Citrus Sinensis ID: 011566

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MAACPFSLICLFSLLILLFTTDAGAGSSAATVTVPLTPLSTKHYLHHSDSDPLKILHSLASSSLSRARHLKTKTKPKTKDSNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA
ccccHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEccccEEEEEEEEEEEEccccccccEEEEccccccccccEEEccccccccHHHHccccccEEcccccccccccccccEEEccccccccccccccEEccccccccccccccccEEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccEEEcccccEEEEEcccEEEEEEEEccccccccccccEEEEcccEEEEEEEEEEccccEEEEEccccc
cccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEccccEEEEEccccHHHcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEEEEccccccEEEEEEEEEEcccccccEEEEEcccccccccEEEEccccccccHHHcccccEEEEEcccccccccccEEEEEcccccccccccccccEcccccccccccccccEEEEEEEEEEEEccEEEcccHHHcccccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccEEccccccccccEEEEEEccccEEEccHHHEEEEccccEEEEEEEcccccccccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
MAACPFSLICLFSLLILLFttdagagssaatvtvpltplstkhylhhsdsdplKILHSLASSSLSRARhlktktkpktkdsnigsnysnsliktplsvhsyggysislsfgtppqastpfifdtgsslvwfpctsryrcvdcnfpnvdpsripafipkrssssqligcqnpkcswifgpnvesrckgcsprnktcplacpsyllqyglgftAGLLLSetlrfpsktvpnflagcsilsdrqpagiagfgrsseslpsqlglkkFSYCLLsrkfddapvssnlvldtgpgsgdsktpglsytpfyknpvgsssafgeFYYVGLRQIIVgskhvkipysylvpgsdgnggvivdsgstftfmegplfEAVAKEFIRQMGnysraadvekksglrpcfdisgkksvylpELILKFKggakmalppenyfaLVGNEVLCLILftdnaagpalgrgpaiilgdfqlqnfylefdlandrfgfakqkca
MAACPFSLICLFSLLILLFTTDAGAGSSAATVTVPLTPLSTKHYLHHSDSDPLKILHSLASsslsrarhlktktkpktkdsnigsnysnsliKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFgrsseslpsqlGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYsraadvekksglrpcfdisgkksvylPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA
MAACPfsliclfsllillfttdagagssaatvtvPLTPLSTKHYLHHSDSDPLKIlhslassslsrarhlKTKTKPKTKDSNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA
***CPFSLICLFSLLILLFTTDAGAGSSAATVTVPLTPLSTKHYLH********************************************LIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIP******QLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGF**********LGLKKFSYCLLSRKFDDA***********************YTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA*****
****PFSLICLFSLLILLFTTDAG************************************************************************SVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCN************************CQ*PKCSWIFGPNVE******SP*NKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSR************LDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMG**********KSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA
MAACPFSLICLFSLLILLFTTDAGAGSSAATVTVPLTPLSTKHYLHHSDSDPLKILHSLASSSLS***************SNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA
****PFSLICLFSLLILLFTTDAGAGSSAATVTVPLTPLSTKHY***SDSDPLKILHSLASSSLSRARHLKTKTKP*****************TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAACPFSLICLFSLLILLFTTDAGAGSSAATVTVPLTPLSTKHYLHHSDSDPLKILHSLASSSLSRARHLKTKTKPKTKDSNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q766C3437 Aspartic proteinase nepen N/A no 0.691 0.764 0.312 6e-34
Q766C2438 Aspartic proteinase nepen N/A no 0.842 0.929 0.278 9e-32
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.734 0.71 0.268 3e-23
Q3EBM5447 Probable aspartic proteas no no 0.699 0.756 0.293 1e-21
Q9LZL3453 Aspartic proteinase PCS1 no no 0.681 0.726 0.291 5e-21
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.830 0.853 0.274 4e-20
Q9S9K4475 Aspartic proteinase-like no no 0.689 0.701 0.246 2e-17
Q6XBF8437 Aspartic proteinase CDR1 no no 0.670 0.741 0.293 3e-17
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.691 0.814 0.244 8e-09
P18242410 Cathepsin D OS=Mus muscul yes no 0.662 0.780 0.247 3e-08
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 177/391 (45%), Gaps = 57/391 (14%)

Query: 102 GGYSISLSFGTPPQASTPF--IFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKR 159
           G Y ++LS GTP Q   PF  I DTGS L+W  C    +C +           P F P+ 
Sbjct: 93  GEYLMNLSIGTPAQ---PFSAIMDTGSDLIWTQCQPCTQCFN--------QSTPIFNPQG 141

Query: 160 SSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSE 218
           SSS   + C +  C  +  P        CS  N  C      Y   YG G  T G + +E
Sbjct: 142 SSSFSTLPCSSQLCQALSSPT-------CS--NNFC-----QYTYGYGDGSETQGSMGTE 187

Query: 219 TLRFPSKTVPNFLAGCSI----LSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFD 274
           TL F S ++PN   GC            AG+ G GR   SLPSQL + KFSYC+      
Sbjct: 188 TLTFGSVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCMTPIG-- 245

Query: 275 DAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKI 334
            +   SNL+L +   S  + +P  +           SS    FYY+ L  + VGS  + I
Sbjct: 246 -SSTPSNLLLGSLANSVTAGSPNTTLI--------QSSQIPTFYYITLNGLSVGSTRLPI 296

Query: 335 -PYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRP 393
            P ++ +  ++G GG+I+DSG+T T+     +++V +EFI Q+   +        SG   
Sbjct: 297 DPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI---NLPVVNGSSSGFDL 353

Query: 394 CFDI-SGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGP 452
           CF   S   ++ +P  ++ F GG  + LP ENYF    N ++CL + + +          
Sbjct: 354 CFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNGLICLAMGSSSQG-------- 404

Query: 453 AIILGDFQLQNFYLEFDLANDRFGFAKQKCA 483
             I G+ Q QN  + +D  N    FA  +C 
Sbjct: 405 MSIFGNIQQQNMLVVYDTGNSVVSFASAQCG 435
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|P18242|CATD_MOUSE Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
255587337468 pepsin A, putative [Ricinus communis] gi 0.908 0.938 0.632 1e-164
224091907469 predicted protein [Populus trichocarpa] 0.886 0.912 0.628 1e-158
356503843474 PREDICTED: aspartic proteinase nepenthes 0.954 0.972 0.585 1e-155
297819968469 aspartyl protease family protein [Arabid 0.929 0.957 0.601 1e-154
225440731469 PREDICTED: aspartic proteinase nepenthes 0.942 0.970 0.592 1e-154
147789749 609 hypothetical protein VITISV_025616 [Viti 0.942 0.747 0.592 1e-153
18409620469 aspartyl protease family protein [Arabid 0.929 0.957 0.586 1e-151
224140036459 predicted protein [Populus trichocarpa] 0.910 0.958 0.611 1e-151
16209647469 AT3g52500/F22O6_120 [Arabidopsis thalian 0.929 0.957 0.583 1e-150
356570895470 PREDICTED: aspartic proteinase nepenthes 0.902 0.927 0.595 1e-149
>gi|255587337|ref|XP_002534234.1| pepsin A, putative [Ricinus communis] gi|223525662|gb|EEF28148.1| pepsin A, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/462 (63%), Positives = 356/462 (77%), Gaps = 23/462 (4%)

Query: 28  SAATVTVPLTPLSTKHYLHHSDSDPLKILHSLASSSLSRARHLKTKTKPKTKDSNIGSNY 87
           S +T+T+PL+P  TK       SDP + L+ LA++S+SRA HLK+   PKT       N+
Sbjct: 24  SPSTITIPLSPTITKR----PSSDPWEYLNHLATTSISRAHHLKS---PKT-------NF 69

Query: 88  SNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNV 147
           S  LIKTPL   SYGGYS+SLS GTP Q +   I DTGSSLVWFPCTSRY C  CNFPN 
Sbjct: 70  S--LIKTPLFSRSYGGYSMSLSLGTPSQ-TVKLIMDTGSSLVWFPCTSRYVCASCNFPNT 126

Query: 148 DPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYG 207
           D ++IP F+P+ SSSS+LIGC+NPKC+W+FG +V+S+C  C+P+ + C  ACP Y++QYG
Sbjct: 127 DITKIPKFMPRLSSSSKLIGCKNPKCAWVFGSSVQSKCHNCNPQAQNCTQACPPYIIQYG 186

Query: 208 LGFTAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYC 267
           LG TAGLLLSET+ FP+KT+ +FLAGCS+LS RQP GIAGFGRS ESLP QLGLKKFSYC
Sbjct: 187 LGSTAGLLLSETINFPNKTISDFLAGCSLLSTRQPEGIAGFGRSQESLPLQLGLKKFSYC 246

Query: 268 LLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSS-AFGEFYYVGLRQII 326
           L+SR+FDD+PVSS+L+LD GP + DSKT GLSYTPF KN    S+ AF E+YYV LR+II
Sbjct: 247 LVSRRFDDSPVSSDLILDMGPSTSDSKTTGLSYTPFQKNLASQSNPAFQEYYYVMLRKII 306

Query: 327 VGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVE 386
           VG  HVK+PYS+LVPGSDGNGG IVDSGSTFTF+EG +FE +AKEF +QM NY+ A +V+
Sbjct: 307 VGKTHVKVPYSFLVPGSDGNGGTIVDSGSTFTFVEGHVFELLAKEFEKQMANYTVATNVQ 366

Query: 387 KKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAA-- 444
           K +GLRPCFDISG+KSV +P+L  +FKGGAKM LP  NYFA V   V+CL + +DNAA  
Sbjct: 367 KLTGLRPCFDISGEKSVVIPDLTFQFKGGAKMQLPLSNYFAFVDMGVVCLTIVSDNAAAL 426

Query: 445 ---GPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA 483
              G     GPAIILG+FQ QNFY+E+DL NDRFGF +Q CA
Sbjct: 427 GGDGGVRSSGPAIILGNFQQQNFYIEYDLENDRFGFKEQSCA 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224091907|ref|XP_002309394.1| predicted protein [Populus trichocarpa] gi|222855370|gb|EEE92917.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356503843|ref|XP_003520712.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|297819968|ref|XP_002877867.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297323705|gb|EFH54126.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225440731|ref|XP_002280866.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789749|emb|CAN67405.1| hypothetical protein VITISV_025616 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18409620|ref|NP_566966.1| aspartyl protease family protein [Arabidopsis thaliana] gi|13430562|gb|AAK25903.1|AF360193_1 unknown protein [Arabidopsis thaliana] gi|4886277|emb|CAB43423.1| putative protein [Arabidopsis thaliana] gi|14532764|gb|AAK64083.1| unknown protein [Arabidopsis thaliana] gi|15450892|gb|AAK96717.1| Unknown protein [Arabidopsis thaliana] gi|30387567|gb|AAP31949.1| At3g52500 [Arabidopsis thaliana] gi|332645431|gb|AEE78952.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224140036|ref|XP_002323393.1| predicted protein [Populus trichocarpa] gi|222868023|gb|EEF05154.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|16209647|gb|AAL14384.1| AT3g52500/F22O6_120 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356570895|ref|XP_003553619.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2079919469 AT3G52500 [Arabidopsis thalian 0.917 0.944 0.575 1e-139
TAIR|locus:2153197491 AT5G45120 [Arabidopsis thalian 0.761 0.749 0.344 7.7e-48
TAIR|locus:2045615527 AT2G42980 [Arabidopsis thalian 0.722 0.662 0.316 2.6e-38
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.544 0.544 0.317 1.7e-37
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.722 0.652 0.315 3.9e-37
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.703 0.737 0.326 2.1e-36
TAIR|locus:2102335452 AT3G25700 [Arabidopsis thalian 0.743 0.794 0.306 2.1e-36
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.612 0.612 0.315 1.6e-31
TAIR|locus:2169886442 AT5G37540 [Arabidopsis thalian 0.726 0.794 0.287 9.4e-28
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.730 0.789 0.294 2.2e-26
TAIR|locus:2079919 AT3G52500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
 Identities = 259/450 (57%), Positives = 326/450 (72%)

Query:    38 PLSTKHYLHHSDSDPLKIXXXXXXXXXXXXXXXKTKTKPKTKDSNIGSNYSNS--LIKTP 95
             PLS   +   S  DP                  K  T  K  +  + S  + S  ++K+P
Sbjct:    22 PLSPFSHSDQSPKDPYLSLRRLAESSIARAHKLKHGTSIKPDEDALSSTTTASATVVKSP 81

Query:    96 LSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAF 155
             LS  SYGGYS+SLSFGTP Q + PF+FDTGSSLVW PCTSRY C  C+F  +DP+ IP F
Sbjct:    82 LSAKSYGGYSVSLSFGTPSQ-TIPFVFDTGSSLVWLPCTSRYLCSGCDFSGLDPTLIPRF 140

Query:   156 IPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLL 215
             IPK SSSS++IGCQ+PKC +++GPNV+  C+GC P  + C + CP Y+LQYGLG TAG+L
Sbjct:   141 IPKNSSSSKIIGCQSPKCQFLYGPNVQ--CRGCDPNTRNCTVGCPPYILQYGLGSTAGVL 198

Query:   216 LSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDD 275
             ++E L FP  TVP+F+ GCSI+S RQPAGIAGFGR   SLPSQ+ LK+FS+CL+SR+FDD
Sbjct:   199 ITEKLDFPDLTVPDFVVGCSIISTRQPAGIAGFGRGPVSLPSQMNLKRFSHCLVSRRFDD 258

Query:   276 APVSSNLVLDTGPG-SGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKI 334
               V+++L LDTG G +  SKTPGL+YTPF KNP  S+ AF E+YY+ LR+I VG KHVKI
Sbjct:   259 TNVTTDLDLDTGSGHNSGSKTPGLTYTPFRKNPNVSNKAFLEYYYLNLRRIYVGRKHVKI 318

Query:   335 PYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPC 394
             PY YL PG++G+GG IVDSGSTFTFME P+FE VA+EF  QM NY+R  D+EK++GL PC
Sbjct:   319 PYKYLAPGTNGDGGSIVDSGSTFTFMERPVFELVAEEFASQMSNYTREKDLEKETGLGPC 378

Query:   395 FDISGKKSVYLPELILKFKGGAKMALPPENYFALVGN-EVLCLILFTDNAAGPALGRGPA 453
             F+ISGK  V +PELI +FKGGAK+ LP  NYF  VGN + +CL + +D    P+ G GPA
Sbjct:   379 FNISGKGDVTVPELIFEFKGGAKLELPLSNYFTFVGNTDTVCLTVVSDKTVNPSGGTGPA 438

Query:   454 IILGDFQLQNFYLEFDLANDRFGFAKQKCA 483
             IILG FQ QN+ +E+DL NDRFGFAK+KC+
Sbjct:   439 IILGSFQQQNYLVEYDLENDRFGFAKKKCS 468
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
TAIR|locus:2153197 AT5G45120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169886 AT5G37540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.35LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 5e-72
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-49
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-38
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-32
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-30
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-12
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 4e-12
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 4e-07
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 1e-06
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 4e-06
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 1e-05
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-05
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-04
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 0.002
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  228 bits (584), Expect = 5e-72
 Identities = 108/293 (36%), Positives = 134/293 (45%), Gaps = 66/293 (22%)

Query: 199 CPSYLLQYGLG-FTAGLLLSETLRFPS--KTVPNFLAGCS----ILSDRQPAGIAGFGRS 251
           C SY   YG G  T+G+L +ET  F     +VPN   GC       S     GI G GR 
Sbjct: 30  CCSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRG 89

Query: 252 SESLPSQLGLK--KFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVG 309
             SL SQLG    KFSYCL+    DD   SS L+L       D    G+ YTP  KNP  
Sbjct: 90  PLSLVSQLGSTGNKFSYCLVP--HDDTGGSSPLILGDAA---DLGGSGVVYTPLVKNPAN 144

Query: 310 SSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVA 369
            +     +YYV L  I VG K + IP S     SDG+GG I+DSG+T T++  P +    
Sbjct: 145 PT-----YYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY---- 195

Query: 370 KEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALV 429
                                               P+L L F GGA + LPPENYF  V
Sbjct: 196 ------------------------------------PDLTLHFDGGADLELPPENYFVDV 219

Query: 430 GNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKC 482
           G  V+CL + + ++       G   ILG+ Q QNF +E+DL N R GFA   C
Sbjct: 220 GEGVVCLAILSSSS-------GGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.95
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.94
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.86
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.08
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.68
PF1365090 Asp_protease_2: Aspartyl protease 95.91
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.22
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.02
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 94.8
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 94.54
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 89.88
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 89.87
COG3577215 Predicted aspartyl protease [General function pred 86.77
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 85.9
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 83.36
PF1365090 Asp_protease_2: Aspartyl protease 81.64
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 81.08
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.4e-66  Score=530.35  Aligned_cols=395  Identities=29%  Similarity=0.506  Sum_probs=314.6

Q ss_pred             CCCceEEEecccCCcCC-cCCCCCCChHHHHHHHHhhhHhhHHhhhccCCCCCCCCCCCCCcccccccccccccCcccEE
Q 011566           27 SSAATVTVPLTPLSTKH-YLHHSDSDPLKILHSLASSSLSRARHLKTKTKPKTKDSNIGSNYSNSLIKTPLSVHSYGGYS  105 (483)
Q Consensus        27 ~~~~~~~lpl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~  105 (483)
                      .+...++++|.|+..++ |+++++.++.+++++.++|+.+|++++.++.   .         ....+..++.. +++.|+
T Consensus        20 ~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~---------~~~~~~~~~~~-~~~~Y~   86 (431)
T PLN03146         20 APKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTD---A---------SPNDPQSDLIS-NGGEYL   86 (431)
T ss_pred             ccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcc---c---------cCCccccCccc-CCccEE
Confidence            34568999999987653 3556777888999999999999999886541   1         01123334433 357999


Q ss_pred             EEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCCCCC
Q 011566          106 ISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRC  185 (483)
Q Consensus       106 ~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~~~c  185 (483)
                      ++|.||||||+ +.|++||||+++||+|.   +|..|..     +..+.|||++|+||+.++|.++.|+.+...      
T Consensus        87 v~i~iGTPpq~-~~vi~DTGS~l~Wv~C~---~C~~C~~-----~~~~~fdps~SST~~~~~C~s~~C~~~~~~------  151 (431)
T PLN03146         87 MNISIGTPPVP-ILAIADTGSDLIWTQCK---PCDDCYK-----QVSPLFDPKKSSTYKDVSCDSSQCQALGNQ------  151 (431)
T ss_pred             EEEEcCCCCce-EEEEECCCCCcceEcCC---CCccccc-----CCCCcccCCCCCCCcccCCCCcccccCCCC------
Confidence            99999999999 99999999999999999   9999976     457899999999999999999999876532      


Q ss_pred             CCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCc-----CcCceeeeccccCC----CCCceEeecCCCCCCc
Q 011566          186 KGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSK-----TVPNFLAGCSILSD----RQPAGIAGFGRSSESL  255 (483)
Q Consensus       186 ~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~-----~~~~~~fg~~~~~~----~~~~GIlGLg~~~~S~  255 (483)
                      ..|..+ +.|     .|.+.|++|+ +.|.+++|+|+|++.     +++++.|||++...    ...+||||||++.+|+
T Consensus       152 ~~c~~~-~~c-----~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl  225 (431)
T PLN03146        152 ASCSDE-NTC-----TYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSL  225 (431)
T ss_pred             CCCCCC-CCC-----eeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccH
Confidence            123222 235     9999999998 799999999999873     58899999998543    2359999999999999


Q ss_pred             cccccc---ceeeeecccCcCCCCCCccceEEccCCCCCCCCC-CCceeeeceeCCCCCCCCCCcceeEEeeEEEECcEE
Q 011566          256 PSQLGL---KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKT-PGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKH  331 (483)
Q Consensus       256 ~~Ql~~---~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~-g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~vg~~~  331 (483)
                      ++|+..   ++|||||.+..  +.....|.|+||+.  .+ +. +.+.|+|++.+..      ..+|+|+|++|+||++.
T Consensus       226 ~sql~~~~~~~FSycL~~~~--~~~~~~g~l~fG~~--~~-~~~~~~~~tPl~~~~~------~~~y~V~L~gIsVgg~~  294 (431)
T PLN03146        226 ISQLGSSIGGKFSYCLVPLS--SDSNGTSKINFGTN--AI-VSGSGVVSTPLVSKDP------DTFYYLTLEAISVGSKK  294 (431)
T ss_pred             HHHhhHhhCCcEEEECCCCC--CCCCCcceEEeCCc--cc-cCCCCceEcccccCCC------CCeEEEeEEEEEECCEE
Confidence            999864   58999997631  11234689999984  33 43 4589999986421      47899999999999999


Q ss_pred             eeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccccCeEEEE
Q 011566          332 VKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILK  411 (483)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~  411 (483)
                      ++++...+.  ..+.+++||||||++++||+++|++|+++|...+......   .....+..|+....  ...+|+|+|+
T Consensus       295 l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~---~~~~~~~~C~~~~~--~~~~P~i~~~  367 (431)
T PLN03146        295 LPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS---DPQGLLSLCYSSTS--DIKLPIITAH  367 (431)
T ss_pred             CcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC---CCCCCCCccccCCC--CCCCCeEEEE
Confidence            988776654  2344689999999999999999999999999887632211   12234679997532  2578999999


Q ss_pred             EcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeCCCC
Q 011566          412 FKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA  483 (483)
Q Consensus       412 f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~~C~  483 (483)
                      | +|+++.|++++|++...++..|++++..         ...||||+.|||++|+|||++++|||||+++|+
T Consensus       368 F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~---------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        368 F-TGADVKLQPLNTFVKVSEDLVCFAMIPT---------SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             E-CCCeeecCcceeEEEcCCCcEEEEEecC---------CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            9 6899999999999987767789987642         135999999999999999999999999999996

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-16
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-16
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 9e-14
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 4e-12
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 3e-11
1htr_B329 Crystal And Molecular Structures Of Human Progastri 1e-06
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 9e-06
1lya_B241 Crystal Structures Of Native And Inhibited Forms Of 4e-05
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 5e-04
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 50/285 (17%)
Query: 226 TVPNFLAGCSILSDRQP-----AGIAGFGRSSESLPSQLG-----LKKFSYCLLSRKFDD 275
           TVP F+  C+  S  Q       G+AG GR+  +LPSQ        +KF+ CL       
Sbjct: 130 TVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL------S 183
Query: 276 APVSSNLVLDTGPGSGDSKT---------PGLSYTPFYKNPVGSS--SAFGE---FYYVG 321
              SSN V+  G    D  T           L+YTP   NPV +S  S  GE    Y++G
Sbjct: 184 GSTSSNSVIIFG---NDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 322 LRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSR 381
           ++ I + SK V +  S L   S G GG  + + + +T +E  +++AV + FI++    S 
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKE----SA 296
Query: 382 AADVEKKSGLRP---CFDISGKKSVYL----PELILKFKGGAKM-ALPPENYFALVGNEV 433
           A ++ + + + P   CF      S  L    P + L  +  + +  +   N    + + V
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNV 356
Query: 434 LCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA 478
           +CL +      G  L    +I++G  QL++  ++FDLA  R GF+
Sbjct: 357 VCLGVVD---GGSNL--RTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 8e-71
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 5e-70
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 3e-68
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 4e-22
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 4e-22
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 4e-21
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-20
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 3e-20
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 4e-20
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-19
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 4e-19
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-19
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 6e-19
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 7e-19
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-18
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-18
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 5e-18
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 9e-18
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 9e-18
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-17
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-17
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 6e-17
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 5e-15
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-14
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 4e-14
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-13
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-11
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 6e-11
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-10
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 7e-10
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 1e-09
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 2e-09
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-06
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 3e-09
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 4e-06
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  229 bits (585), Expect = 8e-71
 Identities = 71/408 (17%), Positives = 126/408 (30%), Gaps = 62/408 (15%)

Query: 99  HSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPK 158
            S G +  +L   TP     P + D   + +W  C  +Y             + P     
Sbjct: 18  GSTGLHWANLQKRTPLM-QVPVLVDLNGNHLWVNCEQQYSSKTY--------QAPFCHST 68

Query: 159 RSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLG-FTAGLLLS 217
           + S +    C +   +            GC          C              G L  
Sbjct: 69  QCSRANTHQCLSCPAA---------SRPGCHKNT------CGLMSTNPITQQTGLGELGE 113

Query: 218 ETLRF-----------PSKTVPNFLAGCSILSDRQP------AGIAGFGRSSESLPSQLG 260
           + L             P  TVP FL  C+     Q        G+AG G +  SLP+QL 
Sbjct: 114 DVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLA 173

Query: 261 -----LKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFG 315
                 ++F+ CL             ++    P +         +      P   +    
Sbjct: 174 SHFGLQRQFTTCLSRYPTS----KGAIIFGDAPNNMRQFQNQDIFHDLAFTP--LTITLQ 227

Query: 316 EFYYVGLRQIIVGSKHVK-IPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIR 374
             Y V +  I +    V  +           +GG ++ + +    ++  +++A  + F +
Sbjct: 228 GEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQ 287

Query: 375 QMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVL 434
           Q+   ++   V   +    CF+ +   +    +L++    G    +  E+        V 
Sbjct: 288 QLPKQAQVKSV---APFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVT 344

Query: 435 CLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKC 482
           CL +               I LG  QL+   + FDLA  R GF+    
Sbjct: 345 CLGVMNGGMQP-----RAEITLGARQLEENLVVFDLARSRVGFSTSSL 387
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.7
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.09
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 92.83
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 92.81
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 88.71
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=100.00  E-value=1.3e-59  Score=474.88  Aligned_cols=308  Identities=25%  Similarity=0.362  Sum_probs=257.5

Q ss_pred             cccccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCC
Q 011566           91 LIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQN  170 (483)
Q Consensus        91 ~~~~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~  170 (483)
                      ....||.++.+..|+++|+||||||+ |.|+|||||+++||+|.   .|..|     .|..++.|+|++|+||+...|  
T Consensus        45 ~~~~~l~n~~d~~Y~~~i~iGTPpQ~-~~v~~DTGSs~lWV~s~---~C~~~-----~C~~~~~y~~~~SsT~~~~~~--  113 (370)
T 3psg_A           45 IGDEPLENYLDTEYFGTIGIGTPAQD-FTVIFDTGSSNLWVPSV---YCSSL-----ACSDHNQFNPDDSSTFEATSQ--  113 (370)
T ss_dssp             SCCCTTGGGTTCCEEEEEEETTTTEE-EEEEEETTCCCEEEEBT---TCCSG-----GGTTSCCBCGGGCTTCEEEEE--
T ss_pred             cceecceeccCCEEEEEEEEcCCCCE-EEEEEeCCCCccEEECC---CCCCc-----ccCCCCCCCCccCcCcEECCc--
Confidence            45678999999999999999999999 99999999999999998   88653     235578999999999998763  


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCCC------CCce
Q 011566          171 PKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDR------QPAG  244 (483)
Q Consensus       171 ~~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~------~~~G  244 (483)
                                                    .|.+.||+|++.|.+++|+|+|++..++++.|||+.....      ..+|
T Consensus       114 ------------------------------~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dG  163 (370)
T 3psg_A          114 ------------------------------ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG  163 (370)
T ss_dssp             ------------------------------EEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSE
T ss_pred             ------------------------------EEEEEeCCceEEEEEEEEEEeeCCcccCCeEEEEEEeecccccccCCccc
Confidence                                          8999999999999999999999999999999999986532      3499


Q ss_pred             EeecCCCCCCcc----------cc--cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCC
Q 011566          245 IAGFGRSSESLP----------SQ--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSS  312 (483)
Q Consensus       245 IlGLg~~~~S~~----------~Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~  312 (483)
                      |||||++.++..          +|  +..++||+||.+.     ...+|.|+|||+|+++ +.|++.|+|+..       
T Consensus       164 IlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~-----~~~~G~l~fGg~D~~~-y~g~l~~~pv~~-------  230 (370)
T 3psg_A          164 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSN-----DDSGSVVLLGGIDSSY-YTGSLNWVPVSV-------  230 (370)
T ss_dssp             EEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC----------CEEEEETCCCGGG-BSSCCEEEECSE-------
T ss_pred             eeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccC-----CCCCeEEEEEeeChHh-cCCcceeecccc-------
Confidence            999999877632          22  4458999999874     2357899999999999 999999999987       


Q ss_pred             CCCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCcc
Q 011566          313 AFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLR  392 (483)
Q Consensus       313 ~~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  392 (483)
                        ..+|.|.|++|+|+++.+..         .+...+||||||+++++|++++++|.+++++..        ...+.+.+
T Consensus       231 --~~~w~v~l~~i~v~g~~~~~---------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~--------~~~g~~~v  291 (370)
T 3psg_A          231 --EGYWQITLDSITMDGETIAC---------SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE--------NSDGEMVI  291 (370)
T ss_dssp             --ETTEEEEECEEESSSSEEEC---------TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE--------CTTCCEEC
T ss_pred             --cceeEEEEeEEEECCEEEec---------CCCceEEEcCCCCcEECCHHHHHHHHHHhCCcc--------cCCCcEEE
Confidence              56899999999999987652         224789999999999999999999998875421        12345778


Q ss_pred             CcccccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCC
Q 011566          393 PCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLAN  472 (483)
Q Consensus       393 ~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~  472 (483)
                      +|...     ..+|+|+|+| +|++|+||+++|+.+  ..+.|+..+...+.  ....++.||||++|||++|+|||+++
T Consensus       292 ~C~~~-----~~lP~i~f~~-~g~~~~l~~~~yi~~--~~~~C~~~~~~~~~--~~~~~~~~ILG~~Fl~~~y~vfD~~~  361 (370)
T 3psg_A          292 SCSSI-----DSLPDIVFTI-DGVQYPLSPSAYILQ--DDDSCTSGFEGMDV--PTSSGELWILGDVFIRQYYTVFDRAN  361 (370)
T ss_dssp             CGGGG-----GGCCCEEEEE-TTEEEEECHHHHEEE--CSSCEEESEEEECC--CTTSCCEEEECHHHHTTEEEEEETTT
T ss_pred             ECCCc-----ccCCcEEEEE-CCEEEEECHHHhccc--CCCEEEEEEEeCCC--CCCCCCcEEeChHHhcceEEEEECCC
Confidence            99876     6789999999 899999999999998  34469988865432  11223469999999999999999999


Q ss_pred             CEEEEEeCC
Q 011566          473 DRFGFAKQK  481 (483)
Q Consensus       473 ~~igfa~~~  481 (483)
                      +|||||+++
T Consensus       362 ~riGfA~a~  370 (370)
T 3psg_A          362 NKVGLAPVA  370 (370)
T ss_dssp             TEEEEEEBC
T ss_pred             CEEEEEEcC
Confidence            999999985
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-47
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 4e-31
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-30
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 9e-30
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 3e-29
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-28
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 9e-28
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-27
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-27
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 4e-27
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 7e-27
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 7e-27
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-26
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 3e-26
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 5e-26
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 2e-24
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 5e-24
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 2e-23
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 5e-23
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 7e-22
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-20
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-19
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  165 bits (418), Expect = 3e-47
 Identities = 76/411 (18%), Positives = 129/411 (31%), Gaps = 69/411 (16%)

Query: 94  TPLSVHSYGG-YSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRI 152
            P++       Y+I    G         + D    LVW  C           P   P+  
Sbjct: 5   APVTKDPATSLYTIPFHDGAS------LVLDVAGPLVWSTCDGGQPP--AEIPCSSPT-- 54

Query: 153 PAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLG-FT 211
                  +++    GC  P C                         C +Y      G   
Sbjct: 55  ----CLLANAYPAPGCPAPSCGS-----------------DKHDKPCTAYPYNPVSGACA 93

Query: 212 AGLLLSETLRFPSKTVPNFLAGCSI-------------LSDRQPAGIAGFGRSSESLPSQ 258
           AG L        +      ++  ++                R   G+AG   S  +LP+Q
Sbjct: 94  AGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQ 153

Query: 259 LG-LKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEF 317
           +   +K +   L       P  +      GP      T  + YTP               
Sbjct: 154 VASAQKVANRFLLCLPTGGPGVAIFGG--GPVPWPQFTQSMPYTPLVTKGGSP------A 205

Query: 318 YYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQM- 376
           +Y+  R I+VG   V +P       +   GGV++ +   +  +   ++  +   F + + 
Sbjct: 206 HYISARSIVVGDTRVPVPEG-----ALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALA 260

Query: 377 ----GNYSRAADVEKKSGLRPCFDISG----KKSVYLPELILKFKGGAKMALPPENYFAL 428
                    A  VE  +    C+D            +P + L   GG+   +  +N    
Sbjct: 261 AQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320

Query: 429 VGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479
           V     C+            GR PA+ILG  Q+++F L+FD+   R GF++
Sbjct: 321 VKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.6e-57  Score=458.53  Aligned_cols=352  Identities=24%  Similarity=0.314  Sum_probs=273.8

Q ss_pred             eEEEecccCCcCCcCCCCCCChHHHHHHHHhhhHhhHHhhhccCCCCCCCCCCCCCcccccccccccccCcccEEEEEEe
Q 011566           31 TVTVPLTPLSTKHYLHHSDSDPLKILHSLASSSLSRARHLKTKTKPKTKDSNIGSNYSNSLIKTPLSVHSYGGYSISLSF  110 (483)
Q Consensus        31 ~~~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~i~i  110 (483)
                      .|++||+|+.              .+|+...+...+.++++.+....+....+.  ........||.++.+..|+++|+|
T Consensus         1 ~v~ipl~k~~--------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~n~~d~~Y~~~i~i   64 (370)
T d3psga_           1 LVKVPLVRKK--------------SLRQNLIKDGKLKDFLKTHKHNPASKYFPE--AAALIGDEPLENYLDTEYFGTIGI   64 (370)
T ss_dssp             CEEEEEEECC--------------CHHHHHHHTTCHHHHHHHCCCCGGGGTCTT--SCCSSCCCTTGGGTTCCEEEEEEE
T ss_pred             CEEEecccCc--------------cHHHHHHHcCcHHHHHHhcccchhhhhccc--ccCcccccccccccCCEEEEEEEE
Confidence            3899999983              134444444444444443311111111111  122334578999888999999999


Q ss_pred             CCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCCCCCCCCCC
Q 011566          111 GTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSP  190 (483)
Q Consensus       111 GtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~~~c~~c~~  190 (483)
                      |||||+ +.|+|||||+++||+|.   .|..|..     +.++.|||++|+||+...|                      
T Consensus        65 GtP~Q~-~~vi~DTGSs~~Wv~~~---~C~~~~~-----~~~~~yd~~~Sst~~~~~~----------------------  113 (370)
T d3psga_          65 GTPAQD-FTVIFDTGSSNLWVPSV---YCSSLAC-----SDHNQFNPDDSSTFEATSQ----------------------  113 (370)
T ss_dssp             TTTTEE-EEEEEETTCCCEEEEBT---TCCSGGG-----TTSCCBCGGGCTTCEEEEE----------------------
T ss_pred             cCCCeE-EEEEEeCCCCCeEEECc---cCCCccc-----ccccccCCCcccccccCCC----------------------
Confidence            999999 99999999999999999   9988754     4578999999999998764                      


Q ss_pred             CCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCCC------CCceEeecCCCCCCc------cc-
Q 011566          191 RNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDR------QPAGIAGFGRSSESL------PS-  257 (483)
Q Consensus       191 ~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~------~~~GIlGLg~~~~S~------~~-  257 (483)
                                .|.+.|++|++.|.++.|++.+++.+++++.||++.....      ..+||+|||++..+.      .. 
T Consensus       114 ----------~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~  183 (370)
T d3psga_         114 ----------ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDN  183 (370)
T ss_dssp             ----------EEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHH
T ss_pred             ----------cEEEEeCCceEEEEEEEEEEeeeceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhh
Confidence                      8999999999999999999999999999999999875432      238999999876542      12 


Q ss_pred             ---c--cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEeeEEEECcEEe
Q 011566          258 ---Q--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHV  332 (483)
Q Consensus       258 ---Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~vg~~~~  332 (483)
                         |  +..+.|++|+.+.     ...+|.++|||+|+.+ +.++++|+|+..         ..+|.|.++++.++++.+
T Consensus       184 l~~~~~i~~~~fs~~l~~~-----~~~~g~l~~Gg~d~~~-~~~~l~~~p~~~---------~~~w~v~~~~i~v~g~~~  248 (370)
T d3psga_         184 LWDQGLVSQDLFSVYLSSN-----DDSGSVVLLGGIDSSY-YTGSLNWVPVSV---------EGYWQITLDSITMDGETI  248 (370)
T ss_dssp             HHHTTCSSSSEEEEEEC----------CEEEEETCCCGGG-BSSCCEEEECSE---------ETTEEEEECEEESSSSEE
T ss_pred             hhhhcccccceeEEEeecC-----CCCCceEecCCcCchh-cccceeEEeecc---------cceEEEEEeeEEeCCeEE
Confidence               2  3448999999874     2357899999999999 999999999976         578999999999999877


Q ss_pred             eeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccccCeEEEEE
Q 011566          333 KIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKF  412 (483)
Q Consensus       333 ~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f  412 (483)
                      ..         .+...+||||||++++||++++++|++++.+...        ..+.+.++|+..     ..+|+|+|+|
T Consensus       249 ~~---------~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~--------~~~~~~~~C~~~-----~~~P~l~f~f  306 (370)
T d3psga_         249 AC---------SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN--------SDGEMVISCSSI-----DSLPDIVFTI  306 (370)
T ss_dssp             EC---------TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC--------TTCCEECCGGGG-----GGCCCEEEEE
T ss_pred             ec---------CCCccEEEecCCceEeCCHHHHHHHHHHhCCeee--------cCCcEEEecccc-----CCCceEEEEE
Confidence            54         2236799999999999999999999988754321        234567789876     6789999999


Q ss_pred             cCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeCC
Q 011566          413 KGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQK  481 (483)
Q Consensus       413 ~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~~  481 (483)
                       +|++|.|++++|+++..  ..|+..+...+.  ....++.||||++|||++|+|||++++||||||+.
T Consensus       307 -~g~~~~l~~~~yi~~~~--~~c~~~~~~~~~--~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         307 -DGVQYPLSPSAYILQDD--DSCTSGFEGMDV--PTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             -TTEEEEECHHHHEEECS--SCEEESEEEECC--CTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             -CCEEEEEChHHeEEEcC--CeEEEEEEEccc--CCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence             89999999999998753  458766654332  23345679999999999999999999999999973
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure