Citrus Sinensis ID: 011579
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | 2.2.26 [Sep-21-2011] | |||||||
| F4JRF4 | 630 | A/G-specific adenine DNA | yes | no | 0.817 | 0.625 | 0.608 | 1e-141 | |
| Q99P21 | 515 | A/G-specific adenine DNA | yes | no | 0.695 | 0.650 | 0.451 | 2e-86 | |
| Q8R5G2 | 516 | A/G-specific adenine DNA | yes | no | 0.701 | 0.655 | 0.439 | 4e-84 | |
| Q9UIF7 | 546 | A/G-specific adenine DNA | yes | no | 0.688 | 0.608 | 0.445 | 2e-82 | |
| Q10159 | 461 | A/G-specific adenine DNA | yes | no | 0.695 | 0.726 | 0.372 | 7e-62 | |
| O31584 | 369 | Probable A/G-specific ade | yes | no | 0.657 | 0.859 | 0.359 | 1e-54 | |
| Q05869 | 350 | A/G-specific adenine glyc | yes | no | 0.618 | 0.851 | 0.345 | 1e-46 | |
| P17802 | 350 | A/G-specific adenine glyc | N/A | no | 0.593 | 0.817 | 0.353 | 9e-46 | |
| P57617 | 350 | A/G-specific adenine glyc | yes | no | 0.618 | 0.851 | 0.323 | 2e-43 | |
| P44320 | 378 | A/G-specific adenine glyc | yes | no | 0.603 | 0.769 | 0.336 | 5e-43 |
| >sp|F4JRF4|MUTYH_ARATH A/G-specific adenine DNA glycosylase OS=Arabidopsis thaliana GN=MYH PE=3 SV=1 | Back alignment and function desciption |
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Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/427 (60%), Positives = 311/427 (72%), Gaps = 33/427 (7%)
Query: 70 DIEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQT 129
DIEDLFSE E +KIR LL WYD N+R+LPWR R E EKE+RAY VWVSE+MLQQT
Sbjct: 118 DIEDLFSENETQKIRMGLLDWYDVNKRDLPWRNRRS---ESEKERRAYEVWVSEIMLQQT 174
Query: 130 RVQTVIDYYNRWMTKWPTIHHLAKASLE-------------------EVNEMWAGLGYYR 170
RVQTV+ YY RWM KWPTI+ L +ASLE EVNEMWAGLGYYR
Sbjct: 175 RVQTVMKYYKRWMQKWPTIYDLGQASLENLIVSRSRELSFLRGNEKKEVNEMWAGLGYYR 234
Query: 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVL 230
RARFLLEGAKM+VA +GFPN S L KV GIG YTAGAIASIAF E VPVVDGNVIRVL
Sbjct: 235 RARFLLEGAKMVVAGTEGFPNQASSLMKVKGIGQYTAGAIASIAFNEAVPVVDGNVIRVL 294
Query: 231 ARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVS 290
ARLKAISANPKD T +NFWKLA QLVD RPGDFNQSLMELGA +CT P+C+SCPVS
Sbjct: 295 ARLKAISANPKDRLTARNFWKLAAQLVDPSRPGDFNQSLMELGATLCTVSKPSCSSCPVS 354
Query: 291 DKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILV 350
+C+A+S+S+ + ++ VT YP KV+KA+ RHD CV+EI ER Q G F+LV
Sbjct: 355 SQCRAFSLSEENRTISVTDYPTKVIKAKPRHDFCCVCVLEI----HNLERNQSGGRFVLV 410
Query: 351 KRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKS--FNLDPRNNCSIILREDVGE 408
KR ++GLLAGLWEFPS+IL+ E D TRR A +LK++ F+++ + C+I+ RE++GE
Sbjct: 411 KRPEQGLLAGLWEFPSVILNEEADSATRRNAINVYLKEAFRFHVELKKACTIVSREELGE 470
Query: 409 FVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVM 468
FVHIF+HIR KV+VELLV+ + GG + + Q K TL+WKCV L+++GLTS VRKV
Sbjct: 471 FVHIFTHIRRKVYVELLVVQLTGGTEDLFKGQAKDTLTWKCVSSDVLSTLGLTSAVRKV- 529
Query: 469 MGKSPPI 475
PP
Sbjct: 530 ----PPF 532
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Involved in oxidative DNA damage repair. Initiates repair of A*oxoG to C*G by removing the inappropriately paired adenine base from the DNA backbone. Possesses both adenine and 2-OH-A DNA glycosylase activities. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: - |
| >sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9UIF7|MUTYH_HUMAN A/G-specific adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1 SV=1 | Back alignment and function description |
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| >sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1 | Back alignment and function description |
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| >sp|O31584|YFHQ_BACSU Probable A/G-specific adenine glycosylase YfhQ OS=Bacillus subtilis (strain 168) GN=yfhQ PE=2 SV=1 | Back alignment and function description |
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| >sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1 | Back alignment and function description |
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| >sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12) GN=mutY PE=1 SV=1 | Back alignment and function description |
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| >sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1 | Back alignment and function description |
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| >sp|P44320|MUTY_HAEIN A/G-specific adenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutY PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| 224131962 | 480 | predicted protein [Populus trichocarpa] | 0.875 | 0.879 | 0.677 | 1e-171 | |
| 297736662 | 506 | unnamed protein product [Vitis vinifera] | 0.927 | 0.883 | 0.600 | 1e-151 | |
| 359495939 | 464 | PREDICTED: A/G-specific adenine DNA glyc | 0.877 | 0.911 | 0.618 | 1e-151 | |
| 255567178 | 775 | A/G-specific adenine glycosylase muty, p | 0.892 | 0.554 | 0.662 | 1e-150 | |
| 356520320 | 471 | PREDICTED: A/G-specific adenine DNA glyc | 0.898 | 0.919 | 0.627 | 1e-149 | |
| 147819042 | 1031 | hypothetical protein VITISV_015579 [Viti | 0.927 | 0.433 | 0.573 | 1e-148 | |
| 307135815 | 401 | A/G-specific adenine DNA glycosylase [Cu | 0.740 | 0.890 | 0.683 | 1e-144 | |
| 449445610 | 401 | PREDICTED: A/G-specific adenine DNA glyc | 0.815 | 0.980 | 0.634 | 1e-144 | |
| 297790670 | 495 | predicted protein [Arabidopsis lyrata su | 0.811 | 0.789 | 0.630 | 1e-143 | |
| 449487373 | 401 | PREDICTED: LOW QUALITY PROTEIN: A/G-spec | 0.815 | 0.980 | 0.631 | 1e-143 |
| >gi|224131962|ref|XP_002321221.1| predicted protein [Populus trichocarpa] gi|222861994|gb|EEE99536.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/434 (67%), Positives = 343/434 (79%), Gaps = 12/434 (2%)
Query: 45 NERKTKKKKERQLPEKKTALPLEEEDIEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERS 104
N K K++RQ KK + DIEDLFS+KE +KIR SLL+WYD NQR+LPWR +
Sbjct: 15 NAAIAKPKEQRQHSSKKQVVA----DIEDLFSDKETQKIRASLLEWYDHNQRDLPWRRIT 70
Query: 105 ESDKEEEKE--------KRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASL 156
++ + KE +RAYGVWVSEVMLQQTRVQTVIDYYNRWM KWPT+HHLA+ASL
Sbjct: 71 QTKETPFKEEEEEEEEERRAYGVWVSEVMLQQTRVQTVIDYYNRWMLKWPTLHHLAQASL 130
Query: 157 EEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFK 216
EEVNEMWAGLGYYRRARFLLEGAKMIVA GDGFP VS LRKVPGIG+YTAGAIASIAFK
Sbjct: 131 EEVNEMWAGLGYYRRARFLLEGAKMIVAGGDGFPKIVSSLRKVPGIGDYTAGAIASIAFK 190
Query: 217 EVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVI 276
EVVPVVDGNVIRVLARLKAISANPKD TVK FWKLA QLVD RPGDFNQSLMELGA +
Sbjct: 191 EVVPVVDGNVIRVLARLKAISANPKDKVTVKKFWKLAAQLVDPHRPGDFNQSLMELGATL 250
Query: 277 CTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGND 336
CTP+NP+C+SCPVS +C+A ++SK D VL+T YP K +K +QRH+ SA C VEI G D
Sbjct: 251 CTPVNPSCSSCPVSGQCRALTISKLDKLVLITDYPAKSIKLKQRHEFSAVCAVEITGRQD 310
Query: 337 ESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRN 396
E Q VF+LVKR DEGLLAGLWEFPS++L E D+T RR+ FLKKSF LDP+
Sbjct: 311 LIEGDQSSSVFLLVKRPDEGLLAGLWEFPSVMLGKEADMTRRRKEMNRFLKKSFRLDPQK 370
Query: 397 NCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLA 456
CS++LRED+GEF+HIF+HIRLKV+VELL++ +KG + KQ + ++WKCVD L+
Sbjct: 371 TCSVLLREDIGEFIHIFTHIRLKVYVELLIVHLKGDMSDLFSKQSRENMTWKCVDREALS 430
Query: 457 SMGLTSGVRKVMMG 470
S+GLTSGVRKVM+G
Sbjct: 431 SLGLTSGVRKVMIG 444
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736662|emb|CBI25679.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359495939|ref|XP_002265027.2| PREDICTED: A/G-specific adenine DNA glycosylase [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255567178|ref|XP_002524570.1| A/G-specific adenine glycosylase muty, putative [Ricinus communis] gi|223536123|gb|EEF37778.1| A/G-specific adenine glycosylase muty, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356520320|ref|XP_003528811.1| PREDICTED: A/G-specific adenine DNA glycosylase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147819042|emb|CAN71629.1| hypothetical protein VITISV_015579 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|307135815|gb|ADN33687.1| A/G-specific adenine DNA glycosylase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
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| >gi|449445610|ref|XP_004140565.1| PREDICTED: A/G-specific adenine DNA glycosylase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297790670|ref|XP_002863220.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297309054|gb|EFH39479.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449487373|ref|XP_004157594.1| PREDICTED: LOW QUALITY PROTEIN: A/G-specific adenine DNA glycosylase-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 482 | ||||||
| TAIR|locus:2135828 | 630 | AT4G12740 [Arabidopsis thalian | 0.815 | 0.623 | 0.541 | 1.4e-110 | |
| MGI|MGI:1917853 | 515 | Mutyh "mutY homolog (E. coli)" | 0.468 | 0.438 | 0.554 | 9.5e-80 | |
| ZFIN|ZDB-GENE-081104-193 | 526 | mutyh "mutY homolog (E. coli)" | 0.470 | 0.431 | 0.517 | 3.2e-79 | |
| UNIPROTKB|E2RG99 | 636 | MUTYH "Uncharacterized protein | 0.489 | 0.371 | 0.539 | 8.4e-79 | |
| UNIPROTKB|E1BZT8 | 461 | MUTYH "Uncharacterized protein | 0.470 | 0.492 | 0.534 | 5.9e-78 | |
| UNIPROTKB|F1P514 | 398 | MUTYH "Uncharacterized protein | 0.470 | 0.570 | 0.534 | 5.9e-78 | |
| UNIPROTKB|E5KP25 | 549 | MUTYH "A/G-specific adenine DN | 0.456 | 0.400 | 0.56 | 3.7e-74 | |
| UNIPROTKB|Q9UIF7 | 546 | MUTYH "A/G-specific adenine DN | 0.456 | 0.402 | 0.56 | 3.7e-74 | |
| DICTYBASE|DDB_G0270764 | 574 | myh "monofunctional DNA glycos | 0.462 | 0.388 | 0.535 | 2e-72 | |
| RGD|620045 | 516 | Mutyh "mutY homolog (E. coli)" | 0.458 | 0.428 | 0.561 | 1.2e-63 |
| TAIR|locus:2135828 AT4G12740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 226/417 (54%), Positives = 285/417 (68%)
Query: 70 DIEDLFSEKEVKKIRQSLLQWYDKNQRELPWXXXXXXXXXXXXXXXAY--GVWVSEVMLQ 127
DIEDLFSE E +KIR LL WYD N+R+LPW + + + + +Q
Sbjct: 118 DIEDLFSENETQKIRMGLLDWYDVNKRDLPWRNRRSESEKERRAYEVWVSEIMLQQTRVQ 177
Query: 128 QTRVQTVIDYYNRWMTKWP----TIHHL-AKASLE----------EVNEMWAGLGYYRRA 172
T ++ + +W T + ++ +L S E EVNEMWAGLGYYRRA
Sbjct: 178 -TVMKYYKRWMQKWPTIYDLGQASLENLIVSRSRELSFLRGNEKKEVNEMWAGLGYYRRA 236
Query: 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLAR 232
RFLLEGAKM+VA +GFPN S L KV GIG YTAGAIASIAF E VPVVDGNVIRVLAR
Sbjct: 237 RFLLEGAKMVVAGTEGFPNQASSLMKVKGIGQYTAGAIASIAFNEAVPVVDGNVIRVLAR 296
Query: 233 LKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDK 292
LKAISANPKD T +NFWKLA QLVD RPGDFNQSLMELGA +CT P+C+SCPVS +
Sbjct: 297 LKAISANPKDRLTARNFWKLAAQLVDPSRPGDFNQSLMELGATLCTVSKPSCSSCPVSSQ 356
Query: 293 CQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKR 352
C+A+S+S+ + ++ VT YP KV+KA+ RHD CV+EI ER Q G F+LVKR
Sbjct: 357 CRAFSLSEENRTISVTDYPTKVIKAKPRHDFCCVCVLEI----HNLERNQSGGRFVLVKR 412
Query: 353 RDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSF--NLDPRNNCSIILREDVGEFV 410
++GLLAGLWEFPS+IL+ E D TRR A +LK++F +++ + C+I+ RE++GEFV
Sbjct: 413 PEQGLLAGLWEFPSVILNEEADSATRRNAINVYLKEAFRFHVELKKACTIVSREELGEFV 472
Query: 411 HIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKV 467
HIF+HIR KV+VELLV+ + GG + + Q K TL+WKCV L+++GLTS VRKV
Sbjct: 473 HIFTHIRRKVYVELLVVQLTGGTEDLFKGQAKDTLTWKCVSSDVLSTLGLTSAVRKV 529
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| MGI|MGI:1917853 Mutyh "mutY homolog (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-081104-193 mutyh "mutY homolog (E. coli)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RG99 MUTYH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BZT8 MUTYH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P514 MUTYH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E5KP25 MUTYH "A/G-specific adenine DNA glycosylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UIF7 MUTYH "A/G-specific adenine DNA glycosylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0270764 myh "monofunctional DNA glycosylase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| RGD|620045 Mutyh "mutY homolog (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4JRF4 | MUTYH_ARATH | 3, ., 2, ., 2, ., - | 0.6088 | 0.8174 | 0.6253 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.2.2.21 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.2.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 482 | |||
| COG1194 | 342 | COG1194, MutY, A/G-specific DNA glycosylase [DNA r | 1e-113 | |
| TIGR01084 | 275 | TIGR01084, mutY, A/G-specific adenine glycosylase | 1e-93 | |
| PRK10880 | 350 | PRK10880, PRK10880, adenine DNA glycosylase; Provi | 7e-65 | |
| cd00056 | 158 | cd00056, ENDO3c, endonuclease III; includes endonu | 9e-46 | |
| smart00478 | 149 | smart00478, ENDO3c, endonuclease III | 7e-37 | |
| PRK13910 | 289 | PRK13910, PRK13910, DNA glycosylase MutY; Provisio | 1e-31 | |
| pfam00730 | 144 | pfam00730, HhH-GPD, HhH-GPD superfamily base excis | 5e-30 | |
| COG0177 | 211 | COG0177, Nth, Predicted EndoIII-related endonuclea | 2e-23 | |
| cd03431 | 118 | cd03431, DNA_Glycosylase_C, DNA glycosylase (MutY | 6e-16 | |
| TIGR01083 | 191 | TIGR01083, nth, endonuclease III | 9e-12 | |
| smart00525 | 21 | smart00525, FES, iron-sulpphur binding domain in D | 1e-04 | |
| pfam00633 | 30 | pfam00633, HHH, Helix-hairpin-helix motif | 4e-04 |
| >gnl|CDD|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 338 bits (869), Expect = e-113
Identities = 140/353 (39%), Positives = 190/353 (53%), Gaps = 49/353 (13%)
Query: 74 LFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQT 133
S+ +++K +++LL WYDKN R+LPWRE K Y VWVSE+MLQQT+V T
Sbjct: 2 PKSDGDIEKFQEALLDWYDKNGRDLPWRE----------TKDPYRVWVSEIMLQQTQVAT 51
Query: 134 VIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNT 192
VI YY R++ ++PTI LA A +EV + W GLGYY RAR L + A+ +V G FP+
Sbjct: 52 VIPYYERFLERFPTIKALAAAPEDEVLKAWEGLGYYSRARNLHKAAQEVVERHGGEFPDD 111
Query: 193 VSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKL 252
+L +PG+G YTAGAI S AF + PV+DGNV RVL+RL AIS + T K W+L
Sbjct: 112 EEELAALPGVGPYTAGAILSFAFNQPEPVLDGNVKRVLSRLFAISGDIGKPKTKKELWEL 171
Query: 253 ATQLVD-SCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYP 311
A QL+ RPGDFNQ++M+LGA ICT P C+ CP+ D C AY R+ + YP
Sbjct: 172 AEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAY----RNGTPEK--YP 225
Query: 312 MKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDG 371
+K K + +A ++ DG +L KR ++GLL GLW FP
Sbjct: 226 VKKPKKKLPRRFAAFLIL------------NRDGEVLLEKRPEKGLLGGLWCFP------ 267
Query: 372 ETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVEL 424
+ + E +G F H F+H RL + +
Sbjct: 268 --QFEDEADLLDWLAADGLA-----------AEPLGAFRHTFTHFRLTIELRA 307
|
Length = 342 |
| >gnl|CDD|130156 TIGR01084, mutY, A/G-specific adenine glycosylase | Back alignment and domain information |
|---|
| >gnl|CDD|182805 PRK10880, PRK10880, adenine DNA glycosylase; Provisional | Back alignment and domain information |
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| >gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases | Back alignment and domain information |
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| >gnl|CDD|214684 smart00478, ENDO3c, endonuclease III | Back alignment and domain information |
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| >gnl|CDD|172427 PRK13910, PRK13910, DNA glycosylase MutY; Provisional | Back alignment and domain information |
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| >gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein | Back alignment and domain information |
|---|
| >gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|239523 cd03431, DNA_Glycosylase_C, DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone | Back alignment and domain information |
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| >gnl|CDD|130155 TIGR01083, nth, endonuclease III | Back alignment and domain information |
|---|
| >gnl|CDD|197771 smart00525, FES, iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3) | Back alignment and domain information |
|---|
| >gnl|CDD|109681 pfam00633, HHH, Helix-hairpin-helix motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| PRK10880 | 350 | adenine DNA glycosylase; Provisional | 100.0 | |
| COG1194 | 342 | MutY A/G-specific DNA glycosylase [DNA replication | 100.0 | |
| TIGR01084 | 275 | mutY A/G-specific adenine glycosylase. This equiva | 100.0 | |
| KOG2457 | 555 | consensus A/G-specific adenine DNA glycosylase [Re | 100.0 | |
| PRK13910 | 289 | DNA glycosylase MutY; Provisional | 100.0 | |
| COG0177 | 211 | Nth Predicted EndoIII-related endonuclease [DNA re | 100.0 | |
| PRK10702 | 211 | endonuclease III; Provisional | 100.0 | |
| TIGR01083 | 191 | nth endonuclease III. This equivalog model identif | 100.0 | |
| PRK13913 | 218 | 3-methyladenine DNA glycosylase; Provisional | 100.0 | |
| KOG1921 | 286 | consensus Endonuclease III [Replication, recombina | 100.0 | |
| COG2231 | 215 | Uncharacterized protein related to Endonuclease II | 99.97 | |
| smart00478 | 149 | ENDO3c endonuclease III. includes endonuclease III | 99.96 | |
| cd00056 | 158 | ENDO3c endonuclease III; includes endonuclease III | 99.95 | |
| PRK01229 | 208 | N-glycosylase/DNA lyase; Provisional | 99.92 | |
| TIGR00588 | 310 | ogg 8-oxoguanine DNA-glycosylase (ogg). All protei | 99.91 | |
| PF14815 | 114 | NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3 | 99.85 | |
| TIGR00586 | 128 | mutt mutator mutT protein. All proteins in this fa | 99.84 | |
| TIGR03252 | 177 | uncharacterized HhH-GPD family protein. This model | 99.84 | |
| cd03431 | 118 | DNA_Glycosylase_C DNA glycosylase (MutY in bacteri | 99.84 | |
| PRK10546 | 135 | pyrimidine (deoxy)nucleoside triphosphate pyrophos | 99.83 | |
| PRK10776 | 129 | nucleoside triphosphate pyrophosphohydrolase; Prov | 99.82 | |
| COG0122 | 285 | AlkA 3-methyladenine DNA glycosylase/8-oxoguanine | 99.79 | |
| PRK10308 | 283 | 3-methyl-adenine DNA glycosylase II; Provisional | 99.78 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 99.74 | |
| cd03425 | 124 | MutT_pyrophosphohydrolase The MutT pyrophosphohydr | 99.73 | |
| KOG2875 | 323 | consensus 8-oxoguanine DNA glycosylase [Replicatio | 99.69 | |
| PF00730 | 108 | HhH-GPD: HhH-GPD superfamily base excision DNA rep | 99.69 | |
| KOG1918 | 254 | consensus 3-methyladenine DNA glycosidase [Replica | 99.59 | |
| PRK15472 | 141 | nucleoside triphosphatase NudI; Provisional | 99.54 | |
| cd04676 | 129 | Nudix_Hydrolase_17 Members of the Nudix hydrolase | 99.49 | |
| PRK15434 | 159 | GDP-mannose mannosyl hydrolase NudD; Provisional | 99.49 | |
| cd04669 | 121 | Nudix_Hydrolase_11 Members of the Nudix hydrolase | 99.45 | |
| cd03427 | 137 | MTH1 MutT homolog-1 (MTH1) is a member of the Nudi | 99.44 | |
| cd04696 | 125 | Nudix_Hydrolase_37 Members of the Nudix hydrolase | 99.42 | |
| cd04684 | 128 | Nudix_Hydrolase_25 Contains a crystal structure of | 99.41 | |
| cd04673 | 122 | Nudix_Hydrolase_15 Members of the Nudix hydrolase | 99.38 | |
| cd04691 | 117 | Nudix_Hydrolase_32 Members of the Nudix hydrolase | 99.37 | |
| cd04699 | 129 | Nudix_Hydrolase_39 Members of the Nudix hydrolase | 99.36 | |
| cd04682 | 122 | Nudix_Hydrolase_23 Members of the Nudix hydrolase | 99.36 | |
| cd03430 | 144 | GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann | 99.35 | |
| cd04695 | 131 | Nudix_Hydrolase_36 Members of the Nudix hydrolase | 99.35 | |
| cd04679 | 125 | Nudix_Hydrolase_20 Members of the Nudix hydrolase | 99.34 | |
| cd04681 | 130 | Nudix_Hydrolase_22 Members of the Nudix hydrolase | 99.33 | |
| cd02883 | 123 | Nudix_Hydrolase Nudix hydrolase is a superfamily o | 99.33 | |
| cd04664 | 129 | Nudix_Hydrolase_7 Members of the Nudix hydrolase s | 99.32 | |
| cd03673 | 131 | Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy | 99.32 | |
| cd04678 | 129 | Nudix_Hydrolase_19 Members of the Nudix hydrolase | 99.32 | |
| PLN02325 | 144 | nudix hydrolase | 99.31 | |
| cd04683 | 120 | Nudix_Hydrolase_24 Members of the Nudix hydrolase | 99.3 | |
| PRK09438 | 148 | nudB dihydroneopterin triphosphate pyrophosphatase | 99.3 | |
| cd04670 | 127 | Nudix_Hydrolase_12 Members of the Nudix hydrolase | 99.3 | |
| cd03426 | 157 | CoAse Coenzyme A pyrophosphatase (CoAse), a member | 99.29 | |
| cd04667 | 112 | Nudix_Hydrolase_10 Members of the Nudix hydrolase | 99.28 | |
| cd04687 | 128 | Nudix_Hydrolase_28 Members of the Nudix hydrolase | 99.28 | |
| cd04671 | 123 | Nudix_Hydrolase_13 Members of the Nudix hydrolase | 99.27 | |
| cd04688 | 126 | Nudix_Hydrolase_29 Members of the Nudix hydrolase | 99.26 | |
| cd03675 | 134 | Nudix_Hydrolase_2 Contains a crystal structure of | 99.25 | |
| cd04661 | 132 | MRP_L46 Mitochondrial ribosomal protein L46 (MRP L | 99.25 | |
| cd04690 | 118 | Nudix_Hydrolase_31 Members of the Nudix hydrolase | 99.25 | |
| cd04680 | 120 | Nudix_Hydrolase_21 Members of the Nudix hydrolase | 99.24 | |
| cd04511 | 130 | Nudix_Hydrolase_4 Members of the Nudix hydrolase s | 99.23 | |
| cd03671 | 147 | Ap4A_hydrolase_plant_like Diadenosine tetraphospha | 99.22 | |
| PRK15393 | 180 | NUDIX hydrolase YfcD; Provisional | 99.22 | |
| cd04697 | 126 | Nudix_Hydrolase_38 Members of the Nudix hydrolase | 99.2 | |
| cd04700 | 142 | DR1025_like DR1025 from Deinococcus radiodurans, a | 99.2 | |
| cd03674 | 138 | Nudix_Hydrolase_1 Members of the Nudix hydrolase s | 99.19 | |
| cd04689 | 125 | Nudix_Hydrolase_30 Members of the Nudix hydrolase | 99.19 | |
| cd04694 | 143 | Nudix_Hydrolase_35 Members of the Nudix hydrolase | 99.16 | |
| PF00293 | 134 | NUDIX: NUDIX domain; InterPro: IPR000086 The gener | 99.14 | |
| cd03424 | 137 | ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) | 99.14 | |
| cd04672 | 123 | Nudix_Hydrolase_14 Members of the Nudix hydrolase | 99.12 | |
| TIGR02150 | 158 | IPP_isom_1 isopentenyl-diphosphate delta-isomerase | 99.12 | |
| cd04693 | 127 | Nudix_Hydrolase_34 Members of the Nudix hydrolase | 99.11 | |
| cd03428 | 130 | Ap4A_hydrolase_human_like Diadenosine tetraphospha | 99.09 | |
| cd02885 | 165 | IPP_Isomerase Isopentenyl diphosphate (IPP) isomer | 99.05 | |
| cd04692 | 144 | Nudix_Hydrolase_33 Members of the Nudix hydrolase | 99.05 | |
| cd04677 | 132 | Nudix_Hydrolase_18 Members of the Nudix hydrolase | 99.04 | |
| cd03429 | 131 | NADH_pyrophosphatase NADH pyrophosphatase, a membe | 99.02 | |
| cd03672 | 145 | Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt | 99.02 | |
| cd04666 | 122 | Nudix_Hydrolase_9 Members of the Nudix hydrolase s | 99.0 | |
| cd04686 | 131 | Nudix_Hydrolase_27 Members of the Nudix hydrolase | 98.99 | |
| cd04674 | 118 | Nudix_Hydrolase_16 Members of the Nudix hydrolase | 98.96 | |
| PRK00714 | 156 | RNA pyrophosphohydrolase; Reviewed | 98.95 | |
| cd04685 | 133 | Nudix_Hydrolase_26 Members of the Nudix hydrolase | 98.91 | |
| PRK03759 | 184 | isopentenyl-diphosphate delta-isomerase; Provision | 98.88 | |
| PRK05379 | 340 | bifunctional nicotinamide mononucleotide adenylylt | 98.86 | |
| PRK00241 | 256 | nudC NADH pyrophosphatase; Reviewed | 98.84 | |
| PRK11762 | 185 | nudE adenosine nucleotide hydrolase NudE; Provisio | 98.82 | |
| PRK10707 | 190 | putative NUDIX hydrolase; Provisional | 98.74 | |
| COG1051 | 145 | ADP-ribose pyrophosphatase [Nucleotide transport a | 98.69 | |
| cd04663 | 126 | Nudix_Hydrolase_6 Members of the Nudix hydrolase s | 98.66 | |
| COG1059 | 210 | Thermostable 8-oxoguanine DNA glycosylase [DNA rep | 98.64 | |
| cd03676 | 180 | Nudix_hydrolase_3 Members of the Nudix hydrolase s | 98.57 | |
| cd04662 | 126 | Nudix_Hydrolase_5 Members of the Nudix hydrolase s | 98.56 | |
| cd04665 | 118 | Nudix_Hydrolase_8 Members of the Nudix hydrolase s | 98.55 | |
| PLN02709 | 222 | nudix hydrolase | 98.47 | |
| PF00633 | 30 | HHH: Helix-hairpin-helix motif; InterPro: IPR00044 | 98.36 | |
| TIGR00052 | 185 | nudix-type nucleoside diphosphatase, YffH/AdpP fam | 98.32 | |
| TIGR02705 | 156 | nudix_YtkD nucleoside triphosphatase YtkD. The fun | 98.3 | |
| COG0494 | 161 | MutT NTP pyrophosphohydrolases including oxidative | 98.25 | |
| PLN02552 | 247 | isopentenyl-diphosphate delta-isomerase | 98.23 | |
| PLN02791 | 770 | Nudix hydrolase homolog | 98.07 | |
| PRK10729 | 202 | nudF ADP-ribose pyrophosphatase NudF; Provisional | 98.06 | |
| cd03670 | 186 | ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) | 97.9 | |
| PF10576 | 17 | EndIII_4Fe-2S: Iron-sulfur binding domain of endon | 97.6 | |
| KOG3069 | 246 | consensus Peroxisomal NUDIX hydrolase [Replication | 97.38 | |
| PRK15009 | 191 | GDP-mannose pyrophosphatase NudK; Provisional | 97.26 | |
| COG2816 | 279 | NPY1 NTP pyrophosphohydrolases containing a Zn-fin | 96.91 | |
| smart00525 | 26 | FES FES domain. iron-sulpphur binding domain in DN | 96.87 | |
| PLN03143 | 291 | nudix hydrolase; Provisional | 96.86 | |
| COG1443 | 185 | Idi Isopentenyldiphosphate isomerase [Lipid metabo | 96.15 | |
| KOG3084 | 345 | consensus NADH pyrophosphatase I of the Nudix fami | 96.11 | |
| KOG3041 | 225 | consensus Nucleoside diphosphate-sugar hydrolase o | 95.5 | |
| KOG2839 | 145 | consensus Diadenosine and diphosphoinositol polyph | 95.3 | |
| smart00278 | 26 | HhH1 Helix-hairpin-helix DNA-binding motif class 1 | 94.62 | |
| PF14716 | 68 | HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU | 93.96 | |
| KOG0648 | 295 | consensus Predicted NUDIX hydrolase FGF-2 and rela | 93.64 | |
| PLN02839 | 372 | nudix hydrolase | 92.42 | |
| PF09674 | 232 | DUF2400: Protein of unknown function (DUF2400); In | 92.27 | |
| TIGR02757 | 229 | conserved hypothetical protein TIGR02757. Members | 92.08 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 91.64 | |
| TIGR00426 | 69 | competence protein ComEA helix-hairpin-helix repea | 90.41 | |
| KOG4195 | 275 | consensus Transient receptor potential-related cha | 89.7 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 89.07 | |
| COG4119 | 161 | Predicted NTP pyrophosphohydrolase [DNA replicatio | 88.76 | |
| KOG4548 | 263 | consensus Mitochondrial ribosomal protein L17 [Tra | 88.55 | |
| PF05559 | 319 | DUF763: Protein of unknown function (DUF763); Inte | 83.42 | |
| COG4112 | 203 | Predicted phosphoesterase (MutT family) [General f | 83.24 | |
| TIGR00624 | 179 | tag DNA-3-methyladenine glycosylase I. This family | 82.44 | |
| PRK10353 | 187 | 3-methyl-adenine DNA glycosylase I; Provisional | 81.95 | |
| PF12836 | 65 | HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE | 81.11 | |
| PF03352 | 179 | Adenine_glyco: Methyladenine glycosylase; InterPro | 80.77 | |
| PRK14601 | 183 | ruvA Holliday junction DNA helicase RuvA; Provisio | 80.46 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 80.17 |
| >PRK10880 adenine DNA glycosylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-76 Score=599.74 Aligned_cols=341 Identities=35% Similarity=0.602 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHhhCCC-CCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHH
Q 011579 81 KKIRQSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEV 159 (482)
Q Consensus 81 ~~~~~~L~~wy~~~~r-~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel 159 (482)
..|.+.|++||..++| +||||.+ .|||++|||+||+|||++++|.++|.+|+++|||+++|++|++++|
T Consensus 4 ~~~~~~ll~W~~~~~r~~lpWr~~----------~dpy~ilVseILlQQT~v~~v~~~~~rl~~~fPt~~~La~a~~eel 73 (350)
T PRK10880 4 SQFSAQVLDWYDKYGRKTLPWQID----------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEV 73 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----------CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHCcCHHHHHCcCHHHH
Confidence 3689999999999997 8999985 5899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccC
Q 011579 160 NEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISA 238 (482)
Q Consensus 160 ~~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~ 238 (482)
+++|+++|||+||++|+++|+.|+++ +|.+|+++++|++|||||+|||++||+||||+++++||+||+||++|+++++.
T Consensus 74 ~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~TA~aIl~~af~~~~~iVD~nV~RV~~Rl~~i~~ 153 (350)
T PRK10880 74 LHLWTGLGYYARARNLHKAAQQVATLHGGEFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSG 153 (350)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHhCCCchhhHHHHhcCCCccHHHHHHHHHHHCCCCeecccHHHHHHHHHHhcccC
Confidence 99999999999999999999999987 88999999999999999999999999999999999999999999999998876
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccccc
Q 011579 239 NPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKAR 318 (482)
Q Consensus 239 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k 318 (482)
.+....+.+.+|++++.++|.+.+++||++||+||+.+|+|++|+|..|||++.|.+|+.+. ++.||+|++|++
T Consensus 154 ~~~~~~~~~~l~~~~~~l~p~~~~~~~nqalm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~------~~~~P~k~~k~~ 227 (350)
T PRK10880 154 WPGKKEVENRLWQLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQNGCIAYANHS------WALYPGKKPKQT 227 (350)
T ss_pred CCChHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhHHhccCCCCCCCCCccHhhhHHHHcCC------HhhCCCCCCCCC
Confidence 55555677789999999999999999999999999999999999999999999999999885 688999988877
Q ss_pred cceeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCc
Q 011579 319 QRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC 398 (482)
Q Consensus 319 ~~~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~ 398 (482)
.+.....+.|+ ..+|++|+.|||++|+|+||||||+.+ . ++.+...+ +++|+...
T Consensus 228 ~~~~~~~~~~~------------~~~~~~~l~~r~~~gl~~gl~~fP~~~--~-------~~~~~~~~-~~~~~~~~--- 282 (350)
T PRK10880 228 LPERTGYFLLL------------QHGDEVWLEQRPPSGLWGGLFCFPQFA--D-------EEELRQWL-AQRGIAAD--- 282 (350)
T ss_pred CCeEEEEEEEE------------EECCEEEEEECCccChhhccccCCCCc--c-------hhhHHHHH-HhcCCchh---
Confidence 77666665555 346899999999999999999999852 1 12233333 46776532
Q ss_pred ccccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccCC
Q 011579 399 SIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKSP 473 (482)
Q Consensus 399 ~~~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~~ 473 (482)
....+++++|+|||++|++++|.+.+ .+.... ....+..|++.+++.+++||++++|+++.+.-
T Consensus 283 ---~~~~~~~~~H~fTH~~~~~~~~~~~~--~~~~~~------~~~~~~~w~~~~~~~~~~~p~~~~k~l~~~~~ 346 (350)
T PRK10880 283 ---NLTQLTAFRHTFSHFHLDIVPMWLPV--SSFTGC------MDEGNGLWYNLAQPPSVGLAAPVERLLQQLRT 346 (350)
T ss_pred ---hhcccCceEEEEeeEEEEEEEEEEEc--cccccc------cCCcCCeEechHHhcccCCcHHHHHHHHHhcc
Confidence 12347899999999999999887642 211100 01124469999999999999999999987743
|
|
| >COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01084 mutY A/G-specific adenine glycosylase | Back alignment and domain information |
|---|
| >KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK13910 DNA glycosylase MutY; Provisional | Back alignment and domain information |
|---|
| >COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10702 endonuclease III; Provisional | Back alignment and domain information |
|---|
| >TIGR01083 nth endonuclease III | Back alignment and domain information |
|---|
| >PRK13913 3-methyladenine DNA glycosylase; Provisional | Back alignment and domain information |
|---|
| >KOG1921 consensus Endonuclease III [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00478 ENDO3c endonuclease III | Back alignment and domain information |
|---|
| >cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases | Back alignment and domain information |
|---|
| >PRK01229 N-glycosylase/DNA lyase; Provisional | Back alignment and domain information |
|---|
| >TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) | Back alignment and domain information |
|---|
| >PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A | Back alignment and domain information |
|---|
| >TIGR00586 mutt mutator mutT protein | Back alignment and domain information |
|---|
| >TIGR03252 uncharacterized HhH-GPD family protein | Back alignment and domain information |
|---|
| >cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone | Back alignment and domain information |
|---|
| >PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10308 3-methyl-adenine DNA glycosylase II; Provisional | Back alignment and domain information |
|---|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi) | Back alignment and domain information |
|---|
| >KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 | Back alignment and domain information |
|---|
| >KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK15472 nucleoside triphosphatase NudI; Provisional | Back alignment and domain information |
|---|
| >cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional | Back alignment and domain information |
|---|
| >cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function | Back alignment and domain information |
|---|
| >cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PLN02325 nudix hydrolase | Back alignment and domain information |
|---|
| >cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional | Back alignment and domain information |
|---|
| >cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes | Back alignment and domain information |
|---|
| >cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function | Back alignment and domain information |
|---|
| >cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >PRK15393 NUDIX hydrolase YfcD; Provisional | Back alignment and domain information |
|---|
| >cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities | Back alignment and domain information |
|---|
| >cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family [] | Back alignment and domain information |
|---|
| >cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate | Back alignment and domain information |
|---|
| >cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1 | Back alignment and domain information |
|---|
| >cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily | Back alignment and domain information |
|---|
| >cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway | Back alignment and domain information |
|---|
| >cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP | Back alignment and domain information |
|---|
| >cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex | Back alignment and domain information |
|---|
| >cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK00714 RNA pyrophosphohydrolase; Reviewed | Back alignment and domain information |
|---|
| >cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional | Back alignment and domain information |
|---|
| >PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional | Back alignment and domain information |
|---|
| >PRK00241 nudC NADH pyrophosphatase; Reviewed | Back alignment and domain information |
|---|
| >PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional | Back alignment and domain information |
|---|
| >PRK10707 putative NUDIX hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X | Back alignment and domain information |
|---|
| >PLN02709 nudix hydrolase | Back alignment and domain information |
|---|
| >PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] | Back alignment and domain information |
|---|
| >TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family | Back alignment and domain information |
|---|
| >TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD | Back alignment and domain information |
|---|
| >COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only] | Back alignment and domain information |
|---|
| >PLN02552 isopentenyl-diphosphate delta-isomerase | Back alignment and domain information |
|---|
| >PLN02791 Nudix hydrolase homolog | Back alignment and domain information |
|---|
| >PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional | Back alignment and domain information |
|---|
| >cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P | Back alignment and domain information |
|---|
| >PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4 | Back alignment and domain information |
|---|
| >KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK15009 GDP-mannose pyrophosphatase NudK; Provisional | Back alignment and domain information |
|---|
| >COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00525 FES FES domain | Back alignment and domain information |
|---|
| >PLN03143 nudix hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism] | Back alignment and domain information |
|---|
| >KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 | Back alignment and domain information |
|---|
| >PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A | Back alignment and domain information |
|---|
| >KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02839 nudix hydrolase | Back alignment and domain information |
|---|
| >PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides | Back alignment and domain information |
|---|
| >TIGR02757 conserved hypothetical protein TIGR02757 | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >TIGR00426 competence protein ComEA helix-hairpin-helix repeat region | Back alignment and domain information |
|---|
| >KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only] | Back alignment and domain information |
|---|
| >KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF05559 DUF763: Protein of unknown function (DUF763); InterPro: IPR008482 This family consists of several uncharacterised bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
| >COG4112 Predicted phosphoesterase (MutT family) [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00624 tag DNA-3-methyladenine glycosylase I | Back alignment and domain information |
|---|
| >PRK10353 3-methyl-adenine DNA glycosylase I; Provisional | Back alignment and domain information |
|---|
| >PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A | Back alignment and domain information |
|---|
| >PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 | Back alignment and domain information |
|---|
| >PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 482 | ||||
| 3n5n_X | 287 | Crystal Structure Analysis Of The Catalytic Domain | 8e-67 | ||
| 3fsp_A | 369 | Muty Adenine Glycosylase Bound To A Transition Stat | 3e-52 | ||
| 3g0q_A | 352 | Crystal Structure Of Muty Bound To Its Inhibitor Dn | 3e-52 | ||
| 1rrs_A | 369 | Muty Adenine Glycosylase In Complex With Dna Contai | 1e-51 | ||
| 1rrq_A | 369 | Muty Adenine Glycosylase In Complex With Dna Contai | 1e-51 | ||
| 1kg7_A | 225 | Crystal Structure Of The E161a Mutant Of E.coli Mut | 2e-44 | ||
| 1kg4_A | 225 | Crystal Structure Of The K142a Mutant Of E. Coli Mu | 2e-44 | ||
| 1muy_A | 225 | Catalytic Domain Of Muty From Escherichia Coli Leng | 3e-44 | ||
| 1kg5_A | 225 | Crystal Structure Of The K142q Mutant Of E.Coli Mut | 3e-44 | ||
| 1kg6_A | 225 | Crystal Structure Of The K142r Mutant Of E.Coli Mut | 3e-44 | ||
| 1wef_A | 225 | Catalytic Domain Of Muty From Escherichia Coli K20a | 5e-44 | ||
| 1mud_A | 225 | Catalytic Domain Of Muty From Escherichia Coli, D13 | 1e-43 | ||
| 1kqj_A | 225 | Crystal Structure Of A Mutant Of Muty Catalytic Dom | 6e-43 | ||
| 1kea_A | 221 | Structure Of A Thermostable Thymine-Dna Glycosylase | 2e-20 | ||
| 1orn_A | 226 | Structure Of A Trapped Endonuclease Iii-Dna Covalen | 2e-08 | ||
| 1p59_A | 226 | Structure Of A Non-Covalent Endonuclease Iii-Dna Co | 4e-08 | ||
| 1x51_A | 155 | Solution Structure Of The Nudix Domain From Human A | 3e-07 |
| >pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And Interdomain Connector Of Human Muty Homologue Length = 287 | Back alignment and structure |
|
| >pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog (1n) Paired With Dg In Duplexed Dna Length = 369 | Back alignment and structure |
| >pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna Length = 352 | Back alignment and structure |
| >pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An Abasic Site Length = 369 | Back alignment and structure |
| >pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An A:oxog Pair Length = 369 | Back alignment and structure |
| >pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core Fragment) Length = 225 | Back alignment and structure |
| >pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty (Core Fragment) Length = 225 | Back alignment and structure |
| >pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli Length = 225 | Back alignment and structure |
| >pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core Fragment) Length = 225 | Back alignment and structure |
| >pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core Fragment) Length = 225 | Back alignment and structure |
| >pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant Length = 225 | Back alignment and structure |
| >pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n Mutant Complexed To Adenine Length = 225 | Back alignment and structure |
| >pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain Length = 225 | Back alignment and structure |
| >pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase Length = 221 | Back alignment and structure |
| >pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent Intermediate: Estranged-Guanine Complex Length = 226 | Back alignment and structure |
| >pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex Length = 226 | Back alignment and structure |
| >pdb|1X51|A Chain A, Solution Structure Of The Nudix Domain From Human AG- Specific Adenine Dna Glycosylase Alpha-3 Splice Isoform Length = 155 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Length = 369 | Back alignment and structure |
|---|
Score = 404 bits (1039), Expect = e-139
Identities = 122/389 (31%), Positives = 191/389 (49%), Gaps = 48/389 (12%)
Query: 81 KKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNR 140
++ ++ LL W+ + +R+LPWR+ ++ Y VWVSEVMLQQTRV+TVI Y+ +
Sbjct: 14 REFQRDLLDWFARERRDLPWRK----------DRDPYKVWVSEVMLQQTRVETVIPYFEQ 63
Query: 141 WMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKV 199
++ ++PT+ LA A +EV + W GLGYY R R L K + G P+ + ++
Sbjct: 64 FIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRL 123
Query: 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259
G+G YT GA+ S+A+ P VDGNV+RVL+RL ++ + ST K F ++ +++
Sbjct: 124 KGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAY 183
Query: 260 CRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQ 319
PG FN++L+ELGA++CTP P+C CPV CQA++ P+K+ K
Sbjct: 184 ENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV------AEELPVKMKKTAV 237
Query: 320 RHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRR 379
+ A V+ +G ++ KR GLLA LWEFPS ETD +
Sbjct: 238 KQVPLAVAVLA-----------DDEGRVLIRKRDSTGLLANLWEFPSC----ETDGADGK 282
Query: 380 EAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEK 439
E E + + + L L E + F H FSH+ ++ V +
Sbjct: 283 EKLEQMVGEQYGLQVE------LTEPIVSFEHAFSHLVWQLTVFPGR----------LVH 326
Query: 440 QDKGTLSWKCVDGGTLASMGLTSGVRKVM 468
++ L + ++V
Sbjct: 327 GGPVEEPYRLAPEDELKAYAFPVSHQRVW 355
|
| >1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Length = 221 | Back alignment and structure |
|---|
| >1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Length = 225 | Back alignment and structure |
|---|
| >4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Length = 161 | Back alignment and structure |
|---|
| >1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3 Length = 155 | Back alignment and structure |
|---|
| >1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226 | Back alignment and structure |
|---|
| >1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 | Back alignment and structure |
|---|
| >2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211 | Back alignment and structure |
|---|
| >3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 | Back alignment and structure |
|---|
| >3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158 | Back alignment and structure |
|---|
| >3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Length = 214 | Back alignment and structure |
|---|
| >3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144 | Back alignment and structure |
|---|
| >2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 | Back alignment and structure |
|---|
| >3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153 | Back alignment and structure |
|---|
| >3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| 3fsp_A | 369 | A/G-specific adenine glycosylase; protein-DNA comp | 100.0 | |
| 3n5n_X | 287 | A/G-specific adenine DNA glycosylase; alpha-helice | 100.0 | |
| 1kg2_A | 225 | A/G-specific adenine glycosylase; DNA repair, hydr | 100.0 | |
| 1kea_A | 221 | Possible G-T mismatches repair enzyme; DNA repair, | 100.0 | |
| 1orn_A | 226 | Endonuclease III; DNA repair, DNA glycosylase, [4F | 100.0 | |
| 2abk_A | 211 | Endonuclease III; DNA-repair, DNA glycosylase; 1.8 | 100.0 | |
| 1pu6_A | 218 | 3-methyladenine DNA glycosylase; helix-hairpin-hel | 100.0 | |
| 4e9f_A | 161 | Methyl-CPG-binding domain protein 4; HHH DNA glyco | 99.97 | |
| 3fhg_A | 207 | Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel | 99.96 | |
| 3fhf_A | 214 | Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel | 99.95 | |
| 4b21_A | 232 | Probable DNA-3-methyladenine glycosylase 2; hydrol | 99.95 | |
| 2h56_A | 233 | DNA-3-methyladenine glycosidase; 10174367, EC 3.2. | 99.94 | |
| 3n0u_A | 219 | Probable N-glycosylase/DNA lyase; structural genom | 99.94 | |
| 2yg9_A | 225 | DNA-3-methyladenine glycosidase II, putative; hydr | 99.93 | |
| 3s6i_A | 228 | DNA-3-methyladenine glycosylase 1; DNA glycosylase | 99.93 | |
| 3i0w_A | 290 | 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- | 99.92 | |
| 2xhi_A | 360 | N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ | 99.9 | |
| 1x51_A | 155 | A/G-specific adenine DNA glycosylase; nudix domain | 99.9 | |
| 1mpg_A | 282 | ALKA, 3-methyladenine DNA glycosylase II; DNA repa | 99.89 | |
| 2jhn_A | 295 | ALKA, 3-methyladenine DNA-glycosylase; DNA repair, | 99.87 | |
| 3ees_A | 153 | Probable pyrophosphohydrolase; nudix, RNA pyrophos | 99.86 | |
| 3hhj_A | 158 | Mutator MUTT protein; niaid, ssgcid, decode, UW, S | 99.81 | |
| 2rrk_A | 140 | ORF135, CTP pyrophosphohydrolase; NMR {Escherichia | 99.79 | |
| 3r03_A | 144 | Nudix hydrolase; structural genomics, PSI2, protei | 99.79 | |
| 1mut_A | 129 | MUTT, nucleoside triphosphate pyrophosphohydrolase | 99.79 | |
| 3gwy_A | 140 | Putative CTP pyrophosphohydrolase; structural geno | 99.76 | |
| 3grn_A | 153 | MUTT related protein; structural genomics, hydrola | 99.75 | |
| 3exq_A | 161 | Nudix family hydrolase; protein structure initiati | 99.66 | |
| 3id9_A | 171 | MUTT/nudix family protein; hydrolase, protein stru | 99.66 | |
| 3oga_A | 165 | Nucleoside triphosphatase NUDI; salmonella enteric | 99.66 | |
| 3q93_A | 176 | 7,8-dihydro-8-oxoguanine triphosphatase; structura | 99.64 | |
| 2pbt_A | 134 | AP4A hydrolase; nudix protein, diadenosine polypho | 99.6 | |
| 2fkb_A | 180 | Putative nudix hydrolase YFCD; putative protein, M | 99.6 | |
| 1vcd_A | 126 | NDX1; nudix protein, diadenosine polyphosphate, AP | 99.59 | |
| 2b06_A | 155 | MUTT/nudix family protein; structural genomics, P | 99.58 | |
| 4dyw_A | 157 | MUTT/nudix family protein; structural genomics, ni | 99.58 | |
| 3i7u_A | 134 | AP4A hydrolase; nudix protein, diadenosine polypho | 99.55 | |
| 3fk9_A | 188 | Mutator MUTT protein; structural genomics, hydrola | 99.53 | |
| 1rya_A | 160 | GDP-mannose mannosyl hydrolase; GDP-glucose, nudix | 99.53 | |
| 1nqz_A | 194 | COA pyrophosphatase (MUTT/nudix family protein); D | 99.53 | |
| 2azw_A | 148 | MUTT/nudix family protein; MUTT/nudix ,enterococcu | 99.51 | |
| 1sjy_A | 159 | MUTT/nudix family protein; nudix fold, alpha-beta- | 99.5 | |
| 2o1c_A | 150 | DATP pyrophosphohydrolase; nudix NTP hydrolase NTP | 99.49 | |
| 2b0v_A | 153 | Nudix hydrolase; structural genomics, PSI, protein | 99.47 | |
| 1ktg_A | 138 | Diadenosine tetraphosphate hydrolase; nudix, AMP, | 99.47 | |
| 3gg6_A | 156 | Nudix motif 18, nucleoside diphosphate-linked moie | 99.46 | |
| 3eds_A | 153 | MUTT/nudix family protein; MUT/nudix protein, prot | 99.44 | |
| 1q27_A | 171 | Putative nudix hydrolase DR0079; radiation resista | 99.43 | |
| 3f6a_A | 159 | Hydrolase, nudix family; protein structure initiat | 99.41 | |
| 1k2e_A | 156 | Nudix homolog; nudix/MUTT-like fold, mixed alpha/b | 99.39 | |
| 3cng_A | 189 | Nudix hydrolase; structural genomics, APC7497, PSI | 99.38 | |
| 2pqv_A | 154 | MUTT/nudix family protein; structu genomics, PSI-2 | 99.38 | |
| 3e57_A | 211 | Uncharacterized protein TM1382; structural genomic | 99.38 | |
| 2yyh_A | 139 | MUTT domain, 8-OXO-DGTPase domain; nudix family pr | 99.37 | |
| 3o8s_A | 206 | Nudix hydrolase, ADP-ribose pyrophosphatase; struc | 99.37 | |
| 3f13_A | 163 | Putative nudix hydrolase family member; structural | 99.37 | |
| 3son_A | 149 | Hypothetical nudix hydrolase; structural genomics, | 99.35 | |
| 3shd_A | 153 | Phosphatase NUDJ; nudix fold, nudix motif, hydrola | 99.34 | |
| 1hzt_A | 190 | Isopentenyl diphosphate delta-isomerase; dimethyla | 99.29 | |
| 3u53_A | 155 | BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; | 99.26 | |
| 1v8y_A | 170 | ADP-ribose pyrophosphatase; nudix motif, loop-heli | 99.25 | |
| 1f3y_A | 165 | Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase | 99.25 | |
| 3i9x_A | 187 | MUTT/nudix family protein; structural genomics, hy | 99.24 | |
| 2yvp_A | 182 | NDX2, MUTT/nudix family protein; nudix protein, AD | 99.24 | |
| 1vk6_A | 269 | NADH pyrophosphatase; 1790429, structural genomics | 99.23 | |
| 2qjo_A | 341 | Bifunctional NMN adenylyltransferase/nudix hydrol; | 99.22 | |
| 3q1p_A | 205 | Phosphohydrolase (MUTT/nudix family protein); asym | 99.22 | |
| 2qjt_B | 352 | Nicotinamide-nucleotide adenylyltransferase; two i | 99.22 | |
| 2w4e_A | 145 | MUTT/nudix family protein; ADP-ribose pyrophosphat | 99.2 | |
| 2jvb_A | 146 | Protein PSU1, mRNA-decapping enzyme subunit 2; DCP | 99.16 | |
| 1vhz_A | 198 | ADP compounds hydrolase NUDE; structural genomics; | 99.13 | |
| 3h95_A | 199 | Nucleoside diphosphate-linked moiety X motif 6; NU | 99.12 | |
| 3fcm_A | 197 | Hydrolase, nudix family; protein structure initiat | 99.12 | |
| 1mk1_A | 207 | ADPR pyrophosphatase; nudix hydrolase, adprase, ad | 99.11 | |
| 1u20_A | 212 | U8 snoRNA-binding protein X29; modified nudix hydr | 99.1 | |
| 3gz5_A | 240 | MUTT/nudix family protein; DNA binding protein, nu | 99.09 | |
| 2fb1_A | 226 | Conserved hypothetical protein; structural genomic | 99.09 | |
| 2kdv_A | 164 | RNA pyrophosphohydrolase; nudix family, magnesium, | 99.0 | |
| 3fjy_A | 364 | Probable MUTT1 protein; dimer, protein structure i | 98.98 | |
| 2dho_A | 235 | Isopentenyl-diphosphate delta-isomerase 1; alpha/b | 98.94 | |
| 2a6t_A | 271 | SPAC19A8.12; alpha/beta/alpha, RNA binding protein | 98.93 | |
| 2pny_A | 246 | Isopentenyl-diphosphate delta-isomerase 2; caroten | 98.91 | |
| 3kvh_A | 214 | Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R | 98.9 | |
| 1g0s_A | 209 | Hypothetical 23.7 kDa protein in ICC-TOLC intergen | 98.89 | |
| 3o6z_A | 191 | GDP-mannose pyrophosphatase NUDK; nudix, hydrolase | 98.89 | |
| 2fvv_A | 194 | Diphosphoinositol polyphosphate phosphohydrolase 1 | 98.89 | |
| 2dsc_A | 212 | ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP | 98.84 | |
| 2fml_A | 273 | MUTT/nudix family protein; structural genomics, PS | 98.74 | |
| 3q91_A | 218 | Uridine diphosphate glucose pyrophosphatase; struc | 98.74 | |
| 3qsj_A | 232 | Nudix hydrolase; structural genomics, PSI-biology, | 98.49 | |
| 1q33_A | 292 | Pyrophosphatase, ADP-ribose pyrophosphatase; nudix | 98.49 | |
| 2xsq_A | 217 | U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp | 98.3 | |
| 3dup_A | 300 | MUTT/nudix family protein; nudix superfamily hydro | 98.18 | |
| 3bho_A | 208 | Cleavage and polyadenylation specificity factor su | 98.17 | |
| 3rh7_A | 321 | Hypothetical oxidoreductase; FMN-binding split bar | 97.79 | |
| 2edu_A | 98 | Kinesin-like protein KIF22; kinesin-like DNA bindi | 86.07 | |
| 2ihm_A | 360 | POL MU, DNA polymerase MU; helix-turn-helix, trans | 86.02 | |
| 2fmp_A | 335 | DNA polymerase beta; nucleotidyl transferase, tran | 84.63 | |
| 1jms_A | 381 | Terminal deoxynucleotidyltransferase; polymerase; | 84.45 | |
| 2bcq_A | 335 | DNA polymerase lambda; misalignment, extrahelical, | 83.68 | |
| 2duy_A | 75 | Competence protein comea-related protein; helix-ha | 83.63 | |
| 2ofk_A | 183 | 3-methyladenine DNA glycosylase I, constitutive; D | 81.21 | |
| 3vdp_A | 212 | Recombination protein RECR; zinc finger, DNA repai | 80.95 | |
| 2i5h_A | 205 | Hypothetical protein AF1531; PFAM:DUF655, PSI-2, s | 80.84 |
| >3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-77 Score=618.92 Aligned_cols=344 Identities=36% Similarity=0.666 Sum_probs=320.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHHH
Q 011579 82 KIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNE 161 (482)
Q Consensus 82 ~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~~ 161 (482)
.|.+.|++||+.++|++|||.. .|||++||++||+|||++++|.+++.+|+++|||+++|+++++++|.+
T Consensus 15 ~~~~~l~~w~~~~~r~lpw~~~----------~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~pt~~~la~a~~~~l~~ 84 (369)
T 3fsp_A 15 EFQRDLLDWFARERRDLPWRKD----------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLK 84 (369)
T ss_dssp HHHHHHHHHHHHHCCCCGGGSC----------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCC----------CChHHHHHHHHHhccCcHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
Confidence 5999999999999999999984 689999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCCC
Q 011579 162 MWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANP 240 (482)
Q Consensus 162 ~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~~ 240 (482)
+|+++|||+||++|+++|+.++++ +|.+|+++++|++|||||+|||++||+|+||+|+++||+||+|++.|+|+++.++
T Consensus 85 ~i~~~G~~~ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~ 164 (369)
T 3fsp_A 85 AWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDI 164 (369)
T ss_dssp TTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCT
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHHHHHHHcCcccCc
Confidence 999999999999999999999997 8899999999999999999999999999999999999999999999999988766
Q ss_pred CChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceecccccccccccc
Q 011579 241 KDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQR 320 (482)
Q Consensus 241 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k~~K~k~~ 320 (482)
....+.+.++..++.++|.+.|++||++||+||+.+|++++|+|+.|||++.|.+++.+. +..||+|++|++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~------~~~~PvK~~kk~~~ 238 (369)
T 3fsp_A 165 AKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV------AEELPVKMKKTAVK 238 (369)
T ss_dssp TSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTC------GGGCSCCCCCCCCE
T ss_pred cccchHHHHHHHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCC------cccCCccccccCcc
Confidence 556778899999999999999999999999999999999999999999999999999985 68999999998888
Q ss_pred eeeeeeEEEEEecCCCCCCcccCCCeEEEEecCCCCCCCcccccCccccCCCCChhhHHHHHHHHHHhhcCCCCCCCccc
Q 011579 321 HDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSI 400 (482)
Q Consensus 321 ~~~vav~Ii~~~~~~~~~~~~~~~gkvLl~KRp~~gllaGLWEFPggkve~~e~~~~~~~AL~rel~Eelgi~~~~~~~~ 400 (482)
.+.++++||. +.+|+||+.||+++|+|+|+||||||++|.| ++ ++|+.||+.||+|+++.
T Consensus 239 ~~~~~~~vi~-----------~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~---~~al~REl~EE~Gl~v~----- 298 (369)
T 3fsp_A 239 QVPLAVAVLA-----------DDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DG---KEKLEQMVGEQYGLQVE----- 298 (369)
T ss_dssp EEEEEEEEEE-----------CSSSEEEEEECCSSSTTTTCEECCEEECSSS-CT---HHHHHHHHTTSSSCCEE-----
T ss_pred eEEEEEEEEE-----------eCCCEEEEEECCCCCCcCCcccCCCcccCCC-Cc---HHHHHHHHHHHhCCcee-----
Confidence 8888888874 5689999999999999999999999999988 76 89999999999999986
Q ss_pred ccccccccEEEEcCceEEEEEEEEEEEEEeCCcccccccccCCCCeeeeeccCCcccCCCChHhHHHHhccC
Q 011579 401 ILREDVGEFVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKVMMGKS 472 (482)
Q Consensus 401 ~~~~~l~~v~H~fth~~l~L~~~~~~~~~~~~~~~~~~~~~~e~~~~~Wv~~~eL~~~~fp~a~~kil~~L~ 472 (482)
....++.+.|.|+|+++++++|.+. +.++ ..++.+++|++++++.+++||++++++++.+.
T Consensus 299 -~~~~l~~~~h~~~h~~~~~~~~~~~--~~~~--------~~e~~~~~Wv~~~el~~~~l~~~~~~il~~l~ 359 (369)
T 3fsp_A 299 -LTEPIVSFEHAFSHLVWQLTVFPGR--LVHG--------GPVEEPYRLAPEDELKAYAFPVSHQRVWREYK 359 (369)
T ss_dssp -ECCCCCEEEEECSSEEEEEEEEEEE--ECCS--------SCCCTTEEEEEGGGGGGSCCCHHHHHHHHHHH
T ss_pred -eecccccEEEEcceEEEEEEEEEEE--EcCC--------CCCccccEEeeHHHhhhCCCCHHHHHHHHHHH
Confidence 5568899999999999999999885 3432 15678899999999999999999999998873
|
| >3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A | Back alignment and structure |
|---|
| >1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 | Back alignment and structure |
|---|
| >1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* | Back alignment and structure |
|---|
| >2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 | Back alignment and structure |
|---|
| >1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* | Back alignment and structure |
|---|
| >4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A | Back alignment and structure |
|---|
| >3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* | Back alignment and structure |
|---|
| >4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* | Back alignment and structure |
|---|
| >2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A | Back alignment and structure |
|---|
| >3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A | Back alignment and structure |
|---|
| >2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... | Back alignment and structure |
|---|
| >1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3 | Back alignment and structure |
|---|
| >1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* | Back alignment and structure |
|---|
| >2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A | Back alignment and structure |
|---|
| >3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* | Back alignment and structure |
|---|
| >3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
| >2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0 | Back alignment and structure |
|---|
| >1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* | Back alignment and structure |
|---|
| >3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0 | Back alignment and structure |
|---|
| >3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} | Back alignment and structure |
|---|
| >3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} | Back alignment and structure |
|---|
| >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A | Back alignment and structure |
|---|
| >3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A | Back alignment and structure |
|---|
| >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 | Back alignment and structure |
|---|
| >1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* | Back alignment and structure |
|---|
| >2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 | Back alignment and structure |
|---|
| >4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A* | Back alignment and structure |
|---|
| >3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* | Back alignment and structure |
|---|
| >1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A | Back alignment and structure |
|---|
| >2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 | Back alignment and structure |
|---|
| >1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* | Back alignment and structure |
|---|
| >2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A | Back alignment and structure |
|---|
| >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 | Back alignment and structure |
|---|
| >1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* | Back alignment and structure |
|---|
| >3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A | Back alignment and structure |
|---|
| >3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
| >1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A | Back alignment and structure |
|---|
| >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|
| >2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} | Back alignment and structure |
|---|
| >3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} | Back alignment and structure |
|---|
| >3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A | Back alignment and structure |
|---|
| >1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* | Back alignment and structure |
|---|
| >3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A* | Back alignment and structure |
|---|
| >1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A | Back alignment and structure |
|---|
| >1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* | Back alignment and structure |
|---|
| >3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} | Back alignment and structure |
|---|
| >2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* | Back alignment and structure |
|---|
| >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A | Back alignment and structure |
|---|
| >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} | Back alignment and structure |
|---|
| >3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A | Back alignment and structure |
|---|
| >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B | Back alignment and structure |
|---|
| >2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* | Back alignment and structure |
|---|
| >3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
| >1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* | Back alignment and structure |
|---|
| >1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* | Back alignment and structure |
|---|
| >3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* | Back alignment and structure |
|---|
| >2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 | Back alignment and structure |
|---|
| >2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A | Back alignment and structure |
|---|
| >3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} | Back alignment and structure |
|---|
| >2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* | Back alignment and structure |
|---|
| >2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* | Back alignment and structure |
|---|
| >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens} | Back alignment and structure |
|---|
| >3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A | Back alignment and structure |
|---|
| >3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A | Back alignment and structure |
|---|
| >2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* | Back alignment and structure |
|---|
| >2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* | Back alignment and structure |
|---|
| >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 | Back alignment and structure |
|---|
| >3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* | Back alignment and structure |
|---|
| >2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A | Back alignment and structure |
|---|
| >3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} | Back alignment and structure |
|---|
| >3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A | Back alignment and structure |
|---|
| >3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... | Back alignment and structure |
|---|
| >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* | Back alignment and structure |
|---|
| >2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... | Back alignment and structure |
|---|
| >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 | Back alignment and structure |
|---|
| >2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* | Back alignment and structure |
|---|
| >3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D | Back alignment and structure |
|---|
| >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 482 | ||||
| d1rrqa1 | 221 | a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacil | 4e-46 | |
| d1kg2a_ | 224 | a.96.1.2 (A:) Catalytic domain of MutY {Escherichi | 8e-44 | |
| d1keaa_ | 217 | a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Me | 3e-41 | |
| d1orna_ | 214 | a.96.1.1 (A:) Endonuclease III {Escherichia coli [ | 7e-40 | |
| d2abka_ | 211 | a.96.1.1 (A:) Endonuclease III {Escherichia coli [ | 2e-30 | |
| d1pu6a_ | 217 | a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III | 2e-30 | |
| d1ngna_ | 144 | a.96.1.2 (A:) Mismatch-specific thymine glycosylas | 2e-25 | |
| d2noha1 | 190 | a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum | 2e-12 | |
| d1x51a1 | 142 | d.113.1.3 (A:8-149) A/G-specific adenine DNA glyco | 3e-08 | |
| d1rrqa2 | 127 | d.113.1.3 (A:234-360) Adenine glycosylase MutY, C- | 0.002 |
| >d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Length = 221 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA-glycosylase superfamily: DNA-glycosylase family: Mismatch glycosylase domain: Catalytic domain of MutY species: Bacillus stearothermophilus [TaxId: 1422]
Score = 158 bits (399), Expect = 4e-46
Identities = 90/235 (38%), Positives = 140/235 (59%), Gaps = 17/235 (7%)
Query: 81 KKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNR 140
++ ++ LL W+ + +R+LPWR K++ Y VWVSEVMLQQTRV+TVI Y+ +
Sbjct: 3 REFQRDLLDWFARERRDLPWR----------KDRDPYKVWVSEVMLQQTRVETVIPYFEQ 52
Query: 141 WMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKV 199
++ ++PT+ LA A +EV + W GLGYY R R L K + G P+ + ++
Sbjct: 53 FIDRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRL 112
Query: 200 PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDS 259
G+G YT GA+ S+A+ P V+GNV+RVL+RL ++ + ST K F ++ +++
Sbjct: 113 KGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAY 172
Query: 260 CRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKV 314
PG FN++L+ELGA++CTP P+C CPV CQA++ P+K+
Sbjct: 173 ENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV------AEELPVKM 221
|
| >d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Length = 224 | Back information, alignment and structure |
|---|
| >d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Length = 217 | Back information, alignment and structure |
|---|
| >d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 214 | Back information, alignment and structure |
|---|
| >d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
| >d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 | Back information, alignment and structure |
|---|
| >d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 | Back information, alignment and structure |
|---|
| >d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 | Back information, alignment and structure |
|---|
| >d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 142 | Back information, alignment and structure |
|---|
| >d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 127 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 482 | |||
| d1rrqa1 | 221 | Catalytic domain of MutY {Bacillus stearothermophi | 100.0 | |
| d1keaa_ | 217 | Thymine-DNA glycosylase {Archaeon Methanobacterium | 100.0 | |
| d1kg2a_ | 224 | Catalytic domain of MutY {Escherichia coli [TaxId: | 100.0 | |
| d1orna_ | 214 | Endonuclease III {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2abka_ | 211 | Endonuclease III {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1pu6a_ | 217 | 3-Methyladenine DNA glycosylase III (MagIII) {Heli | 100.0 | |
| d1ngna_ | 144 | Mismatch-specific thymine glycosylase domain of th | 99.95 | |
| d1rrqa2 | 127 | Adenine glycosylase MutY, C-terminal domain {Bacil | 99.92 | |
| d2noha1 | 190 | 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta | 99.91 | |
| d1x51a1 | 142 | A/G-specific adenine DNA glycosylase {Human (Homo | 99.91 | |
| d1puna_ | 129 | Nucleoside triphosphate pyrophosphorylase (MutT) { | 99.88 | |
| d1mpga1 | 183 | 3-Methyladenine DNA glycosylase II (gene alkA or a | 99.86 | |
| d2b06a1 | 155 | Hypothetical protein SP1235 (spr1115) {Streptococc | 99.57 | |
| d1irya_ | 156 | 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum | 99.55 | |
| d1vcda1 | 126 | AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: | 99.48 | |
| d1vk6a2 | 131 | NADH pyrophosphatase {Escherichia coli [TaxId: 562 | 99.44 | |
| d2b0va1 | 146 | Hypothetical protein NE0184 {Nitrosomonas europaea | 99.39 | |
| d1sjya_ | 158 | Hypothetical protein DR1025 {Deinococcus radiodura | 99.32 | |
| d1k2ea_ | 152 | Hypothetical protein PAE3301 {Archaeon Pyrobaculum | 99.28 | |
| d2fkba1 | 161 | Hypothetical protein YfcD {Escherichia coli [TaxId | 99.26 | |
| d1ryaa_ | 160 | GDP-mannose mannosyl hydrolase NudD {Escherichia c | 99.25 | |
| d2fb1a2 | 147 | Hypothetical protein BT0354, N-terminal domain {Ba | 99.2 | |
| d1jkna_ | 165 | Diadenosine tetraphosphate hydrolase (Ap4A hydrola | 99.19 | |
| d1nqza_ | 187 | Coenzyme A pyrophosphatase {Deinococcus radioduran | 99.18 | |
| d2o5fa1 | 162 | Hypothetical protein DR0079 {Deinococcus radiodura | 99.13 | |
| d1hzta_ | 153 | Isopentenyl diphosphate isomerase {Escherichia col | 99.13 | |
| d1ktga_ | 137 | Diadenosine tetraphosphate hydrolase (Ap4A hydrola | 99.11 | |
| d2a6ta2 | 151 | mRNA decapping enzyme Dcp2p catalytic domain {Schi | 99.11 | |
| d2azwa1 | 147 | Hypothetical protein EF1141 {Enterococcus faecalis | 99.08 | |
| d1xsba_ | 153 | Diadenosine tetraphosphate hydrolase (Ap4A hydrola | 99.05 | |
| d2fvva1 | 135 | Diphosphoinositol polyphosphate phosphohydrolase { | 99.04 | |
| d1v8ya_ | 158 | ADP-ribose pyrophosphatase {Thermus thermophilus [ | 98.8 | |
| d2fmla2 | 202 | Hypothetical protein EF2700, N-terminal domain {En | 98.69 | |
| d1vhza_ | 186 | ADP compounds hydrolase NudE {Escherichia coli [Ta | 98.65 | |
| d1mqea_ | 202 | ADP-ribose pyrophosphatase {Mycobacterium tubercul | 98.59 | |
| d1u20a1 | 196 | U8 snorna-binding protein x29 {African clawed frog | 98.47 | |
| d1g0sa_ | 209 | ADP-ribose pyrophosphatase {Escherichia coli [TaxI | 98.06 | |
| d1q33a_ | 292 | NUDT9 (mitochondrial ADP-ribose pyrophosphatase) { | 97.96 | |
| d1viua_ | 189 | ADP-ribose pyrophosphatase homologue YffH {Escheri | 97.22 | |
| d2fmpa1 | 82 | DNA polymerase beta, N-terminal (8 kD)-domain {Hum | 94.91 | |
| d2bcqa1 | 76 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 94.37 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 93.76 | |
| d1jmsa1 | 95 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 93.19 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 91.76 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 91.54 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 90.55 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 90.2 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 88.92 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 88.81 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 88.47 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 87.94 | |
| d2edua1 | 91 | KIF22, C-terminal domain {Human (Homo sapiens) [Ta | 86.65 | |
| d2duya1 | 65 | Uncharacterized protein TTHA1967 {Thermus thermoph | 85.84 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 85.79 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 84.72 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 84.45 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 83.93 | |
| d1nkua_ | 187 | 3-Methyladenine DNA glycosylase I (Tag) {Escherich | 81.04 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 80.94 | |
| d1vdda_ | 199 | Recombination protein RecR {Deinococcus radioduran | 80.94 | |
| d2axtu1 | 98 | Photosystem II 12 kDa extrinsic protein PsbU {Ther | 80.49 |
| >d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA-glycosylase superfamily: DNA-glycosylase family: Mismatch glycosylase domain: Catalytic domain of MutY species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=5.6e-56 Score=426.49 Aligned_cols=217 Identities=41% Similarity=0.834 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCcccchhhhhcCChHHHHHHHHHhhhccHHHHHHHHHHHHHhCCCHHHHHhCCHHHHH
Q 011579 81 KKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVN 160 (482)
Q Consensus 81 ~~~~~~L~~wy~~~~r~lpwr~~~~~~~~~~~~~dpf~~lVs~Il~Qqt~~~~v~~~~~~l~~~~pt~~~La~a~~eel~ 160 (482)
+.|++.|++||+.++|+||||+. .|||++||++||+|||++++|.+++.+|+++|||+++|+++++++|+
T Consensus 3 k~~~~~l~~wy~~~~r~lpWr~~----------~dp~~vLV~~iLsqqT~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~ 72 (221)
T d1rrqa1 3 REFQRDLLDWFARERRDLPWRKD----------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVL 72 (221)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGSC----------CCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCC----------CCHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcchHHHHHhhcHHHHH
Confidence 46999999999999999999984 68999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHc-CCCCCCchhhhhcCCCCcHHHHHHHHHhhcCCeeeeecCchhhhHHhhhcccCC
Q 011579 161 EMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISAN 239 (482)
Q Consensus 161 ~~i~~lG~~~RA~~L~~~a~~i~~~-~g~~p~~~~~L~~lpGIG~~TA~~il~fa~~~p~~~vD~~v~Rvl~Rl~~~~~~ 239 (482)
++|+++|||+||+++++.+..++++ +|.+|.++++|++|||||+|||++||+|+||+|+++||+||.||++|+|+++.+
T Consensus 73 ~~i~~~G~~~ra~~l~~~~~~~~~~~~G~vp~~~~~Ll~LpGIG~kTA~~il~~a~~~p~~~VDt~v~Rv~~Rl~~~~~~ 152 (221)
T d1rrqa1 73 KAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDD 152 (221)
T ss_dssp HHHTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHTTCCSC
T ss_pred hhhccchhhhhhHHHHHHHHHHhhhcCCCCchHHHHHHHHHHhhhHHHHHHHHHHhcCcccccCccHHHHHHHhhccCCC
Confidence 9999999999999999999999987 999999999999999999999999999999999999999999999999998765
Q ss_pred CCChHHHHHHHHHHHhhcCCCChhHHHHHHHHHhhhhccCCCCCCCCCCCcccChhhhccCCCCCcceeccccc
Q 011579 240 PKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMK 313 (482)
Q Consensus 240 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~~~~~~~P~k 313 (482)
.......+.++..+..++|.+.++++|++||+||+.+|++++|+|+.|||++.|++|+.+. ++.||+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~------~~~~P~k 220 (221)
T d1rrqa1 153 IAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGV------AEELPVK 220 (221)
T ss_dssp TTSTTHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTGGGCHHHHTTC------TTTCSCC
T ss_pred chhhhHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHcCCCCCCCCCCcChhhCHHhhcCC------chhcCCC
Confidence 5445567788888899999999999999999999999999999999999999999999985 5788987
|
| >d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
| >d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} | Back information, alignment and structure |
|---|
| >d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} | Back information, alignment and structure |
|---|
| >d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
| >d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|