Citrus Sinensis ID: 011602

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVVI
cccEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEccEEEEcccccEEEEEEEccEEEEEEEcccccccccccccccccccccccccccccccccEEEEcccEEEcccccEEEEcccEEEEEEcccccccccccHHHHHcccEEEEEccccHHccccHHHHHHHHHHHHHHcccEEEEEcccccccccEEEcccEEEEEcccEEEEccccccccccEEEEEEEcccccccccccccHHHHccccccccEEEEcccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHccccccccHHHHHHHHccc
ccEEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEccEEEEcccccHHHccccHHHHHHHHHHHHHHHccccccEEEEccccEEEccEEEEEEEEEEccEEEEEEEcHEcccccccccccccccccccccEEEccccHHHHHHccccccccccEEEEccccEEEEEHHHHHcccccccHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEcccEEEEEcccEEEEccccccccEEEEEEEEEHHHHHHHHHHcccHHHHHHccccccEEEEEEEccccccccccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHEEEEEcccccccHHHHHHHHHHHHHHccccEcccHHHHHHHHHHHHHHHHcccccEEEcccHHEEEEEc
MRLLKVATCNlnnwaldfdCNLKNIKESIGRAKEAgavirlgpeleitgygcedhfleLDTVTHAWECLKDLllgdwtdgilcsfgmpvikgseryncqvlclnrkiimirpklwlandgnyrELRWFTAWkqkdqledfqlpnEISVALKqksvpfgygfIQFLDTAVAAEICEelftpipphadlaLNGVEVFMnasgshhqlRKLDYRIRAFISAThsrggvymysnhqgcdggrlyfdgcscvvvngdmiaqgsqfslKDVEIVVAQVDLDAVAGFRGSISSFQeqascktkipsvavpynlcqpfnlkmslssplkinyhspeeeiafgpgcwlWDYLrrsgasgfllplsggadsssVAAIVGCMCQLVVKEISNGDEQVKADAIRighyangefptdsREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTltgkrpcykvapTLMKACVVI
MRLLKVATCnlnnwaldfdCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHyangefptdsrEFAKRIFYTVFmgsenssqETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTltgkrpcykvaptlmkacvvi
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVVI
**LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG**********LAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVV*
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVVI
MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS***********KKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVVI
*RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVVI
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MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKACVVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query481 2.2.26 [Sep-21-2011]
P38795 714 Glutamine-dependent NAD(+ yes no 0.972 0.655 0.504 1e-140
Q54ML1 713 Glutamine-dependent NAD(+ yes no 0.962 0.649 0.515 1e-140
Q5ZMA6 707 Glutamine-dependent NAD(+ yes no 0.972 0.661 0.498 1e-135
O74940 700 Putative glutamine-depend yes no 0.962 0.661 0.489 1e-132
Q711T7 725 Glutamine-dependent NAD(+ yes no 0.964 0.64 0.498 1e-132
Q3ZBF0 706 Glutamine-dependent NAD(+ yes no 0.972 0.662 0.492 1e-131
Q6IA69 706 Glutamine-dependent NAD(+ yes no 0.968 0.660 0.488 1e-130
Q4R5Y2 706 Glutamine-dependent NAD(+ N/A no 0.968 0.660 0.490 1e-130
Q812E8 725 Glutamine-dependent NAD(+ yes no 0.964 0.64 0.481 1e-128
Q9VYA0 787 Probable glutamine-depend yes no 0.970 0.593 0.436 1e-119
>sp|P38795|NADE_YEAST Glutamine-dependent NAD(+) synthetase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QNS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/472 (50%), Positives = 319/472 (67%), Gaps = 4/472 (0%)

Query: 3   LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
           L+ +ATCNLN WALDF+ N   I +SI  AKE GA +R+GPELEITGYGC DHFLE D  
Sbjct: 4   LITLATCNLNQWALDFEGNRDRILQSIKIAKERGARLRVGPELEITGYGCLDHFLENDVC 63

Query: 63  THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
            H+WE    ++    T G++   GMPV+  + RYNC++L L+ +I+ IRPK+WLANDGNY
Sbjct: 64  LHSWEMYAQIIKNKETHGLILDIGMPVLHKNVRYNCRLLSLDGEILFIRPKIWLANDGNY 123

Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIP 182
           RE+R+FT W +   +EDF LP EI     Q+ VPFG   I  LDT +  E CEELFTP  
Sbjct: 124 REMRFFTPWMKPGVVEDFILPPEIQKVTGQRLVPFGDAVINSLDTCIGTETCEELFTPQS 183

Query: 183 PHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFD 242
           PH  ++L+GVE+  N+SGSHH+LRKL+ R+   ++AT   GGVY+Y+N +GCDG RLY+D
Sbjct: 184 PHIAMSLDGVEIMTNSSGSHHELRKLNKRLDLILNATKRCGGVYLYANQRGCDGDRLYYD 243

Query: 243 GCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQAS-CKTKIPSVA 301
           GC+ + +NG ++AQGSQFSL DVE+V A VDL+ V  +R ++ S   QAS  + K   + 
Sbjct: 244 GCALIAINGTIVAQGSQFSLDDVEVVTATVDLEEVRSYRAAVMSRGLQASLAEIKFKRID 303

Query: 302 VPYNLCQPFNLKMSLSSPLKIN---YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGG 358
           +P  L    +       P K+    YHSPEEEIA GP CW+WDYLRR   +GF LPLSGG
Sbjct: 304 IPVELALMTSRFDPTVCPTKVREPFYHSPEEEIALGPACWMWDYLRRCNGTGFFLPLSGG 363

Query: 359 ADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418
            DS + A IV  MC+LV     NG+EQV  D  +I    +   P   ++ A +IF++ FM
Sbjct: 364 IDSCATAMIVHSMCRLVTDAAQNGNEQVIKDVRKITRSGDDWIPDSPQDLASKIFHSCFM 423

Query: 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKV 470
           G+ENSS+ETR  AK L++ IGS+H+D+ +D++VS+ +SLF+  TGK+P YK+
Sbjct: 424 GTENSSKETRNRAKDLSNAIGSYHVDLKMDSLVSSVVSLFEVATGKKPIYKI 475

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 1
>sp|Q54ML1|NADE_DICDI Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZMA6|NADE_CHICK Glutamine-dependent NAD(+) synthetase OS=Gallus gallus GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|O74940|NADE_SCHPO Putative glutamine-dependent NAD(+) synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.02 PE=3 SV=1 Back     alignment and function description
>sp|Q711T7|NADE_MOUSE Glutamine-dependent NAD(+) synthetase OS=Mus musculus GN=Nadsyn1 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZBF0|NADE_BOVIN Glutamine-dependent NAD(+) synthetase OS=Bos taurus GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|Q6IA69|NADE_HUMAN Glutamine-dependent NAD(+) synthetase OS=Homo sapiens GN=NADSYN1 PE=1 SV=3 Back     alignment and function description
>sp|Q4R5Y2|NADE_MACFA Glutamine-dependent NAD(+) synthetase OS=Macaca fascicularis GN=NADSYN1 PE=2 SV=1 Back     alignment and function description
>sp|Q812E8|NADE_RAT Glutamine-dependent NAD(+) synthetase OS=Rattus norvegicus GN=Nadsyn1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VYA0|NADE_DROME Probable glutamine-dependent NAD(+) synthetase OS=Drosophila melanogaster GN=CG9940 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
224053749 730 predicted protein [Populus trichocarpa] 0.977 0.643 0.859 0.0
449452230 720 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.652 0.861 0.0
449524932 720 PREDICTED: LOW QUALITY PROTEIN: glutamin 0.977 0.652 0.859 0.0
224075164 730 predicted protein [Populus trichocarpa] 0.977 0.643 0.855 0.0
356523661 731 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.642 0.846 0.0
356513255 731 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.642 0.840 0.0
297847854 725 carbon-nitrogen hydrolase family protein 0.977 0.648 0.823 0.0
15221990 725 NAD synthetase [Arabidopsis thaliana] gi 0.977 0.648 0.825 0.0
225426228 724 PREDICTED: glutamine-dependent NAD(+) sy 0.977 0.649 0.834 0.0
255555663546 glutamine-dependent NAD(+) synthetase, p 0.977 0.860 0.770 0.0
>gi|224053749|ref|XP_002297960.1| predicted protein [Populus trichocarpa] gi|222845218|gb|EEE82765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/470 (85%), Positives = 440/470 (93%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           MRLLKVATCNLN WA+DFDCNLKNIKESI +AK+AGAVIRLGPELEITGYGCEDHFLELD
Sbjct: 1   MRLLKVATCNLNQWAMDFDCNLKNIKESITQAKQAGAVIRLGPELEITGYGCEDHFLELD 60

Query: 61  TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
           T+ H WECLK++L+GDWTDGILCS GMPVIKGSERYNCQVLC NRKIIMIRPK+WLANDG
Sbjct: 61  TINHGWECLKEILVGDWTDGILCSIGMPVIKGSERYNCQVLCFNRKIIMIRPKMWLANDG 120

Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
           NYRELRWFTAWK KDQL DFQLP+EI+ A+ QKSV FGYG++QFLDTAVAAE+CEELFTP
Sbjct: 121 NYRELRWFTAWKHKDQLVDFQLPSEIAEAISQKSVHFGYGYVQFLDTAVAAEVCEELFTP 180

Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
           IPPHA+LALNGVEVFMNASGSHHQLRKLD R+RAFI ATH+ GGVYMYSNHQGCDGGRLY
Sbjct: 181 IPPHAELALNGVEVFMNASGSHHQLRKLDVRLRAFIGATHTCGGVYMYSNHQGCDGGRLY 240

Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
           +DGCSCVVVNG+++AQGSQFSL+D E+V+AQVDLDAVA  RGSISSFQEQAS K  + SV
Sbjct: 241 YDGCSCVVVNGEVVAQGSQFSLRDSEVVLAQVDLDAVASLRGSISSFQEQASYKNTVSSV 300

Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
            VPY LCQPF+++MSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD
Sbjct: 301 LVPYKLCQPFSMQMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360

Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS 420
           SSSVAAIVGCMCQLVVKEI NGDEQVKADAIRIG+Y +G+FPTDS+EFAKRIFYTVFMGS
Sbjct: 361 SSSVAAIVGCMCQLVVKEIDNGDEQVKADAIRIGNYTDGQFPTDSKEFAKRIFYTVFMGS 420

Query: 421 ENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKV 470
           ENSS++T+  AK+LADEIGSWHLDVSID VVSA LSLFQTLTGKRP YKV
Sbjct: 421 ENSSEDTKKRAKELADEIGSWHLDVSIDGVVSALLSLFQTLTGKRPRYKV 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449452230|ref|XP_004143863.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449524932|ref|XP_004169475.1| PREDICTED: LOW QUALITY PROTEIN: glutamine-dependent NAD(+) synthetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075164|ref|XP_002304569.1| predicted protein [Populus trichocarpa] gi|222842001|gb|EEE79548.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523661|ref|XP_003530455.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356513255|ref|XP_003525329.1| PREDICTED: glutamine-dependent NAD(+) synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|297847854|ref|XP_002891808.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337650|gb|EFH68067.1| carbon-nitrogen hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15221990|ref|NP_175906.1| NAD synthetase [Arabidopsis thaliana] gi|12321572|gb|AAG50835.1|AC073944_2 hypothetical protein [Arabidopsis thaliana] gi|38564264|gb|AAR23711.1| At1g55090 [Arabidopsis thaliana] gi|110736541|dbj|BAF00237.1| hypothetical protein [Arabidopsis thaliana] gi|332195063|gb|AEE33184.1| NAD synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225426228|ref|XP_002263774.1| PREDICTED: glutamine-dependent NAD(+) synthetase [Vitis vinifera] gi|297742398|emb|CBI34547.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555663|ref|XP_002518867.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] gi|223541854|gb|EEF43400.1| glutamine-dependent NAD(+) synthetase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
TAIR|locus:2205667 725 AT1G55090 [Arabidopsis thalian 0.977 0.648 0.825 3.8e-220
SGD|S000001116 714 QNS1 "Glutamine-dependent NAD( 0.972 0.655 0.504 5.9e-128
CGD|CAL0004651 714 orf19.1460 [Candida albicans ( 0.966 0.651 0.510 7.6e-128
UNIPROTKB|Q5ALW6 714 CaO19.1460 "Putative uncharact 0.966 0.651 0.510 7.6e-128
DICTYBASE|DDB_G0285877 713 nadsyn1 "glutamine-dependent N 0.972 0.656 0.517 2.6e-127
UNIPROTKB|Q5ZMA6 707 NADSYN1 "Glutamine-dependent N 0.972 0.661 0.498 1.3e-123
UNIPROTKB|F1P4D3 707 NADSYN1 "Glutamine-dependent N 0.972 0.661 0.498 1.7e-123
POMBASE|SPCC553.02 700 SPCC553.02 "glutamine-dependen 0.966 0.664 0.491 6.5e-122
MGI|MGI:1926164 725 Nadsyn1 "NAD synthetase 1" [Mu 0.964 0.64 0.498 2e-120
UNIPROTKB|Q3ZBF0 706 NADSYN1 "Glutamine-dependent N 0.972 0.662 0.492 6.7e-120
TAIR|locus:2205667 AT1G55090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2126 (753.4 bits), Expect = 3.8e-220, P = 3.8e-220
 Identities = 388/470 (82%), Positives = 436/470 (92%)

Query:     1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
             MRLLKVATCNLN WA+DF+ N+KNIK SI  AK AGAVIRLGPELE+TGYGCEDHFLELD
Sbjct:     1 MRLLKVATCNLNQWAMDFESNMKNIKASIAEAKAAGAVIRLGPELEVTGYGCEDHFLELD 60

Query:    61 TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
             TVTHAWECLK+LLLGDWTD ILCS GMPVIKG+ERYNCQVLC+NR+IIMIRPK+WLANDG
Sbjct:    61 TVTHAWECLKELLLGDWTDDILCSIGMPVIKGAERYNCQVLCMNRRIIMIRPKMWLANDG 120

Query:   121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
             NYRELRWFTAWKQ+++LE+FQLP EIS AL+QKSVPFGYG+IQF+DTAVAAE+CEELF+P
Sbjct:   121 NYRELRWFTAWKQREELEEFQLPIEISEALEQKSVPFGYGYIQFIDTAVAAEVCEELFSP 180

Query:   181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
             +PPHA+LALNGVEVFMNASGSHHQLRKLD R+ AF+ ATH+RGGVYMYSN QGCDG RLY
Sbjct:   181 LPPHAELALNGVEVFMNASGSHHQLRKLDIRLNAFMGATHARGGVYMYSNQQGCDGSRLY 240

Query:   241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
             +DGC+C+VVNG+++AQGSQFSL+DVE++++QVDLDAVA  RGSISSFQEQASCK K+ SV
Sbjct:   241 YDGCACIVVNGNVVAQGSQFSLRDVEVIISQVDLDAVASLRGSISSFQEQASCKVKVSSV 300

Query:   301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
             AVP  L Q FNLKM+LSSP KI YHSP+EEIAFGP CW+WDYLRRSGASGFLLPLSGGAD
Sbjct:   301 AVPCRLTQSFNLKMTLSSPKKIIYHSPQEEIAFGPACWMWDYLRRSGASGFLLPLSGGAD 360

Query:   361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS 420
             SSSVAAIVGCMCQLVVKEI+ GDEQVKADA RIG+YANG+FPTDS+EFAKRIFYTVFMGS
Sbjct:   361 SSSVAAIVGCMCQLVVKEIAKGDEQVKADANRIGNYANGQFPTDSKEFAKRIFYTVFMGS 420

Query:   421 ENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKV 470
             ENSS+ET+  +K+LADEIG+WHLDV ID VVSA LSLFQT+TGKRP YKV
Sbjct:   421 ENSSEETKRRSKQLADEIGAWHLDVCIDGVVSAVLSLFQTVTGKRPRYKV 470
GO:0003952 "NAD+ synthase (glutamine-hydrolyzing) activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0009435 "NAD biosynthetic process" evidence=IEA
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=RCA
SGD|S000001116 QNS1 "Glutamine-dependent NAD(+) synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0004651 orf19.1460 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ALW6 CaO19.1460 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285877 nadsyn1 "glutamine-dependent NAD(+) synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMA6 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4D3 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPCC553.02 SPCC553.02 "glutamine-dependent NAD(+) synthetase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
MGI|MGI:1926164 Nadsyn1 "NAD synthetase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBF0 NADSYN1 "Glutamine-dependent NAD(+) synthetase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54ML1NADE_DICDI6, ., 3, ., 5, ., 10.51570.96250.6493yesno
P38795NADE_YEAST6, ., 3, ., 5, ., 10.50420.97290.6554yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.5.10.824
3rd Layer6.3.50.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
PLN02339 700 PLN02339, PLN02339, NAD+ synthase (glutamine-hydro 0.0
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 1e-89
PRK02628 679 PRK02628, nadE, NAD synthetase; Reviewed 3e-32
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 4e-28
cd00553 248 cd00553, NAD_synthase, NAD+ synthase is a homodime 3e-26
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 2e-23
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 5e-19
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 8e-12
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 8e-10
pfam02540 242 pfam02540, NAD_synthase, NAD synthase 2e-09
TIGR00552 250 TIGR00552, nadE, NAD+ synthetase 2e-06
COG0171 268 COG0171, NadE, NAD synthase [Coenzyme metabolism] 3e-06
PRK00768268 PRK00768, nadE, NAD synthetase; Reviewed 4e-05
PRK13980 265 PRK13980, PRK13980, NAD synthetase; Provisional 7e-04
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 8e-04
>gnl|CDD|177973 PLN02339, PLN02339, NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information 
 Score =  966 bits (2499), Expect = 0.0
 Identities = 365/470 (77%), Positives = 406/470 (86%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           MRLLKVATCNLN WA+DFD NLK IKESI  AK AGAV R+GPELEITGYGCEDHFLELD
Sbjct: 1   MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELD 60

Query: 61  TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
           TVTH+WECL ++L+GD TDGILC  GMPVI G  RYNC+V CLNRKI++IRPK+WLANDG
Sbjct: 61  TVTHSWECLAEILVGDLTDGILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDG 120

Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
           NYRELRWFTAWK K ++EDFQLP EI+ A  QKSVPFG G++QFLDTAVAAE CEELFTP
Sbjct: 121 NYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDGYLQFLDTAVAAETCEELFTP 180

Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
             PH DLALNGVE+  N SGSHHQLRKL+ R+    SATH  GGVY+Y+N +GCDGGRLY
Sbjct: 181 QAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY 240

Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
           +DGC+C+VVNG+++AQGSQFSL+DVE+V A VDLDAV  FRGSISSF+EQAS K ++PSV
Sbjct: 241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSV 300

Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
           AVP+ LC PF+L +  SSPLKI YHSPEEEIA GP CWLWDYLRRSGASGFLLPLSGGAD
Sbjct: 301 AVPFKLCPPFSLSLVPSSPLKIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGAD 360

Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS 420
           SSSVAAIVG MCQLVVK I  GDEQVKADA RIG+YA+GE PTDS+EFAKRIFYTV+MGS
Sbjct: 361 SSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGS 420

Query: 421 ENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKV 470
           ENSS+ETR  AK+LADEIGS HLDV ID VVSA LSLFQTLTGKRP YKV
Sbjct: 421 ENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKV 470

Length = 700
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|238309 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|217093 pfam02540, NAD_synthase, NAD synthase Back     alignment and domain information
>gnl|CDD|233019 TIGR00552, nadE, NAD+ synthetase Back     alignment and domain information
>gnl|CDD|223249 COG0171, NadE, NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|234831 PRK00768, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 481
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
PLN02504346 nitrilase 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
PLN02798286 nitrilase 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
PRK13287333 amiF formamidase; Provisional 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.98
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.97
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 99.97
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 99.97
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.96
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.93
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.92
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.84
PRK13825388 conjugal transfer protein TraB; Provisional 99.83
PF02540 242 NAD_synthase: NAD synthase; InterPro: IPR022310 NA 99.75
PTZ00323 294 NAD+ synthase; Provisional 99.65
PRK00768 268 nadE NAD synthetase; Reviewed 99.63
COG0171 268 NadE NAD synthase [Coenzyme metabolism] 99.6
cd00553 248 NAD_synthase NAD+ synthase is a homodimer, which c 99.56
PRK13980 265 NAD synthetase; Provisional 99.5
PRK00876 326 nadE NAD synthetase; Reviewed 99.34
TIGR00552 250 nadE NAD+ synthetase. NAD+ synthetase is a nearly 99.2
COG1606 269 ATP-utilizing enzymes of the PP-loop superfamily [ 98.95
COG0482 356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 98.79
TIGR00268 252 conserved hypothetical protein TIGR00268. The N-te 98.77
PF03054 356 tRNA_Me_trans: tRNA methyl transferase; InterPro: 98.76
PLN02347 536 GMP synthetase 98.6
TIGR00884 311 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C 98.53
PRK14665 360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 98.44
PRK00074 511 guaA GMP synthase; Reviewed 98.38
COG0603 222 Predicted PP-loop superfamily ATPase [General func 98.37
PRK00919 307 GMP synthase subunit B; Validated 98.36
cd01997 295 GMP_synthase_C The C-terminal domain of GMP synthe 98.3
TIGR00420 352 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me 98.29
cd01996154 Alpha_ANH_like_III This is a subfamily of Adenine 98.28
PRK11106 231 queuosine biosynthesis protein QueC; Provisional 98.27
PRK04527 400 argininosuccinate synthase; Provisional 98.27
cd01990 202 Alpha_ANH_like_I This is a subfamily of Adenine nu 98.24
PRK14664 362 tRNA-specific 2-thiouridylase MnmA; Provisional 98.22
KOG2805 377 consensus tRNA (5-methylaminomethyl-2-thiouridylat 98.22
TIGR03573 343 WbuX N-acetyl sugar amidotransferase. This enzyme 98.22
TIGR00364 201 exsB protein. This protein family is represented b 98.19
cd01998 349 tRNA_Me_trans tRNA methyl transferase. This family 98.17
PRK00143 346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 98.17
PRK01565 394 thiamine biosynthesis protein ThiI; Provisional 98.12
PF06508 209 QueC: Queuosine biosynthesis protein QueC; InterPr 98.1
PRK13820 394 argininosuccinate synthase; Provisional 98.09
PRK00509 399 argininosuccinate synthase; Provisional 98.05
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 98.03
PF00733 255 Asn_synthase: Asparagine synthase; InterPro: IPR00 97.98
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 97.95
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 97.92
cd01991 269 Asn_Synthase_B_C The C-terminal domain of Asparagi 97.9
COG0519 315 GuaA GMP synthase, PP-ATPase domain/subunit [Nucle 97.85
PRK14561 194 hypothetical protein; Provisional 97.84
PLN00200 404 argininosuccinate synthase; Provisional 97.81
cd01713173 PAPS_reductase This domain is found in phosphoaden 97.8
TIGR00032 394 argG argininosuccinate synthase. argG in bacteria, 97.77
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 97.76
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 97.7
PRK08576 438 hypothetical protein; Provisional 97.67
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 97.67
PRK09431 554 asnB asparagine synthetase B; Provisional 97.66
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 97.66
PTZ00077 586 asparagine synthetase-like protein; Provisional 97.64
cd01999 385 Argininosuccinate_Synthase Argininosuccinate synth 97.64
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 97.59
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 97.54
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 97.49
cd01995169 ExsB ExsB is a transcription regulator related pro 97.47
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 97.45
PRK08384 381 thiamine biosynthesis protein ThiI; Provisional 97.42
PRK08349198 hypothetical protein; Validated 97.4
cd01712177 ThiI ThiI is required for thiazole synthesis in th 97.35
PF02568197 ThiI: Thiamine biosynthesis protein (ThiI); InterP 97.34
TIGR03679 218 arCOG00187 arCOG00187 universal archaeal metal-bin 97.34
PRK10696 258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 97.28
PRK05253 301 sulfate adenylyltransferase subunit 2; Provisional 97.26
PRK13795 636 hypothetical protein; Provisional 97.19
PRK13794 479 hypothetical protein; Provisional 97.03
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 96.93
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 96.92
PF01507174 PAPS_reduct: Phosphoadenosine phosphosulfate reduc 96.83
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 96.83
KOG1622 552 consensus GMP synthase [Nucleotide transport and m 96.78
PRK02090 241 phosphoadenosine phosphosulfate reductase; Provisi 96.62
PRK08557 417 hypothetical protein; Provisional 96.56
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 96.5
COG0137 403 ArgG Argininosuccinate synthase [Amino acid transp 96.43
PRK01269 482 tRNA s(4)U8 sulfurtransferase; Provisional 96.36
PRK05370 447 argininosuccinate synthase; Validated 96.32
TIGR00289 222 conserved hypothetical protein TIGR00289. Homologo 96.27
PF00764 388 Arginosuc_synth: Arginosuccinate synthase; InterPr 96.13
TIGR02039 294 CysD sulfate adenylyltransferase, small subunit. I 95.98
COG1365 255 Predicted ATPase (PP-loop superfamily) [General fu 95.78
COG0301 383 ThiI Thiamine biosynthesis ATP pyrophosphatase [Co 95.56
PRK12563 312 sulfate adenylyltransferase subunit 2; Provisional 95.56
TIGR00434 212 cysH phosophoadenylyl-sulfate reductase (thioredox 95.28
COG2117 198 Predicted subunit of tRNA(5-methylaminomethyl-2-th 94.91
TIGR02057 226 PAPS_reductase phosphoadenosine phosphosulfate red 94.81
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 93.73
KOG1706 412 consensus Argininosuccinate synthase [Amino acid t 93.68
COG0175 261 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr 93.49
PRK06850 507 hypothetical protein; Provisional 90.01
TIGR03183 447 DNA_S_dndC putative sulfurtransferase DndC. Member 89.42
TIGR00290 223 MJ0570_dom MJ0570-related uncharacterized domain. 89.31
COG2102 223 Predicted ATPases of PP-loop superfamily [General 87.45
PF01902 218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 85.6
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 83.89
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information 
Probab=100.00  E-value=4.5e-89  Score=745.64  Aligned_cols=476  Identities=77%  Similarity=1.259  Sum_probs=420.4

Q ss_pred             CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602            1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG   80 (481)
Q Consensus         1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~   80 (481)
                      |++||||++|++++.+|+++|+++|+++|++|+++|||||||||+++|||+++|++.+.++.+.+.+++++|++.+++++
T Consensus         1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~~~   80 (700)
T PLN02339          1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTHSWECLAEILVGDLTDG   80 (700)
T ss_pred             CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHHHHHHHHHHHhhcccCC
Confidence            88999999999999999999999999999999999999999999999999999998888888778899999999887889


Q ss_pred             eEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602           81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG  160 (481)
Q Consensus        81 i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~  160 (481)
                      +++++|+|+..++++|||++++.+|+|++.|+|+|||+|++|+|+|||+||+.....+.+.+|..+..+.|+..+|||+.
T Consensus        81 i~vvvG~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~  160 (700)
T PLN02339         81 ILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDG  160 (700)
T ss_pred             eEEEEeeeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCcc
Confidence            99999999888889999999999999999999999999999999999999985433345666666667777778999988


Q ss_pred             eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602          161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY  240 (481)
Q Consensus       161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~  240 (481)
                      +|+++++|||+.||||+|||+.++..++++|||||+||+++|+..||...|++++..+++..+++|||||++|.++++.+
T Consensus       161 ~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lv  240 (700)
T PLN02339        161 YLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY  240 (700)
T ss_pred             eeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceE
Confidence            99999999999999999999866656999999999999999999999889999999999998888899999997767799


Q ss_pred             eeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeeccccCCCccccCCCCCc
Q 011602          241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL  320 (481)
Q Consensus       241 f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (481)
                      |+|+|+|.|+|+++++++.|+++++++++++||+++++..|.+...+............+.++++++........+.+++
T Consensus       241 f~G~S~I~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (700)
T PLN02339        241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPL  320 (700)
T ss_pred             EcCceEEeCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCcc
Confidence            99999999999999999998754457999999999998888776665433221112233444454432111100134566


Q ss_pred             cCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCC
Q 011602          321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE  400 (481)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  400 (481)
                      +..++.|.|||++++++||||||+++|++|++||||||+|||++|+||+.||++++++++.|.++|.++++++.+....+
T Consensus       321 ~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~  400 (700)
T PLN02339        321 KIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGE  400 (700)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccc
Confidence            67788899999999999999999999999999999999999999999999999999999878999999999999887778


Q ss_pred             CCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhCCCCceeecCCcee
Q 011602          401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMK  476 (481)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (481)
                      .|.++.+||+++++||+||+.+||+.|+++|++||+.||++|++|||+++++++.++++..+|..|.|+++||+..
T Consensus       401 ~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~  476 (700)
T PLN02339        401 VPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNA  476 (700)
T ss_pred             cccchhhhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999854

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 Back     alignment and domain information
>PTZ00323 NAD+ synthase; Provisional Back     alignment and domain information
>PRK00768 nadE NAD synthetase; Reviewed Back     alignment and domain information
>COG0171 NadE NAD synthase [Coenzyme metabolism] Back     alignment and domain information
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) Back     alignment and domain information
>PRK13980 NAD synthetase; Provisional Back     alignment and domain information
>PRK00876 nadE NAD synthetase; Reviewed Back     alignment and domain information
>TIGR00552 nadE NAD+ synthetase Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 Back     alignment and domain information
>PLN02347 GMP synthetase Back     alignment and domain information
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK00074 guaA GMP synthase; Reviewed Back     alignment and domain information
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] Back     alignment and domain information
>PRK00919 GMP synthase subunit B; Validated Back     alignment and domain information
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase Back     alignment and domain information
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Back     alignment and domain information
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK11106 queuosine biosynthesis protein QueC; Provisional Back     alignment and domain information
>PRK04527 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03573 WbuX N-acetyl sugar amidotransferase Back     alignment and domain information
>TIGR00364 exsB protein Back     alignment and domain information
>cd01998 tRNA_Me_trans tRNA methyl transferase Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>PRK01565 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK00509 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B Back     alignment and domain information
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14561 hypothetical protein; Provisional Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK08576 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>PRK08384 thiamine biosynthesis protein ThiI; Provisional Back     alignment and domain information
>PRK08349 hypothetical protein; Validated Back     alignment and domain information
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway Back     alignment and domain information
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>PRK13794 hypothetical protein; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional Back     alignment and domain information
>PRK08557 hypothetical protein; Provisional Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>PRK05370 argininosuccinate synthase; Validated Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 Back     alignment and domain information
>TIGR02039 CysD sulfate adenylyltransferase, small subunit Back     alignment and domain information
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] Back     alignment and domain information
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] Back     alignment and domain information
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) Back     alignment and domain information
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK06850 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
3ilv_A 634 Crystal Structure Of A Glutamine-Dependent Nad(+) S 3e-34
3dla_A 680 X-ray Crystal Structure Of Glutamine-dependent Nad+ 1e-13
3sdb_A 680 Crystal Structure Of C176a Mutant Of Glutamine-Depe 1e-12
3n05_A 590 Crystal Structure Of Nh3-Dependent Nad+ Synthetase 9e-05
2pz8_A 284 Nad+ Synthetase From Bacillus Anthracis With Amp-Cp 1e-04
1nsy_A 271 Crystal Structure Of Nh3-dependent Nad+ Synthetase 4e-04
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+) Synthetase From Cytophaga Hutchinsonii Length = 634 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 197/475 (41%), Gaps = 63/475 (13%)
Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           +  +++    +N   +D++ N+KNI ++I  AK A   I   PEL ITGYGCED FL   
Sbjct: 3   LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62
Query: 61  TVTHAWE-CLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
               A E C +  +    TD I  S G+P       YNC  L  N  +     K +LAN+
Sbjct: 63  VAETAIEYCFE--IAASCTD-ITVSLGLPXRIAGITYNCVCLVENGIVKGFSAKQFLANE 119
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
           G + E RWFTAW  ++    F L N++         PFG       D  +  EICE+ + 
Sbjct: 120 GVHYETRWFTAWP-RNHTTTF-LYNDVKY-------PFGDVLYNVKDARIGFEICEDAWR 170
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239
                      G  + +N S SH    K   R    I  +      Y+Y+N  G + GR 
Sbjct: 171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRX 230
Query: 240 YFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPS 299
            +DG   +   G +I +  + S K+V ++ A +  D                       S
Sbjct: 231 IYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATD-----------------------S 267
Query: 300 VAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAF--GPGCWLWDYLRRSGASGFLLPLSG 357
              P  +    +L               E+E  F       L+DY R+S + GF+L LSG
Sbjct: 268 AETPETVLTQDDL---------------EKEFEFWEATSLGLFDYXRKSRSKGFVLSLSG 312
Query: 358 GADSSSVAAIVGCMCQLVVKE------ISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411
           GADSS+ A  V    +  +KE      +   + +   D   + H     F   +++    
Sbjct: 313 GADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPALQHLP---FEEQAKKITAV 369
Query: 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRP 466
              T +  + NS  ET   AK LA+ IG+   + S+D  +  + +  + +  +RP
Sbjct: 370 FLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVI-ERP 423
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+ Synthetase From Mycobacterium Tuberculosis Bound To Naad+ And Don Length = 680 Back     alignment and structure
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent Nad+ Synthetase From M. Tuberculosis In Apo Form Length = 680 Back     alignment and structure
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From Streptomyces Avermitilis Length = 590 Back     alignment and structure
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And Mg2+ Length = 284 Back     alignment and structure
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From Bacillus Subtilis Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 1e-156
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 1e-139
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 3e-44
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 2e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
3p52_A 249 NH(3)-dependent NAD(+) synthetase; structural geno 2e-08
3fiu_A 249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 6e-08
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 9e-08
1xng_A 268 NH(3)-dependent NAD(+) synthetase; amidotransferas 2e-07
1kqp_A 271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 6e-07
2e18_A 257 NH(3)-dependent NAD(+) synthetase; ligase, structu 9e-06
3dpi_A 285 NAD+ synthetase; ssgcid, decode, structural genomi 1e-05
3q4g_A 279 NH(3)-dependent NAD(+) synthetase; structural geno 1e-04
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 2e-04
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 2e-04
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
 Score =  458 bits (1180), Expect = e-156
 Identities = 116/473 (24%), Positives = 191/473 (40%), Gaps = 50/473 (10%)

Query: 1   MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
           +  +++    +N   +D++ N+KNI ++I  AK A   I   PEL ITGYGCED FL   
Sbjct: 3   LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62

Query: 61  TVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
               A E   ++        I  S G+P+      YNC  L  N  +     K +LAN+G
Sbjct: 63  VAETAIEYCFEIA--ASCTDITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEG 120

Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
            + E RWFTAW +          +  +        PFG       D  +  EICE+ +  
Sbjct: 121 VHYETRWFTAWPR---------NHTTTFLYNDVKYPFGDVLYNVKDARIGFEICEDAWRT 171

Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
                     G  + +N S SH    K   R    I  +      Y+Y+N  G + GR+ 
Sbjct: 172 DRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231

Query: 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV 300
           +DG   +   G +I +  + S K+V ++ A +  D+       ++               
Sbjct: 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLTQD------------- 278

Query: 301 AVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGAD 360
                                      E E        L+DY+R+S + GF+L LSGGAD
Sbjct: 279 -----------------------DLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGAD 315

Query: 361 SSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGH---YANGEFPTDSREFAKRIFYTVF 417
           SS+ A +V  M +  +KE+       K++   +       +  F   +++       T +
Sbjct: 316 SSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAY 375

Query: 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKV 470
             + NS  ET   AK LA+ IG+   + S+D  +  + +  + +  +   ++ 
Sbjct: 376 QSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEK 428
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} Length = 249 Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Length = 249 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268 Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Length = 271 Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Length = 257 Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} Length = 285 Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} Length = 279 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
1wxi_A 275 NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l 99.62
3q4g_A 279 NH(3)-dependent NAD(+) synthetase; structural geno 99.62
1kqp_A 271 NAD+ synthase, NH(3)-dependent NAD(+) synthetase, 99.58
3dpi_A 285 NAD+ synthetase; ssgcid, decode, structural genomi 99.57
3p52_A 249 NH(3)-dependent NAD(+) synthetase; structural geno 99.57
3fiu_A 249 NH(3)-dependent NAD(+) synthetase; rossman fold, a 99.53
1xng_A 268 NH(3)-dependent NAD(+) synthetase; amidotransferas 99.47
2e18_A 257 NH(3)-dependent NAD(+) synthetase; ligase, structu 99.31
2vxo_A 697 GMP synthase [glutamine-hydrolyzing]; proto-oncoge 98.8
1gpm_A 525 GMP synthetase, XMP aminase; class I glutamine ami 98.61
2dpl_A 308 GMP synthetase, GMP synthase [glutamine-hydrolyzin 98.55
3uow_A 556 GMP synthetase; structural genomics consortium, SG 98.46
2hma_A 376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 98.46
2ywb_A 503 GMP synthase [glutamine-hydrolyzing]; GMP syntheta 98.42
2pg3_A 232 Queuosine biosynthesis protein QUEC; YP_049261.1, 98.41
3tqi_A 527 GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 98.3
3bl5_A 219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 98.29
2der_A 380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 98.24
1vl2_A 421 Argininosuccinate synthase; TM1780, structural gen 98.22
3k32_A 203 Uncharacterized protein MJ0690; predicted subunit 98.07
2c5s_A 413 THII, probable thiamine biosynthesis protein THII; 97.97
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 97.97
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 97.96
1kor_A 400 Argininosuccinate synthetase; ligase, riken struct 97.95
1k92_A 455 Argininosuccinate synthase, argininosuccinate SY; 97.91
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 97.84
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 97.81
2nz2_A 413 Argininosuccinate synthase; amino-acid biosynthesi 97.76
3rjz_A 237 N-type ATP pyrophosphatase superfamily; structural 97.75
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 97.69
2o8v_A 252 Phosphoadenosine phosphosulfate reductase; disulfi 97.63
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 97.62
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 97.6
1vbk_A307 Hypothetical protein PH1313; structural genomics, 97.36
1zun_A 325 Sulfate adenylyltransferase subunit 2; beta barrel 97.18
2wsi_A 306 FAD synthetase; transferase, nucleotidyltransferas 97.06
2oq2_A 261 Phosphoadenosine phosphosulfate reductase; sulfate 97.05
2goy_A 275 Adenosine phosphosulfate reductase; iron sulfur cl 96.38
3fwk_A 308 FMN adenylyltransferase; FAD biosynthesis, alpha/b 94.73
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
Probab=100.00  E-value=2.4e-81  Score=683.06  Aligned_cols=420  Identities=28%  Similarity=0.426  Sum_probs=359.9

Q ss_pred             CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602            1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG   80 (481)
Q Consensus         1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~   80 (481)
                      |++||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++..+++.+.+.++|++|++++  .+
T Consensus         3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~--~~   80 (634)
T 3ilv_A            3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC--TD   80 (634)
T ss_dssp             -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--TT
T ss_pred             CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhC--CC
Confidence            6789999999999999999999999999999999999999999999999999999888888888888899999873  38


Q ss_pred             eEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602           81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG  160 (481)
Q Consensus        81 i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~  160 (481)
                      +++++|+|++.++++||+++++.+|++++.|+|+|||+|++|+|++||+||+.... +.+        ..++..+|||+.
T Consensus        81 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~~-~~~--------~~~g~~~p~g~~  151 (634)
T 3ilv_A           81 ITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHT-TTF--------LYNDVKYPFGDV  151 (634)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCE-EEE--------EETTEEEEEESC
T ss_pred             CEEEEeeeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCcccc-cee--------cccCcccccCCe
Confidence            99999999999999999999999999999999999999999999999999986411 111        135678899988


Q ss_pred             eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602          161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY  240 (481)
Q Consensus       161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~  240 (481)
                      +|+++++|||++||||+|||+.+++.++.+|||+|++||+||+..|+..+|..++++||++|+++||+||++|.++++.+
T Consensus       152 vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~  231 (634)
T 3ilv_A          152 LYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI  231 (634)
T ss_dssp             CEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCE
T ss_pred             EEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceE
Confidence            99999999999999999999768889999999999999999999998889999999999999999999999998877899


Q ss_pred             eeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeeccccCCCccccCCCCCc
Q 011602          241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL  320 (481)
Q Consensus       241 f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (481)
                      |+|+|+|+|+|+++++++.|+++++++++++||++.++..|.+.                      +             
T Consensus       232 f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~----------------------~-------------  276 (634)
T 3ilv_A          232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVL----------------------T-------------  276 (634)
T ss_dssp             EECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------------
T ss_pred             EcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcC----------------------C-------------
Confidence            99999999999999999999854578999999999887655421                      0             


Q ss_pred             cCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHH-----Hhcc
Q 011602          321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAI-----RIGH  395 (481)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~  395 (481)
                       ..++++.||++.++++||||||+|+|+++++||||||+|||++|+|++.||+++++++|  +++|.+++.     +++.
T Consensus       277 -~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG--~~~v~~~~~~~~~~~~~~  353 (634)
T 3ilv_A          277 -QDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELG--LTAFLQKSNMETLFDLPA  353 (634)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHTCGGGCCSSC
T ss_pred             -CCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhC--chhhhhhhhccccccccc
Confidence             11456789999999999999999999999999999999999999999999999999996  888887765     3433


Q ss_pred             CCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhCCCCcee
Q 011602          396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYK  469 (481)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~  469 (481)
                      ......|.+++++|+.+++|||||+.+|++.+.++|+++|+.||++|+++||+++++++.+.+...+|++|.|.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~  427 (634)
T 3ilv_A          354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWE  427 (634)
T ss_dssp             SSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTT
T ss_pred             ccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccc
Confidence            33333455789999999999999999999999999999999999999999999999999999999999887665
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* Back     alignment and structure
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 Back     alignment and structure
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A Back     alignment and structure
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 Back     alignment and structure
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 Back     alignment and structure
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} Back     alignment and structure
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Back     alignment and structure
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Back     alignment and structure
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Back     alignment and structure
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Back     alignment and structure
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 481
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 5e-17
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 4e-15
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 4e-14
d1kqpa_ 271 c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacil 2e-12
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 1e-11
d1wxia1 274 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase { 6e-08
d1xnga1 255 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase { 5e-06
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 79.3 bits (194), Expect = 5e-17
 Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 27/301 (8%)

Query: 2   RLLKVATCNLN--NWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL 59
           R + +A         A   +  +  + + + +A   GA   + PEL +T +    HF + 
Sbjct: 2   RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61

Query: 60  DTVTHAWECLKDLLLGDWTDGILCSFGMPV----------IKGSERYNCQVLCLNRKIIM 109
             +   +E      +           G+                 R+N  +L      I+
Sbjct: 62  AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121

Query: 110 -IRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTA 168
               K+ L     Y   R F   +++             V   +  +             
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRW----- 176

Query: 169 VAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228
                 E         A++   G     +            +     + A   + G +  
Sbjct: 177 -----PEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSA 231

Query: 229 SNHQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287
           +  +          G SC+V   G+++A  +     + E++ A VDLD     R  I +F
Sbjct: 232 AAGKAGMEENCMLLGHSCIVAPTGEIVALTTTL---EDEVITAAVDLDRCRELREHIFNF 288

Query: 288 Q 288
           +
Sbjct: 289 K 289
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Length = 271 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1xnga1 255 NH3-dependent NAD+-synthetase {Helicobacter pylori 99.68
d1kqpa_ 271 NH3-dependent NAD+-synthetase {Bacillus subtilis [ 99.63
d1wxia1 274 NH3-dependent NAD+-synthetase {Escherichia coli [T 99.45
d1gpma1197 GMP synthetase, central domain {Escherichia coli [ 98.9
d1jgta1 299 beta-Lactam synthetase {Streptomyces clavuligerus 98.19
d2pg3a1 230 Queuosine biosynthesis protein QueC {Erwinia carot 97.82
d1q15a1 296 beta-Lactam synthetase {Pectobacterium carotovorum 97.73
d1ni5a1 227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 97.72
d2c5sa1 218 Thiamine biosynthesis protein ThiI, C-terminal dom 97.65
d1j20a1165 Argininosuccinate synthetase, N-terminal domain {T 97.63
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 97.6
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 97.53
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 97.51
d1zuna1211 Sulfate adenylyltransferase subunit 2, CysD {Pseud 97.29
d1ct9a1 324 Asparagine synthetase B, C-terminal domain {Escher 97.18
d1sura_215 Phosphoadenylyl sulphate (PAPS) reductase {Escheri 96.04
d2d13a1 226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 95.41
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 93.85
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1e-46  Score=366.56  Aligned_cols=240  Identities=23%  Similarity=0.232  Sum_probs=206.9

Q ss_pred             ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhh-----hhHHHHHHHHHHhccc
Q 011602            3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDT-----VTHAWECLKDLLLGDW   77 (481)
Q Consensus         3 ~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~-----~~~~~~~l~~la~~~~   77 (481)
                      +||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||++.+.......     .....+.+.++|+   
T Consensus         1 ~~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---   77 (262)
T d1j31a_           1 MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLMELAR---   77 (262)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHHHH---
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhhHhhhhhhhcccCHHHHHHHHhhh---
Confidence            49999999999999999999999999999999999999999999999998764322111     1233445556655   


Q ss_pred             CCCeEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecc
Q 011602           78 TDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF  157 (481)
Q Consensus        78 ~~~i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpf  157 (481)
                      ++++++++|+++..++++||+++++++|++++.|+|+||+.    .|.+||.+|+...                      
T Consensus        78 ~~~i~i~~g~~~~~~~~~~n~~~~i~~g~~~~~y~K~~l~~----~e~~~~~~G~~~~----------------------  131 (262)
T d1j31a_          78 ELGLYIVAGTAEKSGNYLYNSAVVVGPRGYIGKYRKIHLFY----REKVFFEPGDLGF----------------------  131 (262)
T ss_dssp             HHTCEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCT----THHHHCCCCCSCS----------------------
T ss_pred             ccCceEEeeeeecccccccccceEEEeeeEEEEEeeeecCc----cCceeECCCCCCc----------------------
Confidence            48999999999999999999999999999999999999984    5788999997541                      


Q ss_pred             cceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCC
Q 011602          158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGG  237 (481)
Q Consensus       158 g~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~  237 (481)
                        .+|+++++|||++||+|+|||+ ..+.++.+|||+|++|+++.+..     +...+++||.+|++|++++|++|.+ +
T Consensus       132 --~v~~~~~~~ig~~IC~D~~~pe-~~~~~~~~ga~lil~p~~~~~~~-----~~~~~~~rA~en~~~vv~~n~~G~~-~  202 (262)
T d1j31a_         132 --KVFDIGFAKVGVMICFDWFFPE-SARTLALKGAEIIAHPANLVMPY-----APRAMPIRALENRVYTITADRVGEE-R  202 (262)
T ss_dssp             --CEEECSSCEEEECCGGGGGSHH-HHHHHHHTTCSEEEEECCCCSSC-----HHHHHHHHHHHHTCEEEEECCCSEE-T
T ss_pred             --eEEEeCCceEEEEEehhhhhhH-HHHHHHHhccccccCCccccccc-----chhhhhhhhhcccceEEEEeccccc-C
Confidence              5799999999999999999995 67899999999999999987643     3455788999999999999999988 7


Q ss_pred             ceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602          238 RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS  283 (481)
Q Consensus       238 ~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~  283 (481)
                      +..|.|+|+|+ |+|+++++++.++   +++++++||++.++..|.+
T Consensus       203 ~~~~~G~S~i~~p~G~~l~~~~~~~---e~i~~a~iDl~~~~~~r~~  246 (262)
T d1j31a_         203 GLKFIGKSLIASPKAEVLSIASETE---EEIGVVEIDLNLARNKRLN  246 (262)
T ss_dssp             TEECCCCCEEECTTSCEEEECCSSC---CEEEEEEECHHHHHCCEEE
T ss_pred             CccccCCCEEEeCCCCEEEEcCCCC---CEEEEEEEEcHHHHHHHHh
Confidence            78999999999 9999999998775   3799999999999876653
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure