Citrus Sinensis ID: 011638

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MAGVTAAKNQHQVFDVSLPESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcccccccccccEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccEEEEEEHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcEcccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
magvtaaknqhqvfdvslpesgpkcfdddgrlkrtgtlWTASAHIITAVIGSGVLSLAWATAQlgwiagpsVMFLFSFVTYYTSTLLAACyrsgdpvtgkrnyTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIErsncfhskgdknpchmnsnpymIAFGIVEIVlsqipdfdqLWWLSIVAAVMSFTYSTIGLGLGIAKVaetgkfrgsltgisigtVSETQKIWRSFQALGDIAFAYSYSIILIEIqdtvksppsesktmkkaSLISVGVTTLFYMLCGCfgyaafgdlspgnlltgfgfynpywllDIANAAIVIHLVGAYQVFCQPLFAFIEKqahqrfpdsefitkdikvpipgfkcynlnlfRLVWRTIFVILTTVISMLLPFFNDVVGLLgalgfwpltvyFPVEMYIAqkkipkwstKWLCLQILSVACLIITIAAAAGSIAGVVTDlksykpfstsy
magvtaaknqhqvfdvslpesgpkcfDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
MAGVTAAKNQHQVFDVSLPESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLiitiaaaagsiagvvtDLKSYKPFSTSY
************************CFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDT**************SLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKS********
***********************************GTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
*********QHQVFDVSLPESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTV***********KASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
**************************D*DGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPF****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
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MAGVTAAKNQHQVFDVSLPESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q39134476 Amino acid permease 3 OS= yes no 0.985 0.993 0.808 0.0
Q38967493 Amino acid permease 2 OS= no no 0.995 0.969 0.739 0.0
Q9FN04466 Amino acid permease 4 OS= no no 0.968 0.997 0.759 0.0
Q8GUM3480 Amino acid permease 5 OS= no no 0.975 0.975 0.717 0.0
Q42400485 Amino acid permease 1 OS= no no 0.952 0.942 0.606 1e-173
P92934481 Amino acid permease 6 OS= no no 0.962 0.960 0.611 1e-170
O80592475 Amino acid permease 8 OS= no no 0.952 0.962 0.597 1e-166
Q9FF99467 Probable amino acid perme no no 0.912 0.937 0.514 1e-121
Q9LRB5441 Lysine histidine transpor no no 0.843 0.918 0.287 7e-38
Q9FKS8446 Lysine histidine transpor no no 0.910 0.979 0.276 1e-37
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function desciption
 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/474 (80%), Positives = 433/474 (91%), Gaps = 1/474 (0%)

Query: 8   KNQHQVFDVSLPESG-PKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGW 66
           +N   V  V +P++G  K  DDDG+ KRTG++WTASAHIITAVIGSGVLSLAWATAQLGW
Sbjct: 3   QNHQTVLAVDMPQTGGSKYLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGW 62

Query: 67  IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQY 126
           +AGP VM LFS VTY+TS+LLAACYRSGDP++GKRNYTY+DAVRSNLGG +V +CG+VQY
Sbjct: 63  LAGPVVMLLFSAVTYFTSSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQY 122

Query: 127 LNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDF 186
           LN+FGVAIGYTIAS+ISMMAI+RSNCFH  G K+PCHMNSNPYMIAFG+V+I+ SQIPDF
Sbjct: 123 LNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDF 182

Query: 187 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQAL 246
           DQLWWLSI+AAVMSFTYS+ GL LGIA+V   GK +GSLTGISIG V+ETQKIWR+FQAL
Sbjct: 183 DQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQAL 242

Query: 247 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 306
           GDIAFAYSYSIILIEIQDTVKSPPSE KTMKKA+L+SV VTT+FYMLCGC GYAAFGDLS
Sbjct: 243 GDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLS 302

Query: 307 PGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKD 366
           PGNLLTGFGFYNPYWLLDIANAAIVIHL+GAYQV+CQPLFAFIEKQA  +FPDSEFI KD
Sbjct: 303 PGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKD 362

Query: 367 IKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVE 426
           IK+PIPGFK   LN+FRL+WRT+FVI+TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVE
Sbjct: 363 IKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVE 422

Query: 427 MYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 480
           MYIAQKKIP+WST+W+CLQ+ S+ CL+++IAAAAGSIAGV+ DLKSYKPF + Y
Sbjct: 423 MYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
224093533480 amino acid permease [Populus trichocarpa 0.989 0.989 0.839 0.0
224066805480 amino acid permease [Populus trichocarpa 0.989 0.989 0.839 0.0
359492379483 PREDICTED: amino acid permease 2 [Vitis 0.979 0.973 0.857 0.0
147811503481 hypothetical protein VITISV_005276 [Viti 0.979 0.977 0.857 0.0
224143196480 amino acid permease [Populus trichocarpa 0.989 0.989 0.835 0.0
224106788485 amino acid permease [Populus trichocarpa 1.0 0.989 0.824 0.0
225459639484 PREDICTED: amino acid permease 2 isoform 1.0 0.991 0.834 0.0
255558596486 amino acid transporter, putative [Ricinu 1.0 0.987 0.841 0.0
255558594485 amino acid transporter, putative [Ricinu 1.0 0.989 0.830 0.0
224083500463 amino acid permease [Populus trichocarpa 0.964 1.0 0.818 0.0
>gi|224093533|ref|XP_002334831.1| amino acid permease [Populus trichocarpa] gi|222875165|gb|EEF12296.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/479 (83%), Positives = 442/479 (92%), Gaps = 4/479 (0%)

Query: 5   TAAKNQHQVFDVSLP---ESGPKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWAT 61
           T+ +N HQVFD+S+    + G K FDDDGRLKRTGT+WTASAHIITAVIGSGVLSLAWA 
Sbjct: 3   TSLRN-HQVFDISIDTHQQGGSKWFDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAI 61

Query: 62  AQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKIC 121
            QLGWIAGP+VMFLFSFVT YTSTLL+ACYRSGDP+TGKRNYTY+DAVRSNLGG +VKIC
Sbjct: 62  GQLGWIAGPAVMFLFSFVTCYTSTLLSACYRSGDPITGKRNYTYMDAVRSNLGGVKVKIC 121

Query: 122 GLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLS 181
           G VQYLNLFGVAIGYTIASSISMMAI+RSNCFH  G ++PCHMN+ PYMI FGI EI+LS
Sbjct: 122 GFVQYLNLFGVAIGYTIASSISMMAIKRSNCFHKSGGQDPCHMNAYPYMIGFGIAEILLS 181

Query: 182 QIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWR 241
           QIP FDQL WLS+VAAVMSFTYS+IGLGLGI KV E GK  GSLTGISIGTV++TQKIW+
Sbjct: 182 QIPGFDQLHWLSLVAAVMSFTYSSIGLGLGIGKVIENGKISGSLTGISIGTVTQTQKIWK 241

Query: 242 SFQALGDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAA 301
           SFQALGDIAFAYS+S+IL+EIQDT+K+PPSE+KTMKKA+LISV VTT FYM CGCFGYAA
Sbjct: 242 SFQALGDIAFAYSFSMILVEIQDTIKAPPSEAKTMKKATLISVVVTTFFYMFCGCFGYAA 301

Query: 302 FGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSE 361
           FGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQV CQPL+AFIEK+A QRFPDSE
Sbjct: 302 FGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVSCQPLYAFIEKEAAQRFPDSE 361

Query: 362 FITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTV 421
           FITKDIK+PIPGF+ YNLNLFR++WRT+FV+LTTVISMLLPFFND+VGLLGALGFWPLTV
Sbjct: 362 FITKDIKIPIPGFRPYNLNLFRMIWRTLFVVLTTVISMLLPFFNDIVGLLGALGFWPLTV 421

Query: 422 YFPVEMYIAQKKIPKWSTKWLCLQILSVACLIITIAAAAGSIAGVVTDLKSYKPFSTSY 480
           YFPVEMYI QKKIPKWST+WLCLQILSVACLIITIAAAAGS+AG+V DLKS KPF TSY
Sbjct: 422 YFPVEMYIVQKKIPKWSTRWLCLQILSVACLIITIAAAAGSVAGIVGDLKSIKPFQTSY 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066805|ref|XP_002302224.1| amino acid permease [Populus trichocarpa] gi|222843950|gb|EEE81497.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492379|ref|XP_003634405.1| PREDICTED: amino acid permease 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147811503|emb|CAN61092.1| hypothetical protein VITISV_005276 [Vitis vinifera] gi|302141776|emb|CBI18979.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143196|ref|XP_002336005.1| amino acid permease [Populus trichocarpa] gi|222838437|gb|EEE76802.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106788|ref|XP_002333631.1| amino acid permease [Populus trichocarpa] gi|222837854|gb|EEE76219.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459639|ref|XP_002285879.1| PREDICTED: amino acid permease 2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558596|ref|XP_002520323.1| amino acid transporter, putative [Ricinus communis] gi|3293031|emb|CAA07563.1| amino acid carrier [Ricinus communis] gi|223540542|gb|EEF42109.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255558594|ref|XP_002520322.1| amino acid transporter, putative [Ricinus communis] gi|223540541|gb|EEF42108.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.985 0.993 0.784 1.7e-208
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.979 0.953 0.737 1.8e-197
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.968 0.997 0.740 8.1e-195
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.972 0.972 0.703 1.9e-186
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.977 0.975 0.596 2.4e-156
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.956 0.946 0.589 1.1e-153
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.952 0.962 0.588 6.9e-150
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.879 0.903 0.524 1.2e-120
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.645 0.702 0.324 1.2e-47
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.625 0.680 0.296 1.6e-43
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2016 (714.7 bits), Expect = 1.7e-208, P = 1.7e-208
 Identities = 372/474 (78%), Positives = 418/474 (88%)

Query:     8 KNQHQVFDVSLPESG-PKCFDDDGRLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGW 66
             +N   V  V +P++G  K  DDDG+ KRTG++WTASAHIITAVIGSGVLSLAWATAQLGW
Sbjct:     3 QNHQTVLAVDMPQTGGSKYLDDDGKNKRTGSVWTASAHIITAVIGSGVLSLAWATAQLGW 62

Query:    67 IAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQY 126
             +AGP VM LFS VTY+TS+LLAACYRSGDP++GKRNYTY+DAVRSNLGG +V +CG+VQY
Sbjct:    63 LAGPVVMLLFSAVTYFTSSLLAACYRSGDPISGKRNYTYMDAVRSNLGGVKVTLCGIVQY 122

Query:   127 LNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDF 186
             LN+FGVAIGYTIAS+ISMMAI+RSNCFH  G K+PCHMNSNPYMIAFG+V+I+ SQIPDF
Sbjct:   123 LNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDF 182

Query:   187 DQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQAL 246
             DQLWWLSI+AAVMSFTYS+ GL LGIA+V   GK +GSLTGISIG V+ETQKIWR+FQAL
Sbjct:   183 DQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQAL 242

Query:   247 GDIAFAYSYSIILIEIQDTVKSPPSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLS 306
             GDIAFAYSYSIILIEIQDTVKSPPSE KTMKKA+L+SV VTT+FYMLCGC GYAAFGDLS
Sbjct:   243 GDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLS 302

Query:   307 PGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKD 366
             PGNLLTGFGFYNPYWLLDIANAAIVIHL+GAYQV+CQPLFAFIEKQA  +FPDSEFI KD
Sbjct:   303 PGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKD 362

Query:   367 IKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVE 426
             IK+PIPGFK   LN+FRL+WRT+FVI+TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVE
Sbjct:   363 IKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVE 422

Query:   427 MYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 480
             MYIAQKKIP+WST+W+CLQ+ S+ CL                DLKSYKPF + Y
Sbjct:   423 MYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0015802 "basic amino acid transport" evidence=RCA;IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN04AAP4_ARATHNo assigned EC number0.75960.96870.9978nono
Q39134AAP3_ARATHNo assigned EC number0.80800.98540.9936yesno
Q8GUM3AAP5_ARATHNo assigned EC number0.71780.9750.975nono
Q38967AAP2_ARATHNo assigned EC number0.73980.99580.9695nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-120
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 4e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  356 bits (915), Expect = e-120
 Identities = 139/436 (31%), Positives = 212/436 (48%), Gaps = 31/436 (7%)

Query: 34  RTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRS 93
            T + W A  ++I A+IG+GVLSL +A  QLGWI G  ++ +   ++ YT  LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 94  GDPVTGKRNYTYVDAVRSNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCF 153
            D V GKR  +Y D      G     +      +NLFGV I Y I +  ++ AI  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 154 HSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIA 213
                   CH++   ++I FG++ I LS IP+   L  LS+VAAV S  Y  I +     
Sbjct: 121 T-------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAE 172

Query: 214 KVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSES 273
               T +      G+         K+ R F A+G I FA+    +L+ IQ+T+KSP    
Sbjct: 173 LGVLTAQ------GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKF- 225

Query: 274 KTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIH 333
           K M K  L ++ + T+ Y+L G  GY AFG+   GN+L         WL+DIAN  +V+H
Sbjct: 226 KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLP--KSDWLIDIANLLLVLH 283

Query: 334 LVGAYQVFCQPLFAFIEKQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVIL 393
           L+ +Y +   P+   +E    ++    +   K               L R+V R+  V++
Sbjct: 284 LLLSYPLQAFPIRQIVENLLFRKGASGKHNPK-------------SKLLRVVIRSGLVVI 330

Query: 394 TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQ-ILSVACL 452
           T +I++ +PF  D + L+GA    PLT   P   ++  KK  K S + L    IL V C+
Sbjct: 331 TYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICI 390

Query: 453 IITIAAAAGSIAGVVT 468
           +I +   A  +AG++ 
Sbjct: 391 VIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK10483414 tryptophan permease; Provisional 99.94
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.72
PRK10249458 phenylalanine transporter; Provisional 99.7
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.7
PRK15049499 L-asparagine permease; Provisional 99.7
PRK10644445 arginine:agmatin antiporter; Provisional 99.67
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.66
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.66
PRK11387471 S-methylmethionine transporter; Provisional 99.65
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.65
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.65
PRK10238456 aromatic amino acid transporter; Provisional 99.64
PRK10746461 putative transport protein YifK; Provisional 99.64
TIGR00911501 2A0308 L-type amino acid transporter. 99.63
TIGR00909429 2A0306 amino acid transporter. 99.62
TIGR00930 953 2a30 K-Cl cotransporter. 99.61
PRK10580457 proY putative proline-specific permease; Provision 99.61
PRK11021410 putative transporter; Provisional 99.61
TIGR00906557 2A0303 cationic amino acid transport permease. 99.6
TIGR00913478 2A0310 amino acid permease (yeast). 99.59
PRK10836489 lysine transporter; Provisional 99.59
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.57
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.55
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.54
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.53
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.5
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.47
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.45
COG0833541 LysP Amino acid transporters [Amino acid transport 99.37
COG0531466 PotE Amino acid transporters [Amino acid transport 99.37
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.32
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.31
PRK15238496 inner membrane transporter YjeM; Provisional 99.27
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.26
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.26
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.24
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.08
PF03845320 Spore_permease: Spore germination protein; InterPr 99.06
KOG3832319 consensus Predicted amino acid transporter [Genera 98.87
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.73
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.51
COG3949349 Uncharacterized membrane protein [Function unknown 98.4
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.33
PRK12488549 acetate permease; Provisional 98.28
PRK11375484 allantoin permease; Provisional 98.26
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.23
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.13
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.09
TIGR00813407 sss transporter, SSS family. have different number 97.95
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.9
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.89
PRK11017404 codB cytosine permease; Provisional 97.88
COG1457442 CodB Purine-cytosine permease and related proteins 97.86
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.71
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.6
PRK09395551 actP acetate permease; Provisional 97.58
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.55
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.41
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.4
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.19
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.95
PRK00701439 manganese transport protein MntH; Reviewed 96.92
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.9
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.86
PRK15419502 proline:sodium symporter PutP; Provisional 96.77
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.75
PRK10484523 putative transporter; Provisional 96.65
PRK15015 701 carbon starvation protein A; Provisional 96.22
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.04
COG1966575 CstA Carbon starvation protein, predicted membrane 95.76
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.7
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.42
PRK15433439 branched-chain amino acid transport system 2 carri 94.67
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.93
COG4147529 DhlC Predicted symporter [General function predict 92.9
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 92.47
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.31
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 90.58
KOG2466572 consensus Uridine permease/thiamine transporter/al 89.94
PLN00150 779 potassium ion transporter family protein; Provisio 89.81
PLN00151 852 potassium transporter; Provisional 88.88
PLN00148 785 potassium transporter; Provisional 82.33
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-57  Score=451.00  Aligned_cols=404  Identities=41%  Similarity=0.710  Sum_probs=358.1

Q ss_pred             cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638           31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR  110 (480)
Q Consensus        31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~  110 (480)
                      .++|++||+++.++.++.++|.|+|++|||++++||+.|++++++.++++.||..+|.+|.+.++++.++|.++|.|+++
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~  112 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ  112 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence            45777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhHHHHHHHHHhhCCCCcchhh
Q 011638          111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLW  190 (480)
Q Consensus       111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~  190 (480)
                      ++||+++++++...+.+.++++|+.|++..+|++..+++..+.+..      ..+.+.|+++++++.+|++++||++.++
T Consensus       113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~  186 (437)
T KOG1303|consen  113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLS  186 (437)
T ss_pred             HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhH
Confidence            9999999999999999999999999999999999999998765432      2335678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCCC
Q 011638          191 WLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPP  270 (480)
Q Consensus       191 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~  270 (480)
                      ++|..+.++.+.+.++.+.+.+.+.......+.....  .++ .+     ..+++++++.|+|.||..+|||+++||+| 
T Consensus       187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~--~~~-~~-----~~f~a~g~iaFaf~gH~v~peIq~tMk~p-  257 (437)
T KOG1303|consen  187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD--LGT-IP-----TVFTALGIIAFAYGGHAVLPEIQHTMKSP-  257 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc--CCC-Cc-----chhhhhhheeeeecCCeeeeehHhhcCCc-
Confidence            9999999999988887777766665443222111111  110 00     11899999999999999999999999999 


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCchHHHHHHHHHHHHHHHhhhhhhhchHHHHH
Q 011638          271 SESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIE  350 (480)
Q Consensus       271 ~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~  350 (480)
                         ++|+|++.+++.+++++|+.+++.||++|||+++++++.|++  .|.|+...+++++.+|++.+|+++..|+.+.+|
T Consensus       258 ---~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E  332 (437)
T KOG1303|consen  258 ---PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVE  332 (437)
T ss_pred             ---hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHH
Confidence               569999999999999999999999999999999999999975  689999999999999999999999999999999


Q ss_pred             HHhcccCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhHhhhhHHHHHH
Q 011638          351 KQAHQRFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIA  430 (480)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~v~~l~Ga~~~~~l~~ilP~~~~l~  430 (480)
                      ++..+..++  + .            ++....|.+.|..+++.+.++|..+|+|+++++++||....++++++|+++|++
T Consensus       333 ~~~~~~~~~--~-~------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~  397 (437)
T KOG1303|consen  333 KLIGVKHPD--F-K------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLL  397 (437)
T ss_pred             HHhccCCcc--c-c------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987654332  1 0            022368999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011638          431 QKKIPKWSTKWLCLQIL-SVACLIITIAAAAGSIAGVVTD  469 (480)
Q Consensus       431 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~g~~~si~~ii~~  469 (480)
                      .+|++++..+|+..+.+ .++++++++....+++++++.+
T Consensus       398 ~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  398 IKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999999988888 6899999999999999988764

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.79
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.63
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.51
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.62
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.12
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.65
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.79  E-value=6.7e-17  Score=164.88  Aligned_cols=366  Identities=12%  Similarity=-0.017  Sum_probs=214.5

Q ss_pred             cccccchHHHHHHHHHhhhhhhhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 011638           31 RLKRTGTLWTASAHIITAVIGSGVLSLAWATAQLGWIAGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVR  110 (480)
Q Consensus        31 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~  110 (480)
                      +++|+.+.++.+...+++++|+|++.+|....+.|.. +++..++.+++.......+.|..++.+. .|    +..+..+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~   78 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYAR   78 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHH
Confidence            4567889999999999999999999999998888864 7888888888888888888887766543 22    5667778


Q ss_pred             HhccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcccCCCCCCCCccCCCchhH-HHHHHHHHhhCCCCcchh
Q 011638          111 SNLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMI-AFGIVEIVLSQIPDFDQL  189 (480)
Q Consensus       111 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i-i~~~~~~pl~~~~~l~~l  189 (480)
                      +.+||+.+++..+..++........+....++.+..+++...       .  .+  ..+.+ +..+++.-+...+..|..
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~~~~~~~~~in~~g~~~~  147 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------D--PW--VLTITCVVVLWIFVLLNIVGPKMI  147 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------S--HH--HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------c--cH--HHHHHHHHHHHHHHHHHHhchHHH
Confidence            899999999999999988888888888888887765554210       0  00  11111 112222222333555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcccccccCcccchhhHHHHHHHHHHHHHHhcccchhHhhhhhcCCC
Q 011638          190 WWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSP  269 (480)
Q Consensus       190 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p  269 (480)
                      ..+..+.....+...++   ..+......++... .+.  +. .....+..++..++...+|+|.|........+|+|||
T Consensus       148 ~~~~~~~~~~~i~~~~~---~~i~~~~~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p  220 (445)
T 3l1l_A          148 TRVQAVATVLALIPIVG---IAVFGWFWFRGETY-MAA--WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHTTSTTCCCCCC-CCC--------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHhChhhc-ccc--cC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence            55554444333322111   11111111111100 011  10 0111124477788999999999999999999999999


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc----cccccccCCCchHHHHHHHHHHHHHHHhhhhhhhch
Q 011638          270 PSESKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGN----LLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPL  345 (480)
Q Consensus       270 ~~~~~~~~~~~~~s~~i~~~~Y~~~g~~gy~~fG~~~~~~----il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~  345 (480)
                      +   |+.+|++..+..++.++|++.........+.+...+    ...-......++...+..+...+....+..-.+...
T Consensus       221 ~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (445)
T 3l1l_A          221 K---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLA  297 (445)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             c---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6   899999999999999999999888777776543211    111000011234444555556666555554444444


Q ss_pred             HHHHHHHhcc-cCCCCcccccCCccCCCCccccccchhHHHHHHHHHHHHHHHHHhc----cchHHHHHHhhhhhhhhhH
Q 011638          346 FAFIEKQAHQ-RFPDSEFITKDIKVPIPGFKCYNLNLFRLVWRTIFVILTTVISMLL----PFFNDVVGLLGALGFWPLT  420 (480)
Q Consensus       346 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~~----p~~~~v~~l~Ga~~~~~l~  420 (480)
                      .+.+...-.+ ..| +. ..+.++.+.|         .+-++....+.....+....    ..++.+.++.+  ....+.
T Consensus       298 sR~~~~~a~dg~lP-~~-~~~~~~~~~P---------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~  364 (445)
T 3l1l_A          298 GQTAKAAADDGLFP-PI-FARVNKAGTP---------VAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVP  364 (445)
T ss_dssp             HHHHHHHHHTTSSC-GG-GGCCCTTCCC---------HHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHHhCCCCc-HH-HHhcCCCCCC---------HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHH
Confidence            4444443322 222 11 1211111122         22222222211111111112    23566666654  345788


Q ss_pred             hhhhHHHHHHHhCCCC
Q 011638          421 VYFPVEMYIAQKKIPK  436 (480)
Q Consensus       421 ~ilP~~~~l~~~~~~~  436 (480)
                      |.++.+.+++.+++++
T Consensus       365 y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          365 YLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHhhcCc
Confidence            9999999888776544
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 85.32
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.32  E-value=15  Score=34.48  Aligned_cols=108  Identities=15%  Similarity=0.003  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHhhhhhhh-hhHHHHHHHhhChh----HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 011638           37 TLWTASAHIITAVIGSG-VLSLAWATAQLGWI----AGPSVMFLFSFVTYYTSTLLAACYRSGDPVTGKRNYTYVDAVRS  111 (480)
Q Consensus        37 s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~----~gii~l~~~~~~s~~s~~~l~~~~~~~~~~~~~~~~~y~~~~~~  111 (480)
                      +..+-++..++..+|-| +.-.||-..+-|-.    +=.++++++++=-.+-=..+.+..++..      ...+..+...
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~------i~~~~~i~~~   79 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG------HGTTPAIFYL   79 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT------CCSHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc------ccHHHHHHHH
Confidence            45677888899999975 56689998655432    2223333333333333334444434221      2377777777


Q ss_pred             hccCcceeehhHHHHHHHHHHHHHHHHHhhhhhhHhhhh
Q 011638          112 NLGGFQVKICGLVQYLNLFGVAIGYTIASSISMMAIERS  150 (480)
Q Consensus       112 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~l~~~  150 (480)
                      ..+.+....+++...+..+..++-|.+..+-.+..+...
T Consensus        80 ~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          80 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665544455666777777777788888877766655543