Citrus Sinensis ID: 011621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
Protein Sequence
MEKEDLLMNEGVNSTPPTWSSCNFSSEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQNNNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQMNMNSSVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDENKSDSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mekedllmnegvnstpptwsscnfssekvitncclnpnwdysmdqsdpFEAALSSivsspaasnapttcsviipadgggdnVMIRELIGRLGsicnsgevlpqsyiqaqnnnnsntccystplnspplpklnlsmirgskssnnlpipaadpgFAERAARLSCFagsqmnmnssvsasdskklrvsrsstpesnnnadskegsslseqitsqtvtdsnprkrksiqrpkaketpptsdpkvvaenpedsnsmrskqdenksdssktkdnskpveppkdyihvrarrgqatdshsLAERVRREKISERMKFLQDLvpgcnkvtgkaVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDlfqscgyvqhslypgdcsvqtfpsryqpqqgshltssginnnaenqFSINALNSslhrnhniqlppinghgevgprvpslwdddLQSLVQMgfnqnqprslngsmaTTQMKIEM
Flexible Loop (DISEMBL)
mekedllmnegvnstpptwsscnfSSEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSspaasnaptTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQNNNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQmnmnssvsasdskklrvsrsstpesnnnadskegsslseqitsqtvtdsnprkrksiqrpkaketpptsdpkvvaenpedsnsmrskqdenksdssktkdnskpveppkdyihvrarrgqatdshslaervrREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGfnqnqprslngsmattqmkiem
Low Complexity Region (SEG)
MEKEDLLMNEGVNSTPPTWSSCNFSSEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQnnnnsnTCCYSTplnspplpklnlsMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQMNMNSSVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDEnksdssktkdnskPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM
Disordered region (IsUnstruct)
******************WSSCNFSSEKVITNCCLNPNWDYSM***********************TTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQN****NTCCY********************************************************************************************************************************************************************************************MKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTF*********************************************************LWD********************************
Disordered Region (DISOPRED)
*****LL******************************************************************************************************************************************************************************************************************************************************************************************************EKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMK*******************************************************************************************************LQSLV************************M
Disordered Region (DISEMBL)
*****************TWSSCNFSSEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQNNNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQMN********************************************************************************************************PPKDYIHVRA***********AERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSR*********TSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM
Disordered Region (DISPRO)
************NST*************VITNCCLN**WDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQNNNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCF*G*************************************************************************************************************PKDYIHVRARRGQ***SHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFN********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKEDLLMNEGVNSTPPTWSSCNFSSEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQNNNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQMNMNSSVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDENKSDSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	481	2.2.26 [Sep-21-2011]
Q9SRT2	456	Transcription factor bHLH	yes	no	0.885	0.934	0.412	3e-77
Q9FJL4	498	Transcription factor bHLH	no	no	0.889	0.859	0.383	3e-61
Q9LK48	371	Transcription factor bHLH	no	no	0.503	0.652	0.498	2e-60
Q9CAA9	486	Transcription factor bHLH	no	no	0.476	0.471	0.437	9e-51
Q9C670	390	Transcription factor bHLH	no	no	0.600	0.741	0.407	3e-48
Q6NKN9	366	Transcription factor bHLH	no	no	0.440	0.579	0.453	2e-43
Q8GY61	335	Transcription factor bHLH	no	no	0.309	0.444	0.571	8e-41
Q0JXE7	343	Transcription factor BPE	no	no	0.230	0.323	0.702	3e-39
Q9ZPW3	337	Transcription factor bHLH	no	no	0.288	0.412	0.573	8e-39
Q93W88	286	Transcription factor bHLH	no	no	0.216	0.363	0.742	3e-37

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 211/511 (41%), Positives = 287/511 (56%), Gaps = 85/511 (16%)

Query: 1   MEKEDLLMNEGVNSTPPTWSS----------CNFSSEKVITNCCLNPNWDYSMDQSDPFE 50
           ME E L MN GV S PP  +S           +  ++ V  +   N  W+ S +QS  F+
Sbjct: 1   MENE-LFMNAGV-SHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSI-FD 57

Query: 51  AALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQN 110
           +ALSS+VSSP  SN+  +   +     GG+NV++RELIG+LG+I   G++     I A N
Sbjct: 58  SALSSLVSSPTPSNSNFSVGGV-----GGENVIMRELIGKLGNI---GDIYG---ITASN 106

Query: 111 NNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQMN 170
            N+    CY+TP++SPP P    SM+  +K++  +   + DPGFAERAAR SCF     N
Sbjct: 107 GNS----CYATPMSSPP-PG---SMME-TKTTTPMAELSGDPGFAERAARFSCFGSRSFN 157

Query: 171 MNSSVSASDSKKLRVSRSSTPESNNN-------------ADSKEGSSLSEQITSQTVTDS 217
                          SR+++P   NN             + S     L+  + +   +  
Sbjct: 158 ---------------SRTNSPFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESSGE 202

Query: 218 NPRKRKSIQRPKAKETPPT--SDPKVVAENPEDSNSMRSKQDENKSDSSKTKDNSKPVEP 275
             RKRK+    K+K+  P+  S  K + E  EDS+  R K+ E   D +K+      ++P
Sbjct: 203 LSRKRKT----KSKQNSPSAVSSSKEIEEK-EDSDPKRCKKSEENGDKTKS------IDP 251

Query: 276 PKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYV 335
            KDYIHVRARRGQATDSHSLAERVRREKISERMK LQDLVPGCNKVTGKA+MLDEIINYV
Sbjct: 252 YKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYV 311

Query: 336 QSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQH--SLYPGDCSVQTFPSRY 393
           QSLQRQVEFLSMKL++VN R+D NM+ALLSKD+F S   + H   +   D S +T    +
Sbjct: 312 QSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLMHHQQVLQLDSSAETLLGDH 371

Query: 394 QPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQ 453
                 H  +  +N +  +   IN L +S  R+    LP +    +   +  +  +DDL 
Sbjct: 372 ------HNKNLQLNPDISSNNVINPLETSETRSFISHLPTLAHFTDSISQYSTFSEDDLH 425

Query: 454 SLVQMGFNQNQPRSLN-GS--MATTQMKIEM 481
           S++ MGF QN+ + LN GS     + MK E+
Sbjct: 426 SIIHMGFAQNRLQELNQGSSNQVPSHMKAEL 456

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  236 bits (602), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 197/514 (38%), Positives = 271/514 (52%), Gaps = 86/514 (16%)

Query: 5   DLLMNEGVNSTPPTWSSCNF------SSEKVITNCCLNPN--------WDYSMDQSDP-- 48
           +L MN      PP   + +F      SS  ++    ++PN        W+ S +Q     
Sbjct: 4   ELFMN--TEFPPPPEMATHFEHQQSSSSAMMLNWALMDPNPHQDSSFLWEKSTEQQQQQS 61

Query: 49  -FEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQ 107
            F++ALSS+VSSP  SN+  +        GGGD  +IRELIG+LG+I N+     + Y  
Sbjct: 62  IFDSALSSLVSSPTPSNSNFS-------GGGGDGFLIRELIGKLGNIGNNNNNSGEIYGT 114

Query: 108 AQNNNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGS 167
             + + S   CY+TP++SPP P  + S +  ++++  L   +ADPGFAERAAR SCF   
Sbjct: 115 PMSRSAS---CYATPMSSPPPPTNSNSQMMMNRTTP-LTEFSADPGFAERAARFSCFGSR 170

Query: 168 QMNMNSSVS----------ASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVTDS 217
             N  ++ +           +  K  RVS +   ++  + +   G   S           
Sbjct: 171 SFNGRTNTNLPINNGNNMVNNSGKLTRVSSTPALKALVSPEVTPGGEFS----------- 219

Query: 218 NPRKRKSIQRPKAKETP-PTSDP-----KVVAENPEDSNSMRSKQDENKSDSSKTK---- 267
             RKRKS+ + K+KE P  T+ P     K   +N     S  S++   K    +      
Sbjct: 220 --RKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDEEE 277

Query: 268 ---------DNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGC 318
                    +N+KP EPPKDYIHVRARRGQATDSHSLAERVRREKI ERMK LQDLVPGC
Sbjct: 278 EGEGEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGC 337

Query: 319 NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN-PRMDLNMEALLSKD-LFQSCGYVQ 376
           NKVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN  R+D N++AL+SKD +  S     
Sbjct: 338 NKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVMIPSSNNRL 397

Query: 377 HSLYPGDCSVQTFPSRYQPQQ-------GSHLTSSGINNNAENQFSINALNSSLHRNHNI 429
           H     +  +Q+  S +  QQ        S L  +  +NN   Q  +N+L +S       
Sbjct: 398 H-----EEGLQSKSSSHHHQQQLNIYNNNSQLLPNISSNNMMLQSPMNSLETSTLARSFT 452

Query: 430 QLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQN 463
            LP +    +   +     ++DLQS+V MG  +N
Sbjct: 453 HLPTLTQFTDSISQYQMFSEEDLQSIVGMGVAEN 486

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 143/287 (49%), Positives = 165/287 (57%), Gaps = 45/287 (15%)

Query: 214 VTDSNPRKRKSIQRPKAKETPPTS-----DPKVVAENPEDSNSMRSKQD---------EN 259
            T SN RKRKSI     KE+P +S     + KV  EN       RSKQD         E 
Sbjct: 109 TTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEK 168

Query: 260 KSDSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCN 319
                  KD++KP E PKDYIHVRARRGQATDSHSLAER RREKISERM  LQDLVPGCN
Sbjct: 169 CDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCN 228

Query: 320 KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSL 379
           ++TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM+ N  A LS ++ Q    +  SL
Sbjct: 229 RITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQPGESLTQSL 288

Query: 380 YPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGE 439
           Y   CS Q  PS Y                        +L  ++ R  + Q P  +G   
Sbjct: 289 YAMACSEQRLPSAYY-----------------------SLGKNMPRFSDTQFPSNDGF-- 323

Query: 440 VGPRVPSLWD-DDLQSLVQMGFN-----QNQPRSLNGSMATTQMKIE 480
           V    P  W+ +DLQS+VQMGF      Q+   + N S  T QMK+E
Sbjct: 324 VHTETPGFWENNDLQSIVQMGFGDILQQQSNNNNNNCSEPTLQMKLE 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  201 bits (512), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/288 (43%), Positives = 158/288 (54%), Gaps = 59/288 (20%)

Query: 150 ADPGFAERAARLSCFAGSQM---------------------------------------- 169
           AD GF ERAAR S F+G                                           
Sbjct: 128 ADSGFIERAARFSLFSGGNFSDMVNQPLGNSEAIGLFLQGGGTMQGQCQSNELNVGEPHN 187

Query: 170 NMNSSVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPK 229
           +++ +V  S  +    ++ + P S N ++  + S  + Q   +T +++  RKR   +  +
Sbjct: 188 DVSVAVKESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQKNSE 247

Query: 230 AKETPPTSDPKVVAENPEDSNSMRSKQDENKSDSSKTKDNS------KPVEPPKD-YIHV 282
           A ++  +      +E   D+N    + DE   +S   K NS      +  +PPKD YIHV
Sbjct: 248 AAQSHRSQQ----SEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHV 303

Query: 283 RARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQV 342
           RARRGQAT+SHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQV
Sbjct: 304 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQV 363

Query: 343 EFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFP 390
           EFLSMKLATVNP+MD N+E LL+KD  Q        L  G  S   FP
Sbjct: 364 EFLSMKLATVNPQMDFNLEGLLAKDALQ--------LRAGSSSTTPFP 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 179/324 (55%), Gaps = 35/324 (10%)

Query: 140 KSSNNLPIPA----------ADPGFAERAARLSCFAGSQMNMN---SSVSASDSKKLRVS 186
           + +NN+ IP           AD GF ERAA+ S F   +M MN   SS+   DS  L + 
Sbjct: 59  RGNNNIDIPLEMGWNMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQ 118

Query: 187 RSSTPESN--NNADSKEGSSLSEQITSQTVT-DSNPRKRKSIQRPKAKETPP----TSDP 239
            +  P  +  +N    + S L ++ +   V+ DS           K  +T      +   
Sbjct: 119 DTQIPSGSKLDNGPLTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKR 178

Query: 240 KVVAENPEDSNSMRSKQDEN-KSDSSKTKDNSKPVEPPKD-YIHVRARRGQATDSHSLAE 297
           K + ++ E+    + K +++  S+++KT    +P +  KD YIH+RARRGQAT+SHSLAE
Sbjct: 179 KRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAE 238

Query: 298 RVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMD 357
           RVRREKISERMKFLQDLVPGC+KVTGKAVMLDEIINYVQSLQ Q+EFLSMKL+ VNP +D
Sbjct: 239 RVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLD 298

Query: 358 LNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQG--------SHLTSSGINNN 409
            N+E+LL+KD  QS        +P + S+   P  Y  Q G          L S G+   
Sbjct: 299 FNLESLLAKDALQSSA----PTFPHNMSMLYPPVSYLSQTGFMQPNISSMSLLSGGLKRQ 354

Query: 410 AENQFSINALNSSLHRNHNIQLPP 433
             + +  +  N  +H NH     P
Sbjct: 355 ETHGYESDHHN-LVHMNHETGTAP 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 15/227 (6%)

Query: 148 PAADPGFA-ERAARLSCFAGSQMNMNSSVSASDSKKLRVSRSSTPESNNNADSKEGSSLS 206
           P +  GFA +  A L  F             SD K  R+ R+      ++          
Sbjct: 81  PGSVSGFAADMPASLLPFGDCGGGQIGHFLGSDKKGERLIRAGESSHEDH---------- 130

Query: 207 EQITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDEN-KSDSSK 265
            Q++   V  ++P  ++ +  P+A+        +   E+P+  N    K+ +N +S  + 
Sbjct: 131 HQVSDDAVLGASPVGKRRL--PEAESQWNKKAVEEFQEDPQRGNDQSQKKHKNDQSKETV 188

Query: 266 TKDNSKPVEPPKD-YIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGK 324
            K++S+  E PK+ YIH+RARRGQAT+SHSLAERVRREKISERM+ LQ+LVPGCNK+TGK
Sbjct: 189 NKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGK 248

Query: 325 AVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQS 371
           AVMLDEIINYVQSLQ+QVEFLSMKLATVNP ++++++ +L+KDL QS
Sbjct: 249 AVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQS 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  168 bits (426), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 116/161 (72%), Gaps = 12/161 (7%)

Query: 216 DSNPRKRK-SIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQ-----DEN--KSDSSKTK 267
           D N +K+K ++ R    E       K+  +N   + S++  +     +EN   +DSSK  
Sbjct: 102 DCNEKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKV- 160

Query: 268 DNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVM 327
             +K +E   DYIHVRARRGQATDSHS+AERVRREKISERMKFLQDLVPGC+K+TGKA M
Sbjct: 161 --TKELEKT-DYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGM 217

Query: 328 LDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDL 368
           LDEIINYVQSLQRQ+EFLSMKLA VNPR D +M+ + +K++
Sbjct: 218 LDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEV 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 91/111 (81%)

Query: 258 ENKSDSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPG 317
           E +S  ++T+   + +EP KDYIHVRARRGQATDSHSLAER RREKISERMK LQDLVPG
Sbjct: 112 EAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 171

Query: 318 CNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDL 368
           CNKV GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM+  +E    K++
Sbjct: 172 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKEV 222

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  161 bits (408), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/143 (57%), Positives = 99/143 (69%), Gaps = 4/143 (2%)

Query: 223 KSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQD----ENKSDSSKTKDNSKPVEPPKD 278
           K+ ++P+ K        K +    E  +SM+ K +    E  SD+SK            D
Sbjct: 122 KNKRKPEVKTREEQKTEKKIKVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLD 181

Query: 279 YIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSL 338
           YIHVRARRGQATD HSLAER RREKIS++MK+LQD+VPGCNKVTGKA MLDEIINYVQ L
Sbjct: 182 YIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCL 241

Query: 339 QRQVEFLSMKLATVNPRMDLNME 361
           QRQVEFLSMKLA +NP ++L +E
Sbjct: 242 QRQVEFLSMKLAVLNPELELAVE 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/105 (74%), Positives = 87/105 (82%), Gaps = 1/105 (0%)

Query: 250 NSMRSKQDENKSDSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMK 309
           NS  SK+      S K K  SK  EPP DYIHVRARRGQATDSHSLAERVRREKISERM+
Sbjct: 105 NSNNSKEGVEGRKSKKQKRGSKE-EPPTDYIHVRARRGQATDSHSLAERVRREKISERMR 163

Query: 310 FLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP 354
            LQ+LVPGC+KVTGKA+MLDEIINYVQ+LQ QVEFLSMKL +++P
Sbjct: 164 TLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISP 208

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
147786897	569	hypothetical protein VITISV_005183 [Viti	0.962	0.813	0.519	1e-140
359477937	569	PREDICTED: transcription factor bHLH62-l	0.966	0.817	0.523	1e-139
224128880	568	hypothetical protein POPTRDRAFT_572918 [	0.987	0.836	0.517	1e-135
255550670	534	transcription factor, putative [Ricinus	0.929	0.837	0.564	1e-135
449459842	546	PREDICTED: transcription factor bHLH78-l	0.925	0.815	0.462	1e-111
298205236	457	unnamed protein product [Vitis vinifera]	0.825	0.868	0.511	1e-110
255587658	554	transcription factor, putative [Ricinus	0.866	0.752	0.452	5e-98
224069890	563	predicted protein [Populus trichocarpa]	0.939	0.802	0.445	3e-92
356558973	548	PREDICTED: transcription factor bHLH62-l	0.912	0.801	0.440	6e-90
356503048	582	PREDICTED: transcription factor bHLH62-l	0.941	0.778	0.429	1e-88

>gi|147786897|emb|CAN73299.1| hypothetical protein VITISV_005183 [Vitis vinifera]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 305/587 (51%), Positives = 358/587 (60%), Gaps = 124/587 (21%)

Query: 1   MEKEDLLMNEGVNSTPPTWSSCNFSSE----------KVITNCCLNPNWDYSMDQSDPFE 50
           MEKE L MNEG  +TPP W   NF  E          + + NC LNPNWD SMDQSDPFE
Sbjct: 1   MEKERLFMNEGNCTTPPNW---NFGMEIQSNELNCSSQAVQNCFLNPNWDNSMDQSDPFE 57

Query: 51  AALSSIVSSPAASNAPTTCSVIIPADGG--GDNVMIRELIGRLGSICNSGEVLPQSYIQA 108
           +ALSSIVSSP  S+A           GG  GD++ IRELIGRLGSICNSGE+ PQSYI  
Sbjct: 58  SALSSIVSSPVGSSA-----------GGMPGDSIAIRELIGRLGSICNSGEISPQSYIGG 106

Query: 109 QNNNNSNTC----CYSTPLNSPPLPKLNLSM-------IRGSKSSNNLPI-PA-----AD 151
             + N+N      CY+TPLNSPP  KLNLS+       IR +  +N+LP  P+     AD
Sbjct: 107 GGHGNTNNSNNTSCYNTPLNSPP--KLNLSIMDHQQHQIRTNFPTNHLPTHPSLAPFPAD 164

Query: 152 PGFAERAARLSCF---------------------------------------AGSQMNMN 172
           PGFAERAAR SCF                                       AGSQ+   
Sbjct: 165 PGFAERAARFSCFGTGNFSGLSAQFGLNDTELPYRSSTGKLSRVSSNQSFKAAGSQLGAQ 224

Query: 173 S---------SVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVT-----DSN 218
                      VSASD K  ++SRSSTP++    DS+E SS+SEQI     +     D+N
Sbjct: 225 EFKDRSPPQDGVSASDKKLGKISRSSTPDNAELGDSREESSVSEQIPGGETSLKGQNDAN 284

Query: 219 PRKRKSIQRPKAKETP--PTSDPKVVAENPEDSNSMRSKQDENKS--------------- 261
            RKRKSI R KAKE P  P++    VA + ++SN+ RSK DE                  
Sbjct: 285 GRKRKSIPRGKAKEVPSSPSAKDAKVASDKDESNAKRSKPDEGSGSEKDAAKAKAEANGS 344

Query: 262 -------DSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDL 314
                  +  ++KDN KP E PKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDL
Sbjct: 345 TKSAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDL 404

Query: 315 VPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGY 374
           VPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMD NMEALLSK++FQS G 
Sbjct: 405 VPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLSKEIFQSRGS 464

Query: 375 VQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPI 434
           +  ++YP D S   FP  YQPQQG  L  +GI N  E  FS+N LNS++ R  ++ LP I
Sbjct: 465 LPQAMYPLDSSALAFPYGYQPQQGPSL-QNGIPNGTETPFSVNPLNSAIRRTSSM-LPSI 522

Query: 435 NGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM 481
           +G GE   +V + W+D+L S+VQMG  QNQP+   GSM   QMKIE+
Sbjct: 523 DGFGEAASQVSTFWEDELHSVVQMGIGQNQPQGFPGSMGAAQMKIEL 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477937|ref|XP_002264969.2| PREDICTED: transcription factor bHLH62-like [Vitis vinifera]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 306/585 (52%), Positives = 358/585 (61%), Gaps = 120/585 (20%)

Query: 1   MEKEDLLMNEGVNSTPPTWS--------SCNFSSEKVITNCCLNPNWDYSMDQSDPFEAA 52
           MEKE L MNEG   TPP W+          N SS+ V  NC LNPNWD SMDQSDPFE+A
Sbjct: 1   MEKERLFMNEGNCITPPNWNLGMEIQSNELNCSSQAV-QNCFLNPNWDNSMDQSDPFESA 59

Query: 53  LSSIVSSPAASNAPTTCSVIIPADGG--GDNVMIRELIGRLGSICNSGEVLPQSYIQAQN 110
           LSSIVSSP  S+A           GG  GD++ IRELIGRLGSICNSGE+ PQSYI    
Sbjct: 60  LSSIVSSPVGSSA-----------GGMPGDSIAIRELIGRLGSICNSGEISPQSYIGGGG 108

Query: 111 NNNSNTC----CYSTPLNSPPLPKLNLSM-------IRGSKSSNNLPI-PA-----ADPG 153
           + N+N      CY+TPLNSPP  KLNLS+       IR +  +N+LP  P+     ADPG
Sbjct: 109 HGNTNNSNNTSCYNTPLNSPP--KLNLSIMDHQQHQIRTNFPTNHLPTHPSLAPFPADPG 166

Query: 154 FAERAARLSCF---------------------------------------AGSQMNMNS- 173
           FAERAAR SCF                                       AGSQ+     
Sbjct: 167 FAERAARFSCFGTGNFSGLSAQFGLNDTELPYRSSTGKLSRVSSNQSFKAAGSQLGAQEF 226

Query: 174 --------SVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVT-----DSNPR 220
                    VSASD K  ++SRSSTP++    DS+E SS+SEQI     +     D+N R
Sbjct: 227 KDRSPPQDGVSASDKKLGKISRSSTPDNTELGDSREESSVSEQIPGGETSLKGQNDANGR 286

Query: 221 KRKSIQRPKAKETP--PTSDPKVVAENPEDSNSMRSKQDENKS----------------- 261
           KRKSI R KAKE P  P++    VA + ++SN+ RSK DE                    
Sbjct: 287 KRKSIPRGKAKEVPSSPSAKDAKVASDKDESNAKRSKPDEGSGSEKDAAKAKAEANGSTK 346

Query: 262 -----DSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVP 316
                +  ++KDN KP E PKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVP
Sbjct: 347 SAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVP 406

Query: 317 GCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQ 376
           GCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMD NMEALLSK++FQS G + 
Sbjct: 407 GCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLSKEIFQSRGSLP 466

Query: 377 HSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPING 436
            ++YP D S   FP  YQPQQG  L  +GI N  E  FS+N LNS++ R  ++ LP I+G
Sbjct: 467 QAMYPLDSSALAFPYGYQPQQGPSL-QNGIPNGTETPFSVNPLNSAIRRTSSM-LPSIDG 524

Query: 437 HGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM 481
            GE   +V + W+D+L S+VQMG  QNQP+   GSM   QMKIE+
Sbjct: 525 FGEAASQVSTFWEDELHSVVQMGIGQNQPQGFPGSMGAAQMKIEL 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128880|ref|XP_002320444.1| hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa] gi|222861217|gb|EEE98759.1| hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 297/574 (51%), Positives = 367/574 (63%), Gaps = 99/574 (17%)

Query: 1   MEKEDLLMNEGVNSTPPTWSSCNFSSE----------KVITNCCLNPNWDYSMDQSDPFE 50
           ME++ L ++EG N+    W+SC+F  E          + + NC LNPNWD S+DQSDPFE
Sbjct: 1   MERDKLFVSEGANTAATIWNSCSFGMEMQANELSCGPEKLANCFLNPNWDNSLDQSDPFE 60

Query: 51  AALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQN 110
           +ALSSIVSSP AS A    + I  A  GGD++MIRELIGRLG+ICNSG++  QS++   N
Sbjct: 61  SALSSIVSSPVASGANANANAIPNAGVGGDSLMIRELIGRLGNICNSGDISLQSFVNNNN 120

Query: 111 NNNSNTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIPA----ADPG-------FAERAA 159
           N+ + + CYSTP+NSP  PKLNLSM+  S+   NLPIP       PG       F ERAA
Sbjct: 121 NSTNTS-CYSTPMNSP--PKLNLSMM-DSQMRGNLPIPGNSVVKHPGLAPFPADFVERAA 176

Query: 160 RLSCFAGS-------QMNMNSS-----------------VSASDSKKLRV---------- 185
           R SCF  +       Q  +N S                 VS+++S K+ V          
Sbjct: 177 RYSCFGSNNPGGINKQFGLNESELINRLMPRVEPGKLSRVSSNNSMKVTVSQANVQESNK 236

Query: 186 --------------SRSSTPESNNNADSKEGSSLSEQI-----TSQTVTDSNPRKRKSIQ 226
                         SR S P ++ N DS+E SSLSEQ+     + ++  D+N RKRKSI 
Sbjct: 237 SSPQDGSLNSEKKFSRQSRPTTSENGDSREESSLSEQVPGGKLSMKSQNDANSRKRKSIP 296

Query: 227 RPKAKETPPT----SDPKVVAENPEDSNSMRSKQDE-NKSDSSKTKDN------------ 269
           R KAKETP +    SD KV AEN ++S + RSK DE N SD    K+             
Sbjct: 297 RGKAKETPSSSPSASDVKVAAEN-DESKAKRSKSDETNGSDKDTAKEKEEENGNQKQNKN 355

Query: 270 -SKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVML 328
            SKP EPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVML
Sbjct: 356 NSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVML 415

Query: 329 DEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQT 388
           DEIINYVQSLQRQVEFLSMKL++VNPRM++NME LLSKD+FQS G + HSLYP D S   
Sbjct: 416 DEIINYVQSLQRQVEFLSMKLSSVNPRMEINMETLLSKDIFQSRGSMPHSLYPLDASTPV 475

Query: 389 FPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGE-VGPRVPSL 447
           FP  YQ QQG  L  +G+ +NAE QFS+N LN++L RN ++ LP ++G G+    +  ++
Sbjct: 476 FPYGYQSQQGLALQ-NGMPSNAETQFSMNPLNAALRRNPSMHLPHLDGFGDPAALQASAM 534

Query: 448 WDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM 481
           W+DDLQS+VQMG+ QN   S  GS+ +T MKIE+
Sbjct: 535 WEDDLQSVVQMGYGQNHQESFQGSVPSTHMKIEL 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550670|ref|XP_002516384.1| transcription factor, putative [Ricinus communis] gi|223544482|gb|EEF46001.1| transcription factor, putative [Ricinus communis]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 306/542 (56%), Positives = 354/542 (65%), Gaps = 95/542 (17%)

Query: 1   MEKEDLLMNEGVNSTP-PTWSSCNFSSE---------KVITNCCLNPNWDYSMDQSDPFE 50
           MEKE L M+EGVNS   P W+SCNF  E           I N   N NW+ SMDQSDPFE
Sbjct: 1   MEKEKLFMSEGVNSREVPIWNSCNFGMEISSSNELNSDQIPNSFFNSNWENSMDQSDPFE 60

Query: 51  AALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQN 110
           +ALSSIVSSP A+  P +          GD VMIRELIGRLG+ICNS ++ PQSYI   N
Sbjct: 61  SALSSIVSSPNANAVPNS---------NGDPVMIRELIGRLGNICNSRDISPQSYINTNN 111

Query: 111 NNNSNTCCYSTPLNSPPLPKLNLSM----IRGSKSSNN---LPIPA-----ADPGFAERA 158
           NN++NT CY+TPLNSPP  KLN+S+    IRG+ ++NN   LPI +     ADPGF ERA
Sbjct: 112 NNSTNTSCYTTPLNSPP--KLNISILDSQIRGNTNTNNSHNLPIASLAPLPADPGFVERA 169

Query: 159 ARLSCFA--------------------------GSQMNMNSSVSA-------SDSKKLRV 185
           AR SCF                           GSQ+N ++   A       SD K   +
Sbjct: 170 ARFSCFGSSRNLSGLSGQFGSNESSFLSRIPATGSQVNASNVQQAVADGKPNSDRKLNVI 229

Query: 186 SRSSTPESNNNADSKEGSSLSEQITS-------QTVTDSNPRKRKSIQRPKAKETPPTS- 237
           SRSSTPE+    DS+E SSLSEQI         Q   D + RKRK+I R KAKETP +S 
Sbjct: 230 SRSSTPENAEFGDSREESSLSEQIPGGELSIKVQNNNDFSVRKRKAIPRGKAKETPSSSP 289

Query: 238 ---DPKVVAENPEDSNSMRSKQDE-NKSDSSKT---------KDNSKPVEPPKDYIHVRA 284
              D KV AE  E S + RSK DE N  D +K          KDN+K  EPPKDYIHVRA
Sbjct: 290 SASDVKVAAEKDE-STAKRSKSDEANGHDKAKAEQNGNQKQNKDNTKLPEPPKDYIHVRA 348

Query: 285 RRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF 344
           RRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF
Sbjct: 349 RRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF 408

Query: 345 LSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQ-TFPSRYQPQQGSHLTS 403
           LSMKLATVNPRMD+NMEA LSKD+FQS G + HSLYP D S     P  YQ QQG  L +
Sbjct: 409 LSMKLATVNPRMDVNMEA-LSKDVFQSFGSLPHSLYPLDSSAALALPYSYQSQQGVPLPN 467

Query: 404 SGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPR-VPSLWDDDLQSLVQMGFNQ 462
             +++NAE QFS+NAL   L RNH++QLPP++G G+   R V + W+++LQS+VQMGF Q
Sbjct: 468 D-MSSNAETQFSMNAL---LRRNHSMQLPPLDGFGDAAARQVSAFWEEELQSVVQMGFVQ 523

Query: 463 NQ 464
           NQ
Sbjct: 524 NQ 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459842|ref|XP_004147655.1| PREDICTED: transcription factor bHLH78-like [Cucumis sativus] gi|449525371|ref|XP_004169691.1| PREDICTED: transcription factor bHLH78-like [Cucumis sativus]

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 265/573 (46%), Positives = 327/573 (57%), Gaps = 128/573 (22%)

Query: 1   MEKEDLLMNEGVNSTPPTWSSCNFSSEKVITN------CCLNPNWDYSMDQSDPFEAALS 54
           MEKE   MN+G          C+F   ++  N        LNPNW+ SMD SD FE+ LS
Sbjct: 1   MEKE-FFMNDG---------GCSFYGMEIQPNELNSSGGLLNPNWENSMDHSDLFESTLS 50

Query: 55  SIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSICNSGEVLPQSYIQAQNNNNS 114
           SIVSSPA S+           D    N+M+RELIGRLGSICNSGE+ P SYI   NNN++
Sbjct: 51  SIVSSPANSHIIGGGGGGGGGD----NLMMRELIGRLGSICNSGEISPHSYIGGTNNNST 106

Query: 115 NTCCYSTPLNSPPLPKLNLSMIRGSKSSNNLPIP--------AADPGFAERAARLSCFAG 166
           NT CY+TPLNSP  PKLNLS I  S+   NL IP        + DPGFAERAAR SCF  
Sbjct: 107 NTSCYNTPLNSP--PKLNLSSIMESQIRGNL-IPHHQNLAPFSTDPGFAERAARFSCFGN 163

Query: 167 SQM-NMNSSVSASDSKKL-------------RVSRSSTPES------------------- 193
             +  +N  + ++++++L             ++SR S+ +S                   
Sbjct: 164 RNLGGLNGQLGSNETQELSNRSMAGAGVESGKLSRVSSNKSFNIGGVGSPQMVVQEGDQS 223

Query: 194 -------------------------NNNADSKEGSSLSEQ--ITSQTV---TDSNPRKRK 223
                                     N  DS+EGSS+SEQ  I    +    ++N RKRK
Sbjct: 224 PVQKGNSMPIPNKKVSNRFSRSSTPENAGDSREGSSVSEQNPIGESGLKGKAETNTRKRK 283

Query: 224 SIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDE---NKSDSSKTK------------- 267
           S+Q  +AK      D K   EN E  N  + K DE    + D +K K             
Sbjct: 284 SVQTGQAK------DVKAAVENHE-PNGKKIKPDEVTKKEIDGAKGKAEAKSSGDANQKQ 336

Query: 268 --DNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKA 325
             D+SKP EPPKDYIHVRARRGQATDSHSLAERVRREKIS+RMKFLQDLVPGCNKVTGKA
Sbjct: 337 NNDSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKA 396

Query: 326 VMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCS 385
           VMLDEIINYVQSLQRQVEFLSMKLATVNPRMD NME L+ KD+F+  G   H++YP D S
Sbjct: 397 VMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSSHTVYPMDSS 456

Query: 386 VQTFPSRYQPQQGSHLT--SSGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEV--G 441
           V  F   YQ     H+T   SGI N  E QFS+ + N  + RN + Q+   NG+ EV  G
Sbjct: 457 VPQFAYDYQSM---HVTPLHSGIPNGTEKQFSVASANDVMQRNLSGQM--TNGYNEVVNG 511

Query: 442 PRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMAT 474
            ++   W+D+L ++VQMG+ QNQ ++ N  M +
Sbjct: 512 IQISKFWEDELHTVVQMGYGQNQLQNANDEMKS 544

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205236|emb|CBI17295.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/487 (51%), Positives = 296/487 (60%), Gaps = 90/487 (18%)

Query: 26  SEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIR 85
           S + + NC LNPNWD SMDQSDPFE+ALSSIVSSP  S+                     
Sbjct: 11  SSQAVQNCFLNPNWDNSMDQSDPFESALSSIVSSPVGSSG-------------------- 50

Query: 86  ELIGRLGSICNSGEVLPQSYIQAQNNNNSNTCCYSTPLNSPPLPKLNLSM-------IRG 138
                                    NN++NT CY+TPLNSPP  KLNLS+       IR 
Sbjct: 51  ---------------------HGNTNNSNNTSCYNTPLNSPP--KLNLSIMDHQQHQIRT 87

Query: 139 SKSSNNLPI-PA-----ADPGFAERAARLSCFAGSQMNMNSSVSASDSKKLRVSRSSTPE 192
           +  +N+LP  P+     ADPGFAERAAR SCF     +  S+    +  +L   RSST  
Sbjct: 88  NFPTNHLPTHPSLAPFPADPGFAERAARFSCFGTGNFSGLSAQFGLNDTELPY-RSST-- 144

Query: 193 SNNNADSKEGSSLSEQITSQTVT-----DSNPRKRKSIQRPKAKETP--PTSDPKVVAEN 245
                DS+E SS+SEQI     +     D+N RKRKSI R KAKE P  P++    VA +
Sbjct: 145 GWKLGDSREESSVSEQIPGGETSLKGQNDANGRKRKSIPRGKAKEVPSSPSAKDAKVASD 204

Query: 246 PEDSNSMRSKQDENKS----------------------DSSKTKDNSKPVEPPKDYIHVR 283
            ++SN+ RSK DE                         +  ++KDN KP E PKDYIHVR
Sbjct: 205 KDESNAKRSKPDEGSGSEKDAAKAKAEANGSTKSAGDGNQKQSKDNPKPPEAPKDYIHVR 264

Query: 284 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 343
           ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE
Sbjct: 265 ARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 324

Query: 344 FLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTS 403
           FLSMKLATVNPRMD NMEALLSK++FQS G +  ++YP D S   FP  YQPQQG  L  
Sbjct: 325 FLSMKLATVNPRMDFNMEALLSKEIFQSRGSLPQAMYPLDSSALAFPYGYQPQQGPSL-Q 383

Query: 404 SGINNNAENQFSINALNSSLHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQN 463
           +GI N  E  FS+N LNS++ R  ++ LP I+G GE   +V + W+D+L S+VQMG  QN
Sbjct: 384 NGIPNGTETPFSVNPLNSAIRRTSSM-LPSIDGFGEAASQVSTFWEDELHSVVQMGIGQN 442

Query: 464 QPRSLNG 470
           QP+   G
Sbjct: 443 QPQGFPG 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587658|ref|XP_002534345.1| transcription factor, putative [Ricinus communis] gi|223525454|gb|EEF28039.1| transcription factor, putative [Ricinus communis]

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 228/504 (45%), Positives = 303/504 (60%), Gaps = 87/504 (17%)

Query: 23  NFSSEKVITNCCLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNV 82
           N SS   +++C  +PNW+ S DQS  F++ALSS+VSSPAASN+  +    I         
Sbjct: 48  NNSSSNHLSDCFYDPNWEKSTDQSLQFDSALSSMVSSPAASNSNISTESFI--------- 98

Query: 83  MIRELIGRLGSICNSGEVLPQSY------------IQAQNNNNSNTCCYSTPLNSPPLPK 130
            IRELIG+LG++ ++GE+ P S             I    NN++NT CY+TPL+SPP  K
Sbjct: 99  -IRELIGKLGNVGSTGEISPHSQPMLAASYNNKNSITGTGNNSTNTSCYTTPLSSPP--K 155

Query: 131 LNLSMIRGSKSSNNLPIP----------AADPGFAERAARLSCFAG-------SQMNMNS 173
           LN+S       ++ L  P           ADPGFAERAAR SCF         SQ  +N 
Sbjct: 156 LNMS------PTDQLSTPLALNSSVAEFTADPGFAERAARFSCFGSRSFNGRTSQFGLNK 209

Query: 174 -------------------SVSASDSKKLRVSRSSTPESNN-----NADSKEGSSLSEQI 209
                              S+ A  S   + +++S+P   +     N+ S+E SS+SEQ 
Sbjct: 210 LEMQLMGNANKLPRVSSTPSLKAVGSHHQKGNKNSSPLLQDRSELANSTSQEESSVSEQ- 268

Query: 210 TSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSK---------QDENK 260
            +    + N +KRK+  + K+KE P  +  K  AE  ++SN+ RSK         ++E+K
Sbjct: 269 -NPPNAELNSKKRKTAPKAKSKEAPQPNSAKD-AEVDDNSNAKRSKGNEKNDVKAEEEHK 326

Query: 261 S--DSSKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGC 318
              D  + K ++KP EPPKDYIHVRARRGQATDSHSLAERVRREKISERMK LQDLVPGC
Sbjct: 327 GNGDDKQNKASTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGC 386

Query: 319 NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHS 378
           NKVTGKA+MLDEIINYVQSLQRQVEFLSMKLA+VN R+D+N++ L+SKD+FQ+   + H 
Sbjct: 387 NKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDINLDTLMSKDIFQTTNQLPHP 446

Query: 379 LYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPINGHG 438
           ++P D S       +QPQQ   L  S I+N A    S++ L++ L  N N+ LPP+ G  
Sbjct: 447 IFPIDSSASAI-FGHQPQQNPAL-HSNISNGALTHCSVDPLDTGLSHNLNMHLPPLEGFN 504

Query: 439 EVGPRVPSLWDDDLQSLVQMGFNQ 462
              P+ P+  ++DLQS+VQMGF Q
Sbjct: 505 HTPPQFPTFCEEDLQSIVQMGFTQ 528

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069890|ref|XP_002303073.1| predicted protein [Populus trichocarpa] gi|222844799|gb|EEE82346.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 247/555 (44%), Positives = 325/555 (58%), Gaps = 103/555 (18%)

Query: 14  STPPTWSSCNFSSEKVITNC----CLNPNWDYSMDQSDPFEAALSSIVSSPAASNAPTTC 69
           S+ P W S + S  ++  NC      N NW+ S D S  FE++LSS+VSSP  SN    C
Sbjct: 25  SSMPVWQSLS-SPMEMQDNCSARRLFNSNWEKSTDHSPHFESSLSSMVSSPGVSN----C 79

Query: 70  SVIIPADGGGDNVMIRELIGRLGSICNS---GEVLPQS-------YIQAQNNNNSNTCCY 119
           +V        ++ M+RELIG LG+I NS   GE+ P S       YI A NN+ +NT CY
Sbjct: 80  NV------SSESFMVRELIGNLGNIDNSNNPGEISPHSQPMLAASYITAANNS-ANTSCY 132

Query: 120 STPLNSPPLPKLNLS-MIRGSKSSNNLPIPA-------------ADPGFAERAARLSCFA 165
           +TPLNSPP  KLN+  M + SK   N+P                ADPGFAERAA+ SCF 
Sbjct: 133 TTPLNSPP--KLNMPVMDQFSKEHLNIPSLGKPMGLNSSVAEFTADPGFAERAAKFSCFG 190

Query: 166 G-------SQMNMNSSVSA-------SDSKKLRVSRS-------------STP-ESNNNA 197
                   SQ+ +N++  A        + K  RV+ S             STP +  +  
Sbjct: 191 SRSFNGRISQLGLNNAEMANGCNPLMGNGKLARVASSPLLKAVGSQKGNKSTPLQDRSEL 250

Query: 198 DSKEGSSLSEQITS-----QTVTDSNPRKRKSIQRPKAKET---PPTSDPKVVAENPEDS 249
            + + SS+SEQI S     +   + N RKRK++ + KAK++   PP S  K  AE  ++S
Sbjct: 251 TNSQESSVSEQIPSGEAGLKASNELNSRKRKALSKGKAKQSASNPPASATKD-AETDDNS 309

Query: 250 NSMRSKQDENK----------------SDSSKTKDNSKPVEPPKDYIHVRARRGQATDSH 293
           N+ R K +E +                 D  + K NS+P EPPKDYIHVRARRGQATDSH
Sbjct: 310 NTKRIKPNEGEENENSPVKAEEEPKGSGDDIQNKANSRPPEPPKDYIHVRARRGQATDSH 369

Query: 294 SLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 353
           SLAERVRREKISERMK LQDLVPGCNKVTGKA+MLDEIINYVQSLQRQVEFLSMKLA+VN
Sbjct: 370 SLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVN 429

Query: 354 PRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQ 413
            R+D NM+ L+SKD+FQS   + H ++P D S       +Q QQ   L S+ I+N A   
Sbjct: 430 TRLDFNMDTLISKDIFQSSQPLPHPIFPLDSSAPAAIFSHQQQQNPPLHSN-ISNGAVTH 488

Query: 414 FSINALNSS-LHRNHNIQLPPINGHGEVGPRVPSLWDDDLQSLVQMGFNQNQ------PR 466
            S++ L+++ L +  N QLPP++G  +   + P+  +DDLQ++VQMG+ QN       P+
Sbjct: 489 CSVDPLDTTGLCQTLNAQLPPLDGFTQNAHQYPTFCEDDLQTIVQMGYGQNPNLETFLPQ 548

Query: 467 SLNGSMATTQMKIEM 481
           + +GS   + MKIE+
Sbjct: 549 NFHGSNQVSHMKIEL 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558973|ref|XP_003547776.1| PREDICTED: transcription factor bHLH62-like [Glycine max]

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 239/543 (44%), Positives = 316/543 (58%), Gaps = 104/543 (19%)

Query: 32  NCCLNPNWD-----YSMDQSDPFEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRE 86
           +C  NPNWD     + +   D   +ALSS+VSSPAAS+ P   S         +N +IRE
Sbjct: 17  DCFYNPNWDKSTADHGLHHFD--SSALSSMVSSPAASSNPNNKS--------NENFIIRE 66

Query: 87  LIGRLGSICNSGE---------VLPQSYIQAQNNNNSNTCCYSTPLNSPP-------LPK 130
           L+G+LG I +S E         V+  S + +  NN++ T CYSTPL+SPP       L  
Sbjct: 67  LVGKLGPIGSSDEIPQHSPHPLVVASSCMNSNGNNSTYTSCYSTPLSSPPKVNIVHSLVN 126

Query: 131 LNLSMIRGSKSS----NNLPIPAADPGFAERAARLSCFAGS-------QMNMNSS----- 174
             L+ + G KS+    +++   +ADPGFAERAA+ SCF          Q+ +N++     
Sbjct: 127 ERLANLGGGKSTMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLGVNNAELAQR 186

Query: 175 -------------VSASDSKKLRVSRSSTPESNNN-----------ADSKEGSSLSEQ-- 208
                        VS+S   K   S+    E+ N+           A+S+E S++SEQ  
Sbjct: 187 SAPAMEHGGKLPRVSSSPLLKTLGSQMGAQENKNSAIHQEQEKMEGANSQEESTISEQAP 246

Query: 209 ---ITSQTVTD-SNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDENKSDSS 264
              I  +T  D  N RKRK+  + KAKET  + +P    E  EDSNS RSK +E   + +
Sbjct: 247 NGEIGVKTSQDMMNSRKRKASSKGKAKETSNSFNPTKGVEGSEDSNSKRSKPNEGDGNEN 306

Query: 265 ---------------KTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMK 309
                          + K NSKP EPPKDYIHVRARRGQATDSHSLAERVRREKISERMK
Sbjct: 307 GQVKVEEESKAEEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMK 366

Query: 310 FLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLF 369
            LQDLVPGCNKVTGKA+MLDEIINYVQSLQRQVEFLSMKLA+VN RMDL++E L+SKD+F
Sbjct: 367 LLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIENLISKDVF 426

Query: 370 Q---SCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRN 426
           Q   S   + ++++P D S QTF   +QPQQ + +  + I N +    S++ L++SL +N
Sbjct: 427 QSNNSLATLPNAVFPLDSSAQTFYG-HQPQQNNPVAHNNIPNRSVTHCSVDPLDTSLCQN 485

Query: 427 HNIQLPPINGHGEVGPRVP-SLWDDDLQSLVQMGFNQNQPR-------SLNGSMATTQMK 478
             +QLPP+N   + G + P +  +DDL ++VQMGF Q   R       S NGS    QMK
Sbjct: 486 LAMQLPPLNVFNDGGSQFPLAFLEDDLHTIVQMGFGQAANRKTPIQSPSFNGSNNVPQMK 545

Query: 479 IEM 481
           +E+
Sbjct: 546 VEL 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503048|ref|XP_003520324.1| PREDICTED: transcription factor bHLH62-like [Glycine max]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 235/547 (42%), Positives = 312/547 (57%), Gaps = 94/547 (17%)

Query: 17  PTWSSCNFSSEKVITNCCLNPNWDYSM--DQS-DPFEAALSSIVSS-PAASNAPTTCSVI 72
           PT  +C  +SE+   +C  N NWD S   DQ    F+++  S + S PAAS+ P      
Sbjct: 48  PTVMNC--ASEQTQQDCFYNSNWDKSTTTDQGLHHFDSSALSSMVSSPAASSNPNNNMSN 105

Query: 73  IPADGGGDNVMIRELIGRLGSICNSGE---------VLPQSYIQAQNNNNSNTCCYSTPL 123
                  +N +IREL+G+LG+I NS E         V+  SY+  + NN++NT CYSTPL
Sbjct: 106 -------ENFIIRELMGKLGAIGNSDEIPQHSPHPLVVASSYMNTKGNNSTNTSCYSTPL 158

Query: 124 NSPPLPKLNLSMIRGSKSSNNLPIPAADPGFAERAARLSCFAGSQMNMNS---------- 173
           +SPP   +  S+   +  ++++   +ADPGFAERAA+ SCF     N  S          
Sbjct: 159 SSPPKVNIVNSLSTTTVLNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLRVNNAEL 218

Query: 174 ---------------SVSASDSKKLRVSRSSTPESNNN-----------ADSKEGSSLSE 207
                           VS+S   K   S+    E+ N+           A+S+E S++SE
Sbjct: 219 AQRSAPAMEHGGKLPRVSSSPLLKTLGSQMGAQENKNSAIHQEQEKMEGANSQEESTISE 278

Query: 208 QI--------TSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDEN 259
           Q         TSQ + +S  RKRK+  + KAKET  T++P    E  E SNS RSK +E 
Sbjct: 279 QTPNGEIGVKTSQDIMNS--RKRKASSKGKAKETSNTTNPTKGVEGSEYSNSKRSKPNEG 336

Query: 260 KSDS-------------SKTKDNSKPVEPPKDYIHVRARRGQATDSHSLAERVRREKISE 306
             +               ++K NSKP EPPKDYIHVRARRGQATDSHSLAERVRREKISE
Sbjct: 337 NENGQVKVEEESKAEEEKQSKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISE 396

Query: 307 RMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSK 366
           RMK LQDLVPGCNKVTGKA+MLDEIINYVQSLQRQVEFLSMKLA+VN RMDL++E+L++K
Sbjct: 397 RMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLVTK 456

Query: 367 DLFQS----CGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSS 422
           D+FQS      +    ++P   S Q F   +QPQQ + +  + I N      S++ L++S
Sbjct: 457 DVFQSNNSLATHPNAIIFPLGSSAQAFYG-HQPQQNNPVFHNNIPNRTVTHCSVDPLDTS 515

Query: 423 LHRNHNIQLPPINGHGEVGPRVP-SLWDDDLQSLVQMGFNQN-------QPRSLNGSMAT 474
           L +N  +QL P++   E G + P +  +DDL ++VQMGF Q        Q  S NGS   
Sbjct: 516 LCQNLAMQLSPLDVFNEGGSQFPLAFLEDDLHTIVQMGFGQAANRKTPIQSSSFNGSNNV 575

Query: 475 TQMKIEM 481
            QMK+E+
Sbjct: 576 PQMKVEL 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.569	0.569	0.487	1.2e-67
TAIR|locus:2152551	498	AT5G48560 "AT5G48560" [Arabido	0.879	0.849	0.379	1e-59
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.671	0.708	0.430	7.5e-57
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.519	0.673	0.475	4.6e-50
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.457	0.452	0.48	1.1e-48
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.617	0.733	0.412	2.9e-48
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.357	0.401	0.575	3.7e-46
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.586	0.723	0.421	2.7e-45
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.247	0.272	0.721	9.6e-44
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.336	0.442	0.518	3.6e-42

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 618 (222.6 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
 Identities = 142/291 (48%), Positives = 176/291 (60%)

Query:   197 ADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQ 256
             A  K     S   TS    DS+ ++ KS +   A     +   K    N E+    +  +
Sbjct:   202 ASGKGKGKDSPMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGK 261

Query:   257 DEXXXXXXXXXXXXXPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVP 316
             D              P EPPKDYIHVRARRG+ATDSHSLAERVRREKIS+RMK LQDLVP
Sbjct:   262 DSSSK----------PPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVP 311

Query:   317 GCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLN-MEALLSKDLFQSCGYV 375
             GCNKV GKAVMLDEIINYVQSLQRQVEFLSMKLATVNP++D N +  LL+KD+ QSC  +
Sbjct:   312 GCNKVVGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQSCSPL 371

Query:   376 QHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLPPIN 435
             Q S +P + S    P   QPQQG+ L   G+ N  +NQ S++ L+ +  R      P +N
Sbjct:   372 QSSHFPLETSGAPLPYINQPQQGNPL-GCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLN 430

Query:   436 GHGEVGPRVPSLWDDDLQSLVQMGFNQNQP-----RSLNGSMATTQMKIEM 481
             G  +   +V + W DDLQS+VQM   Q+Q       S NGS+ T  MK+E+
Sbjct:   431 GVSDAASQVGAFWQDDLQSVVQMDMGQSQEIATSSNSYNGSLQTVHMKMEL 481

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 178/469 (37%), Positives = 248/469 (52%)

Query:    39 WDYSMDQSDP---FEAALSSIVSSPAASNAPTTCSVIIPADGGGDNVMIRELIGRLGSIC 95
             W+ S +Q      F++ALSS+VSSP  SN+  +        GGGD  +IRELIG+LG+I 
Sbjct:    50 WEKSTEQQQQQSIFDSALSSLVSSPTPSNSNFS-------GGGGDGFLIRELIGKLGNIG 102

Query:    96 NSGEVLPQSYIQAQXXXXXXTCCYSTXXXXXXXXXXXXXMIRGSKSSNNLPIPAADPGFA 155
             N+     + Y            CY+T              +  ++++  L   +ADPGFA
Sbjct:   103 NNNNNSGEIYGTPMSRSAS---CYATPMSSPPPPTNSNSQMMMNRTTP-LTEFSADPGFA 158

Query:   156 ERAARLSCFAGSQMN--MNSSVSASDSKKL-----RVSR-SSTP--ESNNNADSKEGSSL 205
             ERAAR SCF     N   N+++  ++   +     +++R SSTP  ++  + +   G   
Sbjct:   159 ERAARFSCFGSRSFNGRTNTNLPINNGNNMVNNSGKLTRVSSTPALKALVSPEVTPGGEF 218

Query:   206 SEQITS--QTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDEXXXXX 263
             S +  S  +  +  NP    S   P   +T   +  K  +++ E+    R +++E     
Sbjct:   219 SRKRKSVPKGKSKENPISTAS-PSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDEEE 277

Query:   264 XXX-----XXXXXPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGC 318
                          P EPPKDYIHVRARRGQATDSHSLAERVRREKI ERMK LQDLVPGC
Sbjct:   278 EGEGEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGC 337

Query:   319 NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP-RMDLNMEALLSKDLFQSCGYVQH 377
             NKVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN  R+D N++AL+SKD+        +
Sbjct:   338 NKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVMIPSS--NN 395

Query:   378 SLYPGDCSVQTFPSRYQPQ-----QGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLP 432
              L+      ++    +Q Q       S L  +  +NN   Q  +N+L +S        LP
Sbjct:   396 RLHEEGLQSKSSSHHHQQQLNIYNNNSQLLPNISSNNMMLQSPMNSLETSTLARSFTHLP 455

Query:   433 PINGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLNGSMATTQMKIEM 481
              +    +   +     ++DLQS+V MG  +N P   N S     MKIE+
Sbjct:   456 TLTQFTDSISQYQMFSEEDLQSIVGMGVAEN-PN--NESQ---HMKIEL 498

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 151/351 (43%), Positives = 201/351 (57%)

Query:   139 SKSSNNLPIPAADPGFAERAARLSCFAGSQMNM--NSSVSASDSKKLRVSRSSTPESNNN 196
             +K++  +   + DPGFAERAAR SCF     N   NS    ++   +  +    P  +++
Sbjct:   126 TKTTTPMAELSGDPGFAERAARFSCFGSRSFNSRTNSPFPINNEPPI-TTNEKMPRVSSS 184

Query:   197 ADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPKAKETPPT--SDPKVVAENPEDSNSMRS 254
                K    L+  + +   +    RKRK+    K+K+  P+  S  K + E  EDS+  R 
Sbjct:   185 PVFKP---LASHVPAGESSGELSRKRKT----KSKQNSPSAVSSSKEIEEK-EDSDPKRC 236

Query:   255 KQDEXXXXXXXXXXXXXPVEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDL 314
             K+ E              ++P KDYIHVRARRGQATDSHSLAERVRREKISERMK LQDL
Sbjct:   237 KKSEENGDKTKS------IDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290

Query:   315 VPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGY 374
             VPGCNKVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN R+D NM+ALLSKD+F S   
Sbjct:   291 VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNN 350

Query:   375 VQHSLYPGDCSVQTFPSRYQPQQGSHLTSS-GINNNAENQFSINALNSSLHRNHNIQLPP 433
             + H        V    S  +   G H   +  +N +  +   IN L +S  R+    LP 
Sbjct:   351 LMHHQ-----QVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFISHLPT 405

Query:   434 INGHGEVGPRVPSLWDDDLQSLVQMGFNQNQPRSLN-GS--MATTQMKIEM 481
             +    +   +  +  +DDL S++ MGF QN+ + LN GS     + MK E+
Sbjct:   406 LAHFTDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL 456

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 128/269 (47%), Positives = 156/269 (57%)

Query:   186 SRSSTPESNNNADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPKAKETPPTS-----DPK 240
             S+ +T ESN ++   +  S+S+++ +   T SN RKRKSI     KE+P +S     + K
Sbjct:    85 SQPTTQESNKSS-LLDPDSVSDRVHT---TKSNSRKRKSIPSGNGKESPASSSLTASNSK 140

Query:   241 VVAENPEDSNSMRSKQD---------EXXXXXXXXXXXXXPVEPPKDYIHVRARRGQATD 291
             V  EN       RSKQD         E             P E PKDYIHVRARRGQATD
Sbjct:   141 VSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATD 200

Query:   292 SHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT 351
             SHSLAER RREKISERM  LQDLVPGCN++TGKAVMLDEIINYVQSLQRQVEFLSMKLAT
Sbjct:   201 SHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLAT 260

Query:   352 VNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQQGSHLTSSGINNNAE 411
             VNPRM+ N  A LS ++ Q    +  SLY   CS Q  PS Y    G ++          
Sbjct:   261 VNPRMEFNANASLSTEMIQPGESLTQSLYAMACSEQRLPSAYY-SLGKNMPRFSDTQFPS 319

Query:   412 NQFSINALNSSLHRNHNIQLPPINGHGEV 440
             N   ++        N+++Q     G G++
Sbjct:   320 NDGFVHTETPGFWENNDLQSIVQMGFGDI 348

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 108/225 (48%), Positives = 142/225 (63%)

Query:   170 NMNSSVSASDSKKLRVSRSSTPESNNNADSKEGSSLSEQITSQTVTDSNPRKRKSIQRPK 229
             +++ +V  S  +    ++ + P S N ++  + S  + Q   +T +++  RKR   +  +
Sbjct:   188 DVSVAVKESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQKNSE 247

Query:   230 AKETPPTSDPKVVAENPEDS--NSMRSKQDEXXXXXXXXXXXXXPVEPPKD-YIHVRARR 286
             A ++  +   +   +N  D   N  +S                   +PPKD YIHVRARR
Sbjct:   248 AAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARR 307

Query:   287 GQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 346
             GQAT+SHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS
Sbjct:   308 GQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 367

Query:   347 MKLATVNPRMDLNMEALLSKDLFQ-SCGYVQHSLYPGDCSVQTFP 390
             MKLATVNP+MD N+E LL+KD  Q   G    + +P + S+  +P
Sbjct:   368 MKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSM-AYP 411

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 137/332 (41%), Positives = 184/332 (55%)

Query:   164 FAGSQMNMNSSVSASDSKKLRVSRSSTPESNNNADSK---EGSSLSEQITSQTVTDS--- 217
             FAG      SSVS   S  ++ + ++  +  + A +    +G      +  +  +D    
Sbjct:    93 FAGGGSREASSVSDPASSAMKDAAANAKKRKSTAAAAAAAKGKGKEPPVGEEKESDGKRC 152

Query:   218 ---NPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDEXXXXXXXXXXXXXPVE 274
                N  K  S+ +PKA++    SD  V     ED      KQ +             PVE
Sbjct:   153 KTGNGEKESSV-KPKAEQAG--SDSSV-----EDGGGGGQKQGKGKNAK--------PVE 196

Query:   275 PPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINY 334
             PPKDY+HVRARRGQATDSHSLAERVRRE+IS+RMK LQDLVPGCNKV GKA+MLDEIINY
Sbjct:   197 PPKDYVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINY 256

Query:   335 VQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQ 394
             VQSLQRQVEFLSMKLATVNP    N+  LL KD+FQ+CG    S++  + S   F  R+ 
Sbjct:   257 VQSLQRQVEFLSMKLATVNPLDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAF--RFA 314

Query:   395 PQQGSHLTSSGINNNAENQFSINALNSSLHRNHNI-QLPPINGHGEVGPRVPSLWDDDLQ 453
              +QG  +      N+ E+Q ++N L+ +L +  N  Q    +G      +  + W+DDLQ
Sbjct:   315 -EQGD-VFQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGANLQQRNFWEDDLQ 372

Query:   454 SLVQMGFNQNQPRSLN-----GSMATTQMKIE 480
             S+  +   Q+Q   ++     G      MK+E
Sbjct:   373 SVFHIENGQSQENGVSAPNFHGQQQAGHMKME 404

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 435 (158.2 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 103/179 (57%), Positives = 117/179 (65%)

Query:   277 KDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQ 336
             ++YIHVRARRGQAT+SHSLAER+RREKISERMK LQDLVPGC+KVTGKAVMLDEIINYVQ
Sbjct:   243 EEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQ 302

Query:   337 SLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSLYPGDCSVQTFPSRYQPQ 396
             SLQRQVEFLSMKLATVNPR+DLN+E LLSKDL +  G    S+  G       P     Q
Sbjct:   303 SLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSI--GFSPEMMHPQLQLSQ 360

Query:   397 QGSHLTSSGINNNAENQFSINALNSSLHRNHNIQLP-PINGH-GEVGPRV-PSLWDDDL 452
              G  L   G    A        + + L      Q+P  +NG   +V     PSL   DL
Sbjct:   361 PG--LIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDL 417

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 127/301 (42%), Positives = 165/301 (54%)

Query:   150 ADPGFAERAARLSCFAGSQMNMN---SSVSASDSKKLRVSRSSTPESN--NNADSKEGSS 204
             AD GF ERAA+ S F   +M MN   SS+   DS  L +  +  P  +  +N    + S 
Sbjct:    79 ADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPSGSKLDNGPLTDASK 138

Query:   205 LSEQITSQTVT-DSNPRKRKSIQRPKAKETPP----TSDPKVVAENPEDSNSMRSKQDEX 259
             L ++ +   V+ DS           K  +T      +   K + ++ E+    + K ++ 
Sbjct:   139 LVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQS 198

Query:   260 -XXXXXXXXXXXXPVEPPKD-YIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPG 317
                          P +  KD YIH+RARRGQAT+SHSLAERVRREKISERMKFLQDLVPG
Sbjct:   199 PTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPG 258

Query:   318 CNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYV-Q 376
             C+KVTGKAVMLDEIINYVQSLQ Q+EFLSMKL+ VNP +D N+E+LL+KD  QS      
Sbjct:   259 CDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPTFP 318

Query:   377 HS---LYPGDCSVQTFPSRYQPQQGS-HLTSSGINNNAENQFSINALNSSLHRNHNIQLP 432
             H+   LYP   S  +     QP   S  L S G+     + +  +  N  +H NH     
Sbjct:   319 HNMSMLYP-PVSYLSQTGFMQPNISSMSLLSGGLKRQETHGYESDHHNL-VHMNHETGTA 376

Query:   433 P 433
             P
Sbjct:   377 P 377

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 433 (157.5 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 88/122 (72%), Positives = 100/122 (81%)

Query:   275 PPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINY 334
             P +DYIHVRARRGQAT+SHSLAERVRREKISERMK+LQDLVPGC+KVTGKAVMLDEIINY
Sbjct:   253 PKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 312

Query:   335 VQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHS---LYPGDCSVQTFPS 391
             VQSLQRQVEFLSMKLA+VNP +D N+E +LSKD+FQ  G    S    +P     +  P 
Sbjct:   313 VQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHPRLHPP 372

Query:   392 RY 393
             +Y
Sbjct:   373 KY 374

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 86/166 (51%), Positives = 116/166 (69%)

Query:   208 QITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSKQDEXXXXXXXXX 267
             Q++   V  ++P  ++ +  P+A+        +   E+P+  N    K+ +         
Sbjct:   132 QVSDDAVLGASPVGKRRL--PEAESQWNKKAVEEFQEDPQRGNDQSQKKHKNDQSKETVN 189

Query:   268 XXXXPVE--PPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKA 325
                   E  P ++YIH+RARRGQAT+SHSLAERVRREKISERM+ LQ+LVPGCNK+TGKA
Sbjct:   190 KESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 249

Query:   326 VMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNMEALLSKDLFQS 371
             VMLDEIINYVQSLQ+QVEFLSMKLATVNP ++++++ +L+KDL QS
Sbjct:   250 VMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQS 295

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRT2	BH062_ARATH	No assigned EC number	0.4129	0.8856	0.9342	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	481
smart00353	53	smart00353, HLH, helix loop helix domain	1e-10
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	4e-10
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	2e-07

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 294 SLAERVRREKISERMKFLQDLVPGCNKVTG--KAVMLDEIINYVQSLQRQVE 343
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 286 RGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTG--KAVMLDEIINYVQSLQRQVE 343
           R    ++H+L ER RRE+I++    L+ L+P         KA +L + ++Y++SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 292 SHSLAERVRREKISERMKFLQDLVPGCN--KVTGKAVMLDEIINYVQSLQ 339
           +H+  ER RR++I++  + L++L+P     K++ KA +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLS-KAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	481
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.35
smart00353	53	HLH helix loop helix domain.	99.28
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.25
KOG1318	411	consensus Helix loop helix transcription factor EB	99.22
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.88
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.4
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	97.95
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.9
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.81
PLN03217	93	transcription factor ATBS1; Provisional	97.42
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.38
KOG0561	373	consensus bHLH transcription factor [Transcription	97.13
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.8
KOG3910	632	consensus Helix loop helix transcription factor [T	96.24
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	87.55
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	85.07

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.35  E-value=9.1e-13  Score=100.00  Aligned_cols=53  Identities=36%  Similarity=0.631  Sum_probs=48.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      +..|+..||+||++||+.|..|+++||.+   .| .+|++||+.||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999998   45 5999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.28  E-value=6.5e-12  Score=93.97  Aligned_cols=49  Identities=39%  Similarity=0.581  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHH
Q 011621          294 SLAERVRREKISERMKFLQDLVPG---CNKVTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       294 s~aERrRReKINer~~~LrsLVP~---~~K~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      +..||+||++||+.|..|+++||.   ..|+ +|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999996   4454 999999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.25  E-value=9.2e-12  Score=94.69  Aligned_cols=49  Identities=35%  Similarity=0.691  Sum_probs=44.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC----CCCCCchhhHHHHHHHHHHHH
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ  339 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~----~K~tdKAsILdeAIdYIK~LQ  339 (481)
                      ..|+..||+||++||+.|..|+.+||.+    ....+|++||+.||+||+.||
T Consensus         3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            3699999999999999999999999987    233599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.22  E-value=5.1e-11  Score=124.07  Aligned_cols=56  Identities=36%  Similarity=0.669  Sum_probs=48.9

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHH
Q 011621          288 QATDSHSLAERVRREKISERMKFLQDLVPGCNK---VTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       288 ~at~sHs~aERrRReKINer~~~LrsLVP~~~K---~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      ++++.|+++|||||++||++|+.|..|||.|.-   .++|..||..+++||++||+..+
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999941   25799999999999999987444

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.88  E-value=9.3e-10  Score=105.23  Aligned_cols=74  Identities=31%  Similarity=0.507  Sum_probs=62.8

Q ss_pred             cccccccccCCCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011621          278 DYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNK------VTGKAVMLDEIINYVQSLQRQVEFLSMKLAT  351 (481)
Q Consensus       278 ~~i~~RaRRg~at~sHs~aERrRReKINer~~~LrsLVP~~~K------~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~  351 (481)
                      ...+.|+|+     .|.-+||+||+-|+..+..||+|||.|..      ++.||.||..+|+||.+|+.++...+.++++
T Consensus        56 ~syk~rrr~-----aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~  130 (229)
T KOG1319|consen   56 ESYKDRRRR-----AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST  130 (229)
T ss_pred             hhHHHHHHH-----HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555     79999999999999999999999998742      2479999999999999999999999999988


Q ss_pred             cCCCc
Q 011621          352 VNPRM  356 (481)
Q Consensus       352 vnp~l  356 (481)
                      ++..+
T Consensus       131 L~k~v  135 (229)
T KOG1319|consen  131 LRKDV  135 (229)
T ss_pred             HHHHH
Confidence            87653

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.40  E-value=1.1e-07  Score=93.84  Aligned_cols=52  Identities=33%  Similarity=0.501  Sum_probs=46.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC--------CCCCCchhhHHHHHHHHHHHHHHHH
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC--------NKVTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~--------~K~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      ..|-+.|||||.|||+.|..|++|||.+        .|+ +||.||+-|++|+|.||.+..
T Consensus        34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~skl-EKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKL-EKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-HHHHHHHHHHHHHHHHhcccc
Confidence            4688999999999999999999999965        343 899999999999999997543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=97.95  E-value=8e-06  Score=91.68  Aligned_cols=52  Identities=19%  Similarity=0.373  Sum_probs=47.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCCC---CCCCchhhHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGCN---KVTGKAVMLDEIINYVQSLQRQ  341 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~~---K~tdKAsILdeAIdYIK~LQ~Q  341 (481)
                      +.+|+.+|||||+|+|.-|.+|-+|||.|.   .+.||-+||.+||.+||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            358999999999999999999999999997   4459999999999999999885

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.90  E-value=3.1e-05  Score=76.30  Aligned_cols=63  Identities=24%  Similarity=0.354  Sum_probs=50.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhcCCCCC--CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011621          289 ATDSHSLAERVRREKISERMKFLQDLVPGCN--KVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT  351 (481)
Q Consensus       289 at~sHs~aERrRReKINer~~~LrsLVP~~~--K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~  351 (481)
                      ++..|+..||+||..|.++|..|+++||...  +.-..++||+.|++||+.|+.+....+..+..
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~  123 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIED  123 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            3457999999999999999999999999653  22126999999999999999866655544433

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.81  E-value=8.3e-06  Score=92.25  Aligned_cols=63  Identities=29%  Similarity=0.508  Sum_probs=54.2

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011621          287 GQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKL  349 (481)
Q Consensus       287 g~at~sHs~aERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl  349 (481)
                      +.++++|+++|||.|..|||+|..|+++||+..-+..|..+|..||+||++||..-+.|....
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~  336 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN  336 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence            366889999999999999999999999999886445899999999999999998665554333

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.42  E-value=0.00029  Score=60.72  Aligned_cols=53  Identities=32%  Similarity=0.525  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhhcCCCC------CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621          300 RREKISERMKFLQDLVPGC------NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  353 (481)
Q Consensus       300 RReKINer~~~LrsLVP~~------~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn  353 (481)
                      --+.|+|-+..||+|+|..      .|. .-+-+|+|+.+||+.|+++|..|+++|..+-
T Consensus        18 sddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL   76 (93)
T PLN03217         18 SEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELL   76 (93)
T ss_pred             CHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478999999999999964      343 5677899999999999999999999998764

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.38  E-value=0.00032  Score=70.26  Aligned_cols=59  Identities=22%  Similarity=0.272  Sum_probs=50.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhhh-cCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011621          292 SHSLAERVRREKISERMKFLQD-LVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA  350 (481)
Q Consensus       292 sHs~aERrRReKINer~~~Lrs-LVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~  350 (481)
                      .--+.||||=.|+||.|.+|+. -+++-++..-|..||..||+||..||.-++++.....
T Consensus       121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            3458899999999999999975 4577777778999999999999999998888875433

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.13  E-value=0.00067  Score=69.61  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=44.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhcCCC--CCCCCCchhhHHHHHHHHHHHHHHH
Q 011621          292 SHSLAERVRREKISERMKFLQDLVPG--CNKVTGKAVMLDEIINYVQSLQRQV  342 (481)
Q Consensus       292 sHs~aERrRReKINer~~~LrsLVP~--~~K~tdKAsILdeAIdYIK~LQ~QV  342 (481)
                      .-+..||||=.-||..|..||.|+|.  +.|+ .||.||+.+.+||.+|+.+.
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcc
Confidence            45678999999999999999999995  5676 99999999999999998643

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.80  E-value=0.0012  Score=63.84  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=49.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVEFLSMKL  349 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl  349 (481)
                      ..++..||.|=+-+|..|..||.+||..   .|+..|..+|..||.||++|+.-++.-+..+
T Consensus       111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            3567779999999999999999999942   4556999999999999999998877665443

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=96.24  E-value=0.012  Score=63.97  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=48.4

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhcCC---CCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011621          289 ATDSHSLAERVRREKISERMKFLQDLVP---GCNKVTGKAVMLDEIINYVQSLQRQVEFLS  346 (481)
Q Consensus       289 at~sHs~aERrRReKINer~~~LrsLVP---~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le  346 (481)
                      .+...++.||.|=..||+.|++|-.+.=   ...|---|.-||..||.-|-.|++||.+-.
T Consensus       526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            3467899999999999999999998864   233433589999999999999999999844

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=87.55  E-value=0.33  Score=46.27  Aligned_cols=49  Identities=22%  Similarity=0.367  Sum_probs=42.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHH
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQR  340 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~  340 (481)
                      .-|++-||+|-..+|+.|.+||.++|..  .|. .|.-.|.-|-.||-+|=+
T Consensus        80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence            4699999999999999999999999964  565 788888888888887743

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=85.07  E-value=0.69  Score=51.44  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHhhhcCCC----CCCCCCchhhHHHHHHHHHH
Q 011621          298 RVRREKISERMKFLQDLVPG----CNKVTGKAVMLDEIINYVQS  337 (481)
Q Consensus       298 RrRReKINer~~~LrsLVP~----~~K~tdKAsILdeAIdYIK~  337 (481)
                      +|-|+|+|-.|..|.+|+|-    ++|+ ||.+||.-+|-|++-
T Consensus        34 KRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   34 KRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV   76 (712)
T ss_pred             hhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence            55799999999999999994    4786 999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	481
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	5e-18
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	3e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	9e-07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	1e-06

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 77.8 bits (192), Expect = 5e-18
 Identities = 18/75 (24%), Positives = 39/75 (52%)

Query: 285 RRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF 344
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 345 LSMKLATVNPRMDLN 359
           L  +  ++   +  +
Sbjct: 62  LKQENLSLRTAVHKS 76

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 291 DSHSLAERVRREKISERMKFLQDLVPGCNKVTG-----KAVMLDEIINYVQSLQRQVE 343
             H+  ER RR+KI+  +  L  ++P  +  +      K  +L +  +Y+Q L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 36/284 (12%), Positives = 82/284 (28%), Gaps = 100/284 (35%)

Query: 267 KDNSKPVEPPKDYIHVRARRGQATDSHSLAER--VRREKISERMKFLQDLVP-------- 316
            +  +P    + YI  R R     D+   A+    R +   +  + L +L P        
Sbjct: 100 TEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 317 --GCNKVTGKAVML----------------------------DEIINYVQSLQRQVE--F 344
             G     GK  +                             + ++  +Q L  Q++  +
Sbjct: 158 VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 345 LSMKLATVNPRMDLNMEALLSKDLFQSCGYVQHSL--------------YPGDCSVQT-F 389
            S    + N ++ ++      + L +S  Y ++ L              +   C  +   
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSC--KILL 270

Query: 390 PSRYQ-------PQQGSHLTSSGINN-----NAENQFSINALNSSLHRNHNIQLPP--IN 435
            +R++           +H++    +        ++      L+          LP   + 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQ-----DLPREVLT 324

Query: 436 GH-------GEVGPRVPSLWD-------DDLQSLVQMGFNQNQP 465
            +        E      + WD       D L ++++   N  +P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 54/347 (15%), Positives = 99/347 (28%), Gaps = 107/347 (30%)

Query: 205 LSEQITSQTVTDSNPRKRKSIQRPKAKETPPTSDPKVVAENPEDSNSMRSK----QDEN- 259
           L   I ++    S   +    QR +            V    +    +R      +    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKN 152

Query: 260 ----------KS-------DSSKTKDN-------------SKP---VEPPKDYIHVRARR 286
                     K+        S K +               + P   +E  +  ++     
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 287 GQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLD-----EIINY------- 334
             +   HS   ++R   I   ++ L    P  N +    ++L      +  N        
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKI 268

Query: 335 -VQSLQRQV-EFLSMKLATVNPRMDLNMEALL---SKDLFQSCGYVQHSLYPGDCSVQTF 389
            + +  +QV +FLS    T +  +D +   L     K L          L   DC  Q  
Sbjct: 269 LLTTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKY------L---DCRPQDL 318

Query: 390 PSRYQPQQGSHLTSSGI-------NNNAEN-------------QFSINALNSSLHRNHNI 429
           P   +    +    S I           +N             + S+N L  + +R    
Sbjct: 319 PR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 430 QL---PPINGHGEVGPRVPS-----LWDDDLQSLVQMGFNQNQPRSL 468
           +L   PP          +P+     +W D ++S V +  N+    SL
Sbjct: 377 RLSVFPP-----SA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 291 DSHSLAERVRREKISERMKFLQDLVPGCNKVTG-KAVMLDEIINYVQSLQRQ 341
             H+  ER RR+ I +    L+D VP        +A +LD+   Y+Q ++R+
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 291 DSHSLAERVRREKISERMKFLQDLVPGCNKV-TGKAVMLDEIINYVQSLQRQVEFLSMKL 349
             H+  ER RR+ I +    L+D VP        +A +LD+   Y+Q ++R+       +
Sbjct: 14  AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 283 RARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTG--KAVMLDEIINYVQSLQR 340
             +R     +H++ ER RR ++      L+D +P         K V+L +   Y+ S+Q 
Sbjct: 4   NVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 341 QVE 343
           + +
Sbjct: 60  EEQ 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	481
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.63
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.61
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.51
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.51
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.5
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.45
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.44
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.44
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.39
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.33
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.24
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.9
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.87
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.85
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.76
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.37
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.36
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.76

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.63  E-value=1.3e-16  Score=131.13  Aligned_cols=67  Identities=24%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011621          289 ATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR  355 (481)
Q Consensus       289 at~sHs~aERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vnp~  355 (481)
                      .+.+|+++||+||++||++|..|++|||++...++|++||++||+||++||.+++.|+.++..+...
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~   72 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA   72 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999984445999999999999999999999999988776543

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.61  E-value=5.8e-16  Score=135.18  Aligned_cols=72  Identities=31%  Similarity=0.429  Sum_probs=51.1

Q ss_pred             ccccccccccCCCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011621          277 KDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNK---VTGKAVMLDEIINYVQSLQRQVEFLSMK  348 (481)
Q Consensus       277 ~~~i~~RaRRg~at~sHs~aERrRReKINer~~~LrsLVP~~~K---~tdKAsILdeAIdYIK~LQ~QVe~Le~k  348 (481)
                      ++..+.++++.+++.+|+++||+||++||++|..|++|||.|.+   ..+|++||+.||+||++||.+++.|+..
T Consensus        15 ~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           15 ESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777788888999999999999999999999999999853   2489999999999999999999999864

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.51  E-value=4.4e-15  Score=116.28  Aligned_cols=56  Identities=25%  Similarity=0.418  Sum_probs=49.8

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHH
Q 011621          287 GQATDSHSLAERVRREKISERMKFLQDLVPGCNK-----VTGKAVMLDEIINYVQSLQRQV  342 (481)
Q Consensus       287 g~at~sHs~aERrRReKINer~~~LrsLVP~~~K-----~tdKAsILdeAIdYIK~LQ~QV  342 (481)
                      ...+..|+++||+||++||+.|..|++|||.|..     ..+|++||+.||+||+.||+++
T Consensus         3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999862     2499999999999999999875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.51  E-value=2.4e-15  Score=118.72  Aligned_cols=54  Identities=28%  Similarity=0.452  Sum_probs=48.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGCNK------VTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~~K------~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      +++|.++||+||++||+.|..|+.|||.+.+      ..+||+||+.||+||++||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            4689999999999999999999999997632      23799999999999999998764

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.50  E-value=8.2e-15  Score=118.79  Aligned_cols=57  Identities=21%  Similarity=0.404  Sum_probs=51.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS  346 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le  346 (481)
                      +.+|+++||+||++||++|..|++|||++....||++||+.||+||+.||.++..|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            358999999999999999999999999865334999999999999999999998875

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=7e-14  Score=113.77  Aligned_cols=62  Identities=27%  Similarity=0.471  Sum_probs=57.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  352 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~v  352 (481)
                      +..|+..||+||.+||+.|..|+++||.+  .|+ +|++||..||+||+.||.+++.|+.++..+
T Consensus        13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999987  464 999999999999999999999999987665

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.44  E-value=9.2e-14  Score=113.46  Aligned_cols=62  Identities=27%  Similarity=0.477  Sum_probs=56.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  353 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn  353 (481)
                      ..|+..||+||.+||+.|..|+++||.+  .|+ +|++||..||+||+.||.+++.|+.++..+.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999985  565 9999999999999999999999988776654

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.44  E-value=1.1e-14  Score=118.17  Aligned_cols=51  Identities=31%  Similarity=0.531  Sum_probs=46.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 011621          289 ATDSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQR  340 (481)
Q Consensus       289 at~sHs~aERrRReKINer~~~LrsLVP~~----~K~tdKAsILdeAIdYIK~LQ~  340 (481)
                      ++.+|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            446899999999999999999999999987    565 999999999999999974

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.39  E-value=3.1e-13  Score=112.61  Aligned_cols=60  Identities=27%  Similarity=0.391  Sum_probs=53.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT  351 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~  351 (481)
                      ..|+..||+||++||++|..|+++||.+   .|. +|++||..||+||++|+.+.+.|...+..
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~   70 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999976   465 99999999999999999998887765544

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.33  E-value=4.8e-13  Score=109.28  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPG---CNKVTGKAVMLDEIINYVQSLQRQVEFLS  346 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~---~~K~tdKAsILdeAIdYIK~LQ~QVe~Le  346 (481)
                      +..|++.||+||.+||+.|..|+++||.   ..|...|+.||..||+||++||++|++++
T Consensus         6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3579999999999999999999999995   34544688999999999999999999876

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.24  E-value=1.3e-11  Score=101.35  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  352 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~v  352 (481)
                      ..|+..||+||..||+.|..|+++||.+   .|. .|+.||..||+||+.||.+.+.|..+...+
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999965   454 899999999999999999999888776554

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.90  E-value=1e-09  Score=107.81  Aligned_cols=53  Identities=23%  Similarity=0.439  Sum_probs=41.5

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhhcCCC-CCCCCCchhhHHHHHHHHHHHHHH
Q 011621          288 QATDSHSLAERVRREKISERMKFLQDLVPG-CNKVTGKAVMLDEIINYVQSLQRQ  341 (481)
Q Consensus       288 ~at~sHs~aERrRReKINer~~~LrsLVP~-~~K~tdKAsILdeAIdYIK~LQ~Q  341 (481)
                      .++.+|+.+||+||+|||+.|..|++|||. ..|+ ||++||..||+|||.|+..
T Consensus        11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence            344689999999999999999999999994 4565 9999999999999999864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.87  E-value=1.5e-09  Score=87.06  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=46.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC-CCCCCchhhHHHHHHHHHHHHHHHH
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC-NKVTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~-~K~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      ..|+..||+|+..||+.|..||++||.. ++..+|+.||..||+||+.||+.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4699999999999999999999999964 2334899999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.85  E-value=2.8e-09  Score=83.48  Aligned_cols=52  Identities=21%  Similarity=0.269  Sum_probs=46.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 011621          292 SHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       292 sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      .|+..||+|+..||+.|..||++||..  +++..|..+|..||+||+.||+.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999965  3345999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.76  E-value=2.6e-09  Score=106.51  Aligned_cols=52  Identities=29%  Similarity=0.432  Sum_probs=46.9

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 011621          289 ATDSHSLAERVRREKISERMKFLQDLVP----GCNKVTGKAVMLDEIINYVQSLQRQ  341 (481)
Q Consensus       289 at~sHs~aERrRReKINer~~~LrsLVP----~~~K~tdKAsILdeAIdYIK~LQ~Q  341 (481)
                      ++.+|+.+||+||+|||+.|..|+.|||    ...|+ ||++||..||+|||.|+..
T Consensus        13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            4568999999999999999999999999    45676 9999999999999999843

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.37  E-value=1.1e-07  Score=76.78  Aligned_cols=47  Identities=21%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHH
Q 011621          294 SLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQR  340 (481)
Q Consensus       294 s~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~  340 (481)
                      +-.||+|+..||+.|..||++||..  +++..|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            4568889999999999999999965  3335899999999999999984

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.36  E-value=5.6e-07  Score=75.16  Aligned_cols=47  Identities=30%  Similarity=0.457  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011621          301 REKISERMKFLQDLVPGCNK---VTGKAVMLDEIINYVQSLQRQVEFLSM  347 (481)
Q Consensus       301 ReKINer~~~LrsLVP~~~K---~tdKAsILdeAIdYIK~LQ~QVe~Le~  347 (481)
                      |..||++|++|..|||.+..   ..+|++||..+|+||+.||.+++.+.+
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e   53 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   53 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999997632   248999999999999999987665543

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.76  E-value=4e-05  Score=65.68  Aligned_cols=49  Identities=24%  Similarity=0.356  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 011621          296 AERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEF  344 (481)
Q Consensus       296 aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~  344 (481)
                      .||.|=..||+.|..||.+||..  +|+..|..+|..||+||+.||+.++.
T Consensus        32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            35778888999999999999965  44458999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	481
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-15
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-14
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	3e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	5e-12
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	7e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	4e-11
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	9e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	4e-10

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 301 REKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLN 359
           R  I++++  L+DLV G +    K+ +L + I+Y++ LQ+    L  +   +      N
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 18/75 (24%), Positives = 39/75 (52%)

Query: 285 RRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEF 344
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 345 LSMKLATVNPRMDLN 359
           L  +  ++   +  +
Sbjct: 62  LKQENLSLRTAVHKS 76

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 3e-13
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 281 HVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSL 338
           H+  +R     +H++ ER RR ++      L+D +P    N+   K V+L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 339 QRQVEFLSMKLATVNPRMD 357
           Q + + L  +   +  R +
Sbjct: 58  QAEEQKLISEEDLLRKRRE 76

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (142), Expect = 5e-12
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 291 DSHSLAERVRREKISERMKFLQDLVPGCNKVTG------KAVMLDEIINYVQSLQRQVE 343
           +SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQ+   
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 292 SHSLAERVRREKISERMKFLQDLVPGC-NKVTGKAVMLDEIINYVQSLQRQVE 343
           + ++ ER R  K++E  + L+       N+   K  +L   I Y++ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 292 SHSLAERVRREKISERMKFLQDLVPGC-NKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 349
            H+  ER RR+ I +    L+D VP    +   +A +LD+   Y+Q ++R+       +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 9e-11
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 291 DSHSLAERVRREKISERMKFLQDLVPGCNKVTG-----KAVMLDEIINYVQSLQRQVE 343
             H+  ER RR+KI+  +  L  ++P  +  +      K  +L +  +Y+Q L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 292 SHSLAERVRREKISERMKFLQDLVPGCNKV--TGKAVMLDEIINYVQSLQRQVEFLSMKL 349
           +H+  E+ RR  +   ++ L+ LVP            +L +   +++ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	481
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.45
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.41
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.39
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.35

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=122.38  Aligned_cols=65  Identities=25%  Similarity=0.375  Sum_probs=58.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621          289 ATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  353 (481)
Q Consensus       289 at~sHs~aERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn  353 (481)
                      .+..|+.+||+||++||+.|..|++|||++...++|++||+.||+||+.|+++++.|.+++..+.
T Consensus         6 kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34579999999999999999999999999875569999999999999999999999998877654

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2.2e-14  Score=110.42  Aligned_cols=52  Identities=27%  Similarity=0.453  Sum_probs=47.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCC-------CCCCCchhhHHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGC-------NKVTGKAVMLDEIINYVQSLQRQV  342 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~-------~K~tdKAsILdeAIdYIK~LQ~QV  342 (481)
                      +..|+.+||+||++||+.|..|++|||.+       .|+ +|+.||+.||+||+.||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~-sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAP-SKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCS-CTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccc-cHHHHHHHHHHHHHHHHHhh
Confidence            35799999999999999999999999953       454 99999999999999999876

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.7e-14  Score=110.30  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGCN---KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  353 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~~---K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn  353 (481)
                      ..|+.+||+||++||+.|..|++|||.+.   | .+|++||+.||+||+.|+.+++.|..++..+.
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999763   4 59999999999999999999999988776554

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.7e-14  Score=113.06  Aligned_cols=53  Identities=23%  Similarity=0.340  Sum_probs=48.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHH
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGCN-KVTGKAVMLDEIINYVQSLQRQVE  343 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~~-K~tdKAsILdeAIdYIK~LQ~QVe  343 (481)
                      ..|+..||+||++||+.|..|++|||.+. +..+|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            47999999999999999999999999874 335999999999999999998775

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.6e-14  Score=111.53  Aligned_cols=62  Identities=27%  Similarity=0.479  Sum_probs=55.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  353 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn  353 (481)
                      ..|+.+||+||++||+.|..|++|||.+  .| .+|++||..||+||+.|+.++..|..++..+.
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~   67 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999975  45 59999999999999999999999988776543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.9e-14  Score=107.68  Aligned_cols=53  Identities=26%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621          301 REKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  353 (481)
Q Consensus       301 ReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn  353 (481)
                      |++||++|..|++|||++.++++||+||.+||+||++||.+++.|++++..+.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~   53 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLK   53 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875569999999999999999999999999887664

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-13  Score=110.68  Aligned_cols=63  Identities=25%  Similarity=0.383  Sum_probs=56.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011621          291 DSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  354 (481)
Q Consensus       291 ~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vnp  354 (481)
                      ..|+.+||+||++||+.|..|+++||++   .| .+|++||..||+||+.|+.+++.|.+++..+..
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~   73 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKLISEEDLLRK   73 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999975   34 489999999999999999999999988776654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.8e-13  Score=105.79  Aligned_cols=52  Identities=27%  Similarity=0.463  Sum_probs=46.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhhcCCCCC------CCCCchhhHHHHHHHHHHHHHHH
Q 011621          290 TDSHSLAERVRREKISERMKFLQDLVPGCN------KVTGKAVMLDEIINYVQSLQRQV  342 (481)
Q Consensus       290 t~sHs~aERrRReKINer~~~LrsLVP~~~------K~tdKAsILdeAIdYIK~LQ~QV  342 (481)
                      +..|+.+||+||++||+.|..|++|||.+.      |+ +|++||..||+||+.||++.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~-sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCC-CHHHHHHHHHHHHHHHHHhh
Confidence            357999999999999999999999999763      54 89999999999999999753