus       100 ~~v  102 (483)
                      +..
T Consensus        73 V~d   75 (542)
T TIGR02402        73 VVD   75 (542)
T ss_pred             Eec
Confidence            543

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.04  E-value=0.091  Score=43.48  Aligned_cols=51  Identities=22%  Similarity=0.415  Sum_probs=38.5

Q ss_pred             EecCCCceEEEEeccC---CCCCC--CCCCcCC-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 011558           26 IWPNGGRRVSLSGSFT---RWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV   76 (483)
Q Consensus        26 ~~~~~~~~V~l~Gsf~---~W~~~--~~m~~~~-----~~~~~~~~~~~l~~g----~~~ykf~v   76 (483)
                      +.-..+.+++|+|+=.   +|++.  .+|....     ..+..|+++++||+|    .++|||+.
T Consensus        10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            4455788999999755   89864  4676541     124579999999996    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.86  E-value=0.018  Score=45.46  Aligned_cols=61  Identities=23%  Similarity=0.480  Sum_probs=37.5

Q ss_pred             EEEEEecC------CCceEEEEeccCCCCCC--CCCCcCC--CCCCeEEEEEEcCCceEEEEEEE-cC--eeee
Q 011558           22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH   82 (483)
Q Consensus        22 ~~~f~~~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~v-dg--~w~~   82 (483)
                      +|++.|..      ++.+|++.+.|++|+..  .+|.+..  ...+.|++++.+|..-|+..|+. ||  .|-.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN   76 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN   76 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence            46666633      36789999999999864  3565542  12689999999999988999988 65  4643

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PRK05402 glycogen branching enzyme; Provisional

Probab=95.76  E-value=0.015  Score=64.39  Aligned_cols=60  Identities=12%  Similarity=0.040  Sum_probs=43.1

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEE--cCe--eeeCC
Q 011558           22 PVRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGE--WRHDE   84 (483)
Q Consensus        22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v--dg~--w~~d~   84 (483)
                      -++| +|.+.|++|+|+|+||+ ....||.+.+. .|.|++.+++..|.. |||.|  ||+  .+.||
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~-~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DP   93 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHP-RGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDP   93 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEcCC-CceEEEEecCCCCCC-eEEEEEeCCceeEeccc
Confidence            3444 57888999999999997 33468987533 699999999766732 55555  786  45555

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.40  E-value=0.06  Score=58.54  Aligned_cols=65  Identities=25%  Similarity=0.511  Sum_probs=46.0

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc-CCceEEEEEEEc---Ce--eeeCCCCCee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVD---GE--WRHDENQPHV   89 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vd---g~--w~~d~~~~~~   89 (483)
                      ++|+ |.+.|++|.|+|+||+|... .+|.+.+ ..|+|++.++- .+|. .|||.|+   |.  ++.||.....
T Consensus        30 ~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~  102 (613)
T TIGR01515        30 TRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA  102 (613)
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence            4554 56679999999999999764 4887653 26999988863 4554 5888884   55  4677755433

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.03  E-value=0.083  Score=42.95  Aligned_cols=46  Identities=30%  Similarity=0.657  Sum_probs=35.7

Q ss_pred             CceEEEEeccC---CCCCC--CCCCcCC-CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           31 GRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        31 ~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      |++++|+|+-.   +|++.  .+|.... .....|++.+.+|++ .++|||++
T Consensus        13 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815          13 GQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             CCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            88999999875   79764  5786432 223489999999997 59999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.15  E-value=0.39  Score=45.51  Aligned_cols=113  Identities=15%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc--------cc-cccCCccHHHHHhcC
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY--------AQ-IHLDEMNIHQALQLG  419 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~--------~~-~~l~~~~v~~~l~~~  419 (483)
                      +.++.|+.+  +.||+++-     ..+.|.+ +|+++-+-+..+|+.--++...        .. -.+....+.+.....
T Consensus       187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            456677766  78998875     4688998 7999999998888763221110        00 011122333322211


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                      .    +.  .   --.........+++..+...+...+|||| ++|+++|+||+.+++..
T Consensus       259 ~----~~--~---~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 E----PA--D---GEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             c----cc--c---CCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence            1    00  0   01123344455588888889999999999 68999999999999875

>PLN02316 synthase/transferase

Probab=94.05  E-value=0.23  Score=56.44  Aligned_cols=61  Identities=13%  Similarity=0.249  Sum_probs=46.0

Q ss_pred             cceEEEEEecC------CCceEEEEeccCCCCCCC----CCCcCC-CCCCeEEEEEEcCCceEEEEEEE-cCe
Q 011558           19 ILVPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGE   79 (483)
Q Consensus        19 ~~~~~~f~~~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~l~~g~~~ykf~v-dg~   79 (483)
                      ..-++++.|+.      ++.+|++.|.||+|....    .|.+.+ ..+++|.+++.+|+.-|-.-|+. ||.
T Consensus       327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~  399 (1036)
T PLN02316        327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP  399 (1036)
T ss_pred             CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence            34578888863      367899999999998532    333333 24569999999999999999997 663

>PLN02950 4-alpha-glucanotransferase

Probab=93.74  E-value=0.45  Score=53.82  Aligned_cols=74  Identities=19%  Similarity=0.356  Sum_probs=54.2

Q ss_pred             cCCcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCcCCCCCCeEEEEEEcCCc--eEEEEEEE---cCe--
Q 011558           16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DGE--   79 (483)
Q Consensus        16 ~~~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g--~~~ykf~v---dg~--   79 (483)
                      .++..++|+|....    .|.+|+|+|+=.   ||++.  .+|....  ...|++++.+|++  ..+|||++   +|.  
T Consensus       148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~  225 (909)
T PLN02950        148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVS  225 (909)
T ss_pred             CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence            45567888998643    488999999876   89864  4666543  6789999999988  48999998   444  


Q ss_pred             eeeCCCCCeeeC
Q 011558           80 WRHDENQPHVSG   91 (483)
Q Consensus        80 w~~d~~~~~~~~   91 (483)
                      |-..++.-....
T Consensus       226 WE~g~NR~~~~p  237 (909)
T PLN02950        226 LELGVNRELSLD  237 (909)
T ss_pred             EeeCCCceeecC
Confidence            866665544433

>TIGR02104 pulA_typeI pullulanase, type I

Probab=93.72  E-value=0.16  Score=55.22  Aligned_cols=65  Identities=18%  Similarity=0.279  Sum_probs=44.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-----CCCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEEcCe--eeeCCCCCeee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVDGE--WRHDENQPHVS   90 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vdg~--w~~d~~~~~~~   90 (483)
                      ++|+ |...|++|.|++ |++|+.     .++|.+..  .|+|++.++ +.+| .|.|++..+|.  ++.||......
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~   95 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT   95 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence            5674 566799999998 888853     35888755  799999987 4455 34444444565  48888665543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=93.39  E-value=0.69  Score=39.00  Aligned_cols=81  Identities=22%  Similarity=0.396  Sum_probs=54.6

Q ss_pred             eEEEEEec----CCCceEEEEeccCCCCCC-----CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEcCe--------e--
Q 011558           21 VPVRFIWP----NGGRRVSLSGSFTRWSEP-----MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE--------W--   80 (483)
Q Consensus        21 ~~~~f~~~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~--------w--   80 (483)
                      +-|+|.|.    .....+.|.|..|++...     ..|.+.++ ..+|..++.||.+ +-.|+|+.+-.        |  
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            46899999    345669999999998542     37778765 5799999999998 78999996432        2  


Q ss_pred             ------eeCCCCCeee-CC---CCCeeeEEEe
Q 011558           81 ------RHDENQPHVS-GN---YGVVNCVYIA  102 (483)
Q Consensus        81 ------~~d~~~~~~~-~~---~g~~nn~~~v  102 (483)
                            ..||-+|... ..   .|..-++++.
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L  112 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL  112 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE-
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeC
Confidence                  6789888654 33   4889999998

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PLN02950 4-alpha-glucanotransferase

Probab=93.08  E-value=0.64  Score=52.62  Aligned_cols=68  Identities=25%  Similarity=0.513  Sum_probs=48.2

Q ss_pred             CCcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCcCC-CCCCeEEEEEEcCCc-eEEEEEEE---cCe---e
Q 011558           17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV---DGE---W   80 (483)
Q Consensus        17 ~~~~~~~~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v---dg~---w   80 (483)
                      .+..+.++|.-++   -|.+|+|+|+-.   +|+..  .+|.... .....|++++.||.| ..+|||++   +|.   |
T Consensus         5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W   84 (909)
T PLN02950          5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW   84 (909)
T ss_pred             CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence            3445677777654   388999999886   79864  5886543 123489999999998 59999995   343   6


Q ss_pred             eeCC
Q 011558           81 RHDE   84 (483)
Q Consensus        81 ~~d~   84 (483)
                      -..+
T Consensus        85 E~g~   88 (909)
T PLN02950         85 EAGK   88 (909)
T ss_pred             ecCC
Confidence            5554

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.83  E-value=0.24  Score=48.23  Aligned_cols=91  Identities=14%  Similarity=0.176  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccccccc
Q 011558          268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN  347 (483)
Q Consensus       268 ~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m  347 (483)
                      ..-..++..+.....+.+.+++.   .+   +.+|+++..+..+..                                 +
T Consensus       293 ~~~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~~---------------------------------~  333 (386)
T COG4175         293 DGPRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKAA---------------------------------L  333 (386)
T ss_pred             cccchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhccc---------------------------------c
Confidence            34456777777776666666632   34   688888887765530                                 3


Q ss_pred             CCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       348 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      .+++.++..++++.+.+..+.+... .+||+|++++++|++++..++.++.
T Consensus       334 ~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         334 IDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            3467788999999999988877654 5999999999999999999998664

>PLN02316 synthase/transferase

Probab=92.68  E-value=0.34  Score=55.17  Aligned_cols=59  Identities=14%  Similarity=0.239  Sum_probs=46.8

Q ss_pred             eEEEEEecC------CCceEEEEeccCCCCCC---CCCCcCCCCCCeEEEEEEcCCceEEEEEEE-cCe
Q 011558           21 VPVRFIWPN------GGRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKFYV-DGE   79 (483)
Q Consensus        21 ~~~~f~~~~------~~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v-dg~   79 (483)
                      -++++.|+.      +..+|.|.|-||+|.-.   .+|.+.+..+++|++.+.+|++-|..-|+. ||.
T Consensus       154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~  222 (1036)
T PLN02316        154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ  222 (1036)
T ss_pred             CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc
Confidence            356666644      25679999999999753   377777655789999999999999999998 774

>PLN02960 alpha-amylase

Probab=89.91  E-value=0.38  Score=53.38  Aligned_cols=52  Identities=29%  Similarity=0.518  Sum_probs=39.5

Q ss_pred             EEEecCCCceEEEEeccCCCCCCC-CCC-----cCCCCCCeEEEEEE--cCCc----e-E--EEEEEEc
Q 011558           24 RFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPG----H-H--QYKFYVD   77 (483)
Q Consensus        24 ~f~~~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~~~~~~~~~--l~~g----~-~--~ykf~vd   77 (483)
                      -..|..+|+.++|+|+||||+++. +|.     +.+  =|+|.++++  |..|    . |  ||.|..|
T Consensus       132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             EEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            346999999999999999999864 554     444  689998876  5555    2 2  7888774

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=89.32  E-value=0.8  Score=46.72  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=40.9

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      ....++.+++++.+++..+.+.+.. ++|+|+ |+++|+|++.+++..+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       333 AAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence            3567889999999999998887654 889985 99999999999988654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=89.00  E-value=0.9  Score=50.07  Aligned_cols=54  Identities=22%  Similarity=0.485  Sum_probs=39.0

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC----CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w   80 (483)
                      ++|+ |...|++|.|+ -|++|..    ..+|.+..  +|+|++.++ +.+|. .|+|.|+|.|
T Consensus        16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence            5664 56669999986 5665542    34787755  799999986 66666 5999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PRK03705 glycogen debranching enzyme; Provisional

Probab=87.59  E-value=0.92  Score=49.64  Aligned_cols=54  Identities=22%  Similarity=0.480  Sum_probs=39.2

Q ss_pred             EEE-EecCCCceEEEEeccCCCC--CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w   80 (483)
                      +.| +|...|++|.|+. |++|.  ..++|.+..  .|+|++.++ +.+| ..|+|.|+|.|
T Consensus        21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G-~~Y~yrv~g~~   78 (658)
T PRK03705         21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPG-LRYGYRVHGPW   78 (658)
T ss_pred             EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCC-CEEEEEEcccc
Confidence            566 4566799999997 77653  235887654  799999887 4455 46999999854

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=87.04  E-value=4.6  Score=41.70  Aligned_cols=87  Identities=26%  Similarity=0.389  Sum_probs=58.4

Q ss_pred             CCcceEEEEEecCC-C-------ceEEEEe--ccC--CCCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEc---C--
Q 011558           17 GSILVPVRFIWPNG-G-------RRVSLSG--SFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G--   78 (483)
Q Consensus        17 ~~~~~~~~f~~~~~-~-------~~V~l~G--sf~--~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd---g--   78 (483)
                      ....+-|||.|..+ +       +.|+|-+  ..+  .+....+|.+..+ ..+|..++.||.. +-.|+|+++   .  
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~  113 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF  113 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence            45678999999864 2       2488732  222  1333347888865 5789999999998 789999982   1  


Q ss_pred             ----------e------e-------eeCCCCCeee-CCCCCeeeEEEeccC
Q 011558           79 ----------E------W-------RHDENQPHVS-GNYGVVNCVYIAVPQ  105 (483)
Q Consensus        79 ----------~------w-------~~d~~~~~~~-~~~g~~nn~~~v~~~  105 (483)
                                .      |       ..||.+|... +..|+-.|++++ ..
T Consensus       114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l-p~  163 (411)
T PRK10439        114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM-PQ  163 (411)
T ss_pred             cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC-CC
Confidence                      0      2       3788887653 445555688888 53

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=86.99  E-value=1.4  Score=50.83  Aligned_cols=65  Identities=12%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             EEE-EecCCCceEEEEe-ccCCCCC---CCCCCcCCCCCCeEEEEEE-cCCc-----eEEEEEEEcC----eeeeCCCCC
Q 011558           23 VRF-IWPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP   87 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-l~~g-----~~~ykf~vdg----~w~~d~~~~   87 (483)
                      ++| .|...|++|.|++ .+++|..   .++|.+.+  .|+|++.++ +.+|     -+.|+|.|++    ....||...
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            455 4677799999998 4556754   46898765  899999886 3432     3688888866    367777555


Q ss_pred             ee
Q 011558           88 HV   89 (483)
Q Consensus        88 ~~   89 (483)
                      .+
T Consensus       407 al  408 (1111)
T TIGR02102       407 SL  408 (1111)
T ss_pred             EE
Confidence            43

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=86.27  E-value=2.2  Score=40.65  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          357 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       357 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      .....+++..+...+.+.+||+|++|+++|.+++.+++.
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            334456777888889999999999999999999999875

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=82.73  E-value=4.9  Score=45.46  Aligned_cols=66  Identities=21%  Similarity=0.314  Sum_probs=43.7

Q ss_pred             EEE-EecCCCceEEEEeccCCCCC--CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc------Ce----eeeCCCCCe
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQPH   88 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~~--~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~~   88 (483)
                      ++| .|...|++|.|++..++|..  .++|.+.+ ..|+|++.++ ...|. .|+|.|+      |+    +..||....
T Consensus       137 v~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a  214 (898)
T TIGR02103       137 VTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS  214 (898)
T ss_pred             EEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence            445 47777999999977766642  35887752 2799999986 33454 4677765      53    367776655


Q ss_pred             ee
Q 011558           89 VS   90 (483)
Q Consensus        89 ~~   90 (483)
                      ..
T Consensus       215 ls  216 (898)
T TIGR02103       215 LS  216 (898)
T ss_pred             Ec
Confidence            43

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=82.36  E-value=4.9  Score=33.01  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             cceEEEEEecC-CCceEEEEeccCC--CCC-CCCCCcCCCCC--CeEEEEEEcCCceEEEEEEE
Q 011558           19 ILVPVRFIWPN-GGRRVSLSGSFTR--WSE-PMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV   76 (483)
Q Consensus        19 ~~~~~~f~~~~-~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~l~~g~~~ykf~v   76 (483)
                      ..+.++++-+. ..++|.|.-.-+.  |.. ..+|.+....+  ..|+++++++.|.+.|.|.+
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            56677776643 3677888655442  222 46888764322  35999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=80.04  E-value=6.4  Score=30.56  Aligned_cols=62  Identities=26%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             CCcceEEEEEecCCC---ceEEEEeccC-CCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEE-c-CeeeeC
Q 011558           17 GSILVPVRFIWPNGG---RRVSLSGSFT-RWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRHD   83 (483)
Q Consensus        17 ~~~~~~~~f~~~~~~---~~V~l~Gsf~-~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v-d-g~w~~d   83 (483)
                      .+.-.-+.+.+.+|+   .+|.|.++=+ +|.   +|.+.-  ...|++.-.++.|-+.+|+-. | |+|...
T Consensus        10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv~   77 (82)
T PF01357_consen   10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVVA   77 (82)
T ss_dssp             BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred             CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence            456677778887664   4599995444 585   688876  679998877777899999988 7 887764

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	483
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		9e-34
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		8e-24
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		9e-24
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		6e-23
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		8e-23
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		2e-14
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		5e-14
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		4e-13
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		6e-13
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-12
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		6e-12
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		9e-11
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		2e-08
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		3e-07
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		2e-06
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		7e-04

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240
Query: 389 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 448
           S+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ R
Sbjct: 241 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINR 290
Query: 449 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           L    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 LVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 34/334 (10%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 74  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 180 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 230
Query: 388 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 447
           Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + +
Sbjct: 231 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 280
Query: 448 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
            + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 281 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 34/334 (10%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 75  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 181 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 231
Query: 388 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 447
           Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + +
Sbjct: 232 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 281
Query: 448 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
            + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 282 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 268
Query: 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 269 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 261
Query: 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 262 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPD 107
           HD ++P V+   G VN + I V + D
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTD 92

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P + S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPD 107
           HD ++P V+   G VN + I V + D
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTD 92

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
          P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W 
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHN---DFVAILDLPEGEHQYKFFVDGQWV 67
Query: 82 HDENQPHVSGNYGVVN 97
          HD ++P V+   G +N
Sbjct: 68 HDPSEPVVTSQLGTIN 83

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78  GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
            E R  +  P  +   G  VN  YI V QP+  P     E   + E D   MRP    + 
Sbjct: 61  NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
           S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402
           I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y
Sbjct: 16  ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 403 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 462
             + L   ++ +AL    D      F G     C ++D L  +M+ +    V R  +V+ 
Sbjct: 73  NDLSL---SVGEALMRRSD-----DFEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD- 121
Query: 463 GSKRVEGIISLSDVFRFLL 481
              R+ G+++LSD+ +++L
Sbjct: 122 DVGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 357 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 416
           T  +   +  L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL
Sbjct: 27  TTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEAL 83
Query: 417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 476
               D      F G     C ++D L  + + +    V R  +V+    R+ G+++LSD+
Sbjct: 84  XRRSD-----DFEG--VYTCTKNDKLSTIXDNIRKARVHRFFVVD-DVGRLVGVLTLSDI 135
Query: 477 FRFLL 481
            +++L
Sbjct: 136 LKYIL 140

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29  NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
            G  RV +SG    W + +P++  +G    F I+ R LP G  +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88  HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
            +  N  G  N     V  P  V  T     S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV- 80
Query: 396 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR 455
               KA A           A  L Q  + ++  N  RCQ    +D L ++M      G  
Sbjct: 81  ----KAVAG--------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIM----TGGRF 124
Query: 456 RLVIVEAGSKRVEGIISLSDVFRFLLG 482
           R V VE  + R+ GIIS+ DV +  +G
Sbjct: 125 RHVPVEE-NGRLAGIISIGDVVKARIG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	483
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-73
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-65
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	7e-65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-31
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-29
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-27
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-07
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	7e-26
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	4e-25
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-20
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-12
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	1e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-05
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	7e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	9e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	4e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-09
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-05
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	4e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-07
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	6e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	9e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	5e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  233 bits (595), Expect = 4e-73
 Identities = 73/345 (21%), Positives = 155/345 (44%), Gaps = 36/345 (10%)

Query: 138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 197
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 198 KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 256
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  +
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMN 173

Query: 317 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP 376
            K       +L+ P++ + +GTW                    +   + +L + ++S++P
Sbjct: 174 CKE----TAMLRVPLNQMTIGTWSNLA---------TASMETKVYDVIKMLAEKNISAVP 220

Query: 377 IVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMC 436
           IV+   +LL++Y   D+  L +D  Y+ + L   ++ +AL                   C
Sbjct: 221 IVNSEGTLLNVYESVDVMHLIQDGDYSNLDL---SVGEALLKRPANFD-------GVHTC 270

Query: 437 LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
             +D L  + + + +  V RL +V+  + ++EGI+SL+D+  +++
Sbjct: 271 RATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII 314

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  212 bits (542), Expect = 3e-65
 Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 41/354 (11%)

Query: 128 MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 187
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 188 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ    
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD--- 123

Query: 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 307
                      +PLV   P  SL +    +++NK+  +P+I            LY+ +  
Sbjct: 124 ---------SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHK 169

Query: 308 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
            ILK +             + + +  +Q+GT+            AM+R T  +  AL + 
Sbjct: 170 RILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIF 219

Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427
           VQ  VS++P+VD+   ++DIYS+ D+  LA +K Y  +    +++ +ALQ        + 
Sbjct: 220 VQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD---VSVTKALQHRSHYFEGV- 275

Query: 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
                   C   + L  ++ RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 276 ------LKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV 322

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  211 bits (539), Expect = 7e-65
 Identities = 79/352 (22%), Positives = 156/352 (44%), Gaps = 37/352 (10%)

Query: 130 PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L +   
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309
                           P   L E  LK+L+++   +P+I         + ++ + +   I
Sbjct: 121 --------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRI 171

Query: 310 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           LK +  + + +      L+ P+  + + T                + T  +   + +L Q
Sbjct: 172 LKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQ 218

Query: 370 ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429
             VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D        
Sbjct: 219 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFE----- 270

Query: 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
                 C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 271 --GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 319

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  116 bits (292), Expect = 5e-31
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 20/157 (12%)

Query: 325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 384
             L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 385 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 444
           +++Y   D+  L K   Y  + L    + +AL    D       + +    C ++D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSD-------DFEGVYTCTKNDKLST 104

Query: 445 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
             +        + +V   + Q +V++VPII   G        +       D+L  I    
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN----VY---EAYDVLGLIKGGI 71

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAML------RPTASLGSALALLVQAD 371
            +  S                    +GEA  R                L + +  + +A 
Sbjct: 72  YNDLSL------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113

Query: 372 VSSIPIVDDNDSLLDIYSRSDI 393
           V    +VDD   L+ + + SDI
Sbjct: 114 VHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 293 -PAGSCQEILYLASLSDILKCI 313
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  115 bits (287), Expect = 2e-29
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 1/139 (0%)

Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78  GEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYS 137
            E R  +  P  +   G     YI V QP+  P      +     +          A   
Sbjct: 61  NELRVSDFLPTATDQMGNFVN-YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQI 119

Query: 138 EADLQLSRDRISSFLSTHT 156
             D     D  + F    +
Sbjct: 120 GKDPDDFGDGYTRFHEDLS 138

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  109 bits (275), Expect = 2e-27
 Identities = 40/317 (12%), Positives = 101/317 (31%), Gaps = 48/317 (15%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343
             PI++         +++ L +  D+++ +      +      + + V            
Sbjct: 117 GAPIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVA--------- 161

Query: 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 403
                       P   L      +V+     +P+V +   L+ I + +D   L       
Sbjct: 162 -----------TPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAF 209

Query: 404 QIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 463
             H+   N+ +   +            +        D L K+ E +    +  L +V+  
Sbjct: 210 N-HMQTGNVREITNV-----RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN 263

Query: 464 SKRVEGIISLSDVFRFL 480
            + ++GII+  DV ++ 
Sbjct: 264 LR-IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAK 398
           V  +  A  +    + PT ++  AL  + +     +P+V+  N+ ++ I +  DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 399 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 458
                  +      H+   L     P      +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 459 IVEAGSKRVEGIISLSDVFRFLL 481
           IV   ++ +  +I+  DV R LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score =   99 bits (249), Expect = 7e-26
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 11  ENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHH 70
           E +    +   P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEH 56

Query: 71  QYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 108
           QYKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  104 bits (259), Expect = 4e-25
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 25  FIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDE 84
            +   G  RV +SG    W + +P++  +G    + +   LP G  +YK+ +DGEW H+E
Sbjct: 175 TLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNE 233

Query: 85  NQPHVSGN-YGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQL 143
            +P +  N  G  N  Y  V      P ++   T   +  +D  +  E            
Sbjct: 234 AEPFIGPNKDGHTN-NYAKVVDD---PTSVDGTTRERLSSEDPELLEE------------ 277

Query: 144 SRDRISSFLSTHTVYEL 160
            R ++  FL T +  E+
Sbjct: 278 ERSKLIQFLETCSEAEV 294

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 33/321 (10%), Positives = 94/321 (29%), Gaps = 62/321 (19%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343
           ++P++          + + + +  + L       +                        +
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PV 158

Query: 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAY 402
                     +     L  A+ L+++     +P++DD++ ++ I +  +    LAK    
Sbjct: 159 KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 218

Query: 403 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 462
                    + + +        +L               +++    +    +  L+I+  
Sbjct: 219 LDPDYFYGKVVKDV-----MVTNL-------VTIDELASVNRAAAEMIVKRIGSLLILNK 266

Query: 463 GSKRVEGIISLSDVFRFLLGV 483
            +  + GII+  D+   L  +
Sbjct: 267 DNT-IRGIITERDLLIALHHI 286

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 61.4 bits (150), Expect = 8e-12
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 406
                +    +L +A   + + D+ ++PI  D+D L  + +  DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 407 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 466
             E+       +  +A                   + +++  +    VRR+ ++     R
Sbjct: 76  AGELARDSIYYVDANA------------------SIQEMLNVMEEHQVRRVPVISEH--R 115

Query: 467 VEGIISLSDVFRFL 480
           + GI++ +D+ R L
Sbjct: 116 LVGIVTEADIARHL 129

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 12 NSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHH 70
            G  G  +V     WP   + + L G FT      + +   E       +  +L PG +
Sbjct: 11 GKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEY 67

Query: 71 QYKFYVDGEWR 81
           Y F +D ++ 
Sbjct: 68 GYGFQIDNDFE 78

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHL 407
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI   +        I +
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 74

Query: 408 DE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 465
           +  M            N           +    + PL +V+ ++A   ++ ++I E G  
Sbjct: 75  ERIMT----------RNL----------ITANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 466 RVEGIISLSDVFRFLL 481
           ++ GI +LSD+     
Sbjct: 113 KIVGIFTLSDLLEASR 128

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 20/132 (15%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
             + +     S   A   L  +  +  P++D     L +   S +    K     +  L 
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLG 71

Query: 409 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 468
           E  +                           + L   +  +A      + + +    R E
Sbjct: 72  EELLETVRSYRPG------------------EQLFDNLISVAAAKCSVVPLADE-DGRYE 112

Query: 469 GIISLSDVFRFL 480
           G++S   +  FL
Sbjct: 113 GVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            S  + A ++  +  A  P++      G       +  LS +L+             P +
Sbjct: 22  GSTADAARRLAASGCACAPVLDGERYLG-------MVHLSRLLE--------GRKGWPTV 66

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
           ++ +    L                  RP   L   L  +  A  S +P+ D++     +
Sbjct: 67  KEKLGEELL------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV 114

Query: 388 YSRSDI-TALAK 398
            SR  I   LA+
Sbjct: 115 VSRKRILGFLAE 126

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIH 406
                L     L   + ++   DV+  P+V+  +S  L+ I  R+ +    + +  ++  
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 407 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 465
             +  +   L  G    P          + L S+  LH+         ++ L +   G  
Sbjct: 81  GHQQCLQDILARGCPTEPV--------TLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-- 130

Query: 466 RVEGIISLSDVFRFLLGV 483
           R  G +S  ++ + +  +
Sbjct: 131 RAVGCVSWVEMKKAISNL 148

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT- 394
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 395 -ALAKDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANP 452
               +  A  Q  +   M            N            C  +    ++ME +   
Sbjct: 82  AVAGQGAASLQQSVSVAM----------TKNV---------VRCQHNSTTDQLMEIMTGG 122

Query: 453 GVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
             R + + E G  R+ GIIS+ DV +  +
Sbjct: 123 RFRHVPVEENG--RLAGIISIGDVVKARI 149

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE-M 410
           +    ++  A+ ++ +  +  + + DDN + + + S   I    + ++K   ++ +   M
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 81

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 470
                               +          +  V   L+  G+ R  +V+    RV GI
Sbjct: 82  R-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGI 121

Query: 471 ISLSDVFRFL 480
           ++L+D+ R+L
Sbjct: 122 VTLTDLSRYL 131

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
                     ++ +    + +N +  + +    G   G    +L   S   I+K      
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG----LL---SERSIIKRFIPRN 69

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
           K           P+  +              +P   ++    +    A L +  +    +
Sbjct: 70  KKPDE------VPIRLVM--R----------KPIPKVKSDYDVKDVAAYLSENGLERCAV 111

Query: 378 VDDNDSLLDIYSRSDIT-ALAKDKAYAQIH 406
           VDD   ++ I + +D++  L++      + 
Sbjct: 112 VDDPGRVVGIVTLTDLSRYLSRASITDILL 141

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           ++P+ S+  AL LLV+  V+ +P++DDN +L+ + S  D+  LA D    +   D     
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDL--LALDSISGRSQNDTNLFP 76

Query: 414 QALQLGQDANPSLGFNGQRCQMCLR------------SDPLHKVMERLANPGVRRLVIVE 461
                 +  N       +     +             S  L      L     RRL +V+
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD 136

Query: 462 AGSKRVEGIISLSDVFRFLL 481
               ++ GI++  +V R  L
Sbjct: 137 -ADGKLIGILTRGNVVRAAL 155

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDE-MN 411
           +    S+  A+  +   DV ++ +VD +  L+ + SR D+  A    +    + +   M 
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 412 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK--RVEG 469
                       P++         C R D +  + + L    +  L +++   K   V G
Sbjct: 89  ----------RMPNITV-------CRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 470 IISLSDVFRFLL 481
            ++ +++ + L+
Sbjct: 132 RVTKTNMTKILV 143

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDIT-ALAK 398
           R  E   RP   L  TA++      L +  V    +   D+    + + S  DI  A+A+
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 399 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 458
                   +   N           +P            L +DP+H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN-----------SP---------ITVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 459 IVEAGSKRVEGIISLSDVFRFLLGV 483
           +V   +  + G++S+ D+      +
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAIL 129

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALA 397
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D + L+ I +  D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 398 KDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR 456
            DK      + E M                            ++     M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIM----------TRQV---------AYVDLNNTNEDCMALITEMRVRH 107

Query: 457 LVIVEAGSKRVEGIISLSDVFRFLL 481
           L +++ G  +V G++S+ D+ +  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 21/143 (14%), Positives = 57/143 (39%), Gaps = 25/143 (17%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKD 399
           +    +GR    +     +  A+ L+ +  + ++ +VD +D +  I +  D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 400 KAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 458
           ++     ++E M           A           +    S    + M  +    +R L 
Sbjct: 73  RSSKATRVEEIM----------TAKV---------RYVEPSQSTDECMALMTEHRMRHLP 113

Query: 459 IVEAGSKRVEGIISLSDVFRFLL 481
           +++ G  ++ G+IS+ D+ + ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 11/140 (7%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           +     +   +  +++  V+    V  ++ L+ +     +  ++    +  I  +E+   
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 88

Query: 414 QALQLGQD-----------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 462
              +L               +                 PL + ++ + +  ++ + +V+ 
Sbjct: 89  SMKRLIAKNASEIMLDPVYVHM--------------DTPLEEALKLMIDNNIQEMPVVD- 133

Query: 463 GSKRVEGIISLSDVFRFLLG 482
               + G ++  ++   L  
Sbjct: 134 EKGEIVGDLNSLEILLALWK 153

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
                      ++E+  +IL++ V     +       G    ++    +  +LK    HF
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG----MI---PVMHLLKVSGFHF 76

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
                   +++  +  +          E    P   +     L  AL L++  ++  +P+
Sbjct: 77  FGFIPKEELIRSSMKRLIAKN----ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 378 VDDNDSLLDIYSRSDIT-ALAKDK 400
           VD+   ++   +  +I  AL K +
Sbjct: 132 VDEKGEIVGDLNSLEILLALWKGR 155

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 39/141 (27%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDE--- 409
            +    +  A   +++  +SS+P++DD + ++ I + +DI   L +DK   +  + +   
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT 80

Query: 410 ---------MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV 460
                     +I +A++                 M +                + +L +V
Sbjct: 81  KDVITIHEDASILEAIKK----------------MDISGKKEEI---------INQLPVV 115

Query: 461 EAGSKRVEGIISLSDVFRFLL 481
           +  + ++ GIIS  D+ R + 
Sbjct: 116 D-KNNKLVGIISDGDIIRTIS 135

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 400
            + E        +   A L     ++ + ++ S+ +VD  +  + I +  DI  A+ K K
Sbjct: 5   IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGK 63

Query: 401 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVI 459
           +      + M           A+           + +R D P+   +  +    +R L +
Sbjct: 64  SLETKAEEFMT----------ASL----------ITIREDSPITGALALMRQFNIRHLPV 103

Query: 460 VEAGSKRVEGIISLSDVFRFL 480
           V+     ++GIIS+ D+ R +
Sbjct: 104 VD-DKGNLKGIISIRDITRAI 123

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 39/142 (27%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             ++       L ++A  + +  + +V ++    P G    I+   +  DI+K I +   
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG----II---TERDIVKAIGKGKS 64

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM------LRPTASLGSALALLVQADV 372
                   L+                        M      +R  + +  ALAL+ Q ++
Sbjct: 65  --------LETKAEEF------------------MTASLITIREDSPITGALALMRQFNI 98

Query: 373 SSIPIVDDNDSLLDIYSRSDIT 394
             +P+VDD  +L  I S  DIT
Sbjct: 99  RHLPVVDDKGNLKGIISIRDIT 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 58/414 (14%), Positives = 110/414 (26%), Gaps = 118/414 (28%)

Query: 69  HHQYKFYVDGEWRH------DENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNME 122
           HH   F   GE ++         +     N+   +C  +     DM  + +S E     E
Sbjct: 4   HHHMDFET-GEHQYQYKDILSVFEDAFVDNF---DCKDV----QDMPKSILSKE-----E 50

Query: 123 VDDVVMRPEGFAQYSEADLQLSRDRISSFLS--THTVYELLPDSGKVTALDVNLA-VKQA 179
           +D ++M  +         +  +     + LS     V + + +      L +N   +   
Sbjct: 51  IDHIIMSKD--------AVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSP 97

Query: 180 FHVLYEQ-GLPMV-------PLWDD---FKGRFVGVLSALDFILILRE------------ 216
                 Q  +           L++D   F    V   S L   L LR+            
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVL 154

Query: 217 ----LGTNGSNLTEEELETHTISA-------W-KVGK---------LQLNLKRQMDGNG- 254
               LG+  + +  +   ++ +         W  +           +   L  Q+D N  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 255 ----RPCPRPLVQAGPYDSLKEV--------ALKILQNKVATVPIIHSTGPAGSCQEILY 302
                     L        L+ +         L +L N V      ++     SC+ IL 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFN--LSCK-ILL 270

Query: 303 L---ASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 359
                 ++D L                L        L  ++             L     
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVL 323

Query: 360 LGSALALLVQADVSSIP-IVDDNDSLLDIYSRSDITALAK--DKAYAQIHLDEM 410
             +   L      S I   + D  +  D +   +   L    + +   +   E 
Sbjct: 324 TTNPRRL------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           L  T +L  A  L+   D+  +PIVD N  LL I S+ D   L   +  +     + +  
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRD---LLAAQESSLQRSAQGDSL 74

Query: 414 QALQLGQD--------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 465
                  +          P                 L +    +    +  L +V     
Sbjct: 75  AFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVAKD-- 118

Query: 466 RVEGIISLSDVFRFLLGV 483
            + GII+ SD     + +
Sbjct: 119 VLVGIITDSDFVTIAINL 136

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 412
           +  TASL   L   V+    S  +V +    + I +  D+  A+A+    A++ + E+  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKVWEVME 72

Query: 413 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472
              + +   A                   + +  E++    V RL++ E     + G+IS
Sbjct: 73  RDLVTISPRA------------------TIKEAAEKMVKNVVWRLLVEEDD--EIIGVIS 112

Query: 473 LSDVFRFLLG 482
            +D+ R  + 
Sbjct: 113 ATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +       SL++V    ++N   +  ++      G    I+   +  D+L+ I     
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----IV---TTWDVLEAIAEGDD 61

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
            +                     ++ E   R    + P A++  A   +V+  V  + + 
Sbjct: 62  LAEV-------------------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 379 DDNDSLLDIYSRSDIT-ALAKDK 400
           +D D ++ + S +DI  A    +
Sbjct: 103 ED-DEIIGVISATDILRAKMAKR 124

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 353 MLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIHLDEM 410
           + + + ++     ++ +   S  P+V   +S  L+    R D+    ++    Q  +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLRS-------DPLHKVMERLANPGVRRLVIVEAG 463
           +I    +      P      +   +   S        P+  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 464 SKRVEGIISLSDVFRFLLGV 483
             R+ GII+  DV + +  +
Sbjct: 149 --RLLGIITKKDVLKHIAQM 166

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           +  +A++   L  + Q   +   + D       + ++ D+     D        +++++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL----LDLDLDSSVFNKVSLP 81

Query: 414 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 473
                                     D +   +          L +V+    R++G +SL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 474 SDVFRFLL 481
            D    L+
Sbjct: 122 HDFLEALI 129

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM-- 410
                S+  A  +L++ +++ +PIVD++  L+ I +  DI  ALA++K   +   + M  
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIE---EIMTR 70

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 470
           N+  A +                      +P+  V  +++   +  + +V+   +RV GI
Sbjct: 71  NVITAHE---------------------DEPVDHVAIKMSKYNISGVPVVD-DYRRVVGI 108

Query: 471 ISLSDVFRFLLG 482
           ++  D+ R   G
Sbjct: 109 VTSEDISRLFGG 120

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 42/238 (17%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           R +      D+LK+ A  +L+     V ++ S G      + + + ++ DI++      +
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------KPVGILTVGDIIRRYFAKSE 121

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                                   I     R  +++     L +AL  L+ ++  ++P+V
Sbjct: 122 KYKGV------------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV 163

Query: 379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 438
           D   +L+ I   +D+  L   +    +   E+      +   +++P+L F     Q+  +
Sbjct: 164 DSEGNLVGIVDETDL--LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 439 ---------------SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
                             +H+V  ++A   + +L ++      + G+I   D+ + L+
Sbjct: 222 PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226
                 N  +K+A  ++ E     V + D  KG+ VG+L+  D I            +  
Sbjct: 71  PVV-KENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEI 128

Query: 227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 286
           E                               R +        LK     +L +    +P
Sbjct: 129 EPYYQ---------------------------RYVSIVWEGTPLKAALKALLLSNSMALP 161

Query: 287 II----HSTG-------------PAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 329
           ++    +  G                     L  +S  + +             L +  +
Sbjct: 162 VVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 389
           PV+ I                     P  ++      + +  +  +P++     L+ +  
Sbjct: 222 PVAEI-----------MTRDVIVA-TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 390 RSDIT-ALAKDKA 401
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 30/131 (22%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM--- 410
           +   A+   AL L  +  V S P+V+    L+ I S   I  +  D    +  L  +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPD----EEQLAMLVKR 68

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 470
           ++    +                     +D L K  + +     RR+V+V+    +  GI
Sbjct: 69  DVPVVKE---------------------NDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGI 106

Query: 471 ISLSDVFRFLL 481
           +++ D+ R   
Sbjct: 107 LTVGDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 224
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 283
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 284 TVPIIHSTG-PAGSCQEILYLASLSDILKCICRH 316
            +P+I   G   G    ++      D+LK + + 
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLKVLVKS 280

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 412
           ++    L  AL +LV++  S+IP++D    L  + S + I   +   +      L+EM +
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKV 89

Query: 413 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472
            Q +   +   P L             D   K +E   +      +         EGI++
Sbjct: 90  EQVM---KQDIPVLKLE----------DSFAKALEMTID---HPFICAVNEDGYFEGILT 133

Query: 473 LSDVFRFL 480
              + + L
Sbjct: 134 RRAILKLL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 216 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 275
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 276 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 317
             + +    +  ++  G          + +   ILK + +  
Sbjct: 112 MTIDHPF--ICAVNEDG------YFEGILTRRAILKLLNKKV 145

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
             +    P + L    L + +   + +P++ ++    G    ++   S++ ++  I    
Sbjct: 21  DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHG----LI---SMTMMMDAILGLE 73

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
           +     L  +              ++ E   R    LR   SL  A+ L+V      + +
Sbjct: 74  RIEFERLETM--------------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 378 VDDNDSLLDIYSRSDI 393
            +D+     I++R ++
Sbjct: 118 ENDDGYFAGIFTRREV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           ++P   L  AL +L +   S+IP++D +  L  + S + +  +       +I  + +   
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAILGLERIEFERLETM 83

Query: 414 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 473
           +  ++     P L  +          D L K +  + N      V VE       GI + 
Sbjct: 84  KVEEVMNRNIPRLRLD----------DSLMKAVGLIVN---HPFVCVENDDGYFAGIFTR 130

Query: 474 SDVFRFL 480
            +V + L
Sbjct: 131 REVLKQL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 352 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM 410
           A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      LD++
Sbjct: 27  AHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 470
            + + +       P L  N          DP+ K    + N      V VE   +  EGI
Sbjct: 87  TVEEVM---LTDIPRLHIN----------DPIMKGFGMVIN---NGFVCVENDEQVFEGI 130

Query: 471 ISLSDVFRFL 480
            +   V + L
Sbjct: 131 FTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 325
             ++L+   L + +     +P++  +        +  L   + I+  I    +     L 
Sbjct: 31  VGNNLEHALLVLTKTGYTAIPVLDPSY------RLHGLIGTNMIMNSIFGLERIEFEKLD 84

Query: 326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 385
            +               + E        L     +     +++  +   + + +D     
Sbjct: 85  QI--------------TVEEVMLTDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFE 128

Query: 386 DIYSRSDI 393
            I++R  +
Sbjct: 129 GIFTRRVV 136

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 37/262 (14%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 154 THTVYELLPD--SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211
           +H V   + D    K+  L   +++K A++++ ++ L  +P+ D      +G+LS  +  
Sbjct: 2   SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNIT 60

Query: 212 LILRELGTNGSNLTEEELETHTISAWK-------------VGKLQLNLKRQMDGNGRPCP 258
               ++  +           + +                  GK+ +   +          
Sbjct: 61  ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +  AG    ++   ++        V ++  TG     +EI+ LA  ++I      H  
Sbjct: 121 GDIAIAGDRAEIQAELIE------LKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDS 174

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
            ++S L +   PV  +                   +     +      + +   S+ P++
Sbjct: 175 FTASRLIVQSLPVDYVM-----------TKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223

Query: 379 DDNDSLLDIYSRSDITALAKDK 400
           D+N+ ++   +R  + +  K K
Sbjct: 224 DENNKVVGSIARFHLISTHKKK 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	483
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.98
3ddj_A	296	CBS domain-containing protein; structural genomics	99.97
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.96
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.91
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.9
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
3ddj_A	296	CBS domain-containing protein; structural genomics	99.88
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.87
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.85
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.84
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.82
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.82
4esy_A	170	CBS domain containing membrane protein; structural	99.8
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.76
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.74
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.73
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.73
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.73
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.72
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.72
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.72
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.71
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.71
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.71
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.71
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.7
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.7
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.7
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.7
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.7
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.7
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.69
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.68
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.68
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.68
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.67
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.67
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.67
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.66
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.66
4esy_A	170	CBS domain containing membrane protein; structural	99.65
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.65
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.64
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.63
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.63
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.63
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.62
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.62
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.6
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.59
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.59
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.58
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.57
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.57
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.56
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.56
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.56
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.55
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.55
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.55
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.55
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.54
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.54
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.53
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.53
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.53
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.53
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.52
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.52
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.52
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.52
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.52
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.51
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.51
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.51
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.5
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.5
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.5
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.5
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.5
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.5
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.5
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.49
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.48
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.47
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.47
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.46
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.46
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.45
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.44
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.44
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.44
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.43
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.42
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.42
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.4
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.39
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.33
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.29
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.27
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.26
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.26
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.25
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.24
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.2
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.16
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.15
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.11
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.11
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.08
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.06
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.03
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.03
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.01
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.84
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.78
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.75
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.75
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.53
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.51
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.48
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.94
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	97.87
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.32
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.06
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	96.99
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.45
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.41
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	96.05
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.78
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	95.72
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.48
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.41
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.37
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.17
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.09
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.04
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.89
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	94.78
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	94.48
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	93.14
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	92.89
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	92.73
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	92.19
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	92.04
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	91.98
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	91.77
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	90.29
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	90.21
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	89.82
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.58
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	88.64
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	86.96
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	84.32

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=4.2e-40  Score=327.12  Aligned_cols=307  Identities=25%  Similarity=0.449  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhc
Q 011558          139 ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (483)
Q Consensus       139 ~~~~~~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~  218 (483)
                      .+.....+++.+||+.++|||+||.+.++++++.+.|+.+|++.|.+++++++||||++.++++|++|..|++.++.+++
T Consensus        14 ~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~   93 (323)
T 3t4n_C           14 IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYF   93 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHH
Confidence            44466789999999999999999999999999999999999999999999999999988888999999999999887665


Q ss_pred             cCCCCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcc
Q 011558          219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ  298 (483)
Q Consensus       219 ~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~  298 (483)
                      ..+..  .+.++.+....+++.....+          .+.++++++.+++++.+|++.|.+++++++||++++...+ ..
T Consensus        94 ~~~~~--~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~  160 (323)
T 3t4n_C           94 SNPDK--FELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-RE  160 (323)
T ss_dssp             HCGGG--GGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CE
T ss_pred             cCcch--hHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-cc
Confidence            43322  23555666666766554332          4678899999999999999999999999999997632222 11


Q ss_pred             eEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEE
Q 011558          299 EILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV  378 (483)
Q Consensus       299 ~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv  378 (483)
                      +++|++|.+||++++..+...    ......+++++.++         |.+++.++.+++++.+|+++|.+++++++||+
T Consensus       161 ~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv  227 (323)
T 3t4n_C          161 IVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII  227 (323)
T ss_dssp             EEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             ceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE
Confidence            399999999999998765432    12223344433211         67789999999999999999999999999999


Q ss_pred             cCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEE
Q 011558          379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV  458 (483)
Q Consensus       379 d~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~  458 (483)
                      |++|+++|++|.+|+++++..+.+...   +.++.+++.....       ...++++|.+++++.+|+++|.+++++++|
T Consensus       228 d~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~  297 (323)
T 3t4n_C          228 DENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARVHRFF  297 (323)
T ss_dssp             CTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCCCEEE
T ss_pred             CCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCCCEEE
Confidence            999999999999999997765543322   3678885543110       002688999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHHhc
Q 011558          459 IVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       459 VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ||| ++|+++|+||.+||++++++
T Consensus       298 Vvd-~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          298 VVD-DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             EEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             EEC-CCCcEEEEEEHHHHHHHHHh
Confidence            999 57999999999999999975

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=3.1e-34  Score=286.10  Aligned_cols=306  Identities=22%  Similarity=0.441  Sum_probs=236.6

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhc
Q 011558          139 ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (483)
Q Consensus       139 ~~~~~~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~  218 (483)
                      .+.....+.+.+||...+++|+|+.+.++++++.+.|+.+|++.|.+++++++||||.+.++++|++|..|++.++....
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            34566788999999999999999999999999999999999999999999999999987788999999999998776542


Q ss_pred             cCCCCC-CHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCe--EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCC
Q 011558          219 TNGSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG  295 (483)
Q Consensus       219 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~--v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g  295 (483)
                      ...... ..+.+....+..+++....+            |..+.  +++.+++++.+|++.|.+++++++||++++  .+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~l~~i------------m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~  151 (334)
T 2qrd_G           86 QSSSFPEAIAEIDKFRLLGLREVERKI------------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--GE  151 (334)
T ss_dssp             HHCSCGGGGGGGGSCBHHHHHHHHHHH------------TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--TT
T ss_pred             hccCCccHHHHHhhhchhhHHHHHHhh------------ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--CC
Confidence            210000 01233455666666554332            23445  899999999999999999999999999652  12


Q ss_pred             -CcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCE
Q 011558          296 -SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS  374 (483)
Q Consensus       296 -~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~  374 (483)
                       ....++|++|.+||++++......    ......+++++         ..+|.+++.++.+++++.+|++.|.++++++
T Consensus       152 ~~~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~  218 (334)
T 2qrd_G          152 TGSEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNISA  218 (334)
T ss_dssp             TTEEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSE
T ss_pred             cCccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCcE
Confidence             001399999999999988653211    01112233332         1137788999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCC
Q 011558          375 IPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGV  454 (483)
Q Consensus       375 lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~  454 (483)
                      +||+|++|+++|++|.+|+++.+..+.+...   +.++.+++.....   .  +  +++++|.+++++.+|+++|.++++
T Consensus       219 ~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~---~--~--~~~~~v~~~~~l~~~~~~m~~~~~  288 (334)
T 2qrd_G          219 VPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLKRPA---N--F--DGVHTCRATDRLDGIFDAIKHSRV  288 (334)
T ss_dssp             EEEECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTTCCT---T--C--CCCCEECTTCBHHHHHHHHHHSCC
T ss_pred             EEEEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhcccc---c--C--CCCEEECCCCcHHHHHHHHHHcCC
Confidence            9999988999999999999987765433222   3567774432000   0  0  368899999999999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          455 RRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       455 ~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      +++|||| ++|+++|+||++||++++..
T Consensus       289 ~~l~Vvd-~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          289 HRLFVVD-ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             CEEEEEC-CCCeEEEEEeHHHHHHHHHh
Confidence            9999999 57999999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=4.1e-34  Score=284.80  Aligned_cols=300  Identities=32%  Similarity=0.551  Sum_probs=237.7

Q ss_pred             HHHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCC
Q 011558          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (483)
Q Consensus       143 ~~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~  222 (483)
                      ..++.|+.||+..+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++..+........
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~  102 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL  102 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence            34567999999999999999999999999999999999999999999999999887789999999999987754321110


Q ss_pred             CCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 011558          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (483)
Q Consensus       223 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~G  302 (483)
                       ....++....+..|.....            .+|.++++++.+++++.+|++.|.+++++++||++  .++|   +++|
T Consensus       103 -~~~~~l~~~~~~~~~~~~~------------~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~---~~~G  164 (330)
T 2v8q_E          103 -VQIYELEEHKIETWREVYL------------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLY  164 (330)
T ss_dssp             -TTCCCGGGCBHHHHHHHHS------------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEE
T ss_pred             -cchhHHhhccHHHHHHHHh------------hcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEe--CCCC---cEEE
Confidence             0112334455666654332            24678899999999999999999999999999994  2235   7999


Q ss_pred             EechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccC-CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 011558          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDN  381 (483)
Q Consensus       303 iit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  381 (483)
                      ++|.+|+++++.......+ ...+...+++++.+          |. +++.++.+++++.+|++.|.+++++++||+|++
T Consensus       165 ivt~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~  233 (330)
T 2v8q_E          165 ILTHKRILKFLKLFITEFP-KPEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK  233 (330)
T ss_dssp             EECHHHHHHHHHHHSCSSS-CCGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT
T ss_pred             EEcHHHHHHHHHHHhhccC-chhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence            9999999998865432211 01122334444422          33 578899999999999999999999999999989


Q ss_pred             CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEe
Q 011558          382 DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  461 (483)
Q Consensus       382 g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd  461 (483)
                      |+++|++|.+|+++....+.+...   +.++.+++....       .|.+++++|.+++++.+|+++|.+++++++||+|
T Consensus       234 ~~l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  303 (330)
T 2v8q_E          234 GRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  303 (330)
T ss_dssp             SBEEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEEEEEEHHHHHHHHhccccccc---cCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc
Confidence            999999999999986654333222   467787664321       3456889999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHHhc
Q 011558          462 AGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       462 ~~~~~l~GiIs~~DIl~~l~~  482 (483)
                       ++|+++|+||.+||++++..
T Consensus       304 -~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          304 -EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             -TTSBEEEEEEHHHHHHHHHS
T ss_pred             -CCCcEEEEEeHHHHHHHHHh
Confidence             57999999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.98  E-value=9.7e-32  Score=260.74  Aligned_cols=269  Identities=14%  Similarity=0.293  Sum_probs=205.3

Q ss_pred             cccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHH
Q 011558          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (483)
Q Consensus       156 ~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~  235 (483)
                      ++.+.+.. .++++++.+.|+.+|++.|.+++++++||+|++.++++|++|..|++.++.....      ...+......
T Consensus         4 ~v~~~i~~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQN-KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHER   76 (280)
T ss_dssp             BGGGTSCC-SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTT
T ss_pred             hHHHHhcC-CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhcccc
Confidence            34455543 3799999999999999999999999999999866789999999999976532110      0001000000


Q ss_pred             HHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHh
Q 011558          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (483)
Q Consensus       236 ~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~  315 (483)
                      .+...   .     ...++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++..
T Consensus        77 ~~~~~---~-----~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           77 NFLAA---I-----NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD  142 (280)
T ss_dssp             CHHHH---T-----TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred             chhHH---h-----hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence            00000   0     00112256778999999999999999999999999999954   45   89999999999988754


Q ss_pred             hccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          316 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                      ....        ..            .++++|.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|+++
T Consensus       143 ~~~~--------~~------------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~  201 (280)
T 3kh5_A          143 KIDE--------NE------------VIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIK  201 (280)
T ss_dssp             GSCT--------TC------------BSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHH
T ss_pred             cCCC--------CC------------CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHH
Confidence            3211        11            3455588889999999999999999999999999999 5899999999999998


Q ss_pred             HHhcccc-ccc------ccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEE
Q 011558          396 LAKDKAY-AQI------HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE  468 (483)
Q Consensus       396 l~~~~~~-~~~------~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~  468 (483)
                      ....+.. ...      ...+.++.+             +|.+++++|.+++++.+|+++|.+++++++||+| ++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~  267 (280)
T 3kh5_A          202 LLGSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIK  267 (280)
T ss_dssp             HHTSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEE
T ss_pred             HHhhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEE
Confidence            7653211 000      001233444             6777889999999999999999999999999999 578999


Q ss_pred             EEEehHHHHHHH
Q 011558          469 GIISLSDVFRFL  480 (483)
Q Consensus       469 GiIs~~DIl~~l  480 (483)
                      |+||++||++++
T Consensus       268 Givt~~dil~~l  279 (280)
T 3kh5_A          268 GIITEKDVLKYF  279 (280)
T ss_dssp             EEEEHHHHGGGG
T ss_pred             EEEeHHHHHHhh
Confidence            999999999876

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=5.9e-31  Score=257.88  Aligned_cols=264  Identities=10%  Similarity=0.104  Sum_probs=207.9

Q ss_pred             cccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhcc
Q 011558          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (483)
Q Consensus       154 ~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~  233 (483)
                      ..++.|+|  +.++++++.+.|+.+|++.|.+++++++||+|   ++++|++|..|++..+......          ...
T Consensus        19 ~~~V~dim--~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~----------~~~   83 (296)
T 3ddj_A           19 GMNIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD----------SCS   83 (296)
T ss_dssp             CSSGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CC
T ss_pred             ccCHHHhc--cCCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc----------ccc
Confidence            46688888  44899999999999999999999999999999   6799999999998765321110          001


Q ss_pred             HHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHH
Q 011558          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (483)
Q Consensus       234 i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l  313 (483)
                      ...+.....    ..    ++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++
T Consensus        84 ~~~~~~~~~----~~----v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~  149 (296)
T 3ddj_A           84 QGDLYHIST----TP----IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY  149 (296)
T ss_dssp             HHHHHHHHT----SB----GGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred             chhhHHHhc----cc----HHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence            111111100    01    12256778899999999999999999999999999954   45   899999999998876


Q ss_pred             HhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 011558          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  393 (483)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di  393 (483)
                      .....         ..            .++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+
T Consensus       150 ~~~~~---------~~------------~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          150 KDLDE---------IF------------PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             GGSCC---------CC------------BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             hcccc---------cc------------cHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence            42211         11            3455588899999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccc---ccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEE
Q 011558          394 TALAKDKAYAQI---HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  470 (483)
Q Consensus       394 ~~l~~~~~~~~~---~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~Gi  470 (483)
                      ++.+.... ...   ...+.++.+             +|.+++++|.+++++.+|+++|.+++++++||+| ++|+++|+
T Consensus       209 ~~~~~~~~-~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Gi  273 (296)
T 3ddj_A          209 IKQLAKAV-DKLDPDYFYGKVVKD-------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGI  273 (296)
T ss_dssp             HHHHHHHH-HHTCTHHHHTCBHHH-------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEE
T ss_pred             HHHHHHHH-hhcChhhhcCcCHHH-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEE
Confidence            98665221 110   011244555             6777889999999999999999999999999999 57999999


Q ss_pred             EehHHHHHHHhc
Q 011558          471 ISLSDVFRFLLG  482 (483)
Q Consensus       471 Is~~DIl~~l~~  482 (483)
                      ||++||++++..
T Consensus       274 it~~Dil~~l~~  285 (296)
T 3ddj_A          274 ITERDLLIALHH  285 (296)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EcHHHHHHHHHH
Confidence            999999999863

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.96  E-value=8.3e-29  Score=240.55  Aligned_cols=263  Identities=17%  Similarity=0.251  Sum_probs=180.3

Q ss_pred             ccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHH
Q 011558          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (483)
Q Consensus       157 ~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~  236 (483)
                      +.|+|  ..++++++.+.|+.+|++.|.++++.++||+|.+ ++++|++|..|++..+..       .            
T Consensus         3 v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~~-------~------------   60 (282)
T 2yzq_A            3 VKTIM--TQNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDE-------E------------   60 (282)
T ss_dssp             HHHHS--EESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC--------------------------
T ss_pred             hHHhc--cCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhcc-------C------------
Confidence            34455  2468899999999999999999999999999974 679999999998743210       0            


Q ss_pred             HHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH-HHHh
Q 011558          237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICR  315 (483)
Q Consensus       237 ~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~-~l~~  315 (483)
                                 ..    ..++.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..|+++ ++..
T Consensus        61 -----------~v----~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           61 -----------QL----AMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTT
T ss_pred             -----------CH----HHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhc
Confidence                       00    1134566889999999999999999999999999964   35   7999999999998 6542


Q ss_pred             hccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH-
Q 011558          316 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-  394 (483)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~-  394 (483)
                      .  .     .....            .++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|..|++ 
T Consensus       120 ~--~-----~~~~~------------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          120 S--E-----KYKGV------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR  180 (282)
T ss_dssp             C--S-----GGGGC------------BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred             c--C-----CcccC------------cHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhh
Confidence            1  0     00111            34556888899999999999999999999999999999889999999999998 


Q ss_pred             -----HHHhccc--ccc-c-ccCCccHHHHHhc--CCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeC
Q 011558          395 -----ALAKDKA--YAQ-I-HLDEMNIHQALQL--GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA  462 (483)
Q Consensus       395 -----~l~~~~~--~~~-~-~l~~~~v~~~l~~--~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~  462 (483)
                           +......  ... . .+...........  ......+. ++|.+++++|.+++++.+|+++|.+++++++||+| 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-  259 (282)
T 2yzq_A          181 DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-  259 (282)
T ss_dssp             CGGGCC--------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-
T ss_pred             hhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-
Confidence                 3221000  000 0 0000000000000  00011222 28888999999999999999999999999999999 


Q ss_pred             CCCeEEEEEehHHHHHHHhc
Q 011558          463 GSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       463 ~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ++|+++|+||++||++++..
T Consensus       260 ~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          260 GEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             TTTEEEEEEEHHHHGGGGCC
T ss_pred             CCCCEEEEEeHHHHHHHHHh
Confidence            46899999999999998753

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.91  E-value=2.7e-24  Score=172.84  Aligned_cols=86  Identities=43%  Similarity=0.835  Sum_probs=77.4

Q ss_pred             cCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCC
Q 011558           16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV   95 (483)
Q Consensus        16 ~~~~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~   95 (483)
                      ..+.++||+|+|.++|++|+|+|+||+|+ .++|.+.   .|.|+++++|++|.|+|||+|||+|++||.+|++.|+.|+
T Consensus         6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~   81 (96)
T 1z0n_A            6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT   81 (96)
T ss_dssp             ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred             CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence            34578999999999999999999999999 6899984   4899999999999999999999999999999999999999


Q ss_pred             eeeEEEeccCC
Q 011558           96 VNCVYIAVPQP  106 (483)
Q Consensus        96 ~nn~~~v~~~~  106 (483)
                      .||+|.| +++
T Consensus        82 ~Nnvi~V-~~~   91 (96)
T 1z0n_A           82 VNNIIQV-KKT   91 (96)
T ss_dssp             EEEEEEE-CSC
T ss_pred             EeEEEEE-cCC
Confidence            9999999 654

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.90  E-value=7.7e-24  Score=199.09  Aligned_cols=88  Identities=32%  Similarity=0.663  Sum_probs=81.2

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeee
Q 011558           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (483)
Q Consensus        19 ~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn   98 (483)
                      .++||+|+|+++|++|+|+|+|+||++.++|.+.++.+|.|++++.|+||.|+|||+|||+|++|+.+|++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            47999999999999999999999999878999865558999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCC
Q 011558           99 VYIAVPQPD  107 (483)
Q Consensus        99 ~~~v~~~~~  107 (483)
                      +|.| .+++
T Consensus        82 vi~V-~~~~   89 (252)
T 2qlv_B           82 YIEV-RQPE   89 (252)
T ss_dssp             EEEE-CC--
T ss_pred             eeec-cCcc
Confidence            9999 7654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=8.3e-23  Score=197.68  Aligned_cols=195  Identities=18%  Similarity=0.329  Sum_probs=155.9

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccc-ccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ-PVSSI  334 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~-~v~~l  334 (483)
                      ++.++++++++++|+.+|++.|.+++++++||++  .++|   +++|++|.+||++++......     .++.. ....+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d--~~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN--AGNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEEC--TTTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEE--CCCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            4677899999999999999999999999999994  3345   899999999999987432110     00000 00000


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHH
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  414 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~  414 (483)
                       +.....+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++........     ..++.+
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE-----NEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT-----TCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC-----CCCHHH
Confidence             11123367788999999999999999999999999999999999999999999999999876543221     123333


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          415 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       415 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                   +|.+++.++.+++++.++++.|.+++++++||++  +|+++|+||.+||++++.
T Consensus       153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence                         6767888999999999999999999999999996  599999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.88  E-value=3.2e-22  Score=195.66  Aligned_cols=189  Identities=18%  Similarity=0.224  Sum_probs=155.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++++.+|++.|.+++++++||++     +   +++|++|.+||++++......        ....+.+ 
T Consensus        25 im~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~~~~~-   87 (296)
T 3ddj_A           25 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCSQGDL-   87 (296)
T ss_dssp             TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CCHHHH-
T ss_pred             hccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------cccchhh-
Confidence            5677899999999999999999999999999993     4   899999999999987432111        0111111 


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  415 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~  415 (483)
                      +.....+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++......      ...++.+ 
T Consensus        88 ~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~~v~~-  160 (296)
T 3ddj_A           88 YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIFPVKV-  160 (296)
T ss_dssp             HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCCBHHH-
T ss_pred             HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------ccccHHH-
Confidence            011123567779999999999999999999999999999999999999999999999987554221      1346666 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          416 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       416 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                  +|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++.
T Consensus       161 ------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          161 ------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             ------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             ------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence                        5666788999999999999999999999999999 5799999999999998864

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.87  E-value=2.6e-22  Score=195.34  Aligned_cols=121  Identities=25%  Similarity=0.466  Sum_probs=94.8

Q ss_pred             CCcceEEEEEecC-CCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCee-eCCCC
Q 011558           17 GSILVPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV-SGNYG   94 (483)
Q Consensus        17 ~~~~~~~~f~~~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~-~~~~g   94 (483)
                      +....||+|+|++ +|++|+|+||||||+..+||.+.+. +|.|++++.||||.|+|||+|||+|++||++|.. +|+.|
T Consensus       166 ~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~~-~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G  244 (294)
T 3nme_A          166 GLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDG  244 (294)
T ss_dssp             CCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECTT-TCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTS
T ss_pred             ccccccceeeeccCCCCEEEEEEeccCCCCcccceEcCC-CCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCC
Confidence            4567899999999 6899999999999997789999653 6999999999999999999999999999999976 79999


Q ss_pred             CeeeEEEeccCCCCCCCCCCCCCCCCcccccccccCCCCccccHHHHHHHHHHHHHhhcc
Q 011558           95 VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLST  154 (483)
Q Consensus        95 ~~nn~~~v~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~  154 (483)
                      ++||+|.| ++ +..+.        .-.+.+...  ..-|.+.+++    |..|++||..
T Consensus       245 ~~nn~~~v-~~-~~~~~--------~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~  288 (294)
T 3nme_A          245 HTNNYAKV-VD-DPTSV--------DGTTRERLS--SEDPELLEEE----RSKLIQFLET  288 (294)
T ss_dssp             CCEEEEEE-CC-CCCTT--------CTTHHHHHS--SSSCCCCHHH----HHHHHHHHHH
T ss_pred             CEeEEEEE-CC-CCcch--------hHHHHHHhh--cCCccccHHH----HHHHHHHHHh
Confidence            99999999 64 22221        112221111  1125666666    7788888853

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.85  E-value=7.9e-21  Score=188.05  Aligned_cols=201  Identities=17%  Similarity=0.272  Sum_probs=151.1

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      ...+++.++.++++.+|++.|.+++++++||+++  +.+   +++|++|.+|++.++...+..... .    ..+.....
T Consensus        38 ~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~--~~~---~lvGilt~~Dl~~~l~~~~~~~~~-~----~~l~~~~~  107 (323)
T 3t4n_C           38 VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDS--KTS---RFAGLLTTTDFINVIQYYFSNPDK-F----ELVDKLQL  107 (323)
T ss_dssp             SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHCGGG-G----GGGGGCBH
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHcCcch-h----HHHHHHHH
Confidence            3567899999999999999999999999999964  334   899999999999987543322100 0    01111110


Q ss_pred             cccc--cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHhcccccccccCC
Q 011558          337 GTWV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDE  409 (483)
Q Consensus       337 ~~~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~-----lvGiit~~di~~l~~~~~~~~~~l~~  409 (483)
                      ..+.  .++.++|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|+++.+...... ..+.+
T Consensus       108 ~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~  186 (323)
T 3t4n_C          108 DGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLK  186 (323)
T ss_dssp             HHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCC
T ss_pred             HHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhh
Confidence            0110  1234557888999999999999999999999999999998775     99999999999866532211 11223


Q ss_pred             ccHHHHHhcCCCCCCCccc---CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          410 MNIHQALQLGQDANPSLGF---NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       410 ~~v~~~l~~~~~~~~~~~~---m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .++.+             +   |.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus       187 ~~v~~-------------~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~~  248 (323)
T 3t4n_C          187 IPIGD-------------LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKG  248 (323)
T ss_dssp             SBGGG-------------TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHHT
T ss_pred             CcHHH-------------cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHhh
Confidence            44544             4   667899999999999999999999999999999 57999999999999998753

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.84  E-value=1.3e-20  Score=187.18  Aligned_cols=203  Identities=18%  Similarity=0.251  Sum_probs=156.8

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      ..+++++++++++.+|++.|.+++++++||+++  ..+   +++|++|.+|+++.+...+.....    ....+....+.
T Consensus        44 ~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~--~~~---~~vGivt~~Dll~~l~~~~~~~~~----~~~~l~~~~~~  114 (330)
T 2v8q_E           44 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSALV----QIYELEEHKIE  114 (330)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHTT----TCCCGGGCBHH
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHhcccc----chhHHhhccHH
Confidence            678999999999999999999999999999965  224   799999999999887653311000    00112222233


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccc--ccccCCccHHH
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQ  414 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~--~~~l~~~~v~~  414 (483)
                      .+...++++|.+++.++.+++++.+|+++|.+++++++||+|+ +|+++|++|.+|+++........  ...+...++.+
T Consensus       115 ~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~  194 (330)
T 2v8q_E          115 TWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEE  194 (330)
T ss_dssp             HHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHH
T ss_pred             HHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHH
Confidence            3444566789999999999999999999999999999999998 89999999999999866432110  00111234444


Q ss_pred             HHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          415 ALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       415 ~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                      ..           +|. ++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++.
T Consensus       195 ~~-----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          195 LQ-----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             HT-----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred             hc-----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence            21           243 5788999999999999999999999999999 5799999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.82  E-value=2.4e-20  Score=180.74  Aligned_cols=172  Identities=16%  Similarity=0.240  Sum_probs=128.6

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      |.++++++++++++.+|++.|.+++++++||+++   +|   +++|++|..|+++.+.             ..       
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~---~~~Giv~~~dl~~~~~-------------~~-------   60 (282)
T 2yzq_A            7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------EE-------   60 (282)
T ss_dssp             SEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC---------------------------
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhhhc-------------cC-------
Confidence            4567888999999999999999999999999953   45   8999999999986431             12       


Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccCCccHHHH
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQA  415 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~-l~~~~~~~~~~l~~~~v~~~  415 (483)
                           +++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++ .+..+...    .+.++.+ 
T Consensus        61 -----~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~----~~~~v~~-  130 (282)
T 2yzq_A           61 -----QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKY----KGVEIEP-  130 (282)
T ss_dssp             --------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGG----GGCBSTT-
T ss_pred             -----CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCc----ccCcHHH-
Confidence                 344558888899999999999999999999999999998899999999999998 55432100    0123333 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 011558          416 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  477 (483)
Q Consensus       416 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl  477 (483)
                                  +|..+++++.+++++.++++.|.+++++++||+| ++|+++|+||.+|++
T Consensus       131 ------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 ------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL  179 (282)
T ss_dssp             ------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred             ------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence                        6777889999999999999999999999999999 579999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.82  E-value=9.6e-20  Score=181.09  Aligned_cols=205  Identities=14%  Similarity=0.147  Sum_probs=150.4

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      ..+++++++++++.+|++.|.+++++++||+++  +.+   +++|+++.+|+++++......... ...+ ..+....+.
T Consensus        31 ~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~~~-~~~~~~~~~  103 (334)
T 2qrd_G           31 SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF-PEAI-AEIDKFRLL  103 (334)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC-GGGG-GGGGSCBHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC-ccHH-HHHhhhchh
Confidence            346889999999999999999999999999964  334   899999999999877543210000 0000 011111111


Q ss_pred             ccccccccccCCCe--eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHhcccccccccCCc
Q 011558          338 TWVPRIGEANGRPF--AMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDEM  410 (483)
Q Consensus       338 ~~~~~v~~~m~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~-----lvGiit~~di~~l~~~~~~~~~~l~~~  410 (483)
                      .+....+++|.+++  +++.+++++.+|++.|.+++++++||+|++|.     ++|++|.+|+++........ ..+...
T Consensus       104 ~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~-~~~~~~  182 (334)
T 2qrd_G          104 GLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE-TAMLRV  182 (334)
T ss_dssp             HHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG-GGGCCC
T ss_pred             hHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc-hhhhhC
Confidence            22112234566666  89999999999999999999999999997654     99999999999866532111 111123


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       411 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                      ++.+..          .+|.+++.++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++.
T Consensus       183 ~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          183 PLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             BGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHT
T ss_pred             cHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhh
Confidence            333310          03667888999999999999999999999999999 5799999999999999864

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.80  E-value=4.9e-20  Score=165.19  Aligned_cols=137  Identities=17%  Similarity=0.299  Sum_probs=105.2

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-ccc--CCcc---HHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-IHL--DEMN---IHQA  415 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~-~~l--~~~~---v~~~  415 (483)
                      +|+++|+++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++......... ..+  ....   ....
T Consensus        19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 4esy_A           19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL   98 (170)
T ss_dssp             BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence            466779999999999999999999999999999999999999999999999986432111000 000  0000   0111


Q ss_pred             HhcCCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          416 LQLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       416 l~~~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ....  ...+. ++|.+++++|.+++++.+|+++|.+++++++||+|  +|+++|+||++||+++|+.
T Consensus        99 ~~~~--~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           99 FETG--RKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHH--TTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred             hccc--cccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence            1000  01122 28888999999999999999999999999999999  4999999999999998864

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=4.5e-18  Score=148.55  Aligned_cols=119  Identities=16%  Similarity=0.305  Sum_probs=105.3

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.       +.++.+    
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   92 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----   92 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence            56677988  89999999999999999999999999999987 89999999999998654331       234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +| ++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||++++++
T Consensus        93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred             ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     67 6789999999999999999999999999999 57999999999999999976

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.76  E-value=2.1e-18  Score=152.34  Aligned_cols=122  Identities=18%  Similarity=0.276  Sum_probs=100.2

Q ss_pred             ccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          344 GEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       344 ~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++|.  .+++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........+.+.++.+       
T Consensus        18 ~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~-------   90 (156)
T 3k6e_A           18 ETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH-------   90 (156)
T ss_dssp             GGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG-------
T ss_pred             HHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH-------
Confidence            34465  478999999999999999999999999999999999999999999986653322221122334444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|.++++++.+++++.+|+++|.++++  +|||| ++|+++|+||++||++++.
T Consensus        91 ------im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           91 ------MTKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             ------TCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------hhcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHH
Confidence                  788889999999999999999988764  99999 5899999999999999884

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.76  E-value=5.5e-18  Score=144.66  Aligned_cols=120  Identities=15%  Similarity=0.281  Sum_probs=104.4

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+++....+.      .+.++.+    
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~----   76 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGA----   76 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHH----
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHH----
Confidence            46677984  56789999999999999999999999999987 89999999999998765331      1356676    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +| ++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||++++++
T Consensus        77 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           77 ---------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ---------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence                     55 3578999999999999999999999999999 57999999999999999986

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.75  E-value=7.2e-18  Score=144.06  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=103.4

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+++ +|+++|+++.+|+++....+..    +...++.+    
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~----   74 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLR----   74 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHH----
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHH----
Confidence            4566785  36889999999999999999999999999975 5899999999999987654321    11234555    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +| ++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||++++++
T Consensus        75 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           75 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ---------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence                     45 4678999999999999999999999999999 57999999999999999986

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=6.7e-18  Score=142.10  Aligned_cols=119  Identities=19%  Similarity=0.368  Sum_probs=104.8

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++....+.        .++.+       
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~--------~~v~~-------   66 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK--------KTIEE-------   66 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTC--------CBGGG-------
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc--------cCHHH-------
Confidence            456779999999999999999999999999999999999999999999999998665321        23444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|.++++++.+++++.+|+++|.+++.+++||+| ++|+++|+||..||++++.+
T Consensus        67 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred             ------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence                  6666788999999999999999999999999999 57999999999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.74  E-value=3.6e-18  Score=145.19  Aligned_cols=120  Identities=13%  Similarity=0.369  Sum_probs=102.0

Q ss_pred             ccccccCCC--eeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+.  +.++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++......      .+.++.+    
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~----   73 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDK----   73 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHH----
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHH----
Confidence            456778854  8999999999999999999999999999987 89999999999987553221      1356666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|. +++++.+++++.+|+++|.+++++++||+| ++|+++|+||++||++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 ---------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ---------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     453 467899999999999999999999999999 57999999999999999876

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.73  E-value=2.4e-17  Score=147.91  Aligned_cols=119  Identities=18%  Similarity=0.329  Sum_probs=105.4

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+++....+.       +.++.+    
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----  111 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD----  111 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence            5677798  678999999999999999999999999999987 99999999999998665331       244554    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +| ++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||++++++
T Consensus       112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence                     67 7889999999999999999999999999999 57999999999999999875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.73  E-value=9.6e-18  Score=142.99  Aligned_cols=118  Identities=14%  Similarity=0.325  Sum_probs=101.1

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+++.....        +.++.+    
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~----   73 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS----   73 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence            4667788  678899999999999999999999999999985 8999999999998754321        234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|. +++++.+++++.+|+++|.+++.+++||+| ++|+++|+||++||++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred             ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     553 478999999999999999999999999999 57999999999999999976

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.73  E-value=1.8e-17  Score=143.41  Aligned_cols=123  Identities=17%  Similarity=0.212  Sum_probs=104.5

Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  416 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l  416 (483)
                      +..+++++|.+++.++.+++++.+|+++|.+++++++||+|++|  +++|+++.+|+++....+...     +.++.+  
T Consensus         3 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~--   75 (141)
T 2rih_A            3 MAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-----DGPAMP--   75 (141)
T ss_dssp             --CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-----TSBSGG--
T ss_pred             cceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCC-----CCCHHH--
Confidence            34467788999999999999999999999999999999999888  999999999999865533111     234444  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                 +|.++++++.++ ++.+|+++|.+++++++||+| ++|+++|+||.+||++++.
T Consensus        76 -----------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           76 -----------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             -----------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             -----------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence                       677789999999 999999999999999999999 5799999999999987653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.73  E-value=3.7e-17  Score=138.03  Aligned_cols=121  Identities=19%  Similarity=0.243  Sum_probs=104.8

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+++.+|+++....+..    ..+.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~-------   69 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   69 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHH-------
Confidence            35667988999999999999999999999999999999 8999999999999986653321    12356676       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|.+++.++.+++++.+++++|.+++++++||+| + |+++|+||.+||++++.+
T Consensus        70 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC-
T ss_pred             ------HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                  5666789999999999999999999999999999 5 999999999999998864

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.72  E-value=6.9e-17  Score=138.95  Aligned_cols=122  Identities=19%  Similarity=0.355  Sum_probs=105.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH-HHHHhcccccccccCCccHHHHHhcCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDEMNIHQALQLGQ  420 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di-~~l~~~~~~~~~~l~~~~v~~~l~~~~  420 (483)
                      +++++|.+++.++.+++++.+|+++|.+++.+++||+|++|+++|+++.+|+ ++....+..     .+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   77 (138)
T 2p9m_A            9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYT-----LETTIGD------   77 (138)
T ss_dssp             BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCC-----SSCBHHH------
T ss_pred             CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhccc-----CCcCHHH------
Confidence            4566798899999999999999999999999999999988999999999999 876543221     1356666      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCC-----CCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          421 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPG-----VRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       421 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~-----~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                             +|.+++.++.+++++.+|+++|.+++     ++++||+| ++|+++|+||.+||++++..
T Consensus        78 -------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           78 -------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             -------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence                   56667889999999999999999999     99999999 57999999999999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.72  E-value=7.7e-18  Score=145.01  Aligned_cols=121  Identities=13%  Similarity=0.275  Sum_probs=101.3

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.  +++.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+||++........     +.++.+    
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~-----~~~v~~----   74 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGD-----SDDVKK----   74 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGG-----GCCGGG----
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCC-----CcCHHH----
Confidence            4567787  568899999999999999999999999999987 8999999999998755421111     234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|. +++++.+++++.+|+++|.+++++++||+| ++|+++|+||++||++++++
T Consensus        75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     664 488999999999999999999999999999 57999999999999998865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.72  E-value=2e-17  Score=145.40  Aligned_cols=119  Identities=18%  Similarity=0.289  Sum_probs=103.7

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHh
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIV-DD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  417 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~-~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~  417 (483)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+ |+ +|+++|++|.+|+++....+.       +.++.+   
T Consensus        21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---   90 (153)
T 3oco_A           21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST---   90 (153)
T ss_dssp             BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG---
T ss_pred             EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH---
Confidence            45666886  78999999999999999999999999999 65 489999999999998654331       234444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                +| ++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||++++++
T Consensus        91 ----------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           91 ----------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ----------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             ----------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence                      67 6899999999999999999999999999999 57999999999999999875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.71  E-value=3.4e-17  Score=143.01  Aligned_cols=127  Identities=22%  Similarity=0.350  Sum_probs=103.4

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc---------cccCCc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ---------IHLDEM  410 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~---------~~l~~~  410 (483)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|++.+........         ....+.
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            56777987  7999999999999999999999999999999899999999999986432110000         000123


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       411 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ++.+             +|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        86 ~v~~-------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           86 LVGD-------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BHHH-------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHH-------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            4444             6666788999999999999999999999999999 57999999999999999864

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.71  E-value=8.7e-17  Score=138.37  Aligned_cols=121  Identities=18%  Similarity=0.355  Sum_probs=104.0

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccCCccHHHHHhcCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  420 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~-l~~~~~~~~~~l~~~~v~~~l~~~~  420 (483)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+++ +...+..     .+.++.+      
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   76 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-----YDIPVER------   76 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC-----TTSBGGG------
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCc-----ccCCHHH------
Confidence            566779999999999999999999999999999999998899999999999974 4432211     1234444      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          421 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       421 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                             +|.+++.++.+++++.+|+++|.+++++++ |+| ++|+++|+||.+||++++..
T Consensus        77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHHC
T ss_pred             -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHHH
Confidence                   677788999999999999999999999999 999 47999999999999998864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.71  E-value=7.7e-17  Score=142.77  Aligned_cols=125  Identities=22%  Similarity=0.228  Sum_probs=104.8

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc----cccCCccHHHHHh
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ----IHLDEMNIHQALQ  417 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~----~~l~~~~v~~~l~  417 (483)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+||++.........    ....+.++.+   
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   82 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   82 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH---
Confidence            567779889999999999999999999999999999998899999999999998654221100    0011345555   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                +|.+++++|.+++++.+|+++|.+++++++||+| + |+++|+||.+||++++.
T Consensus        83 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           83 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                      6777899999999999999999999999999999 4 99999999999999875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.71  E-value=6.6e-17  Score=138.23  Aligned_cols=120  Identities=18%  Similarity=0.266  Sum_probs=104.2

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+++.+|+++....+...     +.++.+       
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCc-----ccCHHH-------
Confidence            46777999999999999999999999999999999999 89999999999998866533111     234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|.+++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence                  6666788999999999999999999999999999 5799999999999999875

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.71  E-value=1.8e-17  Score=140.93  Aligned_cols=121  Identities=13%  Similarity=0.166  Sum_probs=103.9

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|+ |+++|++|.+|+++....+...     ..++.+       
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   72 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTV-----KEKLGE-------   72 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCT-----TCBCCG-------
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcc-----cCcHHH-------
Confidence            567779999999999999999999999999999999998 9999999999998754322110     122333       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|.+++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus        73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHHT
T ss_pred             ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence                  6777888999999999999999999999999999 57999999999999999854

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=4.6e-17  Score=144.93  Aligned_cols=123  Identities=20%  Similarity=0.347  Sum_probs=105.1

Q ss_pred             ccccccCC---CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR---PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+   +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+||++.+..+....   .+.++.+    
T Consensus        25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~----   97 (165)
T 3fhm_A           25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAAS---LQQSVSV----   97 (165)
T ss_dssp             BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGG---GTSBGGG----
T ss_pred             CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCcc---ccCCHHH----
Confidence            56677874   7899999999999999999999999999999999999999999998655332111   1244554    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|.+++++|.+++++.+|+++|.+++++++||+| + |+++|+||..||++++..
T Consensus        98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTTC
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                     6777889999999999999999999999999999 5 999999999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.70  E-value=7.8e-17  Score=142.52  Aligned_cols=122  Identities=17%  Similarity=0.359  Sum_probs=103.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.++ +++.+++++.+|+++|.+++++++||+|++|+++|++|.+||++....+..    ..+.++.+       
T Consensus        18 ~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-------   85 (159)
T 3fv6_A           18 QVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHI-------   85 (159)
T ss_dssp             BGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGG-------
T ss_pred             CHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHH-------
Confidence            456678875 599999999999999999999999999999999999999999986532211    11345555       


Q ss_pred             CCCCcccCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCC---eEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK---RVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~---~l~GiIs~~DIl~~l~~  482 (483)
                            +|.+  +++++.+++++.+|+++|.+++++++||+| ++|   +++|+||.+||++++..
T Consensus        86 ------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           86 ------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHHH
Confidence                  6665  788999999999999999999999999999 467   99999999999999853

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.70  E-value=6.9e-17  Score=141.21  Aligned_cols=118  Identities=12%  Similarity=0.250  Sum_probs=103.4

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++....+..    ..+.++.+     
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-----   99 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIAD-----   99 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHH-----
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHH-----
Confidence            56777998  89999999999999999999999999999999999999999999987654321    12466777     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  478 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~  478 (483)
                              +|.+++++|.+++++.+|+++|.+++++++||+|+  ++++|+||.+||++
T Consensus       100 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A          100 --------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             --------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             --------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence                    56567889999999999999999999999999993  49999999999975

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.70  E-value=2.9e-17  Score=140.48  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=103.5

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccCCccHHHHHhcCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  420 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~-l~~~~~~~~~~l~~~~v~~~l~~~~  420 (483)
                      +++++|.+++.++.+++++.+|+++|.+++.+++||+|++|+++|+++.+|++. +...+..    ..+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~------   78 (133)
T 1y5h_A            9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGE------   78 (133)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHH------
T ss_pred             CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHH------
Confidence            456678888999999999999999999999999999998899999999999984 4443211    12356777      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          421 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       421 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                             +|.++++++.+++++.+|+++|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus        79 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           79 -------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             -------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred             -------HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                   4555788999999999999999999999999999 4 899999999999998754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.70  E-value=1.1e-16  Score=138.58  Aligned_cols=126  Identities=25%  Similarity=0.488  Sum_probs=101.4

Q ss_pred             ccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCC
Q 011558          346 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  425 (483)
Q Consensus       346 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  425 (483)
                      +|.+++.++.+++++.+|++.|.+++++++||+|++|+++|+++.+|+++....+.+..   .+.++.+++.....    
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~~m~~~~~----   88 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND---LSLSVGEALMRRSD----   88 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccccc---CCccHHHHHhcCcc----
Confidence            37778999999999999999999999999999998899999999999998665432211   23577775532100    


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          426 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       426 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                         -..++.++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        89 ---~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           89 ---DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             ---ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence               001478999999999999999999999999999 57999999999999999864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.69  E-value=7.3e-17  Score=141.00  Aligned_cols=125  Identities=21%  Similarity=0.222  Sum_probs=102.9

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-cccCCccHHHHHhc
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-IHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~-~~l~~~~v~~~l~~  418 (483)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+||++......... ......++.+    
T Consensus        16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   91 (150)
T 3lqn_A           16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ----   91 (150)
T ss_dssp             BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred             ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence            4566688  45899999999999999999999999999999999999999999998664321110 0111233443    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|.++++++.+++++.+|+++|.++++  +|||| ++|+++|+||.+||++++..
T Consensus        92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHHH
Confidence                     777789999999999999999999987  99999 57999999999999998853

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.69  E-value=2e-16  Score=140.10  Aligned_cols=132  Identities=14%  Similarity=0.221  Sum_probs=104.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|+  +|+++|++|..|++.....+..........++.+++...
T Consensus        14 ~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~   93 (164)
T 2pfi_A           14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG   93 (164)
T ss_dssp             BHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT
T ss_pred             CHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc
Confidence            566779999999999999999999999999999999996  799999999999998664332111111235667755431


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .       .....+++|.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++.+
T Consensus        94 ~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           94 C-------PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             C-------CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             c-------cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence            1       0001167899999999999999999999999999  4999999999999998753

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.68  E-value=1.6e-16  Score=144.00  Aligned_cols=124  Identities=19%  Similarity=0.279  Sum_probs=105.3

Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCC
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  420 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~  420 (483)
                      .+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+++.+||+..........   ...++.+      
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~---~~~~v~~------   79 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKP---DEVPIRL------   79 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCG---GGSBGGG------
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCc---ccCCHHH------
Confidence            3567779999999999999999999999999999999998899999999999988654211100   1234444      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          421 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       421 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                             +|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||..||++++.
T Consensus        80 -------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           80 -------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             -------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             -------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                   6777889999999999999999999999999999 5799999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.68  E-value=5.4e-17  Score=146.14  Aligned_cols=138  Identities=22%  Similarity=0.363  Sum_probs=102.3

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc--------c--cccCC
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q--IHLDE  409 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~--------~--~~l~~  409 (483)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|+++.+||+++.......        .  ..+..
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            45677887  789999999999999999999999999999999999999999998522100000        0  00000


Q ss_pred             c-cHHHHHhcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          410 M-NIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       410 ~-~v~~~l~~~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      . .....+..  ....+.+ +|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        85 ~~~~~~~~~~--~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           85 FNELQKLISK--TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             HHHHHHHHHT--TTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             hHHHHHHHhc--cccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHHH
Confidence            0 00000000  0111222 6777788999999999999999999999999999 57999999999999998853

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.68  E-value=2e-16  Score=135.61  Aligned_cols=121  Identities=12%  Similarity=0.244  Sum_probs=102.7

Q ss_pred             ccccccC---CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccCCccHHHHHh
Q 011558          342 RIGEANG---RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQ  417 (483)
Q Consensus       342 ~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~-l~~~~~~~~~~l~~~~v~~~l~  417 (483)
                      +++++|.   +++.++.+++++.+|++.|.+++++++||+| +|+++|+++.+|+++ +...+..    ..+.++.+   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~---   78 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP----VKDTQVKE---   78 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC----GGGSBGGG---
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCC----cccCCHHH---
Confidence            4566788   8899999999999999999999999999999 899999999999986 3332210    11244444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                +|.+++.++.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++.+
T Consensus        79 ----------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           79 ----------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ----------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ----------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence                      6777889999999999999999999999999999  4999999999999998864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.68  E-value=3.4e-16  Score=138.01  Aligned_cols=125  Identities=9%  Similarity=0.142  Sum_probs=104.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCE-EEEEcCCCcEEEEEeHHHHHHHHhccc---ccc--------cccCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSS-IPIVDDNDSLLDIYSRSDITALAKDKA---YAQ--------IHLDE  409 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~g~lvGiit~~di~~l~~~~~---~~~--------~~l~~  409 (483)
                      +++++|.+++.++.+++++.+|+++|.+++++. +||+|++ +++|++|..||++......   ...        ....+
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            567779999999999999999999999999999 9999977 9999999999998543110   000        00112


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          410 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       410 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .++.+             +|.+ ++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHHH
Confidence            34444             6777 88999999999999999999999999999 57999999999999998864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.67  E-value=3e-16  Score=138.14  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=102.7

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-ccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~-~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  ++.++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++...... +........++.+    
T Consensus        12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   87 (157)
T 2emq_A           12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----   87 (157)
T ss_dssp             BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred             cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence            45666876  7889999999999999999999999999998899999999999998654321 1000111233443    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|.++++++.+++++.+|+++|.++++  +|||| ++|+++|+||.+||++++..
T Consensus        88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHH
T ss_pred             ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHH
Confidence                     677789999999999999999999987  99999 57999999999999998753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.67  E-value=3.3e-16  Score=140.65  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=100.5

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|++ |+++|+++.+||+.....+.       ..++.     
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~-----  104 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN-----  104 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG-----
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH-----
Confidence            4566686  468899999999999999999999999999976 89999999999998654321       12222     


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                |.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||++.+++
T Consensus       105 ----------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          105 ----------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ----------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             ----------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence                      223678999999999999999999999999999 57999999999999999976

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.67  E-value=2.6e-16  Score=139.01  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=103.5

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-ccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~-~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  ++.++.+++++.+|+++|.+++++++||+|++|+++|++|..||+....... +........++.+    
T Consensus        15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~----   90 (159)
T 1yav_A           15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   90 (159)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----
Confidence            45566877  8899999999999999999999999999998899999999999998665321 1111122356666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                               +|.++++++.+++++.+|+++|.++++  +||+| ++|+++|+||++||++++.
T Consensus        91 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           91 ---------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                     666678999999999999999999987  99999 4799999999999999875

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.66  E-value=3.7e-16  Score=137.65  Aligned_cols=123  Identities=13%  Similarity=0.261  Sum_probs=104.3

Q ss_pred             cccccccC------CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHH
Q 011558          341 PRIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  414 (483)
Q Consensus       341 ~~v~~~m~------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~  414 (483)
                      .+++++|.      +++.++.+++++.+|+++|.+++++++||++ +|+++|+++.+|+++.+......   ..+.++.+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~   82 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATRVEE   82 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCBHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccCHHH
Confidence            35677787      5679999999999999999999999999965 89999999999999865432211   12466777


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          415 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       415 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                   +|.++++++.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++..
T Consensus        83 -------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           83 -------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             -------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHT
T ss_pred             -------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence                         5666788999999999999999999999999999  4999999999999999864

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.66  E-value=6e-16  Score=142.84  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=102.6

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhC---CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQA---DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|+++++++.+++++.+|++.|.+.   +++.+||+|++|+++|+++.+|++...          .+.++.+    
T Consensus        55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~----  120 (205)
T 3kxr_A           55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS----  120 (205)
T ss_dssp             CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG----
T ss_pred             hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH----
Confidence            56777999999999999999999999987   789999999999999999999986421          1234454    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                               +|.++++++.+++++.+|+++|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       121 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          121 ---------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             ---------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                     7877899999999999999999999999999999 5799999999999999874

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.65  E-value=1.4e-16  Score=142.51  Aligned_cols=156  Identities=17%  Similarity=0.239  Sum_probs=113.2

Q ss_pred             HHHHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCC
Q 011558          142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (483)
Q Consensus       142 ~~~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~  221 (483)
                      +..++.+...|++.++.|+|  +.++++++.+.|+.+|++.|.++++.++||+|.+ ++++|++|..|++..+.....  
T Consensus         5 ~~~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~--   79 (170)
T 4esy_A            5 QARRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI--   79 (170)
T ss_dssp             HHHHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH--
T ss_pred             HHHHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc--
Confidence            34567788889999999999  5689999999999999999999999999999975 569999999998753311000  


Q ss_pred             CCCCHHH-Hhh-ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcce
Q 011558          222 SNLTEEE-LET-HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  299 (483)
Q Consensus       222 ~~l~~~~-l~~-~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~  299 (483)
                        ....+ +.. ...............    ..++.+|.++++++.+++++.+|+++|.+++++++||+++    |   +
T Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~  146 (170)
T 4esy_A           80 --YEASEILSRAIPAPEVEHLFETGRK----LTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD----G---V  146 (170)
T ss_dssp             --HHHHHHHTTTSCHHHHHHHHHHHTT----CBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET----T---E
T ss_pred             --cchhhhhhhccchhhHHhhhccccc----cchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC----C---E
Confidence              00000 000 001111111111000    0011257889999999999999999999999999999953    5   8


Q ss_pred             EEEEechhhHHHHHHh
Q 011558          300 ILYLASLSDILKCICR  315 (483)
Q Consensus       300 l~Giit~~dIl~~l~~  315 (483)
                      ++|+||.+||++++..
T Consensus       147 lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          147 PVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             EEEEEEHHHHTTTSCC
T ss_pred             EEEEEEHHHHHHHHHh
Confidence            9999999999998753

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.65  E-value=3e-16  Score=138.32  Aligned_cols=114  Identities=11%  Similarity=0.288  Sum_probs=99.0

Q ss_pred             ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC-cEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND-SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|+++ +++|++|.+|+++....+       .+.++.+    
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~----  107 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKS----  107 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHH----
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHH----
Confidence            56777986  789999999999999999999999999999874 999999999998754432       1356666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  477 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl  477 (483)
                               +|. +++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||+
T Consensus       108 ---------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 ---------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             ---------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence                     553 478999999999999999999999999999 579999999999986

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.64  E-value=1.7e-15  Score=143.84  Aligned_cols=197  Identities=11%  Similarity=0.085  Sum_probs=126.7

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCC---CCCc-------
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS---SSLP-------  325 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~---~~~~-------  325 (483)
                      +|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++........   ....       
T Consensus        12 im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~   85 (245)
T 3l2b_A           12 LEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDT   85 (245)
T ss_dssp             SCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHH
T ss_pred             hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHH
Confidence            57788999999999999999999999999999964   45   89999999999998754321100   0000       


Q ss_pred             ----------cccccccccccccc-ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC------------
Q 011558          326 ----------ILQQPVSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND------------  382 (483)
Q Consensus       326 ----------~~~~~v~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g------------  382 (483)
                                ......+.+.++.. ...+.+.+....+.+-.+  ..+++..+.+.+++++++++...            
T Consensus        86 l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~  163 (245)
T 3l2b_A           86 LSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKN  163 (245)
T ss_dssp             TTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHH
T ss_pred             hCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHc
Confidence                      00000011111111 112233344444444444  48889999999999998886321            


Q ss_pred             cEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEEEEe
Q 011558          383 SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVE  461 (483)
Q Consensus       383 ~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd  461 (483)
                      .+-.+.+..|.......-      ....++.+             +|. +++.++.+++++.+|+++|.+++++++||||
T Consensus       164 ~~~~i~t~~d~~~~~~~~------~~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd  224 (245)
T 3l2b_A          164 NITVITTPHDSFTASRLI------VQSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVID  224 (245)
T ss_dssp             TCEEEECSSCHHHHHHHG------GGGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEEC
T ss_pred             CCeEEEeCCChHHHHHHH------hcCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEc
Confidence            122233333322211100      00234444             777 7899999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHH
Q 011558          462 AGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       462 ~~~~~l~GiIs~~DIl~~l  480 (483)
                       ++|+++|+||++|++++.
T Consensus       225 -~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          225 -ENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             -TTCBEEEEEECC------
T ss_pred             -CCCeEEEEEEHHHhhchh
Confidence             579999999999999864

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=7.8e-16  Score=143.00  Aligned_cols=120  Identities=14%  Similarity=0.200  Sum_probs=103.9

Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHh
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  417 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~  417 (483)
                      +|...++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...          +.++.+   
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~---   76 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN---   76 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG---
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH---
Confidence            4556777889999999999999999999999999999999998899999999999875322          133444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                +|.++++++.+++++.+|+++|.+++++++||+| ++|+++|+||.+||++.+.
T Consensus        77 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           77 ----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             ----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence                      6777889999999999999999999999999999 4799999999999999874

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.63  E-value=1.1e-15  Score=138.26  Aligned_cols=138  Identities=14%  Similarity=0.181  Sum_probs=101.9

Q ss_pred             ccccccCCC----eeEe--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhcccccccccCCccHH
Q 011558          342 RIGEANGRP----FAML--RPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  413 (483)
Q Consensus       342 ~v~~~m~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~  413 (483)
                      +++++|.+.    ++++  .+++++.+|+++|.+++++++||+  |++|+++|+|+..|+++...........+......
T Consensus        12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            456668776    7788  999999999999999999999999  78899999999999998654321000000000000


Q ss_pred             HHH------hcCCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          414 QAL------QLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       414 ~~l------~~~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                      .+.      ........+. ++|.++++++.+++++.+|+++|.+++++++||+|  +|+++|+||++||++++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            000      0000001111 27777899999999999999999999999999999  599999999999999875

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=1.5e-15  Score=141.09  Aligned_cols=154  Identities=14%  Similarity=0.157  Sum_probs=98.9

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      .+.++++++.+++++.+|+++|.+++++.+||+++   ++   +++|++|.+|+++.+.             ..      
T Consensus        18 ~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~~-------------~~------   72 (213)
T 1vr9_A           18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLDL-------------DS------   72 (213)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSCT-------------TS------
T ss_pred             hhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhcC-------------CC------
Confidence            56788999999999999999999999999999954   35   8999999999876431             12      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  415 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~  415 (483)
                            .++++|.+++.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++......         ...+.
T Consensus        73 ------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~~~  137 (213)
T 1vr9_A           73 ------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMDVP  137 (213)
T ss_dssp             ------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C----
T ss_pred             ------cHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCCCC
Confidence                  345569889999999999999999999999999999998899999999999998654221         11110


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEe
Q 011558          416 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  461 (483)
Q Consensus       416 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd  461 (483)
                      ...         +   .+.+.....++.+|.+.|.+++++.++|++
T Consensus       138 ~~~---------l---~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          138 GIR---------F---SVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             ----------------------------------------------
T ss_pred             cEE---------E---EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            000         0   011123344599999999999999999886

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.62  E-value=5.1e-15  Score=140.32  Aligned_cols=139  Identities=17%  Similarity=0.310  Sum_probs=105.0

Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHhccc--ccc------------
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKDKA--YAQ------------  404 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~di~~l~~~~~--~~~------------  404 (483)
                      ..|+++|.++++++.+++++.+|.++|.+++++++||||++  ++++|+|+++||++++....  ...            
T Consensus        13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   92 (250)
T 2d4z_A           13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEG   92 (250)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC-
T ss_pred             CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccccc
Confidence            36788899999999999999999999999999999999963  68999999999998654221  000            


Q ss_pred             ----------------cccCC---------------------------------------------------------cc
Q 011558          405 ----------------IHLDE---------------------------------------------------------MN  411 (483)
Q Consensus       405 ----------------~~l~~---------------------------------------------------------~~  411 (483)
                                      ..+.+                                                         ++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  172 (250)
T 2d4z_A           93 RNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLT  172 (250)
T ss_dssp             --------------------------------------------------------------------------CCSCCB
T ss_pred             cccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccC
Confidence                            00000                                                         00


Q ss_pred             HHHHHh--cCCCCCCCc---c-cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          412 IHQALQ--LGQDANPSL---G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       412 v~~~l~--~~~~~~~~~---~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ..+...  .. .-..++   . +|...++++.++++|.+|..+|...|++++||++  .|+|+||||+.||++++.+
T Consensus       173 ~~~~~~~~~~-~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          173 LEEIYRWEQR-EKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHH-HTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhHHHH-hcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            000000  00 001122   1 5788899999999999999999999999999998  5999999999999999864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.62  E-value=7.5e-16  Score=135.89  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=97.8

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      +..+++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++.......   ......       
T Consensus        23 P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~-------   86 (156)
T 3k6e_A           23 PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADT-------   86 (156)
T ss_dssp             ETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTS-------
T ss_pred             chhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhccccc---cccccc-------
Confidence            3567899999999999999999999999999954   45   8999999999999876532110   011112       


Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                           +++++|.+++.++.+++++.+|+++|.+++  .+||+|++|+++|+||++||++.+.
T Consensus        87 -----~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           87 -----DIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             -----BGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----CHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHH
Confidence                 455669999999999999999999998766  4999999999999999999998664

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.60  E-value=4.8e-15  Score=129.19  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.+  +++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++.+....          ..    
T Consensus        28 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~----   88 (148)
T 3lv9_A           28 IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KI----   88 (148)
T ss_dssp             TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CC----
T ss_pred             ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------Cc----
Confidence            4555  8899999999999999999999999999953  225   8999999999998875431          12    


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                              .++++| +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        89 --------~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           89 --------ELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             --------CGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             --------cHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                    344558 78899999999999999999999999999999999999999999998654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.59  E-value=8.9e-15  Score=134.96  Aligned_cols=122  Identities=15%  Similarity=0.125  Sum_probs=104.8

Q ss_pred             ccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhC---CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCC
Q 011558          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  324 (483)
Q Consensus       248 ~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~---~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~  324 (483)
                      +..+.+|.+|.++++++.+++|+.+|++.|.++   +++.+||+++   ++   +++|++|.+|++...           
T Consensus        51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~~-----------  113 (205)
T 3kxr_A           51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKHE-----------  113 (205)
T ss_dssp             SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTSC-----------
T ss_pred             CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhCC-----------
Confidence            556677788999999999999999999999987   8899999954   45   899999999986420           


Q ss_pred             cccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558          325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (483)
Q Consensus       325 ~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~  400 (483)
                        ...            .++++|.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+.+.
T Consensus       114 --~~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          114 --PHE------------PLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             --TTS------------BGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             --Ccc------------hHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence              112            34555988999999999999999999999999999999999999999999999977643

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.59  E-value=1.1e-14  Score=130.40  Aligned_cols=117  Identities=10%  Similarity=0.070  Sum_probs=99.8

Q ss_pred             CCCC--CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccc
Q 011558          255 RPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  332 (483)
Q Consensus       255 ~~~~--~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~  332 (483)
                      .+|.  .+++++.+++++.+|++.|.+++++++||+++  ..+   +++|++|.+|+++.+....          ..   
T Consensus        46 diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~---  107 (172)
T 3lhh_A           46 SLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------RL---  107 (172)
T ss_dssp             TTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------CC---
T ss_pred             HhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------cc---
Confidence            3566  67889999999999999999999999999954  225   8999999999998774320          12   


Q ss_pred             cccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          333 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       333 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                               .++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+..
T Consensus       108 ---------~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          108 ---------ELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------CGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------cHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence                     345558 888999999999999999999999999999999999999999999986653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.58  E-value=9.2e-15  Score=122.70  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=99.1

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++.+.+||+++   +|   +++|++|.+|+++++....           .      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~-----------~------   62 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNK-----------K------   62 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTC-----------C------
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhcc-----------c------
Confidence            35678889999999999999999999999999964   45   8999999999998775311           1      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            .++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        63 ------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           63 ------TIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             ------BGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             ------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence                  244558888999999999999999999999999999998899999999999998664

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.57  E-value=1.2e-14  Score=123.71  Aligned_cols=116  Identities=12%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             CCC--CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~--~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.  .+++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++.+....         ...    
T Consensus        11 iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~---------~~~----   72 (130)
T 3i8n_A           11 VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGS---------GQK----   72 (130)
T ss_dssp             TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTT---------TTS----
T ss_pred             CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCC---------CcC----
Confidence            455  56779999999999999999999999999953  225   8999999999998875321         012    


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                              .++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus        73 --------~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           73 --------QLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             --------BHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --------CHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence                    234457 45789999999999999999999999999999999999999999998553

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.57  E-value=5.4e-15  Score=143.63  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=103.7

Q ss_pred             cccccccCCCeeEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHH
Q 011558          341 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  415 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~  415 (483)
                      .+++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|+||.+|++...          .+.++.+ 
T Consensus       137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~-  205 (286)
T 2oux_A          137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD-  205 (286)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH-
T ss_pred             HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHH-
Confidence            366777999999999999999999999987     888999999999999999999987531          1356676 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          416 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       416 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                  +|.+++++|.+++++.+|+++|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       206 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          206 ------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        6666789999999999999999999999999999 5799999999999999874

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.56  E-value=1.2e-14  Score=140.76  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=101.2

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  416 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l  416 (483)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+  
T Consensus       136 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~--  203 (278)
T 2yvy_A          136 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--  203 (278)
T ss_dssp             BGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT--
T ss_pred             hHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH--
Confidence            46677999999999999999999999986     789999999899999999999997521          0233343  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                 +|.+++++|.+++++.+|+++|.+++.+++|||| ++|+++|+||..||++.+.+
T Consensus       204 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          204 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             -----------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC--
T ss_pred             -----------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHHH
Confidence                       7777899999999999999999999999999999 57999999999999998753

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.56  E-value=1.6e-14  Score=123.05  Aligned_cols=115  Identities=9%  Similarity=0.128  Sum_probs=95.5

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      .+++++.+++++.+|++.|.+++++++||+++  +++   +++|++|.+|+++++....       .....         
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~-------~~~~~---------   70 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKK-------EFTKE---------   70 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSS-------CCCHH---------
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccC-------ccchh---------
Confidence            46889999999999999999999999999942  234   8999999999998774311       00012         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                         .+.++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus        71 ---~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           71 ---IMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             ---HHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ---hHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence               234457 56789999999999999999999999999999999999999999998654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.56  E-value=7.3e-15  Score=124.71  Aligned_cols=116  Identities=18%  Similarity=0.203  Sum_probs=99.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.+++.++.+++++.+|++.|.+++++.+||+++    |   +++|++|.+|+++.+.....        ..       
T Consensus        10 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~~~--------~~-------   67 (128)
T 3gby_A           10 LAETDYPVFTLGGSTADAARRLAASGCACAPVLDG----E---RYLGMVHLSRLLEGRKGWPT--------VK-------   67 (128)
T ss_dssp             GCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHTTCSSSCC--------TT-------
T ss_pred             hhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHhhCCc--------cc-------
Confidence            57788999999999999999999999999999953    4   89999999999875432100        01       


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                           ..++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        68 -----~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           68 -----EKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             -----CBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -----CcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                 1345568889999999999999999999999999999999999999999999998664

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.55  E-value=1.1e-14  Score=123.39  Aligned_cols=111  Identities=12%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++++||+++  ..|   +++|++|.+|+++.+....         ...          
T Consensus        14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~~----------   69 (127)
T 3nqr_A           14 QMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EAF----------   69 (127)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CCC----------
T ss_pred             HeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CCC----------
Confidence            4889999999999999999999999999953  225   8999999999988763211         112          


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                        .++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|+.|+++.+
T Consensus        70 --~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           70 --SMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             --CHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             --CHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence              34445755 67899999999999999999999999999999999999999999854

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.55  E-value=1.2e-14  Score=124.89  Aligned_cols=114  Identities=10%  Similarity=0.111  Sum_probs=94.7

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      .+++++.+++++.+|++.|.+++++++||+++  ..+   +++|++|.+|+++++....        ....         
T Consensus        13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~~---------   70 (136)
T 3lfr_A           13 SQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDSD---------   70 (136)
T ss_dssp             GGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGGC---------
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCCc---------
Confidence            56789999999999999999999999999954  225   8999999999998764210        0112         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                         .+.++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        71 ---~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           71 ---DVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             ---CGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             ---CHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence               34455865 789999999999999999999999999999999999999999997544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.55  E-value=2.9e-14  Score=121.27  Aligned_cols=111  Identities=10%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|.+|+++++..           ...+        
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~~~--------   70 (129)
T 3jtf_A           15 SRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PALD--------   70 (129)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TTSC--------
T ss_pred             HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CCcC--------
Confidence            56789999999999999999999999999953  225   89999999999886531           0122        


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                          ++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|+.|+++.+.
T Consensus        71 ----v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           71 ----IRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             ----GGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             ----HHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                3444754 779999999999999999999999999998899999999999998654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.55  E-value=2.5e-14  Score=122.05  Aligned_cols=116  Identities=22%  Similarity=0.319  Sum_probs=99.4

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++.+||++    +|   +++|++|.+|+++++.....        ...      
T Consensus         9 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~------   67 (133)
T 2ef7_A            9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LET------   67 (133)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTC------
T ss_pred             hccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------ccc------
Confidence            5667889999999999999999999999999995    35   89999999999987753211        112      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            .+.++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        68 ------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           68 ------KAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             ------BGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ------CHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                  345558788899999999999999999999999999998999999999999998665

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.54  E-value=3.5e-14  Score=119.55  Aligned_cols=116  Identities=17%  Similarity=0.237  Sum_probs=97.9

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      |.++++++.+++++.+|++.|.+++.+.+||++    +|   +++|++|.+|+++++.....       ....       
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~~-------   65 (125)
T 1pbj_A            7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEV-------   65 (125)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTS-------
T ss_pred             cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------cccc-------
Confidence            566889999999999999999999999999995    35   89999999999987654211       0122       


Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                           .++++|.+++.++.+++++.+|++.|.+++.+.+||+|+ |+++|++|.+|+++.+..
T Consensus        66 -----~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           66 -----KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             -----BHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             -----CHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                 344558888999999999999999999999999999997 999999999999986653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.54  E-value=2e-14  Score=126.10  Aligned_cols=112  Identities=12%  Similarity=0.143  Sum_probs=96.8

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEE-ecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVv-d~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      +++++.+++++.+|++.|.+++++++||+ ++  ..|   +++|++|.+|+++.+....          ..         
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~~---------   86 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------KA---------   86 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------TS---------
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------CC---------
Confidence            78899999999999999999999999999 42  124   8999999999998875421          12         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                         .++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..||++.+..
T Consensus        87 ---~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           87 ---KISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ---BGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             ---cHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence               345558 789999999999999999999999999999999999999999999986654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.53  E-value=4.2e-14  Score=122.05  Aligned_cols=117  Identities=18%  Similarity=0.271  Sum_probs=98.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++++||+++   ++ ..+++|++|.+|+++++.....        ...      
T Consensus        10 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~-~~~~~Givt~~dl~~~~~~~~~--------~~~------   71 (141)
T 2rih_A           10 LLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DN-PKRPVAVVSERDILRAVAQRLD--------LDG------   71 (141)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TE-EEEEEEEEEHHHHHHHHHTTCC--------TTS------
T ss_pred             HhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC-cceeEEEEEHHHHHHHHhcCCC--------CCC------
Confidence            56778999999999999999999999999999964   10 0169999999999987753210        122      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                            .+.++|.+++.++.++ ++.+|+++|.+++.+.+||+|++|+++|++|.+||++..
T Consensus        72 ------~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           72 ------PAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             ------BSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             ------CHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence                  3455588899999999 999999999999999999999899999999999998743

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.53  E-value=3.3e-14  Score=125.70  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=100.9

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+||.+|+++++...+.....          . .
T Consensus        10 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~----------~-~   72 (160)
T 2o16_A           10 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ----------G-D   72 (160)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhccccc----------c-c
Confidence            56678899999999999999999999999999954   45   899999999999987643221000          0 0


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      -......+.++|.+++.++.+++++.+|+++|.+++++.+||+|+ |+++|+||..||++.+.
T Consensus        73 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           73 SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ---CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             chhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            001122456669999999999999999999999999999999997 99999999999998655

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=5.9e-14  Score=124.65  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=98.6

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      .+++++.+++++.+|++.|.+++++.+||+++   +|   +++|+||.+||++.+......      ....         
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~~~---------   93 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SLQQ---------   93 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GGTS---------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------cccC---------
Confidence            36789999999999999999999999999964   45   899999999999987653211      1122         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                         .+.++|.+++.++.+++++.+|+++|.+++++.+||+|+ |+++|+||..||++.+..
T Consensus        94 ---~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           94 ---SVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---BGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             ---CHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence               345558889999999999999999999999999999998 999999999999987653

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.53  E-value=3e-14  Score=122.30  Aligned_cols=117  Identities=21%  Similarity=0.390  Sum_probs=98.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhH-HHHHHhhccCCCCCCcccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dI-l~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      +|.++++++.+++++.+|++.|.+++.+.+||+++   +|   +++|++|..|+ ++++....        ....     
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~~-----   73 (138)
T 2p9m_A           13 VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLET-----   73 (138)
T ss_dssp             TSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSSC-----
T ss_pred             hhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCCc-----
Confidence            46678889999999999999999999999999954   35   89999999999 87653210        1122     


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                             .+.++|.+++.++.+++++.+|++.|.+++     .+.+||+|++|+++|++|..|+++.+.
T Consensus        74 -------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           74 -------TIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             -------BHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------CHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                   345558888999999999999999999999     999999998999999999999998654

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.52  E-value=1.2e-14  Score=158.14  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=69.5

Q ss_pred             cCCcceEEEEEecC--CCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeee--eCCCCC---
Q 011558           16 VGSILVPVRFIWPN--GGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR--HDENQP---   87 (483)
Q Consensus        16 ~~~~~~~~~f~~~~--~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~--~d~~~~---   87 (483)
                      ..+..++|+|+++.  +|++|+|+||||||++. .+|.+.   +|.|++++.||||.|||||+|||+|.  +||++|   
T Consensus        13 ~~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~   89 (696)
T 4aee_A           13 GRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKK   89 (696)
T ss_dssp             TEEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEE
T ss_pred             CCCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCccc
Confidence            34466777777765  69999999999999764 577775   79999999999999999999999999  778777   


Q ss_pred             eeeCCCCCeeeEE
Q 011558           88 HVSGNYGVVNCVY  100 (483)
Q Consensus        88 ~~~~~~g~~nn~~  100 (483)
                      ++.|++|..|++.
T Consensus        90 y~~~~~g~~n~~~  102 (696)
T 4aee_A           90 CVHTSFFPEYKKC  102 (696)
T ss_dssp             EEECSSCTTSEEE
T ss_pred             ccccCCcccccee
Confidence            4669999999985

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.52  E-value=8.1e-14  Score=119.61  Aligned_cols=119  Identities=15%  Similarity=0.293  Sum_probs=98.9

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++.+||+++   +|   +++|++|..|+++.+.....       ....      
T Consensus        12 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~------   72 (138)
T 2yzi_A           12 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYDI------   72 (138)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTTS------
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcCC-------cccC------
Confidence            56778999999999999999999999999999953   45   89999999999854321100       0112      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~  400 (483)
                            .+.++|.+++.++.+++++.+|+++|.+++++.+ |+|++|+++|++|..||++.+...
T Consensus        73 ------~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           73 ------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             ------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCC
T ss_pred             ------CHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHH
Confidence                  3455688899999999999999999999999999 999889999999999999876643

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.52  E-value=1.7e-13  Score=129.81  Aligned_cols=212  Identities=12%  Similarity=0.153  Sum_probs=131.1

Q ss_pred             ccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccH
Q 011558          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (483)
Q Consensus       155 ~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i  234 (483)
                      .++.|+|  +.++++++.+.++.+|++.|.++++.++||+|.+ ++++|++|..|++..+......    ........+.
T Consensus         7 ~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~----~~~~~~~~~~   79 (245)
T 3l2b_A            7 LKVEDLE--MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDS----NILAKSATSL   79 (245)
T ss_dssp             CBGGGSC--CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCT----THHHHTTCCH
T ss_pred             CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhh----hhhhhccCCH
Confidence            5678888  4578999999999999999999999999999965 5799999999999776532110    0111112222


Q ss_pred             HHHHHHHhhh--hcc-c--c------------CCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCC--
Q 011558          235 SAWKVGKLQL--NLK-R--Q------------MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG--  295 (483)
Q Consensus       235 ~~~~~~~~~~--~~~-~--~------------~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g--  295 (483)
                      ..+.+.....  ... .  .            ...........++.+..   -.++...+.+.+++.++++.......  
T Consensus        80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~v  156 (245)
T 3l2b_A           80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKEI  156 (245)
T ss_dssp             HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred             HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence            3222211100  000 0  0            00000112234444422   37888888999999888873211000  


Q ss_pred             ----CcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccC-CCeeEecCCCCHHHHHHHHHhC
Q 011558          296 ----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQA  370 (483)
Q Consensus       296 ----~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~  370 (483)
                          ....+-.+.|..|.......                     ......++++|. +++.++.+++++.+|+++|.++
T Consensus       157 ~~~a~~~~~~~i~t~~d~~~~~~~---------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~  215 (245)
T 3l2b_A          157 IELAKKNNITVITTPHDSFTASRL---------------------IVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET  215 (245)
T ss_dssp             HHHHHHHTCEEEECSSCHHHHHHH---------------------GGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEeCCChHHHHHH---------------------HhcCCceeeEecCCccEEECCCCcHHHHHHHHHhc
Confidence                00012334444443322111                     011124667798 8999999999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          371 DVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       371 ~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                      +++++||+|++|+++|++|++|+++..
T Consensus       216 ~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          216 RYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             CCSEEEEECTTCBEEEEEECC------
T ss_pred             CCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            999999999999999999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.52  E-value=4.2e-14  Score=124.79  Aligned_cols=117  Identities=13%  Similarity=0.204  Sum_probs=97.6

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++ +++.+++++.+|++.|.+++++.+||+++   +|   +++|+||.+||++.+....       .....      
T Consensus        22 im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~------   81 (159)
T 3fv6_A           22 FQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQ-------ELTSV------   81 (159)
T ss_dssp             SCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCS-------CTTTC------
T ss_pred             HcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccC-------cccCc------
Confidence            45554 59999999999999999999999999964   45   8999999999998764221       01122      


Q ss_pred             ccccccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---cEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---~lvGiit~~di~~l~~  398 (483)
                            .+.++|.+  ++.++.+++++.+|+++|.+++++.+||+|++|   +++|+||..||++.+.
T Consensus        82 ------~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           82 ------PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             ------BGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred             ------CHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence                  34555877  889999999999999999999999999999888   9999999999998665

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.52  E-value=7.2e-14  Score=121.81  Aligned_cols=119  Identities=15%  Similarity=0.188  Sum_probs=97.3

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      .+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+||++++......          ...    ..
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~----------~~~----~~   84 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERI----------EFE----RL   84 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSB----------CGG----GG
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhccc----------chh----HH
Confidence            45889999999999999999999999999964   45   899999999999887432110          000    00


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                      ....++++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|+||..||++.+..
T Consensus        85 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           85 EEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence            1224566798899999999999999999999886  9999999999999999999997653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.51  E-value=1.5e-14  Score=126.15  Aligned_cols=131  Identities=18%  Similarity=0.247  Sum_probs=99.1

Q ss_pred             CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+++   +|   +++|++|.+|+++++......     ..+. ....
T Consensus        10 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~-~~~~   77 (152)
T 4gqw_A           10 FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTW-----KTFN-AVQK   77 (152)
T ss_dssp             TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CC-----HHHH-HHHT
T ss_pred             ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcc-----cchH-HHHH
Confidence            4555  7899999999999999999999999999954   45   899999999998754321100     0000 0000


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      .........+.++|.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.+.
T Consensus        78 ~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           78 LLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             C-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            00011123456678888899999999999999999999999999999999999999999999665

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.51  E-value=1e-13  Score=122.01  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=93.1

Q ss_pred             CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.+  +++++.+++++.+|++.|.+++++++||+++  ..+   +++|++|.+|+++++...          ...    
T Consensus        43 iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~~----  103 (156)
T 3oi8_A           43 AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQF----  103 (156)
T ss_dssp             TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GGC----
T ss_pred             eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Ccc----
Confidence            4554  6889999999999999999999999999953  234   799999999998765321          112    


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  394 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~  394 (483)
                              .++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..||+
T Consensus       104 --------~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 --------HLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             --------CHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             --------cHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                    34455765 78999999999999999999999999999999999999999985

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.51  E-value=1.7e-13  Score=120.53  Aligned_cols=132  Identities=14%  Similarity=0.181  Sum_probs=101.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCce-eEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~-ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      +|.++++++.+++++.+|++.|.+++++. +||+|+    +   +++|++|..|+++++...+.........+.....  
T Consensus        21 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~--   91 (157)
T 1o50_A           21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK--   91 (157)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCC--
T ss_pred             cccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH--
Confidence            57888999999999999999999999999 999964    2   6999999999998764211000000000000000  


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                        ......+.++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|+||..||++.+.+
T Consensus        92 --~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           92 --RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             --CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             --HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence              0112346677988 9999999999999999999999999999988999999999999986653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.50  E-value=1.9e-13  Score=116.84  Aligned_cols=114  Identities=18%  Similarity=0.297  Sum_probs=96.1

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++.+++++.+|++.|.+++++.+||++    +|   +++|++|.+|+++.+.....      ....          
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~----------   73 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKD----------   73 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGG----------
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------Cccc----------
Confidence            5788999999999999999999999999995    35   89999999999875432110      0111          


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                        ..+.++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|..|+++.+.
T Consensus        74 --~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           74 --TQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             --SBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             --CCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence              245566888999999999999999999999999999999 799999999999998665

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.50  E-value=7.9e-14  Score=120.38  Aligned_cols=119  Identities=22%  Similarity=0.231  Sum_probs=96.2

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      .|.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..|+++++.....      .....+     
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~-----   78 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLS-----   78 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSB-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCcc-----
Confidence            45678899999999999999999999999999954   35   89999999999987753210      011223     


Q ss_pred             ccccccccccccCC------CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGR------PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                             +.++|.+      ++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+||++.+.
T Consensus        79 -------v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           79 -------VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -------HHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------HHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                   3344643      6889999999999999999999999999998899999999999998654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.50  E-value=1.3e-13  Score=123.57  Aligned_cols=118  Identities=7%  Similarity=0.059  Sum_probs=97.6

Q ss_pred             CCCCC--CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccc
Q 011558          254 GRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  331 (483)
Q Consensus       254 g~~~~--~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v  331 (483)
                      +.+|.  .+++++.+++++.+|++.|.+++++++||+++  ..+   +++|+||.+||++++....          ..+ 
T Consensus        39 ~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~~~-  102 (173)
T 3ocm_A           39 RSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------RVR-  102 (173)
T ss_dssp             TTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------SCC-
T ss_pred             HHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------cch-
Confidence            34564  46889999999999999999999999999953  225   8999999999998875321          111 


Q ss_pred             ccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558          332 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (483)
Q Consensus       332 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~  400 (483)
                                 +.  |.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..||+..+...
T Consensus       103 -----------v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          103 -----------RN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             -----------GG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred             -----------hH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence                       22  235678999999999999999999999999999999999999999999976643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.50  E-value=5.3e-14  Score=122.68  Aligned_cols=114  Identities=16%  Similarity=0.227  Sum_probs=96.3

Q ss_pred             CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+++   +|   +++|+||..|+++.+....       .....    
T Consensus        33 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~----   95 (149)
T 3k2v_A           33 IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGV-------DMRDA----   95 (149)
T ss_dssp             TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSS-------CCTTC----
T ss_pred             HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCC-------CcccC----
Confidence            4666  8899999999999999999999999999964   45   8999999999998774321       11122    


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~  395 (483)
                              .++++|.+++.++.+++++.+|+++|.+++++.+||+|++ +++|+||..||++
T Consensus        96 --------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           96 --------SIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             --------BHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             --------cHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                    3445588889999999999999999999999999999965 9999999999864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.50  E-value=6.4e-14  Score=147.56  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=104.1

Q ss_pred             cccccccCCCeeEecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558          341 PRIGEANGRPFAMLRPT-ASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  418 (483)
Q Consensus       341 ~~v~~~m~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~  418 (483)
                      .+|+++|.++++++.++ +++.+|+++|.+++++++||+| ++++++|+||.+||++.+..+...    .+.++.+    
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~----~~~~V~~----  455 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ----QSDPAIK----  455 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC----TTSBGGG----
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc----CCCcHHH----
Confidence            46888899999999999 9999999999999999999999 789999999999999865432111    1245555    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCC---CCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG---SKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~---~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|.++++++.+++++.+++++|.++++  +||||++   .|+++||||+.||++++..
T Consensus       456 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          456 ---------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ---------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence                     777789999999999999999987775  7999931   3899999999999999864

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.50  E-value=1e-13  Score=125.41  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=100.3

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|.+||++++......                
T Consensus        14 im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~~----------------   71 (184)
T 1pvm_A           14 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK----------------   71 (184)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC----------------
T ss_pred             hcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhcccC----------------
Confidence            56778999999999999999999999999999954   35   899999999999876432000                


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                        .....++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||..||++.+.
T Consensus        72 --~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 --PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             --GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             --cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence              0112455668889999999999999999999999999999998899999999999987554

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.49  E-value=1.8e-13  Score=120.13  Aligned_cols=122  Identities=16%  Similarity=0.226  Sum_probs=98.5

Q ss_pred             CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      +|.+  +++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..|+++++......        .  .. 
T Consensus        16 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~--------~--~~-   78 (157)
T 2emq_A           16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLERI--------E--FE-   78 (157)
T ss_dssp             TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSSB--------C--GG-
T ss_pred             hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhccccc--------c--hH-
Confidence            4554  7889999999999999999999999999954   45   899999999999876421100        0  00 


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                         ......+.++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|+||.+||++.+..
T Consensus        79 ---~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           79 ---RLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---GGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             ---HhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence               001224566798999999999999999999999987  9999988999999999999986653

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.48  E-value=4.9e-14  Score=120.17  Aligned_cols=115  Identities=16%  Similarity=0.259  Sum_probs=95.6

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH-HHHhhccCCCCCCccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~-~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      |.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++ ++.....       ....      
T Consensus        14 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~~------   74 (133)
T 1y5h_A           14 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD-------PNTA------   74 (133)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC-------TTTS------
T ss_pred             hcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC-------cccc------
Confidence            4567888999999999999999999999999954   35   8999999999984 4432110       0112      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                            .++++|.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|++|..||++.+
T Consensus        75 ------~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           75 ------TAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             ------BHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             ------CHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence                  345558889999999999999999999999999999997 9999999999998754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.47  E-value=1e-13  Score=124.56  Aligned_cols=133  Identities=19%  Similarity=0.280  Sum_probs=97.4

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCC--CCCCccccccc------
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS--SSSLPILQQPV------  331 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~--~~~~~~~~~~v------  331 (483)
                      +++++.+++++.+|+++|.+++++.+||+++   +|   +++|+||.+||++++.......  ....+......      
T Consensus        15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (180)
T 3sl7_A           15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNEL   88 (180)
T ss_dssp             GCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CCCSHHHH
T ss_pred             CceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHH
Confidence            6889999999999999999999999999964   45   8999999999986432111000  00000000000      


Q ss_pred             ccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          332 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       332 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      ..+........++++|.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..||++.+.
T Consensus        89 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           89 QKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             HHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             HHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            0000011223567779988999999999999999999999999999999999999999999998665

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.46  E-value=2.6e-13  Score=119.22  Aligned_cols=116  Identities=13%  Similarity=0.240  Sum_probs=98.1

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++.+++++.+|++.|.+++++.+||.+    +|   +++|++|..|+++++......      ....         
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~~~~---------   78 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------SKAT---------   78 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------SSSC---------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------cccc---------
Confidence            5688999999999999999999999999963    35   899999999999887543211      1122         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~  400 (483)
                         .++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|.+||++.+...
T Consensus        79 ---~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           79 ---RVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             ---BHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             ---CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence               34555888999999999999999999999999999999 79999999999999977643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.46  E-value=2.6e-13  Score=119.92  Aligned_cols=122  Identities=13%  Similarity=0.144  Sum_probs=95.8

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      |.++++++.+++++.+|++.|.+++++++||+|+ .++|   +++|++|..|+++++.......   ......       
T Consensus        19 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~-------   84 (164)
T 2pfi_A           19 MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQ-------   84 (164)
T ss_dssp             CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCCC-------
T ss_pred             cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccc-------
Confidence            5667889999999999999999999999999952 1245   8999999999998775321110   001112       


Q ss_pred             cccccccccccCCC------eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          337 GTWVPRIGEANGRP------FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       337 ~~~~~~v~~~m~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                           .+.++|.++      +.++.+++++.+|+++|.+++.+++||+| +|+++|++|++||++.+.
T Consensus        85 -----~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           85 -----CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             -----BHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             -----hhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                 233445544      78899999999999999999999999999 799999999999998665

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.45  E-value=2e-13  Score=141.50  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=102.0

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  416 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l  416 (483)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++++++|+++.+|++...          .+.++.+  
T Consensus       156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~d--  223 (473)
T 2zy9_A          156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--  223 (473)
T ss_dssp             BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGG--
T ss_pred             CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHH--
Confidence            56677999999999999999999999985     578999999889999999999997521          1245555  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                 +|.++++++++++++.+|+++|.+++.+++|||| ++|+++|+||..||++.+.
T Consensus       224 -----------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             -----------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence                       7777899999999999999999999999999999 5899999999999998874

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.44  E-value=1.7e-13  Score=120.85  Aligned_cols=118  Identities=9%  Similarity=0.124  Sum_probs=95.7

Q ss_pred             CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (483)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (483)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..||++++......          ...    ...
T Consensus        25 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~----------~~~----~~~   84 (159)
T 1yav_A           25 KVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI----------EFE----KLD   84 (159)
T ss_dssp             GSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB----------CGG----GTT
T ss_pred             ceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc----------chh----hhc
Confidence            6888999999999999999999999999964   45   899999999999876431100          000    001


Q ss_pred             ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                      ...+.++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|+||++||++.+..
T Consensus        85 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           85 QITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             TSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence            124566688899999999999999999998876  9999989999999999999986653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.44  E-value=6.8e-13  Score=128.28  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=101.5

Q ss_pred             ccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC
Q 011558          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  322 (483)
Q Consensus       248 ~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~  322 (483)
                      +....+|.+|.++++++.+++++.+|++.|.++     +++++||++.   ++   +++|++|.+|++...         
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~~---------  196 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD---------  196 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHSC---------
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcCC---------
Confidence            344555668888999999999999999999987     7899999954   35   899999999987530         


Q ss_pred             CCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          323 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       323 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                          ...            .++++|.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||..|++..+.+
T Consensus       197 ----~~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 ----PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ----TTC------------BSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             ----CCC------------cHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                012            3455588889999999999999999999999999999999999999999999986653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.44  E-value=7e-13  Score=125.58  Aligned_cols=139  Identities=11%  Similarity=0.082  Sum_probs=101.7

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC------------
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS------------  322 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~------------  322 (483)
                      .+|.++++++.+++++.+|+++|.+++++.+||+++ .+++   +++|+||.+||++++.........            
T Consensus        17 diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   92 (250)
T 2d4z_A           17 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEG   92 (250)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC-
T ss_pred             HhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccccc
Confidence            468899999999999999999999999999999953 2234   799999999999887543210000            


Q ss_pred             ---------------CCcccccc--------------------------------------------------ccc--cc
Q 011558          323 ---------------SLPILQQP--------------------------------------------------VSS--IQ  335 (483)
Q Consensus       323 ---------------~~~~~~~~--------------------------------------------------v~~--l~  335 (483)
                                     ...++...                                                  ..+  +.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  172 (250)
T 2d4z_A           93 RNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLT  172 (250)
T ss_dssp             --------------------------------------------------------------------------CCSCCB
T ss_pred             cccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccC
Confidence                           00000000                                                  000  00


Q ss_pred             ---ccc-----ccccc--c-cccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 ---LGT-----WVPRI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 ---i~~-----~~~~v--~-~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                         +..     ....|  . .+|.+.++++.+++++.+|..+|...+++++||++ .|+++|+||+.||++++.
T Consensus       173 ~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          173 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence               000     01122  2 35888999999999999999999999999999997 799999999999999776

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.43  E-value=4.5e-14  Score=151.67  Aligned_cols=139  Identities=16%  Similarity=0.074  Sum_probs=102.8

Q ss_pred             cccccccC--CCeeEecCCCCHHHHHHHHH-hCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-cccc---------c
Q 011558          341 PRIGEANG--RPFAMLRPTASLGSALALLV-QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH---------L  407 (483)
Q Consensus       341 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~~---------l  407 (483)
                      .+++|+|.  +++.++++++++.++.+.|. +++++.+||+|++++++|+++++|+++....... ....         .
T Consensus       453 ~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~  532 (632)
T 3org_A          453 MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL  532 (632)
T ss_dssp             SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------------
T ss_pred             CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence            46788899  88999999999999999999 7999999999999999999999999985543210 0000         0


Q ss_pred             CCcc----HHHHHhcC---------------CCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeE
Q 011558          408 DEMN----IHQALQLG---------------QDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  467 (483)
Q Consensus       408 ~~~~----v~~~l~~~---------------~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l  467 (483)
                      ....    +.......               ..+..+. ++|+++++++++++++.+|+++|.+++++++||+|  +|++
T Consensus       533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~l  610 (632)
T 3org_A          533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKL  610 (632)
T ss_dssp             --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEE
T ss_pred             CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEE
Confidence            0000    00100000               0001112 38999999999999999999999999999999996  5999


Q ss_pred             EEEEehHHHHHHHh
Q 011558          468 EGIISLSDVFRFLL  481 (483)
Q Consensus       468 ~GiIs~~DIl~~l~  481 (483)
                      +||||++||++.+.
T Consensus       611 vGIVT~~Dll~~~~  624 (632)
T 3org_A          611 VGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEEEGGGTEECCC
T ss_pred             EEEEehhhHHHHHh
Confidence            99999999987653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.42  E-value=6.9e-13  Score=128.71  Aligned_cols=121  Identities=14%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             ccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC
Q 011558          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  322 (483)
Q Consensus       248 ~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~  322 (483)
                      +....+|.+|.++++++.+++++.+|++.|.++     +++++||+|.   +|   +++|+||.+|+++..         
T Consensus       134 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~~---------  198 (286)
T 2oux_A          134 YEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVND---------  198 (286)
T ss_dssp             SCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTSC---------
T ss_pred             CChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcCC---------
Confidence            334445557888999999999999999999987     8899999954   45   899999999987531         


Q ss_pred             CCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          323 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       323 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                          ...            .++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||..|++..+.+
T Consensus       199 ----~~~------------~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 ----DDT------------LIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             ----TTS------------BHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----CCC------------cHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                112            3455588899999999999999999999999999999999999999999999986653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.42  E-value=9e-13  Score=118.90  Aligned_cols=133  Identities=10%  Similarity=0.127  Sum_probs=98.9

Q ss_pred             eEEe--CCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCC----Ccccccccccc
Q 011558          261 LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSI  334 (483)
Q Consensus       261 ~v~v--~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~----~~~~~~~v~~l  334 (483)
                      ++++  .+++++.+|++.|.+++++.+||+++ .++|   +++|+||..|+++.+..........    ...+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            6778  99999999999999999999999931 1245   8999999999999876432110000    00000000000


Q ss_pred             c-ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          335 Q-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       335 ~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      . .......++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|+||++||++.+.
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            0 00122356778988999999999999999999999999999999 899999999999998665

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.40  E-value=2.3e-12  Score=133.65  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=103.2

Q ss_pred             ccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC
Q 011558          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  322 (483)
Q Consensus       248 ~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~  322 (483)
                      +..+.+|.+|.++++++++++++.+|++.|.++     +++++||+|+   ++   +++|++|.+|++..-         
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~~---------  216 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD---------  216 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHSC---------
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcCC---------
Confidence            455667778999999999999999999999986     5799999954   35   899999999987520         


Q ss_pred             CCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          323 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       323 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                          .+.            +++++|.+++.++++++++.+|++.|.+++...+||+|++|+++|+||.+|+++...+
T Consensus       217 ----~~~------------~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 ----PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ----TTS------------BGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ----CCC------------cHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence                122            3455598899999999999999999999999999999999999999999999986653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.39  E-value=1.5e-12  Score=135.85  Aligned_cols=115  Identities=16%  Similarity=0.250  Sum_probs=100.9

Q ss_pred             ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      .+.|..+++++.+++++.+++++|.+++++++||+|+  +++++|+||.+|++..   .      -.+.++.+       
T Consensus       116 ~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~------~~~~~V~~-------  179 (511)
T 3usb_A          116 ESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q------DYSIKISD-------  179 (511)
T ss_dssp             SSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C------CSSSBHHH-------
T ss_pred             ccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c------cCCCcHHH-------
Confidence            3447778899999999999999999999999999998  8999999999999641   1      11356777       


Q ss_pred             CCCCcccCCC-cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|.+ +++++.+++++.+++++|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus       180 ------vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          180 ------VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             ------HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence                  6665 789999999999999999999999999999 5899999999999999874

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.33  E-value=5.3e-12  Score=131.86  Aligned_cols=115  Identities=19%  Similarity=0.287  Sum_probs=100.8

Q ss_pred             ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      .++|.+++.++.+++++.+++++|.+++++.+||+|  ++++++|+|+.+|++....         .+.++.+       
T Consensus        93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~---------~~~~v~~-------  156 (491)
T 1zfj_A           93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD---------YNAPISE-------  156 (491)
T ss_dssp             TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC---------SSSBTTT-------
T ss_pred             HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhcc---------CCCcHHH-------
Confidence            456888999999999999999999999999999999  7899999999999985310         1234443       


Q ss_pred             CCCCcccCCC-cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~-~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|.+ +++++.+++++.+++++|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence                  7776 788999999999999999999999999999 5899999999999999875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.29  E-value=9.4e-13  Score=136.85  Aligned_cols=114  Identities=15%  Similarity=0.269  Sum_probs=85.7

Q ss_pred             ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCC
Q 011558          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  423 (483)
Q Consensus       344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~  423 (483)
                      .++|..+++++.+++++.+++++|.+++++.+||+|++++++|+||.+|++..   .   .   .+.++.+         
T Consensus        92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~---~---~~~~v~d---------  153 (496)
T 4fxs_A           92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T---D---LTKSVAA---------  153 (496)
T ss_dssp             CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C---C---TTSBGGG---------
T ss_pred             ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c---c---CCCcHHH---------
Confidence            34578889999999999999999999999999999999999999999998621   0   0   1244554         


Q ss_pred             CCcccCC-C-cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          424 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       424 ~~~~~m~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                          +|. + +++++.+++++.+++++|.+++++.+|||| ++|+++|+||+.||++..
T Consensus       154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred             ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence                665 3 588999999999999999999999999999 589999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.27  E-value=4.1e-13  Score=140.20  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCC
Q 011558          347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  423 (483)
Q Consensus       347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~  423 (483)
                      |.++++++.+++++.+|+++|.+++++++||+|++   ++++|+||.+|++.. . .   .   .+.++.+         
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~-~---~---~~~~V~d---------  165 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L-T---Q---TETKVSD---------  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-c---c---ccCcHHH---------
Confidence            77789999999999999999999999999999987   899999999999863 1 0   0   1234454         


Q ss_pred             CCcccCCCc--ceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          424 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       424 ~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                          +|.++  ++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++.+.
T Consensus       166 ----iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          166 ----MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ----HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence                66655  89999999999999999999999999999 5899999999999998874

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.26  E-value=8.1e-12  Score=131.51  Aligned_cols=120  Identities=13%  Similarity=0.138  Sum_probs=99.2

Q ss_pred             CCCCCCeEEeCCC-CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558          255 RPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (483)
Q Consensus       255 ~~~~~~~v~v~~~-~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~  333 (483)
                      .+|.++++++.++ +++.+|+++|.+++++++||+|  .+++   +++|+||.+||++.+......       ...    
T Consensus       388 diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd--~~~g---~lvGiVt~~Dll~~l~~~~~~-------~~~----  451 (527)
T 3pc3_A          388 ELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD--QDDG---SVLGVVGQETLITQIVSMNRQ-------QSD----  451 (527)
T ss_dssp             GGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC--TTTC---CEEEEEEHHHHHHHHHHHCCC-------TTS----
T ss_pred             HhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE--CCCC---EEEEEEEHHHHHHHHHhccCc-------CCC----
Confidence            4678899999999 9999999999999999999995  1245   899999999999988643111       122    


Q ss_pred             ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC----CcEEEEEeHHHHHHHHhcc
Q 011558          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKDK  400 (483)
Q Consensus       334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGiit~~di~~l~~~~  400 (483)
                              .+.++|.++++++.+++++.+++++|.++++  +||+|++    |+++|+||+.||++.+.+.
T Consensus       452 --------~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          452 --------PAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             --------BGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             --------cHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence                    3455599999999999999999999976654  7999974    8999999999999977643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.26  E-value=5e-13  Score=139.68  Aligned_cols=116  Identities=16%  Similarity=0.285  Sum_probs=5.2

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  422 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~  422 (483)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|++....         .+.++.+        
T Consensus        97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~--------  159 (494)
T 1vrd_A           97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKD--------  159 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHH--------
Confidence            34568889999999999999999999999999999998899999999999986210         1234444        


Q ss_pred             CCCcccCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          423 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       423 ~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                           +|.+  +++++.+++++.+++++|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       160 -----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          160 -----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -------------------------------------------------------CHHHHT
T ss_pred             -----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence                 6665  788999999999999999999999999999 5899999999999999874

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.25  E-value=6e-11  Score=123.73  Aligned_cols=115  Identities=13%  Similarity=0.183  Sum_probs=96.9

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      +..+++++.+++++.+|+++|.+++++++||+++. .++   +++|+||.+|++..            .....+      
T Consensus       119 m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~~------------~~~~~~------  176 (511)
T 3usb_A          119 VISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRFI------------QDYSIK------  176 (511)
T ss_dssp             SSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTTC------------CCSSSB------
T ss_pred             cccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhhh------------ccCCCc------
Confidence            56678899999999999999999999999999531 134   89999999998530            011233      


Q ss_pred             cccccccccccCC-CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          337 GTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       337 ~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                            +.++|.+ +++++++++++.+++++|.+++++.+||+|++|+++|++|..|+++....
T Consensus       177 ------V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          177 ------ISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ------HHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------HHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                  4455887 89999999999999999999999999999999999999999999987653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.24  E-value=7.2e-13  Score=137.60  Aligned_cols=114  Identities=14%  Similarity=0.264  Sum_probs=1.3

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  422 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~  422 (483)
                      +.++|..+++++.+++++.+|+++|.+++++.+||+| +++++|+||.+|+.....         .+.++.+        
T Consensus        90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~--------  151 (490)
T 4avf_A           90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAA--------  151 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHH--------
Confidence            3455888899999999999999999999999999999 899999999999864211         1244555        


Q ss_pred             CCCcccCC-C-cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          423 NPSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       423 ~~~~~~m~-~-~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                           +|. + +++++.+++++.+|+++|.+++++.+|||| ++|+++|+||+.||++..
T Consensus       152 -----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          152 -----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ------------------------------------------------------------
T ss_pred             -----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence                 665 3 588999999999999999999999999999 589999999999999874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.20  E-value=1.4e-12  Score=136.13  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=18.1

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      |.++++++.+++++.+|+++|.+++++++||++++...+   +++|+||.+|+++.  .         .....       
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~~-------  161 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---------TQTET-------  161 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---------ccccC-------
Confidence            566889999999999999999999999999995411115   89999999998753  0         00122       


Q ss_pred             cccccccccccCCC--eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHH
Q 011558          337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  414 (483)
Q Consensus       337 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~  414 (483)
                           .+.++|.++  ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.........    + ....
T Consensus       162 -----~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~~----d-~~~~  231 (503)
T 1me8_A          162 -----KVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELV----D-SQKR  231 (503)
T ss_dssp             -----------------------------------------------------------------CCCCB----C-TTSC
T ss_pred             -----cHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccchh----c-cccc
Confidence                 345558887  999999999999999999999999999999999999999999998554221100    0 0000


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEE
Q 011558          415 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI  459 (483)
Q Consensus       415 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~V  459 (483)
                                   ++.  ...+.. ....+.++.|.+.+++.+.|
T Consensus       232 -------------l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          232 -------------YLV--GAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             -------------BCC--EEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             -------------ccc--ccccCc-hhHHHHHHHHHhhhccceEE
Confidence                         111  123344 66667788888889886544

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.16  E-value=3.1e-12  Score=130.08  Aligned_cols=109  Identities=19%  Similarity=0.242  Sum_probs=0.0

Q ss_pred             cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCC
Q 011558          347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  423 (483)
Q Consensus       347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~  423 (483)
                      |..+++++.++.++.+|+++|.+++++.+||+|+   +++|+|++|.+|+...   .    .   +.++.+         
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d----~---~~~V~e---------  204 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---D----A---ETPIKS---------  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---c----c---ceEhhh---------
Confidence            5567889999999999999999999999999986   6799999999998641   1    1   234555         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558          424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  479 (483)
Q Consensus       424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~  479 (483)
                          +|+.+++++..+.++.+|.++|.++++..||||| ++++|+|+||+.|+++.
T Consensus       205 ----vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          205 ----VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             ----hcccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence                7877899999999999999999999999999999 58999999999999875

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.15  E-value=3e-11  Score=129.72  Aligned_cols=134  Identities=12%  Similarity=0.063  Sum_probs=97.1

Q ss_pred             CCC--CCeEEeCCCCCHHHHHHHHH-hCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCC--------
Q 011558          256 PCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL--------  324 (483)
Q Consensus       256 ~~~--~~~v~v~~~~sl~~a~~~m~-~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~--------  324 (483)
                      +|.  ++++++++++++.|+.+.|. +++++++||+|+   ++   +++|++|.+|+++.+...........        
T Consensus       458 iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~  531 (632)
T 3org_A          458 IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVL  531 (632)
T ss_dssp             HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC----------------
T ss_pred             HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccceec
Confidence            456  78999999999999999999 799999999964   45   89999999999987754321100000        


Q ss_pred             ---ccccccccccc-----------------ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcE
Q 011558          325 ---PILQQPVSSIQ-----------------LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL  384 (483)
Q Consensus       325 ---~~~~~~v~~l~-----------------i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l  384 (483)
                         ..+.+.++.+.                 +-...+++.++|++++.++++++++.+|+++|.+++++.+||+ ++|++
T Consensus       532 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~l  610 (632)
T 3org_A          532 LDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKL  610 (632)
T ss_dssp             ---------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEE
T ss_pred             cCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEE
Confidence               00000111110                 0011124788999999999999999999999999999999999 68999


Q ss_pred             EEEEeHHHHHHH
Q 011558          385 LDIYSRSDITAL  396 (483)
Q Consensus       385 vGiit~~di~~l  396 (483)
                      +|+||++|+++.
T Consensus       611 vGIVT~~Dll~~  622 (632)
T 3org_A          611 VGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEGGGTEEC
T ss_pred             EEEEehhhHHHH
Confidence            999999999763

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.11  E-value=1.4e-11  Score=125.30  Aligned_cols=112  Identities=21%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      -.+++++.|+.++.||+++|.+++++.+||+++...++   +++||+|.+|+. +.     .       ...+       
T Consensus       145 i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~-----d-------~~~~-------  201 (556)
T 4af0_A          145 ITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ-----D-------AETP-------  201 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc-----c-------cceE-------
Confidence            45678999999999999999999999999996533355   899999999963 21     1       1233       


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                           +.++|+++++++....++.+|.++|.++++..+||||++++++|+||+.|+.+..
T Consensus       202 -----V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          202 -----IKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ------------------------------------------------------------
T ss_pred             -----hhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                 4455999999999999999999999999999999999999999999999998744

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.11  E-value=6e-10  Score=116.26  Aligned_cols=115  Identities=15%  Similarity=0.190  Sum_probs=97.8

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|..+++++.+++++.+|++.|.+++++++||++. .+++   +++|+||.+|+++..     .       ...      
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~~-----~-------~~~------  152 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFIS-----D-------YNA------  152 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCS-----C-------SSS------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhhc-----c-------CCC------
Confidence            46678899999999999999999999999999951 0245   899999999987531     0       122      


Q ss_pred             ccccccccccccCC-CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            .+.++|.+ ++.++.+++++.+++++|.+++++.+||+|++|+++|++|..||++...
T Consensus       153 ------~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          153 ------PISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------BTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                  34555888 8899999999999999999999999999999999999999999999766

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.08  E-value=5.1e-11  Score=123.77  Aligned_cols=113  Identities=15%  Similarity=0.172  Sum_probs=83.1

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      .|..+++++++++++.+|+++|.+++++++||+++   ++   +++|+||.+|++..      .      ....      
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~~------~------~~~~------  149 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRFV------T------DLTK------  149 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTTC------C------CTTS------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhhc------c------cCCC------
Confidence            35678899999999999999999999999999964   35   89999999998510      0      1122      


Q ss_pred             ccccccccccccC-C-CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            .+.++|+ + +++++.+++++.+++++|.++++..+||+|++|+++|+||+.|+++...
T Consensus       150 ------~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          150 ------SVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             ------BGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             ------cHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence                  3445587 3 5889999999999999999999999999999999999999999998543

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.06  E-value=3.1e-10  Score=122.47  Aligned_cols=77  Identities=26%  Similarity=0.433  Sum_probs=63.8

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCee----eCCCC
Q 011558           20 LVPVRFIWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV----SGNYG   94 (483)
Q Consensus        20 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~----~~~~g   94 (483)
                      ..-|.|.||.+|+.++|.|+||+|.+. .+|++.   ++.|.+++.||||.|+|||+|||+|..||.+|..    .++++
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~---g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~~   92 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQE---GKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGYK   92 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEEC---SSEEEEEEEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGGT
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceEc---CCEEEEEEEeCCceEEEEEEECCeEecCCCCCCcccccccCcC
Confidence            567889999999999999999999974 467653   6899999999999999999999999999988844    24444


Q ss_pred             CeeeE
Q 011558           95 VVNCV   99 (483)
Q Consensus        95 ~~nn~   99 (483)
                      ..+.+
T Consensus        93 ~~~~~   97 (645)
T 4aef_A           93 FHREV   97 (645)
T ss_dssp             EEEEE
T ss_pred             cccce
Confidence            44443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.05  E-value=1.8e-12  Score=136.09  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|+   +++++|+||.+|+......       ..+.++.+     
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~-----  177 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSE-----  177 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHH-----
Confidence            44568888899999999999999999999999999997   5899999999998763210       01234444     


Q ss_pred             CCCCCCcccCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          420 QDANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       420 ~~~~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                              +|.+  +++++.+++++.+++++|.+++++++|||| ++|+++|+||++||++.+
T Consensus       178 --------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          178 --------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred             --------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence                    6666  789999999999999999999999999999 589999999999998754

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.03  E-value=2.6e-11  Score=126.23  Aligned_cols=110  Identities=17%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             cccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCC
Q 011558          345 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  424 (483)
Q Consensus       345 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~  424 (483)
                      +.|..++.++.+++++.+++++|.+++++.+||+|+ ++++|+++.+|++.  .      .   +.++.+          
T Consensus        97 ~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--~------~---~~~v~~----------  154 (486)
T 2cu0_A           97 RLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--R------E---GKLVKE----------  154 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--C------C---CCCHHH----------
Confidence            347778899999999999999999999999999997 99999999999875  1      0   234454          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                         +|.++++++.+++++.+++++|.+++++.+|||| ++|+++|+||..||++.+
T Consensus       155 ---im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          155 ---LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             --------------------------------------------------------
T ss_pred             ---HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence               5666788999999999999999999999999999 589999999999999875

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.03  E-value=8e-11  Score=122.24  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      .|..+++++++++++.+|+++|.+++++++||++    ++   +++|+||.+|++...            ....      
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~~------------~~~~------  147 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVKP------------NAGD------  147 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhcc------------ccCC------
Confidence            3567788999999999999999999999999995    34   899999999985211            0122      


Q ss_pred             ccccccccccccC-C-CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            .+.++|. + +++++.+++++.+|+++|.++++..+||+|++|+++|+||+.|+++...
T Consensus       148 ------~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          148 ------TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ------cHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                  3445588 4 6899999999999999999999999999999999999999999998654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.01  E-value=8.9e-11  Score=122.60  Aligned_cols=114  Identities=18%  Similarity=0.294  Sum_probs=5.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   ++   +++|+||.+|+++.-     .       ...      
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~~-----~-------~~~------  155 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFEK-----N-------LSK------  155 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhhc-----C-------CCC------
Confidence            35678899999999999999999999999999964   35   899999999987520     0       122      


Q ss_pred             ccccccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          336 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       336 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                            .+.++|.+  ++.++.+++++.+++++|.++++..+||+|++|+++|++|..|+++....
T Consensus       156 ------~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          156 ------KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -----------------------------------------------------------CHHHHTC
T ss_pred             ------cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence                  34555887  89999999999999999999999999999999999999999999987653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.84  E-value=4.2e-10  Score=117.09  Aligned_cols=109  Identities=15%  Similarity=0.326  Sum_probs=0.4

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      |..+++++.+++++.++++.|.+++++++||+++    +   +++|+++.+|++.   .           ...       
T Consensus        99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~-----------~~~-------  150 (486)
T 2cu0_A           99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R-----------EGK-------  150 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C-----------CCC-------
Confidence            5578899999999999999999999999999953    4   7999999999864   0           012       


Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                           .+.++|.+++.++.+++++.+++++|.+++++.+||+|++|+++|++|.+||++...
T Consensus       151 -----~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          151 -----LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------------C
T ss_pred             -----CHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                 244458888999999999999999999999999999999999999999999998654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.78  E-value=9.5e-09  Score=76.99  Aligned_cols=46  Identities=15%  Similarity=0.341  Sum_probs=42.4

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKV   47 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            57899999999999999999999999998 68999999999998643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.75  E-value=2.5e-10  Score=119.73  Aligned_cols=117  Identities=17%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|+++|.+++++.+||+|++..++   +++|+||.+|++....          .....      
T Consensus       113 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~------  173 (514)
T 1jcn_A          113 GFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHTT------  173 (514)
T ss_dssp             TSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC-------------------------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCCC------
Confidence            4567788999999999999999999999999995311135   8999999999865210          00112      


Q ss_pred             ccccccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          336 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       336 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                            .+.++|.+  +++++.+++++.+++++|.++++..+||+|++|+++|++|++|+++..
T Consensus       174 ------~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          174 ------LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             ------CHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                  34555888  899999999999999999999999999999999999999999988643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.75  E-value=1.6e-08  Score=75.68  Aligned_cols=47  Identities=26%  Similarity=0.378  Sum_probs=42.7

Q ss_pred             eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHH
Q 011558          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (483)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~  314 (483)
                      ++++.|++++.+|+++|.+++++++||+++    |   +++||+|.+||++.+.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~----~---~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----D---EILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHHHH
Confidence            689999999999999999999999999953    4   8999999999987664

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.53  E-value=1.7e-07  Score=79.09  Aligned_cols=58  Identities=21%  Similarity=0.437  Sum_probs=47.4

Q ss_pred             cceEEEEEecC---CCceEEEEec---cCCCCC--CCCCCcCC--CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           19 ILVPVRFIWPN---GGRRVSLSGS---FTRWSE--PMPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        19 ~~~~~~f~~~~---~~~~V~l~Gs---f~~W~~--~~~m~~~~--~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      ..++|+|....   .++.|+|+|+   +.+|++  .++|...+  .....|++++.||+| .++|||++
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            45788888865   3789999999   999997  35888762  127899999999998 59999998

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.94  E-value=5.8e-06  Score=67.32  Aligned_cols=60  Identities=25%  Similarity=0.472  Sum_probs=46.9

Q ss_pred             CcceEEEEEecCC---CceEEEEeccC---CCCC--CCCCCcCCC--CCCeEEEEEEcCCc-eEEEEEEEc
Q 011558           18 SILVPVRFIWPNG---GRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYVD   77 (483)
Q Consensus        18 ~~~~~~~f~~~~~---~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~vd   77 (483)
                      +..+.|+|...+.   |++|+|+|+..   +|++  .++|.....  .++.|++++.||+| .++|||++.
T Consensus         4 ~~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~   74 (108)
T 1ac0_A            4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRI   74 (108)
T ss_dssp             CCCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEEC
T ss_pred             CCeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEE
Confidence            3457788887654   78899999854   8996  468887631  25889999999998 599999993

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=97.87  E-value=6e-05  Score=76.24  Aligned_cols=85  Identities=22%  Similarity=0.292  Sum_probs=64.8

Q ss_pred             cceEEEEEecCC-C-------ceEEEE--eccC---CCCCCCCCCcCCCCCCeEEEEEEcCCceE-EEEEEEc-------
Q 011558           19 ILVPVRFIWPNG-G-------RRVSLS--GSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGHH-QYKFYVD-------   77 (483)
Q Consensus        19 ~~~~~~f~~~~~-~-------~~V~l~--Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g~~-~ykf~vd-------   77 (483)
                      ....|+|.|.++ |       ++|+|.  |..+   +|.+ .+|.|..+ +|+|+.++.||+|-| .|.|+||       
T Consensus        29 ~~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~-~~m~r~~~-~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~  106 (403)
T 3c8d_A           29 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQP-QSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIFS  106 (403)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------C-CBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTTC
T ss_pred             CcEEEEEEeeCCCcccccCccceEEEECcCCCccccccCc-cccccCCC-CCeEEEEEEECCCcEEEEEEEecCcccccc
Confidence            356799999876 4       689998  3222   1222 47888533 799999999999999 9999999       


Q ss_pred             -----------------CeeeeCCCCCeeeCC-CCCeeeEEEeccCC
Q 011558           78 -----------------GEWRHDENQPHVSGN-YGVVNCVYIAVPQP  106 (483)
Q Consensus        78 -----------------g~w~~d~~~~~~~~~-~g~~nn~~~v~~~~  106 (483)
                                       |..+.||.+|..... .|...|++++ ...
T Consensus       107 ~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~-p~~  152 (403)
T 3c8d_A          107 APSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM-PQA  152 (403)
T ss_dssp             CC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC-TTC
T ss_pred             cccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC-CCC
Confidence                             778899999977654 4888999999 653

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.32  E-value=0.00054  Score=73.10  Aligned_cols=67  Identities=25%  Similarity=0.549  Sum_probs=50.9

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEE---cCee--eeCCCCCeee
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~~   90 (483)
                      .|+|+ |...|++|.|+|+|++|+. .++|.+.. .+|+|++.++ +++|. .|+|.|   ||.+  ..||......
T Consensus        26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~-~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCCceeEeEECC-CCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence            46674 6777999999999999975 46898732 3799999988 67787 499998   6774  5777655544

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.06  E-value=0.00066  Score=73.86  Aligned_cols=62  Identities=21%  Similarity=0.484  Sum_probs=48.0

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-------cCCceEEEEEEEc---Cee--eeCCCCC
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-------LPPGHHQYKFYVD---GEW--RHDENQP   87 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------l~~g~~~ykf~vd---g~w--~~d~~~~   87 (483)
                      |+|. |...|++|+|+|+||+|+.. ++|.+..  .|+|++.++       +++|.+ |||.|+   |.|  +.||-..
T Consensus        67 v~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~--~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           67 TIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDK--FGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEECTTCSEEEEEEGGGTTCCTTCBCEECT--TSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCceeeceeCC--CCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            5664 78889999999999999864 6998754  799999998       677864 888886   455  3466444

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=96.99  E-value=0.00099  Score=71.88  Aligned_cols=67  Identities=31%  Similarity=0.512  Sum_probs=49.8

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEE---cCee--eeCCCCCeee
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w--~~d~~~~~~~   90 (483)
                      -|+|+ |...|++|.|+|+||+|+.. .||.+.. ..|+|++.++ +.+|. .|||.|   ||+|  +.||......
T Consensus       137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~~  211 (722)
T 3k1d_A          137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLG-PSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGTE  211 (722)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECG-GGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSBC
T ss_pred             eEEEEEECCCCCEEEEEeecCCCCCCcccCEEcC-CCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceeec
Confidence            35664 67779999999999999864 6998753 2599999987 77784 588888   5654  6777555443

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.45  E-value=0.0074  Score=47.99  Aligned_cols=64  Identities=16%  Similarity=0.321  Sum_probs=48.9

Q ss_pred             eEEEEEecCCCceEEEEeccC--CCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEcCe--eeeCCCC
Q 011558           21 VPVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE--WRHDENQ   86 (483)
Q Consensus        21 ~~~~f~~~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~--w~~d~~~   86 (483)
                      -.+++.|..+.++|+|-..+.  +|+..  ++|.+.. ++++++.+++||.| .++|+|. ||.  |-.+...
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~   75 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTK   75 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTS
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCc
Confidence            457788888899999999986  79874  4776653 35655799999976 7999996 775  8776543

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.41  E-value=0.0047  Score=66.67  Aligned_cols=58  Identities=22%  Similarity=0.500  Sum_probs=47.5

Q ss_pred             CCcceEEEEEecC-----CCceEEEEeccC---CCCC--------CC-CCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           17 GSILVPVRFIWPN-----GGRRVSLSGSFT---RWSE--------PM-PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        17 ~~~~~~~~f~~~~-----~~~~V~l~Gsf~---~W~~--------~~-~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +...++|+|...+     .|++|+|+|+-.   +|++        .+ +|...+  ...|+++++||+| .++|||++
T Consensus       578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~--~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPN--YPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTT--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCC--CCcEEEEEEeCCCCeEEEEEEE
Confidence            4467888898865     377999999987   7998        45 777654  6789999999998 59999998

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=96.05  E-value=0.031  Score=58.96  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=46.8

Q ss_pred             CcceEEEEEecCC---CceEEEEeccC---CCCCC--CCCCcCCC--CCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIWPNG---GRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~~---~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +..++|+|...+.   |++|+|+|+-.   ||++.  ++|...+-  ++..|+++++||+| .++|||++
T Consensus       494 ~~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          494 PTSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             CSEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            3457888888664   88999999886   89974  47877541  13789999999998 59999998

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.78  E-value=0.018  Score=62.14  Aligned_cols=57  Identities=26%  Similarity=0.477  Sum_probs=47.1

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCc---CCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~---~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      ...++|+|....    .|+.|+|+|+-.   +|++.  + +|..   .+  ...|++++.||.| .++|||++
T Consensus       577 ~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYS--YPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSC--TTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCC--CCcEEEEEEeCCCCcEEEEEEE
Confidence            467899999865    388999999887   89964  5 6776   33  6799999999988 69999998

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=95.72  E-value=0.0095  Score=63.04  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=47.6

Q ss_pred             CCcceEEEEE-ecCCCceEEE-EeccCCCCC----CCCCCcCC--CCCCeEEEEEEcCCceEEEEEEEc
Q 011558           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE----PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (483)
Q Consensus        17 ~~~~~~~~f~-~~~~~~~V~l-~Gsf~~W~~----~~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~vd   77 (483)
                      ....+.++|. |...+++|.| .|+|++|+.    .++|.+..  +..|+|++.++.....+.|||.|.
T Consensus        19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           19 SETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             ETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            3466778874 6677999999 899999975    45898753  224579999998877899999984

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.48  E-value=0.008  Score=63.24  Aligned_cols=61  Identities=21%  Similarity=0.233  Sum_probs=48.9

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe-eeeCCCCCee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-WRHDENQPHV   89 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-w~~d~~~~~~   89 (483)
                      ++|+ |...|++|.|+|.|+   ..++|.+.+  +|+|++.++ +.+|. .|+|.|||. ...||.....
T Consensus        11 ~~f~vwap~a~~v~l~~~~~---~~~~m~~~~--~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~   74 (558)
T 3vgf_A           11 VIFTLWAPYQKSVKLKVLEK---GLYEMERDE--KGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQ   74 (558)
T ss_dssp             EEEEEECTTCSCCEEEETTT---EEEECEECT--TCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCC
T ss_pred             EEEEEECCCCCEEEEEEecC---ceeecccCC--CCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhc
Confidence            4554 677799999999997   457998865  799999987 77885 699999997 7888866543

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.41  E-value=0.012  Score=62.34  Aligned_cols=62  Identities=21%  Similarity=0.390  Sum_probs=48.5

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeee
Q 011558           22 PVRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVS   90 (483)
Q Consensus        22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~   90 (483)
                      .|+| +|...+++|.|+|+   + ..++|.+.+  .|+|++.+++.+|.+ |+|.|||....||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~--~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCC--CcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            4566 47777999999994   2 357998865  799999999888886 9999999777788665544

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.37  E-value=0.026  Score=60.79  Aligned_cols=57  Identities=28%  Similarity=0.483  Sum_probs=47.3

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCC--CC-CCCc---CCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSE--PM-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~--~~-~m~~---~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      ...++|+|....    .|+.|+|+|+-.   +|++  .+ +|..   .+  ...|++++.||.| .++|||++
T Consensus       581 ~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          581 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQ--YPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSC--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCC--CCcEEEEEEeCCCCcEEEEEEE
Confidence            457899999866    388999999888   8996  45 7776   33  6799999999998 69999998

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.17  E-value=0.0082  Score=65.40  Aligned_cols=55  Identities=16%  Similarity=0.281  Sum_probs=43.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-----CCCCCcCCCCCCeEEEEEE-cC------CceEEEEEEEcCee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LP------PGHHQYKFYVDGEW   80 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-l~------~g~~~ykf~vdg~w   80 (483)
                      |+|. |...|++|.|++ |++|..     .++|.+..  +|+|++.++ +.      +|.|.|+|.|+|.|
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~   85 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN   85 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCC--CCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence            5664 777899999999 887653     35787754  699999887 56      89989999999753

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.09  E-value=0.035  Score=59.90  Aligned_cols=57  Identities=30%  Similarity=0.505  Sum_probs=46.8

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCc---CCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~---~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      ...++|+|....    .|+.|+|+|+-.   +|++.  + +|..   ..  ...|++++.||.| .++|||++
T Consensus       584 ~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQ--YPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSC--TTCEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCC--CCeEEEEEEeCCCCcEEEEEEE
Confidence            467899999865    388999999887   89963  5 6765   33  6799999999998 69999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.04  E-value=0.013  Score=62.05  Aligned_cols=61  Identities=21%  Similarity=0.255  Sum_probs=47.8

Q ss_pred             CCcceEEEEE-ecCCCceEEE-EeccCCCCC------CCCCCcCC--CCCCeEEEEEEcCCceEEEEEEEc
Q 011558           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE------PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (483)
Q Consensus        17 ~~~~~~~~f~-~~~~~~~V~l-~Gsf~~W~~------~~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~vd   77 (483)
                      ....+.++|+ |...+++|.| .|+|++|+.      .+||.+.+  +..|+|++.++.....+.|+|.|.
T Consensus        19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           19 DSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            4567888886 6667999999 799999965      46998753  224579999988777889999885

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.89  E-value=0.035  Score=57.44  Aligned_cols=59  Identities=17%  Similarity=0.268  Sum_probs=46.1

Q ss_pred             CCcceEEEEEecC----CCceEEEEeccC---CCCCCC---CCCcCCCCCCeEEEEEEcCCce-EEEEEEE
Q 011558           17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEPM---PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (483)
Q Consensus        17 ~~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~~---~m~~~~~~~~~~~~~~~l~~g~-~~ykf~v   76 (483)
                      ....++|+|...+    .|++|+|+|+-.   ||++..   +|.... .++.|+++++||.|. ++|||++
T Consensus       416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~-~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDS-HSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEET-TTTEEEEEEEEETTCCEEEEEEE
T ss_pred             ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCC-CCCEEEEEEEECCCCcEEEEEEE
Confidence            4467899998754    389999999887   799752   565522 145999999999984 9999998

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=94.78  E-value=0.027  Score=60.33  Aligned_cols=53  Identities=21%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             EEEE-ecCCCceEEEEeccCCCC--CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~   79 (483)
                      ++|+ |...|++|.|++ |+++.  ..++|.+..  +|+|++.++ +.+|.+ |+|.|+|.
T Consensus        21 ~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           21 VNFTLFSAHAERVELCV-FDANGQEHRYDLPGHS--GDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEE--TTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             EEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCC--CCEEEEEECCCCCCCE-EEEEEeee
Confidence            6664 677799999999 98765  246898654  799999886 677876 99999984

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=94.48  E-value=0.04  Score=59.68  Aligned_cols=55  Identities=18%  Similarity=0.415  Sum_probs=42.3

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-----CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w   80 (483)
                      -|+|. |...|++|.|++ |+++..     .++|.+..  .|+|.+.++ +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKT--GDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEES--SSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCC--CCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            36675 677799999999 876442     35887754  799999886 678887 999999854

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=93.14  E-value=0.087  Score=59.31  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC-CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc------Ce----eeeCCCCCe
Q 011558           23 VRFI-WPNGGRRVSLSG-SFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQPH   88 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~G-sf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~~   88 (483)
                      ++|. |...|++|.|++ +|++|.. .++|.+.. ..|+|++.++ +.+|.+ |+|.|+      |.    ...||....
T Consensus       306 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~-~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~~  383 (1083)
T 2fhf_A          306 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAHS  383 (1083)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEcCCCCccceEECeECC-CCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccce
Confidence            5555 777899999999 9999975 46888533 2699999875 567764 777775      33    467776554


Q ss_pred             ee
Q 011558           89 VS   90 (483)
Q Consensus        89 ~~   90 (483)
                      ..
T Consensus       384 ~~  385 (1083)
T 2fhf_A          384 LS  385 (1083)
T ss_dssp             BC
T ss_pred             ec
Confidence            44

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=92.89  E-value=0.091  Score=56.88  Aligned_cols=64  Identities=22%  Similarity=0.354  Sum_probs=46.7

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-CCCCCcCCCCCCeEEEEEEc-CCceEEEEEEEc--Cee--eeCCCCCee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRL-PPGHHQYKFYVD--GEW--RHDENQPHV   89 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vd--g~w--~~d~~~~~~   89 (483)
                      ++|+ |...|++|.|++.|++|.. .++|.+.+  .|+|++.++- .+| ..|+|.|+  |.|  ..||....+
T Consensus       115 ~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g-~~Y~f~v~~~g~~~~~~DPya~~~  185 (718)
T 2e8y_A          115 TVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLE--KGVYAVTVTGDLHG-YEYLFCICNNSEWMETVDQYAKAV  185 (718)
T ss_dssp             EEEEEECTTCSEEEEEEECTTSCCEEEECEECG--GGEEEEEEESCCTT-CEEEEEEEETTEEEEECCTTCSSB
T ss_pred             EEEEEECCCCCEEEEEEEcCCCcceEEeCccCC--CCEEEEEECCCCCC-CeEEEEEEeCCeEEEecCCccccc
Confidence            5664 7777999999999998865 36998865  6999998874 456 35666664  764  567755543

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=92.73  E-value=0.067  Score=59.33  Aligned_cols=53  Identities=15%  Similarity=0.091  Sum_probs=37.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCC--CCCcCCCCCCeEEEEEE-cCCceEEEEEEEcC
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEPM--PMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG   78 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~~--~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg   78 (483)
                      |+|+ |...|++|.|++-+++|.+..  +|.+.+  +|+|++.++ +.+|. .|+|.|++
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~--~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLKES--NGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECEEE--TTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCC--CCEEEEEECCCCCCC-EEEEEEeC
Confidence            5666 788899999999666666533  333333  799999987 45564 58888875

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=92.19  E-value=0.16  Score=54.84  Aligned_cols=65  Identities=14%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCcCCCCCCeEEEEEEcC--Cc-----eEEEEEEEc--Ce--eeeCCCC
Q 011558           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~l~--~g-----~~~ykf~vd--g~--w~~d~~~   86 (483)
                      |+|+ |...|++|.|++ +|++|..   .++|.+..  .|+|++.++-.  +|     -+.|+|.|+  |.  ...||..
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCC--CCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            5665 787899999999 8988864   47898854  79999888641  34     267888886  54  4577765


Q ss_pred             Cee
Q 011558           87 PHV   89 (483)
Q Consensus        87 ~~~   89 (483)
                      ..+
T Consensus       104 ~~~  106 (714)
T 2ya0_A          104 KSL  106 (714)
T ss_dssp             SEE
T ss_pred             eee
Confidence            543

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=92.04  E-value=0.028  Score=59.34  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             CCcceEEEEE-ecCCCceEEE-EeccCCCCC---CCCCCcCCC--CCCeEEEEEEcCCceEEEEEEEc
Q 011558           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE---PMPMSPSEG--CPAVFQIICRLPPGHHQYKFYVD   77 (483)
Q Consensus        17 ~~~~~~~~f~-~~~~~~~V~l-~Gsf~~W~~---~~~m~~~~~--~~~~~~~~~~l~~g~~~ykf~vd   77 (483)
                      ....+.++|. |...+++|.| .|+|++|+.   .++|.+...  ..|+|++.++.......|||.|.
T Consensus        19 ~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           19 NGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             SSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            4456777774 6667999999 799999975   358987432  24679999988777788888873

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=91.98  E-value=0.029  Score=58.53  Aligned_cols=57  Identities=25%  Similarity=0.433  Sum_probs=0.0

Q ss_pred             CcceEEEEEe-cC---CCceEEEEeccC---CCCC--CCCCCc-CCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIW-PN---GGRRVSLSGSFT---RWSE--PMPMSP-SEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~-~~---~~~~V~l~Gsf~---~W~~--~~~m~~-~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      ...++|+|.. .+   .|++|+|+|+-.   +|++  .++|.. .+  ...|++++.||+| .++|||++
T Consensus       428 ~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~--~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          428 GALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSG--YPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             CCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCC--CCeEEEEEEeCCCCcEEEEEEE
Confidence            3568889986 33   388999999887   7987  458874 33  5789999999998 59999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=91.77  E-value=0.26  Score=54.77  Aligned_cols=61  Identities=26%  Similarity=0.476  Sum_probs=45.6

Q ss_pred             cceEEEEEecCCCceEEEEecc-------CCCCCCC---CCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeee
Q 011558           19 ILVPVRFIWPNGGRRVSLSGSF-------TRWSEPM---PMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (483)
Q Consensus        19 ~~~~~~f~~~~~~~~V~l~Gsf-------~~W~~~~---~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~   81 (483)
                      ..+||..--...+..+.+.|+|       .+|++.-   -|.+..  +|.|+.+-.||+|.|+||+-++|.|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~~--~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          151 EKIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKIN--PNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CEECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEEE--TTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             ccccccccccccccccccccchhhhccccccCCCCCCcceeeccC--CcceeeeeccCCcceeEEEeecCccc
Confidence            3556655555566678899977       4798753   333333  79999999999999999999998884

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=90.29  E-value=0.27  Score=52.08  Aligned_cols=62  Identities=24%  Similarity=0.411  Sum_probs=46.1

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc-CeeeeCCCCCeeeC
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWRHDENQPHVSG   91 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd-g~w~~d~~~~~~~~   91 (483)
                      ++|+ |...|++|.|++   +|.. .||.+.+  +|+|++.++ +.+|. .|+|.|+ |....||......+
T Consensus        44 ~~F~vwap~a~~v~l~~---~~~~-~~m~~~~--~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~~  108 (618)
T 3m07_A           44 VRFRLWATGQQKVMLRL---AGKD-QEMQANG--DGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQKT  108 (618)
T ss_dssp             EEEEEECTTCSCEEEEE---TTEE-EECEECS--TTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBSS
T ss_pred             EEEEEECCCCCEEEEEE---CCCc-ccCeecC--CEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeeec
Confidence            5665 677799999998   3543 7998865  799999874 66775 6899995 55888887665543

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=90.21  E-value=0.12  Score=56.88  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=47.9

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCcCCCCCCeEEEEEEcCCce-----EEEEEEEcC--e--eeeCCCCCe
Q 011558           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLPPGH-----HQYKFYVDG--E--WRHDENQPH   88 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~l~~g~-----~~ykf~vdg--~--w~~d~~~~~   88 (483)
                      |+|+ |...|++|.|++ ++++|..   .++|.+..  +|+|++.+.+.+|.     +.|+|.|++  .  ...||....
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNN--KGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECT--TSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccCC--CCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            5665 677799999998 7888853   47898854  79999999776662     678888863  3  567876554


Q ss_pred             e
Q 011558           89 V   89 (483)
Q Consensus        89 ~   89 (483)
                      +
T Consensus       224 ~  224 (877)
T 3faw_A          224 L  224 (877)
T ss_dssp             B
T ss_pred             c
Confidence            3

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=89.82  E-value=0.35  Score=44.07  Aligned_cols=51  Identities=16%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             CceEEEEeccCCCCC--CCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeee
Q 011558           31 GRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRH   82 (483)
Q Consensus        31 ~~~V~l~Gsf~~W~~--~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~   82 (483)
                      .+++|++|++++|..  ..+|.+....+|.|...+.|+.|. +|||.-+..|-.
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~~   64 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEYI   64 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCCB
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCccc
Confidence            567999999998864  358888776689999999998775 899998766643

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.58  E-value=0.25  Score=54.99  Aligned_cols=62  Identities=16%  Similarity=0.275  Sum_probs=43.7

Q ss_pred             EEE-EecCCCceEEEEeccCCCC----CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEE--cCe--eeeCCCCCe
Q 011558           23 VRF-IWPNGGRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV--DGE--WRHDENQPH   88 (483)
Q Consensus        23 ~~f-~~~~~~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v--dg~--w~~d~~~~~   88 (483)
                      ++| +|...|++|.|++ |++|.    ..++|.+.+  .|+|++.++ +.+|. .|+|.|  +|.  ++.||....
T Consensus       327 v~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          327 TSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSD--NGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECG--GGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCC--CCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            445 4677799999998 99995    246898865  699999887 45564 366666  565  456775543

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=88.64  E-value=0.35  Score=51.49  Aligned_cols=50  Identities=12%  Similarity=0.151  Sum_probs=37.4

Q ss_pred             cCCCceEEEEeccCCCCC-CCCCCc--CC--CCCCeEEEEEEcCCceEEEEEEEcC
Q 011558           28 PNGGRRVSLSGSFTRWSE-PMPMSP--SE--GCPAVFQIICRLPPGHHQYKFYVDG   78 (483)
Q Consensus        28 ~~~~~~V~l~Gsf~~W~~-~~~m~~--~~--~~~~~~~~~~~l~~g~~~ykf~vdg   78 (483)
                      ...+++|.|++.|++ +. .++|.+  ..  +..|+|++.++.......|+|.|+|
T Consensus        42 ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           42 DITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             cCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            456899999999874 32 368987  32  2347999999877667789999965

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=86.96  E-value=1.3  Score=34.89  Aligned_cols=61  Identities=15%  Similarity=0.420  Sum_probs=41.9

Q ss_pred             EEEEEecCCCceEEEEeccC--CCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEcCe--eeeCC
Q 011558           22 PVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE--WRHDE   84 (483)
Q Consensus        22 ~~~f~~~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~--w~~d~   84 (483)
                      .+++.|..+..+|+|==.+.  +|...  ++|.+. .|.|+|+.+++|+.+ .++|.| =||.  |-.+.
T Consensus        11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~   78 (102)
T 2c3v_A           11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQ   78 (102)
T ss_dssp             SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECGG
T ss_pred             EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-ccCCceEEEEecCCCceEEEEE-eCCCcccccCC
Confidence            34455556778887765565  38753  477664 358999999999975 688888 4544  87654

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=84.32  E-value=0.83  Score=51.24  Aligned_cols=63  Identities=14%  Similarity=0.264  Sum_probs=44.7

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCcCCCCCCeEEEEEEcC--Cc-----eEEEEEEEc--Ce--eeeCCCC
Q 011558           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~l~--~g-----~~~ykf~vd--g~--w~~d~~~   86 (483)
                      |+|+ |...|++|.|++ +|++|..   .++|.+..  .|+|++.++-.  +|     .+.|+|.|+  |.  ...||..
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccCC--CCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            5664 677799999999 8998864   47898743  79999888642  23     256888885  54  4577754


Q ss_pred             C
Q 011558           87 P   87 (483)
Q Consensus        87 ~   87 (483)
                      .
T Consensus       411 ~  411 (1014)
T 2ya1_A          411 K  411 (1014)
T ss_dssp             S
T ss_pred             e
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	483
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-25
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	3e-25
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-15
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-13
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-09
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	8e-09
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.002
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	4e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.001
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	6e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	4e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	6e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.004
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	7e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 97.9 bits (243), Expect = 2e-25
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
          S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78 GEWRHDENQPHVSGNYGVVNCV 99
           E R  +  P  +   G     
Sbjct: 61 NELRVSDFLPTATDQMGNFVNY 82

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 96.9 bits (241), Expect = 3e-25
 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 21  VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
            P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G HQYKF+VDG+W
Sbjct: 2   RPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEHQYKFFVDGQW 57

Query: 81  RHDENQPHVSGNYGVVNCVYIAVPQPDM 108
            HD ++P V+   G VN + I V + D 
Sbjct: 58  THDPSEPIVTSQLGTVNNI-IQVKKTDF 84

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 71.2 bits (173), Expect = 4e-15
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 206
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 207 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 321
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK I  + K ++
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILKFISMNCKETA 176

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 353 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSD-ITALAKDKAYAQIHLDEM 410
           +   T  + ++L+LL   ++ S P+   + +    + + +D +  +      +       
Sbjct: 34  VFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA 93

Query: 411 NIHQALQLG-QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE----AGSK 465
            I +   LG ++    +G              L      ++    RR+ +++     GS+
Sbjct: 94  EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSE 153

Query: 466 RVEGIISLSDVFRFL 480
            +  +++   + +F+
Sbjct: 154 MIVSVLTQYRILKFI 168

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.2 bits (158), Expect = 3e-13
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313
            SL +    +++NK+  +P+I            LY+ +   ILK +
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFL 153

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 353 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN 411
           +   +  +  A   LV   V + P+      S + + + +D   +     Y +  L ++ 
Sbjct: 27  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYKSALVQIY 84

Query: 412 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII 471
             +  ++       L  + +       +  L   +  L    + RL +++  S     I+
Sbjct: 85  ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL 144

Query: 472 SLSDVFRFL 480
           +   + +FL
Sbjct: 145 THKRILKFL 153

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 389
           P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++Y 
Sbjct: 2   PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 52

Query: 390 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERL 449
             D+  L +D  Y+ + L                     N      C  +D L  + + +
Sbjct: 53  SVDVMHLIQDGDYSNLDLSVGEALLKRP----------ANFDGVHTCRATDRLDGIFDAI 102

Query: 450 ANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482
            +  V RL +V+    ++EGI+SL+D+  +++ 
Sbjct: 103 KHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (128), Expect = 2e-09
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 385
            L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L+
Sbjct: 3   FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 53

Query: 386 DIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKV 445
           ++Y   D+  L K   Y  + L                     + +    C ++D L  +
Sbjct: 54  NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----------DDFEGVYTCTKNDKLSTI 103

Query: 446 MERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 104 MDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL 138

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 53.0 bits (126), Expect = 3e-09
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
           R    L  T +L  A  L+   D+  +PIVD N  LL I S+ D+ A  +         D
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 409 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 468
            +     L                         L +    +    +  L +V      + 
Sbjct: 70  SLAFETPLFE---------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLV 118

Query: 469 GIISLSDVFRFLL 481
           GII+ SD     +
Sbjct: 119 GIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           R         +L +    +    +  VPI+ +       +++L + S  D+L       +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA------NKKLLGIVSQRDLLAAQESSLQ 63

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
            S+    +  +               E        + P A L  +   + +  +  +P+V
Sbjct: 64  RSAQGDSLAFETPLF-----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 379 DDNDSLLDIYSRSDI 393
             +  L+ I + SD 
Sbjct: 113 AKD-VLVGIITDSDF 126

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 8e-09
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)

Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
           + + +  +Q+GT+            AM+R T  +  AL + VQ  VS++P+VD+   ++D
Sbjct: 7   MSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 57

Query: 387 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 446
           IYS+ D+  LA +K Y  + +      Q      +              C   + L  ++
Sbjct: 58  IYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK----------CYLHETLEAII 107

Query: 447 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
            RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 108 NRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +        +       +Q++V+ +P++   G       ++ + S  D++        
Sbjct: 20  ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLAAEKTY 73

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
           ++            S                         +L + +  LV+A+V  + +V
Sbjct: 74  NNLDVSVTKALQHRSHYF------------EGVLKCYLHETLEAIINRLVEAEVHRLVVV 121

Query: 379 DDNDSLLDIYSRSDI 393
           D++D +  I S SDI
Sbjct: 122 DEHDVVKGIVSLSDI 136

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI               
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 409 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 468
           E  + +                        + PL +V+ ++A   ++ ++I E G  ++ 
Sbjct: 73  ERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KIV 113

Query: 469 GIISLSDVFRFLL 481
           GI +LSD+     
Sbjct: 114 GIFTLSDLLEASR 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTER--------- 54

Query: 400 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 459
                   D       L              ++      ++     M  +    VR L +
Sbjct: 55  --------DFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 460 VEAGSKRVEGIISLSDVFRFLL 481
           ++ G  +V G++S+ D+ +  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314
           +     +V  GP DS+     K+  + +  + ++      G   E        D  +   
Sbjct: 9   QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTE-------RDFSRKSY 61

Query: 315 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 374
              K                       ++ E   R  A +    +    +AL+ +  V  
Sbjct: 62  LLDKPV------------------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRH 103

Query: 375 IPIVDDNDSLLDIYSRSDI 393
           +P++DD   ++ + S  D+
Sbjct: 104 LPVLDDGK-VIGLLSIGDL 121

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND------------SLLDIYS 389
            I     R  +++     L +AL  L+ ++  ++P+VD                  +I  
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 390 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK-VMER 448
               T LA       I      +       Q  N  +     R  +          V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 449 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
           +A   + +L ++  G   + G+I   D+ + L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-----AGSCQEILYLASLSDILKCI 313
           R +        LK     +L +    +P++ S G        +                +
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS 373
               +                +L      + E   R   +  P  ++      + +  + 
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 131

Query: 374 SIPIVDDNDSLLDIYSRSDI 393
            +P++     L+ +    D+
Sbjct: 132 QLPVIRGEGDLIGLIRDFDL 151

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
                +    +L +A   + + D+ ++PI  D+D L  + +  DI               
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 409 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 468
              + +                        +  + +++  +    VRR+ ++     R+ 
Sbjct: 69  AGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RLV 110

Query: 469 GIISLSDVFRFL 480
           GI++ +D+ R L
Sbjct: 111 GIVTEADIARHL 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 353 MLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 410
           + + + ++     ++ +   S  P+V   ++  L+    R D+    ++    Q  +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLANPGVRRLVIVEAG 463
           +I    +      P      +   +            P+  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 464 SKRVEGIISLSDVFRFL 480
             R+ GII+  DV + +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 20/137 (14%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 401
           R+ +        +  TASL   L   V+    S   V      + I              
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIV------------- 46

Query: 402 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 461
                  ++    A               +          + +  E++    V RL++ E
Sbjct: 47  ----TTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 462 AGSKRVEGIISLSDVFR 478
                + G+IS +D+ R
Sbjct: 103 DD--EIIGVISATDILR 117

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 401
           R+ +     F  +    ++  A+ ++ +  +  + + DDN + + + S   I        
Sbjct: 4   RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------- 55

Query: 402 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 461
                   +          D  P      +          +  V   L+  G+ R  +V+
Sbjct: 56  --------IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD 107

Query: 462 AGSKRVEGIISLSDVFRFLLG 482
               RV GI++L+D+ R+L  
Sbjct: 108 -DPGRVVGIVTLTDLSRYLSR 127

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAK 398
           ++G+   R    +  T++ G  L +L Q  +   P VD    N  L  I        L +
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR 71

Query: 399 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLAN 451
             +  +    E  +        +                +          L K     + 
Sbjct: 72  RISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSL 131

Query: 452 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482
            G+ R  +   G  ++ G+++L+++   + G
Sbjct: 132 LGLDRAYVTSMG--KLVGVVALAEIQAAIEG 160

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
                +   A L     ++ + ++ S+ +VD N  +  I  R  + A+ K K+      +
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEE 71

Query: 409 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 468
            M                              P+   +  +    +R L +V+     ++
Sbjct: 72  FMTAS-------------------LITIREDSPITGALALMRQFNIRHLPVVD-DKGNLK 111

Query: 469 GIISLSDVFRFL 480
           GIIS+ D+ R +
Sbjct: 112 GIISIRDITRAI 123

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 11/142 (7%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
           V  + +       ++     +   +  +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 400 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 459
             +  I  +E+       + +    +               PL + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 460 VEAGSKRVEGIISLSDVFRFLL 481
           V+     + G ++  ++   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
                      ++E+  +IL++ V     +          +++ +  +  +LK    HF 
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR------DNKLVGMIPVMHLLKVSGFHFF 65

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                  +++       +   + +           +     L  AL L++  ++  +P+V
Sbjct: 66  GFIPKEELIRS-----SMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 379 DDNDSLLDIYSRSDI-TALAKDK 400
           D+   ++   +  +I  AL K +
Sbjct: 121 DEKGEIVGDLNSLEILLALWKGR 143

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 401
           ++ +   + F M+  +A++   L  + Q   +   + D       + +        +D  
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN-------KEDLL 54

Query: 402 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 461
              +     N                            D +   +          L +V+
Sbjct: 55  DLDLDSSVFNKVS----------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVD 98

Query: 462 AGSKRVEGIISLSDVFRFLLG 482
               R++G +SL D    L+ 
Sbjct: 99  EE-MRLKGAVSLHDFLEALIE 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 321
           V   P D +++V     ++    +PI  +               +  I        K   
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRL--------VGIISSRDIDFLKEEE 58

Query: 322 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 381
               + +                        +     +L  A  +L ++    +PIV++N
Sbjct: 59  HDRFLEEIMTKR---------------EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN 103

Query: 382 DSLLDIYSRSDI 393
           D L+ I +R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEM 410
           L P   +        +     IPI D       L+ I S  DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 470
                               +   +      L +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 471 ISLSDVFR 478
           I+ +D+ +
Sbjct: 110 IARTDLKK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	483
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.94
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.92
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.88
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.83
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.82
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.8
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.79
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.78
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.78
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.78
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.76
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.76
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.75
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.74
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.73
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.71
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.7
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.68
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.67
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.67
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.67
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.67
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.66
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.66
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.66
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.66
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.65
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.65
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.65
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.64
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.64
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.64
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.63
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.63
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.62
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.62
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.61
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.59
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.59
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.59
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.59
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.58
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.58
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.5
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.48
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.44
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.92
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.89
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.86
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.71
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.64
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.48
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.51
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	92.91
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	88.67
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	82.86

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=1.6e-28  Score=192.51  Aligned_cols=86  Identities=31%  Similarity=0.639  Sum_probs=80.1

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeee
Q 011558           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (483)
Q Consensus        19 ~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn   98 (483)
                      -+|||+|+|+++|++|+|+||||||++..+|.+....+|.|+++++|+||.|+|||+|||+|++||.+|++.|++|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            46999999999999999999999999987777766568999999999999999999999999999999999999999999


Q ss_pred             EEEeccC
Q 011558           99 VYIAVPQ  105 (483)
Q Consensus        99 ~~~v~~~  105 (483)
                      +|.| ++
T Consensus        82 vi~V-~~   87 (87)
T d2qlvb1          82 YIEV-RQ   87 (87)
T ss_dssp             EEEE-CC
T ss_pred             EEEE-EC
Confidence            9999 53

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=1.7e-27  Score=185.98  Aligned_cols=84  Identities=45%  Similarity=0.896  Sum_probs=77.6

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeeeE
Q 011558           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (483)
Q Consensus        20 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~   99 (483)
                      +.||+|+|+++|++|+|+||||||++ .+|.+.   +|.|++++.||||.|+|||+|||+|++|+++|++.|+.|+.||+
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~---~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnv   76 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI   76 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccC---CCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEE
Confidence            47999999999999999999999986 567654   68999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCC
Q 011558          100 YIAVPQPDM  108 (483)
Q Consensus       100 ~~v~~~~~~  108 (483)
                      |.| ++.|.
T Consensus        77 i~V-~~~D~   84 (87)
T d1z0na1          77 IQV-KKTDF   84 (87)
T ss_dssp             EEE-CSCTT
T ss_pred             EEE-CCCcc
Confidence            999 87654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.92  E-value=5.3e-25  Score=197.34  Aligned_cols=168  Identities=23%  Similarity=0.419  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccC
Q 011558          141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN  220 (483)
Q Consensus       141 ~~~~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~  220 (483)
                      ...+.+.+++||+.++|||+||.|+++|+++.+.||.+|++.|.++++.++||||+++++++|++|..|++.++......
T Consensus         6 ~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~   85 (179)
T d2ooxe1           6 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS   85 (179)
T ss_dssp             HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccc
Confidence            35578999999999999999999999999999999999999999999999999999888999999999999988665432


Q ss_pred             CC-CCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcce
Q 011558          221 GS-NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  299 (483)
Q Consensus       221 ~~-~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~  299 (483)
                      .. .....+........+........          .+.++++++.++++|.+|+.+|.+++++++||+|++...+ ..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~  154 (179)
T d2ooxe1          86 SSFPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEM  154 (179)
T ss_dssp             CSCGGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEE
T ss_pred             ccchhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCc
Confidence            21 11122333334444443333221          4678999999999999999999999999999997633221 238


Q ss_pred             EEEEechhhHHHHHHhhccC
Q 011558          300 ILYLASLSDILKCICRHFKH  319 (483)
Q Consensus       300 l~Giit~~dIl~~l~~~~~~  319 (483)
                      ++|++|++||+++++.++++
T Consensus       155 vvgiiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         155 IVSVLTQYRILKFISMNCKE  174 (179)
T ss_dssp             EEEEEEHHHHHHHHHTTCGG
T ss_pred             EEEEEeHHHHHHHHHHhhhH
Confidence            99999999999999987765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=7.6e-23  Score=179.42  Aligned_cols=153  Identities=35%  Similarity=0.595  Sum_probs=123.9

Q ss_pred             HHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCH
Q 011558          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (483)
Q Consensus       147 ~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~  226 (483)
                      .|.+||+.+|+||+||.+.++|+++.+.|+.+|++.|.++++.++||+|.+.++++|++|..|++.++....... ....
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~-~~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA-LVQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH-TTTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccc-cchh
Confidence            578999999999999999999999999999999999999999999999988889999999999998876543211 0001


Q ss_pred             HHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEech
Q 011558          227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (483)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~  306 (483)
                      ..........+......            .+.++++++++++++.+|+++|.+++++++||+|  .++|   +++|+||+
T Consensus        84 ~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd--~~~g---~~~GivT~  146 (159)
T d2v8qe2          84 YELEEHKIETWREVYLQ------------DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLYILTH  146 (159)
T ss_dssp             CCGGGCBHHHHHHHHSS------------SSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEEEECH
T ss_pred             hhhhhhhcccccceeee------------eeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE--CCCC---eEEEEEeH
Confidence            11222233333322221            4578899999999999999999999999999994  3456   89999999


Q ss_pred             hhHHHHHHhhc
Q 011558          307 SDILKCICRHF  317 (483)
Q Consensus       307 ~dIl~~l~~~~  317 (483)
                      +||++++..+.
T Consensus       147 ~dilk~l~~~~  157 (159)
T d2v8qe2         147 KRILKFLKLFI  157 (159)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHc
Confidence            99999997654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.83  E-value=7.1e-20  Score=159.19  Aligned_cols=133  Identities=25%  Similarity=0.568  Sum_probs=115.1

Q ss_pred             ccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCC
Q 011558          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE  409 (483)
Q Consensus       330 ~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~  409 (483)
                      |++++.+|+|.         +++++.+++++.+|+++|.+++++++||+|++|+++|+++..|+++..........   +
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~---~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---D   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGG---G
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccccc---c
Confidence            67778888885         68999999999999999999999999999999999999999999987765443333   4


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          410 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       410 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .++.+++....       .+..++++|.+++++.++++.|.+++++++|||| ++|+++|+||++||++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            67888775432       4455788999999999999999999999999999 58999999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=9.5e-20  Score=155.93  Aligned_cols=136  Identities=25%  Similarity=0.504  Sum_probs=108.4

Q ss_pred             ccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc
Q 011558          326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  405 (483)
Q Consensus       326 ~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~  405 (483)
                      ++..++++++++++         .++.++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++..........
T Consensus         3 ~~~~~i~~l~~~~~---------~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~   73 (140)
T d2nyca1           3 FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL   73 (140)
T ss_dssp             GGGSBGGGSSCCBC---------SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             cccCcHHHhCCccC---------CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc
Confidence            45678888866555         479999999999999999999999999999999999999999999997764433222


Q ss_pred             ccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          406 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       406 ~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                         ...+.+.+....       .+..++++|.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++|+
T Consensus        74 ---~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          74 ---SLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---CSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---ccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe-CCCeEEEEEEHHHHHHHHh
Confidence               234455443322       3345678999999999999999999999999999 5899999999999999986

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.81  E-value=9.2e-20  Score=155.83  Aligned_cols=126  Identities=21%  Similarity=0.234  Sum_probs=107.2

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc----ccCCccHHHHHh
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI----HLDEMNIHQALQ  417 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~----~l~~~~v~~~l~  417 (483)
                      +++|+|.+++.++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++..........    ...+.++.+   
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   79 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH---
Confidence            5778899999999999999999999999999999999999999999999999986654322111    111234444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                                +|.+++++|++++++.+|+++|.+++++++||+|  +|+++|+||++||++++..
T Consensus        80 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHHH
T ss_pred             ----------hhccccccccccchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence                      7888999999999999999999999999999999  3899999999999999864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=3.9e-20  Score=154.69  Aligned_cols=121  Identities=16%  Similarity=0.290  Sum_probs=103.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++|+|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++.........   .....+++       
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~---~~~~~v~~-------   71 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD---PNTATAGE-------   71 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC---TTTSBHHH-------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCC---cccceEEE-------
Confidence            46778999999999999999999999999999999999999999999999997633222111   11345555       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                            +|..++++|.+++++.+|+++|.+++++++||+|  +|+++|+||.+||+++|
T Consensus        72 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 ------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             ------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             ------EeeccceeeeecchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHhhC
Confidence                  5666889999999999999999999999999999  38999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.6e-19  Score=155.44  Aligned_cols=138  Identities=33%  Similarity=0.586  Sum_probs=115.5

Q ss_pred             cccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc
Q 011558          325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ  404 (483)
Q Consensus       325 ~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~  404 (483)
                      .++.++++++.++++.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++.+.......
T Consensus         5 ~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~   75 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN   75 (145)
T ss_dssp             GGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCC
T ss_pred             HHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccc
Confidence            4456778888777653         6889999999999999999999999999999999999999999988665443322


Q ss_pred             cccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          405 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       405 ~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .   +.++.+......       .|..++++|.+++++.+++++|.+++++++||+| ++|+++|+||.+||+++|+.
T Consensus        76 ~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          76 L---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             C---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             h---hhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence            2   356666544322       5666788999999999999999999999999999 58999999999999999974

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=4.4e-20  Score=160.99  Aligned_cols=139  Identities=18%  Similarity=0.255  Sum_probs=105.3

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc-cCCcc----HHH--
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-LDEMN----IHQ--  414 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~-l~~~~----v~~--  414 (483)
                      ++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++............ .....    ...  
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            56677999999999999999999999999999999999999999999999997643322111100 00000    000  


Q ss_pred             ---HHh--cCCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          415 ---ALQ--LGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       415 ---~l~--~~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                         ...  .......+. ++|.+++++|.+++++.++++.|.+++++++||+| ++|+++||||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe-CCCEEEEEEEHHHHHHHhC
Confidence               000  001122233 38888999999999999999999999999999999 5899999999999999885

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=2.6e-19  Score=153.50  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=106.0

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +|+++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++........   ..+.++++       
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~---~~~~~v~~-------   73 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---PDEVPIRL-------   73 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---GGGSBGGG-------
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccc---cccccccc-------
Confidence            57788999999999999999999999999999999999999999999999998744321111   11234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|.+++++|.+++++.+|+++|.+++++++|||| ++|+++|+||..||++++.
T Consensus        74 ------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          74 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccchhhHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHHHHh
Confidence                  7878899999999999999999999999999999 5799999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.78  E-value=4.8e-19  Score=148.82  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=105.9

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      .|+++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+++..|+++....+...     +.++.+       
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccc-----cchhhh-------
Confidence            56778999999999999999999999999999999998 58999999999999876643321     234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|.+++++|.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++..
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhccccccccchhHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence                  6667889999999999999999999999999999 58999999999999999853

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=8e-19  Score=145.94  Aligned_cols=120  Identities=19%  Similarity=0.245  Sum_probs=105.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +|+++|++++.++.+++++.+|++.|.+++++.+||++ +|+++|++|.+||++.+..+..    +.+.++.+       
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~-------   68 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   68 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEee-------
Confidence            36788999999999999999999999999999999997 5899999999999986654322    22456776       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                            +|.+++.++++++++.+|+++|.+++++++||+|  +|+++|+||.+||+++.+
T Consensus        69 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          69 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAKM  120 (120)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHC
T ss_pred             ------ecccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcCC
Confidence                  6677899999999999999999999999999987  589999999999999863

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.2e-18  Score=147.50  Aligned_cols=122  Identities=19%  Similarity=0.349  Sum_probs=105.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      .|+++|+++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++....+...    .+.++++       
T Consensus         6 pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~v~~-------   74 (132)
T d2yzia1           6 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP----YDIPVER-------   74 (132)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC----TTSBGGG-------
T ss_pred             cHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCc----cceeEee-------
Confidence            35666999999999999999999999999999999999999999999999998754422111    1244554       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|.+++.++.+++++.+|++.|.+++++++||++  +|+++|+||.+||++++..
T Consensus        75 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          75 ------IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             ------TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ------cccccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence                  7777899999999999999999999999999887  5999999999999998753

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=1.4e-19  Score=151.13  Aligned_cols=117  Identities=21%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.++++++++++++.+|+++|.+++++++||+|++|+++|++|.+|++.....          ..+.+       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~----------~~~~~-------   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE----------EQLAM-------   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C-------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcc----------cchhh-------
Confidence            4567799999999999999999999999999999999999999999999998753221          12222       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|.+++++|.+++++.+|+++|.+++++++|||| ++|+++|+||++||+++++.
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 ------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTT
T ss_pred             ------ccccceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHHHHHh
Confidence                  6777899999999999999999999999999999 58999999999999998764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.76  E-value=1.2e-18  Score=146.41  Aligned_cols=115  Identities=12%  Similarity=0.271  Sum_probs=97.9

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  428 (483)
Q Consensus       349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  428 (483)
                      ++++++.+++++.+|+++|.+++++++||++ +|+++|++|.+|+++........   ..+.++.+             +
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~---~~~~~v~~-------------i   75 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP---VKDTQVKE-------------I   75 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC---GGGSBGGG-------------T
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhccc---ccceeEee-------------e
Confidence            4789999999999999999999999999998 78999999999998744321111   11234444             7


Q ss_pred             CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      |.+++++|.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++++
T Consensus        76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ccceeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHHhC
Confidence            778899999999999999999999999999999  4899999999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=3e-18  Score=143.67  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=95.7

Q ss_pred             cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCC
Q 011558          347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  424 (483)
Q Consensus       347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~  424 (483)
                      |..+++++.+++++.+|+++|.+++++++||+|+  +|+++|++|.+|+.......         .....          
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~----------   63 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISE----------   63 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTT----------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceee----------
Confidence            4456789999999999999999999999999996  78999999999997643211         11111          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                        .+|..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++++.
T Consensus        64 --~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          64 --HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --eeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence              14566788999999999999999999999999999 5899999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.2e-18  Score=146.21  Aligned_cols=115  Identities=16%  Similarity=0.261  Sum_probs=102.0

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  416 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l  416 (483)
                      +++.+|.++++++++++++.+|++.|.++     +++.+||+|++|+++|+++.+++....          .+.++.+  
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~----------~~~~v~~--   69 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD--   69 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH--
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc----------ccEEhhh--
Confidence            46678999999999999999999999876     478999999999999999999886421          1356676  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                                 +|.++++++.+++++.+|+++|.+++++++|||| ++|+++|+||..||++++
T Consensus        70 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD-~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          70 -----------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             -----------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHH
T ss_pred             -----------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe-CCCEEEEEEEHHHHHHHH
Confidence                       7778899999999999999999999999999999 589999999999999986

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.6e-18  Score=146.65  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             cccccc--CCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-ccccCCccHHHHHhc
Q 011558          342 RIGEAN--GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIHLDEMNIHQALQL  418 (483)
Q Consensus       342 ~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~-~~~l~~~~v~~~l~~  418 (483)
                      +++++|  ..+++++.+++++.+|+++|.+++++++||+|++|+++|+++.+|+++........ .....+.++++    
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~----   78 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   78 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccc----
Confidence            345557  45789999999999999999999999999999999999999999999866532221 12223456666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                               +|.+++.++.+++++.+++++|.+++  .+|||| ++|+++|+||.+||++++..
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd-~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          79 ---------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN-DEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------cccccccccccchhHHHHHHHHHhCC--EEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence                     56668899999999999999998765  599999 58999999999999999853

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=1.2e-18  Score=148.99  Aligned_cols=127  Identities=11%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc--ccccCCccHHHHHhcC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLG  419 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~--~~~l~~~~v~~~l~~~  419 (483)
                      .|+++|++++.++++++++.+|+++|.+++++++||+|++++++|+++..|+++........  .......++++     
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~-----   77 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD-----   77 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH-----
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHH-----
Confidence            35667999999999999999999999999999999999999999999999998865422111  11111344555     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                              +|.++++++.+++++.+|++.|.+++++++|||| ++|+++|+||++||++++.+
T Consensus        78 --------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd-~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          78 --------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             --------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             --------HhCcccccccccchhhHHHHHHHHcCCCEEEEEc-cCCEEEEEEEHHHHHHHHHH
Confidence                    6777899999999999999999999999999999 58999999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.9e-18  Score=143.84  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=103.0

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +++++|.++++++.+++++.+|+++|.+.+.+++||+|++|+++|+++..|++++..          +.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----------~~~v~~-------   64 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN-------   64 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG-------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----------cccccc-------
Confidence            356779999999999999999999999999999999999999999999999975311          123333       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                            +|..+++++++++++.+++++|.+++..++|||| ++|+++|+||..||++++..
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-e~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          65 ------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ------cccCccEEECCCCCHHHHHHHHHhcCceeeeeEC-CCCeEEEEEEHHHHHHHHHH
Confidence                  5666788999999999999999999999999999 58999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.8e-18  Score=147.45  Aligned_cols=135  Identities=8%  Similarity=0.152  Sum_probs=103.1

Q ss_pred             cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558          343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  422 (483)
Q Consensus       343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~  422 (483)
                      +.++|..+++++.+++++.+|++.|.+++++++||+|++|+++|++|..||++............... ....+  ....
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~-~~~~~--~~~~   82 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEEL-IRSSM--KRLI   82 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC--------CC--CCCS
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHH-HHhhh--hhcc
Confidence            45668999999999999999999999999999999999999999999999998665333221110000 00000  0000


Q ss_pred             CCCcc-cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          423 NPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       423 ~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ..+++ +| .+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++|..
T Consensus        83 ~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd-~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          83 AKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             SCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence            11111 33 3567899999999999999999999999999 58999999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.74  E-value=1.3e-17  Score=145.50  Aligned_cols=142  Identities=16%  Similarity=0.247  Sum_probs=107.9

Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhcccccc--cccC-CccHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQ--IHLD-EMNIH  413 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~di~~l~~~~~~~~--~~l~-~~~v~  413 (483)
                      +.-+|+++|.++++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++.++.......  .... .....
T Consensus         9 ~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3           9 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             cceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccc
Confidence            344788889999999999999999999999999999999984  478999999999998665321110  0000 01111


Q ss_pred             HHH----hcCCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          414 QAL----QLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       414 ~~l----~~~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      ...    .......... .+|.++++++.+++++.+|+++|.+++++++||+|  +|+++||||++||++++-|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhCC
Confidence            111    1111111111 27888899999999999999999999999999998  4999999999999999865

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=9e-19  Score=150.44  Aligned_cols=116  Identities=18%  Similarity=0.272  Sum_probs=101.1

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  416 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l  416 (483)
                      +++.+|+++++++.+++++.+|+++|.+++     ++.+||+|++|+++|+++.+|+.....          +.++.+  
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~----------~~~v~~--   69 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP----------RTRVAE--   69 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT----------TCBSTT--
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc----------ccchHH--
Confidence            467889999999999999999999998764     788999999999999999999864211          122232  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558          417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  481 (483)
Q Consensus       417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~  481 (483)
                                 +|.++++++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||++++.
T Consensus        70 -----------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd-~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          70 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             -----------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC-SSCBEEEEEEHHHHHHHHH
T ss_pred             -----------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEe-ECCEEEEEEEHHHHHHHHH
Confidence                       7778899999999999999999999999999999 5799999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=1e-17  Score=141.24  Aligned_cols=119  Identities=20%  Similarity=0.240  Sum_probs=101.4

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  419 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~  419 (483)
                      +|+++|.++++++++++++.+|++.|.+++++++||+  |++++++|+++..|+++....+.....     ...      
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~-----~~~------   70 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG-----PAM------   70 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTS-----BSG------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccc-----ccc------
Confidence            5778899999999999999999999999999999999  556899999999999987654322211     111      


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                              .+..++.++.+++++.+|+++|.+++++++|||| ++|+++|+||+.||++++
T Consensus        71 --------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          71 --------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             --------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCH
T ss_pred             --------cccccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHH
Confidence                    2334678999999999999999999999999999 589999999999999765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.4e-17  Score=143.80  Aligned_cols=135  Identities=15%  Similarity=0.193  Sum_probs=102.9

Q ss_pred             ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccccccc-cc---CCccHHH
Q 011558          342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQI-HL---DEMNIHQ  414 (483)
Q Consensus       342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~~~-~l---~~~~v~~  414 (483)
                      ++.|+|.  .+++++..++++.+|+++|.+++++++||+|+ +++++|+++..|++........... ..   .......
T Consensus        14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (159)
T d2v8qe2          14 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIET   93 (159)
T ss_dssp             BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHH
T ss_pred             EEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhccc
Confidence            3455574  35789999999999999999999999999974 6899999999999986653211110 00   0011111


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          415 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       415 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .....      .++|..++++|++++++.+|+++|.++++|++||+|+++|+++||||.+||+++|..
T Consensus        94 ~~~~~------~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          94 WREVY------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHHH------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             cccee------eeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            10000      016777899999999999999999999999999998667899999999999999853

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=8.5e-18  Score=142.56  Aligned_cols=130  Identities=9%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  421 (483)
Q Consensus       342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~  421 (483)
                      +|+++|.++++++.+++++.+|+++|.+++++++||+|+  +++|+++..|+++...........   ......+..   
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---   73 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCS---QGDLYHIST---   73 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CC---HHHHHHHHT---
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchh---hhhcccccc---
Confidence            467779999999999999999999999999999999974  799999999999865432221110   001111110   


Q ss_pred             CCCCcc-cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          422 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       422 ~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                        .+.+ +|..++++|.+++++.+|+++|.+++++++||+| ++|+++|+||++||++++..
T Consensus        74 --~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          74 --TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             --SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGG
T ss_pred             --CCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe-CCCEEEEEEEHHHHHHHHHH
Confidence              1222 7888999999999999999999999999999999 58999999999999998754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.68  E-value=9.2e-17  Score=134.63  Aligned_cols=116  Identities=22%  Similarity=0.310  Sum_probs=101.2

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++++.+|+++|.+++++++||+++    +   +++|++|..|+++++.....        ...+     
T Consensus         9 ~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~----~---~~~Givt~~dl~~~~~~~~~--------~~~~-----   68 (127)
T d2ef7a1           9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LETK-----   68 (127)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTCB-----
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc----c---chhhhcchhHHHHHHHhhcc--------ccch-----
Confidence            67889999999999999999999999999999953    4   79999999999998764321        1223     


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                             +.++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..||++.+.
T Consensus        69 -------v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          69 -------AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             -------GGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -------hhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence                   34448888999999999999999999999999999999999999999999998765

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=6.7e-17  Score=140.42  Aligned_cols=136  Identities=13%  Similarity=0.173  Sum_probs=102.7

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCC------ccc-
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------PIL-  327 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~------~~~-  327 (483)
                      .+|.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..|+++.+...........      ... 
T Consensus         8 ~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d2yzqa1           8 PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWIL   81 (156)
T ss_dssp             TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC-----------------
T ss_pred             HHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhhhh
Confidence            367899999999999999999999999999999954   45   89999999999876643211100000      000 


Q ss_pred             ----ccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          328 ----QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       328 ----~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                          ...............+.++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|++||+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          82 ESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ---------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                000111111122346788899999999999999999999999999999999999999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.67  E-value=5.1e-17  Score=136.21  Aligned_cols=116  Identities=15%  Similarity=0.198  Sum_probs=99.5

Q ss_pred             CCCCCCCCeEEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccc
Q 011558          253 NGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL  327 (483)
Q Consensus       253 ~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~  327 (483)
                      +|.+|.++++++++++|+.+|++.|.++     .++.+||+|+   ++   +++|+++.++++..-             .
T Consensus         3 aG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~~~-------------~   63 (127)
T d2ouxa2           3 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVND-------------D   63 (127)
T ss_dssp             HHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTSC-------------T
T ss_pred             hhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeecccccc-------------c
Confidence            4567899999999999999999999876     4789999965   45   899999998875310             1


Q ss_pred             ccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       328 ~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                      ..            +++++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+||+.++.+
T Consensus        64 ~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          64 DT------------LIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             TS------------BHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cE------------EhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            22            3455699999999999999999999999999999999999999999999999997764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=3.4e-16  Score=134.10  Aligned_cols=133  Identities=13%  Similarity=0.180  Sum_probs=101.9

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      ++...++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+||++++....................+ 
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL-   81 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC-
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhc-
Confidence            56788899999999999999999999999999965   45   899999999999988654332111111111111111 


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                         ....+.++|. +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus        82 ---~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          82 ---IAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             ---SSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ---cccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence               1123444454 45689999999999999999999999999999999999999999997654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=2.1e-16  Score=140.54  Aligned_cols=137  Identities=12%  Similarity=0.197  Sum_probs=101.5

Q ss_pred             cccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccc-cccc-----ccCCccHH
Q 011558          343 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQI-----HLDEMNIH  413 (483)
Q Consensus       343 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~-~~~~-----~l~~~~v~  413 (483)
                      +.|+|.  .+++++++++++.+|++.|.+++++++||+|. +++++|++|..|+++.+.... ....     .+......
T Consensus        22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (179)
T d2ooxe1          22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLL  101 (179)
T ss_dssp             HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHH
T ss_pred             eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchh
Confidence            344565  46899999999999999999999999999984 689999999999998554211 1000     00011111


Q ss_pred             HHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCC----CCeEEEEEehHHHHHHHhcC
Q 011558          414 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG----SKRVEGIISLSDVFRFLLGV  483 (483)
Q Consensus       414 ~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~----~~~l~GiIs~~DIl~~l~~~  483 (483)
                      .......    ..+.|.+++++|.++++|.+|+++|.++++|++||+|++    +++++|+||.+||+++|..+
T Consensus       102 ~~~~~~~----~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         102 GLREVER----KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHHHHH----HTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             hhcccce----eeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            1000000    012677889999999999999999999999999999842    24799999999999999754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.66  E-value=4e-18  Score=141.61  Aligned_cols=115  Identities=18%  Similarity=0.199  Sum_probs=60.6

Q ss_pred             cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCC
Q 011558          347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  423 (483)
Q Consensus       347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~  423 (483)
                      |.++++++.+++++.+|+++|.+++++++||+|+   +++++|++|.+|+........       +.++.+.        
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~-------~~~~~~~--------   66 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-------DRFLEEI--------   66 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----------------------------C--------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcccc-------CceeEEE--------
Confidence            3456678999999999999999999999999985   679999999999864332211       1122220        


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558          424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  480 (483)
Q Consensus       424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l  480 (483)
                         ..+..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++..
T Consensus        67 ---~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd-~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          67 ---MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVN-ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ---CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE-TTTEEEEEECHHHHHHHH
T ss_pred             ---EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEc-CCCEEEEEEEHHHhhhcc
Confidence               03345688999999999999999999999999999 589999999999999863

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=8.1e-17  Score=138.02  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=101.6

Q ss_pred             CCCCCCCCCCeEEeCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCc
Q 011558          251 DGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP  325 (483)
Q Consensus       251 d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~-----~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~  325 (483)
                      |.+|.+|.++++++++++|+.+|++.|.+++     ++.+||+|+   +|   +++|+++.+||++..            
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~dl~~~~------------   62 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD------------   62 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TC---BBCCBCBHHHHTTSC------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CC---CEecccchhhhhhcc------------
Confidence            3567899999999999999999999998774     788999965   56   899999999986421            


Q ss_pred             ccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       326 ~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                       ...            .+.++|.+++.++.+++++.+|+++|.+++++++||||++|+++|+||.+||++++.+
T Consensus        63 -~~~------------~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          63 -PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             -TTC------------BSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             -ccc------------chHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence             112            3445599999999999999999999999999999999999999999999999987654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.66  E-value=2.3e-16  Score=134.31  Aligned_cols=125  Identities=18%  Similarity=0.246  Sum_probs=102.1

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++............        . 
T Consensus         7 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~~~~--------~-   71 (139)
T d2o16a3           7 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQGDS--------L-   71 (139)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred             hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhcccc--------c-
Confidence            46788999999999999999999999999999964   45   899999999999988665432110000        0 


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                        .....++++|.+++.++++++++.+|+++|.+++++++||+| +|+++|++|++||++.+.
T Consensus        72 --~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          72 --AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ---CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred             --ccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence              111245666999999999999999999999999999999998 589999999999998665

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=5e-16  Score=129.87  Aligned_cols=113  Identities=14%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ..++++.|++|+.+|+++|.+++++++||+|+ ..++   +++|++|.+||++.....            .+.       
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~~------------~~~-------   61 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDYN------------API-------   61 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCSS------------SBT-------
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhccC------------Cce-------
Confidence            45679999999999999999999999999953 2345   899999999987643211            111       


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                          ....|..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++...
T Consensus        62 ----~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 ----SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ----TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ----eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                11235677889999999999999999999999999999999999999999999765

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.65  E-value=2.1e-16  Score=135.07  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=101.5

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++++.+|++.|.+++++++||+++   +|   +++|++|.+|+++.+......      ....      
T Consensus         8 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~------~~~~------   69 (142)
T d1pvma4           8 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------PDEV------   69 (142)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------GGGS------
T ss_pred             hCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc------cccc------
Confidence            57788999999999999999999999999999954   45   899999999998876532211      1112      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            .++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..||++.+.
T Consensus        70 ------~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          70 ------PIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------BGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence                  345568899999999999999999999999999999999999999999999988543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.2e-16  Score=133.10  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=97.7

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|.+||++.+......                
T Consensus         6 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~----------------   63 (123)
T d1y5ha3           6 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD----------------   63 (123)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC----------------
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCC----------------
Confidence            35678899999999999999999999999999965   45   899999999998765433211                


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                        .....++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|++|++||++.
T Consensus        64 --~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          64 --PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             --TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             --cccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence              011134556889999999999999999999999999999998 5899999999999874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=6.3e-16  Score=130.35  Aligned_cols=118  Identities=16%  Similarity=0.263  Sum_probs=100.8

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..||++.+.....       ....      
T Consensus        10 im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~-------~~~~------   70 (132)
T d2yzia1          10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYDI------   70 (132)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTTS------
T ss_pred             HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccC-------ccce------
Confidence            57889999999999999999999999999999965   45   89999999999987653211       1122      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                            .++++|.+++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++...+
T Consensus        71 ------~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          71 ------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             ------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ------eEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                  34555889999999999999999999999999999876 7999999999999997654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=4e-16  Score=132.97  Aligned_cols=125  Identities=18%  Similarity=0.183  Sum_probs=96.1

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  334 (483)
                      ..+.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..|+++++.......      +...+...
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~~~~~~~~~------~~~~~~~~   80 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYND------LSLSVGEA   80 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSBHHHH
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHHHhhccccc------cccchhhh
Confidence            356788999999999999999999999999999954   45   8999999999999986543321      11111111


Q ss_pred             cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                      -      .....+..++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+
T Consensus        81 ~------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          81 L------MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             H------HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             h------hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            0      11223556788999999999999999999999999999999999999999999854

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=1.7e-16  Score=133.82  Aligned_cols=119  Identities=9%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      ..+++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..||++++........  ...           
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~---~~vGiit~~di~~~~~~~~~~~~--~~~-----------   71 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERIEF--EKL-----------   71 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSBCG--GGT-----------
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---cc---ccccEEEcchhHHHhhccccccc--ccc-----------
Confidence            567899999999999999999999999999954   45   89999999999998865432210  011           


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                       ...+++++|.+++.++.+++++.+++++|.+++  .+||+|++|+++|+||++|+++.+.
T Consensus        72 -~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          72 -DQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             -TTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -ccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHH
Confidence             112455669999999999999999999997764  5999999999999999999998664

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.64  E-value=1e-15  Score=128.13  Aligned_cols=113  Identities=17%  Similarity=0.282  Sum_probs=96.0

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      ++++++.+++++.+|+++|.+++++++||+++    +   +++|++|.+||++.+......      ....         
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~----~---~~vGiit~~Di~~~~~~~~~~------~~~~---------   70 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDKP------VKDT---------   70 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSSC------GGGS---------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEccchhhhhhhhccc------ccce---------
Confidence            57899999999999999999999999999953    4   899999999998876432111      1122         


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                         .+.++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++..
T Consensus        71 ---~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          71 ---QVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ---BGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---eEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence               34556999999999999999999999999999999998 69999999999999843

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=3.1e-16  Score=133.75  Aligned_cols=124  Identities=10%  Similarity=0.162  Sum_probs=103.1

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++|+.+|+++|.+++++++||++.   ++   +++|++|..|+++++......... .....       
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~-------   72 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYG-------   72 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHT-------
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccC-------
Confidence            36778999999999999999999999999999954   44   799999999999988654322100 01111       


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                           ..++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.+.
T Consensus        73 -----~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          73 -----KVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             -----CBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -----CCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence                 2455669999999999999999999999999999999999999999999999998665

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=2e-16  Score=133.96  Aligned_cols=126  Identities=18%  Similarity=0.128  Sum_probs=101.8

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++.+++++.+|++.|.+++++++||+++        +++|+++..++++++........         .....
T Consensus         6 lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--------~lvg~~~~~~~~~~~~~~~~~~~---------~~~~~   68 (135)
T d3ddja2           6 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCKDSC---------SQGDL   68 (135)
T ss_dssp             TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--------SEEEEEEHHHHHGGGTTCC---C---------CHHHH
T ss_pred             EeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--------ceeceeeccchhhhhccccccch---------hhhhc
Confidence            46677889999999999999999999999999943        69999999999988754322110         00000


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                      ......+++++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++++.
T Consensus        69 ~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          69 YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             cccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            011223567779999999999999999999999999999999999999999999999998665

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.9e-16  Score=135.85  Aligned_cols=129  Identities=15%  Similarity=0.219  Sum_probs=94.1

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc------CCCCC
Q 011558          352 AMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL------GQDAN  423 (483)
Q Consensus       352 ~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~------~~~~~  423 (483)
                      +.+.+++++.+|.++|.+++++++||+  +++++++|++|.+||+.++.................+...      .....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            446778899999999999999999999  4578999999999999866432111110000000000000      00000


Q ss_pred             CCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558          424 PSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  482 (483)
Q Consensus       424 ~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~  482 (483)
                      .+. ++|.+++++|.+++++.+++++|.+++++++||+|  +|+++|+||++||++++..
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            111 27888899999999999999999999999999988  5899999999999999854

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=1.1e-15  Score=126.60  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=98.1

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++|+.+|++.|.+++++.+||.++    |   +++|++|.+||++++......       ...      
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~----~---~~~Gvit~~Di~~~l~~~~~~-------~~~------   64 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDDL-------AEV------   64 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCCT-------TTS------
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC----C---cEEEEEEeeeccccccccccc-------cce------
Confidence            46789999999999999999999999999999853    4   899999999999988653211       122      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                            .+.++|.+++.++++++++.+|+++|.+++++++||++ +|+++|++|.+|++++
T Consensus        65 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          65 ------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ------BHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ------eEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                  34455889999999999999999999999999999987 6899999999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=2.1e-15  Score=125.10  Aligned_cols=112  Identities=14%  Similarity=0.152  Sum_probs=97.9

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.+++.++.+++|+.+|+++|.+++.+++||+++   +|   +++|+++..|++++.             ...      
T Consensus         6 ~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~---~~~Gii~~~dl~~~~-------------~~~------   60 (121)
T d1vr9a3           6 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LDS------   60 (121)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TTS------
T ss_pred             hhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC---Cc---eeEEEeehhhhhhhh-------------ccc------
Confidence            56788999999999999999999999999999954   45   899999999987531             112      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                            ++.++|..++.++++++++.+++++|.+++...+||+|++|+++|++|..|+++.+.
T Consensus        61 ------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          61 ------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             ------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ------cccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence                  344558888899999999999999999999999999999999999999999998665

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=7.5e-16  Score=128.00  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (483)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (483)
                      |.++++++++++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++...             ..       
T Consensus         7 M~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~~-------------~~-------   60 (122)
T d2yzqa2           7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------EE-------   60 (122)
T ss_dssp             SEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC---------------------------
T ss_pred             cCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhhc-------------cc-------
Confidence            5667889999999999999999999999999954   56   8999999999875321             11       


Q ss_pred             cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (483)
Q Consensus       337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~  397 (483)
                           .+.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|++||++..
T Consensus        61 -----~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          61 -----QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             --------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             -----chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                 23445888999999999999999999999999999999999999999999998743

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.59  E-value=4.3e-15  Score=129.10  Aligned_cols=139  Identities=10%  Similarity=0.054  Sum_probs=105.8

Q ss_pred             CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCC-cccccc--c
Q 011558          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQQP--V  331 (483)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~-~~~~~~--v  331 (483)
                      .+|.++++++.+++++.+|+++|.+++++++||+++ .+++   .++|+++..|+++.+........... ......  .
T Consensus        15 diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   90 (160)
T d2d4za3          15 DIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEI   90 (160)
T ss_dssp             SSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHH
T ss_pred             HhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccccchhhccccchh
Confidence            368899999999999999999999999999999964 2344   79999999999998876432211000 000000  0


Q ss_pred             ---ccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          332 ---SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       332 ---~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                         ...........+.++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          91 YRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence               000011122345678999999999999999999999999999999998 699999999999998653

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.59  E-value=4.6e-17  Score=135.07  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (483)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (483)
                      .+++++.|++++.+|+++|.+++++++||++++...+   +++|++|.+|+.......          +..++...    
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~----   66 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI----   66 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C----
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE----
Confidence            4457899999999999999999999999996433345   899999999985432211          11222222    


Q ss_pred             cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                            ..+.++++++.+++++.+|+++|.+++++++||+|++|+++|+||+.||++.
T Consensus        67 ------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 ------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                  1145578899999999999999999999999999999999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.59  E-value=2.9e-15  Score=125.91  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=97.0

Q ss_pred             CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (483)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  335 (483)
                      +|.++++++++++|+.+|++.|.+++++++||++.+. .+   +++|+++..|+++++.......        .      
T Consensus         6 im~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~~--------~------   67 (131)
T d2riha1           6 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDLD--------G------   67 (131)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCTT--------S------
T ss_pred             hccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeeccccccccccccc--------c------
Confidence            5788999999999999999999999999999995422 33   8999999999999876542210        1      


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l  396 (483)
                             ....+..++.++.+++++.+|+++|.+++++++||+|++|+++|++|..||++.
T Consensus        68 -------~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          68 -------PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             -------BSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             -------ccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                   111244567789999999999999999999999999999999999999999873

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.5e-15  Score=127.06  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=99.7

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      .++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..||++++......      ....++.+.   
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~---   83 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA---   83 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH---
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhc---
Confidence            356889999999999999999999999999954   55   899999999999877543211      112222221   


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                         ......|..++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++.+.
T Consensus        84 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ---LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               1233447778899999999999999999999999999999999999999999998553

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.58  E-value=6.1e-15  Score=127.46  Aligned_cols=123  Identities=22%  Similarity=0.201  Sum_probs=99.8

Q ss_pred             CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (483)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (483)
                      .++++++.+++++.+|+++|.+++++++||+++   +|   +++|++|.+||++++......      ....++.+.-  
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~~--   76 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEAL--   76 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHHH--
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhhhe--
Confidence            467899999999999999999999999999965   45   899999999999887643211      1122332220  


Q ss_pred             ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (483)
Q Consensus       338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~  398 (483)
                          .....+..++.++.+++++.+++++|.+++++++||+|++|+++|++|++|+++.+.
T Consensus        77 ----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          77 ----LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             ----HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ----eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                122335667889999999999999999999999999999999999999999998654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.8e-14  Score=121.77  Aligned_cols=134  Identities=10%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCC----ccc-cccccccc
Q 011558          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL----PIL-QQPVSSIQ  335 (483)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~----~~~-~~~v~~l~  335 (483)
                      .+.+.+++|+.+|+++|.+++++++||+++ .+++   +++|++|.+||++++...........    ..+ ........
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPP   94 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCT
T ss_pred             EEECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhh
Confidence            355678889999999999999999999953 2345   89999999999998864322211000    000 01111111


Q ss_pred             ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (483)
Q Consensus       336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~  399 (483)
                      .......++++|.+++.++.+++++.+++++|.+++.+++||+| +|+++|+||++||++.+.+
T Consensus        95 ~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          95 YTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             TCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            22333467889999999999999999999999999999999987 7899999999999997653

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.6e-07  Score=73.66  Aligned_cols=66  Identities=26%  Similarity=0.518  Sum_probs=50.6

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEcCCceEEEEEEE---cCeee--eCCCCCe
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYV---DGEWR--HDENQPH   88 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v---dg~w~--~d~~~~~   88 (483)
                      -|+|+ |...|++|+|+|+||+|+.. .+|.+.. ..|.|++.++....-..|||.|   ||+|.  .||-.-.
T Consensus        21 Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~-~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~   93 (110)
T d1m7xa1          21 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFE   93 (110)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEEECCCCCCceEEeEEec-CCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhcc
Confidence            37885 88889999999999999865 5887643 2689999998766667888887   78865  4775443

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.44  E-value=7e-08  Score=74.94  Aligned_cols=64  Identities=22%  Similarity=0.365  Sum_probs=52.3

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCC
Q 011558           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGN   92 (483)
Q Consensus        22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~   92 (483)
                      -|+|+ |...|++|.|+++++.    .+|.+.+  +|+|++++.+.+|.+ |||+|||.|+.||......++
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~~--~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~~   86 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPDG   86 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTTC
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEcc--CEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCCC
Confidence            36665 5666999999997654    5798877  899999999999976 999999999999976665543

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.92  E-value=1.1e-05  Score=63.70  Aligned_cols=60  Identities=25%  Similarity=0.522  Sum_probs=47.7

Q ss_pred             CCcceEEEEEecCC---CceEEEEeccC---CCCCC--CCCCcCC--CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           17 GSILVPVRFIWPNG---GRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        17 ~~~~~~~~f~~~~~---~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      .+..++|+|...+.   |++|+|+|+..   ||++.  ++|...+  ...+.|+.++.||+| .++|||++
T Consensus         3 ~~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           3 TPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            34678899998664   89999999976   89874  4787643  125689999999998 59999998

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.89  E-value=2e-05  Score=61.68  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=46.7

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCC--CCCCCcCCC--CCCeEEEEEEcCCce-EEEEEEE
Q 011558           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~l~~g~-~~ykf~v   76 (483)
                      +..++|+|....    .|+.|+|+|+..   +|++  .++|.....  ..+.|+.++.||+|. ++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           3 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            356899998753    389999999976   8976  458876543  246899999999995 9999997

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.86  E-value=2.7e-05  Score=61.14  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=47.1

Q ss_pred             CcceEEEEEecC----CCceEEEEecc---CCCCCC--CCCCcCCC--CCCeEEEEEEcCCc-eEEEEEEE
Q 011558           18 SILVPVRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        18 ~~~~~~~f~~~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +..++|+|....    .|+.|+|+|+.   -+|++.  ++|...+.  ....|.+++.+|.| .++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           3 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            467999999843    48999999996   489854  68886542  24689999999998 69999998

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.71  E-value=7e-05  Score=59.06  Aligned_cols=56  Identities=23%  Similarity=0.498  Sum_probs=41.9

Q ss_pred             eEEEEEe--cC---CCceEEEEeccC---CCCCC--CCCCcCCC-----CCCeEEEEEEcCCc-eEEEEEEE
Q 011558           21 VPVRFIW--PN---GGRRVSLSGSFT---RWSEP--MPMSPSEG-----CPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~--~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~-----~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      +.|+|+.  ++   .|+.|+|+|+..   +|++.  .+|...++     ..+.|++++.||+| .++|||++
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            4555555  33   388999999986   89875  47765432     24689999999998 59999987

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.64  E-value=1.1e-05  Score=61.32  Aligned_cols=62  Identities=21%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe-eeeCCCCCeee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-WRHDENQPHVS   90 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-w~~d~~~~~~~   90 (483)
                      ++|+ |...|++|.|+|.+.+|   .+|.+.+  +|+|++.++ +.+| +.|+|.|||. ++.||......
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~--~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~~~   75 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDE--KGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRYQP   75 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCT--TSEECCEESSCCSC-CEECEECTTSCEECCTTCSCCT
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCC--CCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhcCC
Confidence            3554 56679999999875443   5788876  899999985 6777 6699999876 67787655443

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.48  E-value=9e-05  Score=57.14  Aligned_cols=56  Identities=16%  Similarity=0.235  Sum_probs=41.2

Q ss_pred             eEEEEEecC----CCceEEEEeccC---CCCCCC--CCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (483)
Q Consensus        21 ~~~~f~~~~----~~~~V~l~Gsf~---~W~~~~--~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v   76 (483)
                      ++++|.-.+    .|+.|+|+|+..   +|++..  .|.......+.|++.+.||+| .++|||++
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            556666633    389999999988   998742  222222235789999999998 59999998

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.51  E-value=0.015  Score=48.47  Aligned_cols=59  Identities=14%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             ceEEEE-EecCCCceEEEEeccCCCCCC----CCCCcCCCCCCeEEEEEE--------cCCceEEEEEEEcCeee
Q 011558           20 LVPVRF-IWPNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR--------LPPGHHQYKFYVDGEWR   81 (483)
Q Consensus        20 ~~~~~f-~~~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~--------l~~g~~~ykf~vdg~w~   81 (483)
                      ..-|+| .|...|++|.|+--.++|...    ++|.+..  +|+|.+.++        +.+|.+ |.|.|+|.|.
T Consensus        15 g~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~--~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~~   86 (162)
T d1bf2a1          15 QANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPNW   86 (162)
T ss_dssp             SSEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTTB
T ss_pred             CeeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccccc--ccEEEEEecccccccccCCCCcE-EEEEEccccC
Confidence            345678 578889999999977777542    3676654  799999986        667754 8889999863

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.91  E-value=0.051  Score=42.21  Aligned_cols=56  Identities=16%  Similarity=0.204  Sum_probs=35.5

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-C-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558           23 VRFI-WPNGGRRVSLSGSFTRWSE-P-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (483)
Q Consensus        23 ~~f~-~~~~~~~V~l~Gsf~~W~~-~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w   80 (483)
                      +.|+ |...|++|.|+-...+|.. . .+|.... .+|+|++.++ +.+|.+ |+|.|+|.+
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~-~~GvW~~~i~~~~~G~~-Y~y~v~~~~   78 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVYH   78 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcC-CCCEEEEEECCCCCCCE-EEEEEEccc
Confidence            3454 5767999999854444332 1 2454432 2689999886 567765 888887653

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=88.67  E-value=2.3  Score=33.69  Aligned_cols=85  Identities=22%  Similarity=0.322  Sum_probs=57.9

Q ss_pred             CCcceEEEEEecCC--------CceEEEEeccCCCC----CCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE-c-----
Q 011558           17 GSILVPVRFIWPNG--------GRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV-D-----   77 (483)
Q Consensus        17 ~~~~~~~~f~~~~~--------~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v-d-----   77 (483)
                      +...+-|+|.|..+        .+.|+|-++---..    ....|.+..+ ..+|..++.||.. +-.|+|+- .     
T Consensus        19 ~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~g-TDVW~~s~~vpad~rgsY~fip~~~~~~~   97 (145)
T d3c8da1          19 NDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIF   97 (145)
T ss_dssp             CSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTT
T ss_pred             CCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCC-CCeEEEEEEECcccEEEEEEEecCcccCC
Confidence            45678999999763        24599988766433    1135888765 6899999999997 78999984 1     


Q ss_pred             ----C------e-e-------eeCCCCCee-eCCCCCeeeEEEe
Q 011558           78 ----G------E-W-------RHDENQPHV-SGNYGVVNCVYIA  102 (483)
Q Consensus        78 ----g------~-w-------~~d~~~~~~-~~~~g~~nn~~~v  102 (483)
                          +      + |       +.||-||.. .+.-|+-.++++.
T Consensus        98 ~~~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~l  141 (145)
T d3c8da1          98 SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  141 (145)
T ss_dssp             CCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             CcCCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCccccccc
Confidence                1      1 2       568888743 3556666778776

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=82.86  E-value=1.4  Score=33.87  Aligned_cols=60  Identities=10%  Similarity=0.040  Sum_probs=39.7

Q ss_pred             CCcceEEEEEecC-CCceEEEEe-ccCCCCC-CCCCCcCC-CCCC---eEEEEEEcCCceEEEEEEE
Q 011558           17 GSILVPVRFIWPN-GGRRVSLSG-SFTRWSE-PMPMSPSE-GCPA---VFQIICRLPPGHHQYKFYV   76 (483)
Q Consensus        17 ~~~~~~~~f~~~~-~~~~V~l~G-sf~~W~~-~~~m~~~~-~~~~---~~~~~~~l~~g~~~ykf~v   76 (483)
                      ....+.++++=+. ..++|+|.- .=-.|.. ..+|.+.. ...+   +|+++++++.++..|+|++
T Consensus        28 ~g~~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~F~l   94 (122)
T d1ji1a1          28 STQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQI   94 (122)
T ss_dssp             TTCCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEE
T ss_pred             CCCEEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence            3457888887754 478888863 2224532 23565432 1123   8899999999999999998