Citrus Sinensis ID: 011641
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 480 | 2.2.26 [Sep-21-2011] | |||||||
| Q96558 | 480 | UDP-glucose 6-dehydrogena | yes | no | 1.0 | 1.0 | 0.943 | 0.0 | |
| Q9LIA8 | 480 | Probable UDP-glucose 6-de | no | no | 1.0 | 1.0 | 0.914 | 0.0 | |
| Q9FM01 | 480 | Probable UDP-glucose 6-de | no | no | 0.995 | 0.995 | 0.901 | 0.0 | |
| O02373 | 476 | UDP-glucose 6-dehydrogena | yes | no | 0.952 | 0.960 | 0.645 | 1e-175 | |
| Q5F3T9 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.626 | 1e-171 | |
| O60701 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.630 | 1e-170 | |
| P12378 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.630 | 1e-170 | |
| O70475 | 493 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.924 | 0.626 | 1e-169 | |
| O70199 | 493 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.924 | 0.621 | 1e-169 | |
| Q5R7B3 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.628 | 1e-169 |
| >sp|Q96558|UGDH_SOYBN UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/480 (94%), Positives = 471/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPT VK+VSVVWDAYEATKDAHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQ+I+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct: 421 EWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480
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Provides UDP-glucuronic acid for hemicellulose precursors. Glycine max (taxid: 3847) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q9LIA8|UGDH1_ARATH Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/480 (91%), Positives = 464/480 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RINAWNSD LPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYAHWVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARL
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPT VKQV+V WDAYEATKDAHG+CI+T
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFK LD+Q+I+DNMQKPAFVFDGRN+++ KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480
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Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q9FM01|UGDH2_ARATH Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/478 (90%), Positives = 461/478 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGLD +VKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYA+WVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPT VKQVSV WDAYEATKDAH VC+LT
Sbjct: 361 SIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 478
EWDEFK+LDYQ+I+DNMQKPAF+FDGRN+++ NKLREIGFIVYSIGKPLDPWLKDMPA
Sbjct: 421 EWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478
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Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O02373|UGDH_DROME UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 615 bits (1585), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/468 (64%), Positives = 368/468 (78%), Gaps = 11/468 (2%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+K+CCIGAGYVGGPT AV+ALKCP I + +VD S RI WNSD+LPIYEPGLD VVK+C
Sbjct: 1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
R NLFFSTD+E + EAD++F+SVNTPTKT G G G+AADL Y ESAAR+IA++++S+K
Sbjct: 61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
IVVEKSTVPV+ AE+I IL N K GI + ILSNPEFLAEGTAI DL N DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG +AV+ L +Y HW+P+ ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE LPEVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
+N+YQK RF +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAAL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ-VSVVWDAYEATKDAHGVCIL 419
IYDP+V +QI DLT HP + SP VK+ V + D Y A + H + I
Sbjct: 361 DIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVIC 411
Query: 420 TEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 467
TEWDEF LD++RIY +M KPA++FDGR ++D +L++IGF V +IGK
Sbjct: 412 TEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459
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Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate and heparan sulfate. Required for wingless signaling in different tissues. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5F3T9|UGDH_CHICK UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 600 bits (1548), Expect = e-171, Method: Compositional matrix adjust.
Identities = 293/468 (62%), Positives = 364/468 (77%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ +RINAWNSD LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFST ++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V ++QI DL+ D+ + + V++ D YEA AH + I TE
Sbjct: 366 IYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVD--ANKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464
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Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O60701|UGDH_HUMAN UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/468 (63%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
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Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P12378|UGDH_BOVIN UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/468 (63%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVDI+ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKL ANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSKDD---------QVARLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70475|UGDH_MOUSE UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/468 (62%), Positives = 359/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ +RINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH + I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D ++L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70199|UGDH_RAT UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 594 bits (1532), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 358/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ +RINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCE+TG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGG CFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH + I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5R7B3|UGDH_PONAB UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 594 bits (1531), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA P I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ D + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 480 | ||||||
| 225452968 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase [ | 1.0 | 1.0 | 0.945 | 0.0 | |
| 449438843 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 1.0 | 1.0 | 0.943 | 0.0 | |
| 356568722 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 1.0 | 1.0 | 0.943 | 0.0 | |
| 351726550 | 480 | UDP-glucose 6-dehydrogenase [Glycine max | 1.0 | 1.0 | 0.943 | 0.0 | |
| 144926039 | 480 | UDP-glucose dehydrogenase [Eucalyptus gr | 1.0 | 1.0 | 0.937 | 0.0 | |
| 255638733 | 480 | unknown [Glycine max] | 1.0 | 1.0 | 0.941 | 0.0 | |
| 315258127 | 480 | putative uridine diphosphate glucose deh | 1.0 | 1.0 | 0.941 | 0.0 | |
| 357502229 | 480 | UDP-glucose dehydrogenase [Medicago trun | 1.0 | 1.0 | 0.937 | 0.0 | |
| 211906438 | 479 | UDP-D-glucose dehydrogenase [Gossypium h | 0.997 | 1.0 | 0.929 | 0.0 | |
| 283488489 | 480 | UDP-D-glucose dehydrogenase [Gossypium h | 1.0 | 1.0 | 0.929 | 0.0 |
| >gi|225452968|ref|XP_002284346.1| PREDICTED: UDP-glucose 6-dehydrogenase [Vitis vinifera] gi|147778657|emb|CAN62897.1| hypothetical protein VITISV_020300 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/480 (94%), Positives = 474/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRITAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDL PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLLKPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTD+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
K+NDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKARL
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTEDQIQRDLTMNKFDWDHP+HLQPMSPT VKQVS+VWDAY ATKDAHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPIHLQPMSPTTVKQVSMVWDAYSATKDAHGICILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDY++IYDNMQKPAFVFDGRN+V+A KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct: 421 EWDEFKTLDYKKIYDNMQKPAFVFDGRNIVNAEKLREIGFIVYSIGKPLDPWLKDMPAVA 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438843|ref|XP_004137197.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Cucumis sativus] gi|449483250|ref|XP_004156534.1| PREDICTED: UDP-glucose 6-dehydrogenase-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/480 (94%), Positives = 472/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS+QLPIYEPGLDGVVK+
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSEQLPIYEPGLDGVVKE 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRG+NLFFSTDVEKHVSEADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGRNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA+ LK VYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA+SALCEAT
Sbjct: 181 TPEGQKAISTLKAVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAISALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANVSQVA++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVSQVAYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQK+RFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL
Sbjct: 301 KINDYQKNRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQV+EDQIQRDLT++KF+WDHP HLQPMSPT VKQVSVVWDAYEATK+AH VCILT
Sbjct: 361 SIYDPQVSEDQIQRDLTLSKFEWDHPTHLQPMSPTTVKQVSVVWDAYEATKEAHAVCILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQRIYDNMQKPAF+FDGRNVVD KLR+IGFIV+SIGKPLDPWLKDMPAVA
Sbjct: 421 EWDEFKTLDYQRIYDNMQKPAFIFDGRNVVDVGKLRDIGFIVFSIGKPLDPWLKDMPAVA 480
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568722|ref|XP_003552559.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/480 (94%), Positives = 472/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI+FQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIRFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ALKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPT VK+VSVVWDAYEATKDAHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQRI+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPA+A
Sbjct: 421 EWDEFKTLDYQRIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPALA 480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726550|ref|NP_001238410.1| UDP-glucose 6-dehydrogenase [Glycine max] gi|6136119|sp|Q96558.1|UGDH_SOYBN RecName: Full=UDP-glucose 6-dehydrogenase; Short=UDP-Glc dehydrogenase; Short=UDP-GlcDH; Short=UDPGDH gi|1518540|gb|AAB58398.1| UDP-glucose dehydrogenase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/480 (94%), Positives = 471/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPT VK+VSVVWDAYEATKDAHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQ+I+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct: 421 EWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|144926039|gb|ABP04019.1| UDP-glucose dehydrogenase [Eucalyptus grandis] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/480 (93%), Positives = 471/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPS+EVAVVDISVSRI AWNS+QLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVSRIQAWNSEQLPIYEPGLDAVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFAPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ LKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS+LCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSSLCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVG DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVAQVSYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKARL
Sbjct: 301 KINDYQKARFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTE+QIQRDLTMNKFDWDHP+HLQPMSPT VKQVSVVWDAY+A KDAHG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLTMNKFDWDHPVHLQPMSPTTVKQVSVVWDAYDAVKDAHGLCILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQRIYDNMQKPA++FDGRNVV+ NKLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct: 421 EWDEFKTLDYQRIYDNMQKPAYIFDGRNVVNVNKLREIGFIVYSIGKPLDPWLKDMPAVA 480
|
Source: Eucalyptus grandis Species: Eucalyptus grandis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255638733|gb|ACU19671.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/480 (94%), Positives = 471/480 (98%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS SRI AWNSDQLPIYEPGLDGVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI+FQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIRFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKA++ALKDVYA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTE QIQRDL+MNKFDWDHP+HLQP SPT VK+VSVVWDAYEATKDAHG+CILT
Sbjct: 361 SIYDPQVTEGQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQRI+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPA+A
Sbjct: 421 EWDEFKTLDYQRIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPALA 480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|315258127|gb|ADT91651.1| putative uridine diphosphate glucose dehydrogenase [Galega orientalis] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/480 (94%), Positives = 469/480 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI AWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRITAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ALK +YAHWVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQALKSIYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANV QVA++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVQQVAYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SI+DPQVTEDQIQRDL+MNKFDWDHP+HLQP SPT VK+VSVVWDAYEATKDAHG+CILT
Sbjct: 361 SIFDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGICILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFK LDYQRIY+NMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDYQRIYENMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDAWLKDMPAVA 480
|
Source: Galega orientalis Species: Galega orientalis Genus: Galega Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502229|ref|XP_003621403.1| UDP-glucose dehydrogenase [Medicago truncatula] gi|355496418|gb|AES77621.1| UDP-glucose dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/480 (93%), Positives = 466/480 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS RI AWNSD LPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKPRIAAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIRDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK VYAHWVPE++ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGLKAVQTLKSVYAHWVPEEQILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GAN+ QVA+AVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANIQQVAYAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA +
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANI 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SI+DPQVTEDQIQRDL+MNKFDWDHP+HLQPMSPT VK+VSVVWDAYEATKDAHG+CILT
Sbjct: 361 SIFDPQVTEDQIQRDLSMNKFDWDHPIHLQPMSPTTVKKVSVVWDAYEATKDAHGICILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFKTLDYQRIY+NMQKPAFVFDGRNVVDA KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKTLDYQRIYENMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 480
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906438|gb|ACJ11712.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/479 (92%), Positives = 470/479 (98%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+KICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RI AWNSDQLPIYEPGLDGVVK+C
Sbjct: 1 MKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRIAAWNSDQLPIYEPGLDGVVKEC 60
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
RG+NLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSDK
Sbjct: 61 RGRNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDK 120
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET
Sbjct: 121 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 180
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEG KAV+ALK+VYAHWVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG
Sbjct: 181 PEGNKAVQALKEVYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 240
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V+QV++AVG D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK
Sbjct: 241 ADVTQVSYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 300
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
INDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKARLS
Sbjct: 301 INDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 360
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDPQVTEDQ+QRDL+MNKFDWDHPLHLQPMSPT VKQVS VWDAYEATKDAHG+CILTE
Sbjct: 361 IYDPQVTEDQVQRDLSMNKFDWDHPLHLQPMSPTTVKQVSWVWDAYEATKDAHGICILTE 420
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
WDEFK LD++RIYDNMQKPAFVFDGRN+V+A++LREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct: 421 WDEFKKLDFKRIYDNMQKPAFVFDGRNIVNADELREIGFIVYSIGKPLDPWLKDMPAVA 479
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488489|gb|ADB24766.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/480 (92%), Positives = 466/480 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV RINAWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLDAVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI FQILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGNKAVQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVG D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQK+RFVNRVV+SMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKARL
Sbjct: 301 KINDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SI+DPQVT DQIQRDLTM KFDWDHPLHLQPMSPT VKQV+ VWDAYEAT DAHG+CILT
Sbjct: 361 SIFDPQVTVDQIQRDLTMKKFDWDHPLHLQPMSPTTVKQVTSVWDAYEATNDAHGICILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFK LD++RIYDNMQKPAFVFDGRN+V+ ++LREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDFKRIYDNMQKPAFVFDGRNIVNVDQLREIGFIVYSIGKPLDAWLKDMPAVA 480
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 480 | ||||||
| TAIR|locus:2180872 | 480 | UGD3 "UDP-glucose dehydrogenas | 1.0 | 1.0 | 0.927 | 1.7e-242 | |
| TAIR|locus:2093827 | 480 | UGD2 "UDP-glucose dehydrogenas | 1.0 | 1.0 | 0.914 | 1.3e-240 | |
| TAIR|locus:2157275 | 480 | UDG4 "UDP-glucose dehydrogenas | 0.995 | 0.995 | 0.901 | 2.3e-238 | |
| TAIR|locus:2197945 | 481 | UGD1 "UDP-glucose dehydrogenas | 1.0 | 0.997 | 0.848 | 2.5e-223 | |
| FB|FBgn0261445 | 476 | sgl "sugarless" [Drosophila me | 0.952 | 0.960 | 0.645 | 6.1e-158 | |
| UNIPROTKB|I3LIM2 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.636 | 1.2e-154 | |
| UNIPROTKB|E2R311 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.634 | 1.1e-153 | |
| UNIPROTKB|Q5F3T9 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.628 | 1.3e-153 | |
| UNIPROTKB|O60701 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.632 | 1.7e-153 | |
| UNIPROTKB|P12378 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.632 | 3.6e-153 |
| TAIR|locus:2180872 UGD3 "UDP-glucose dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2337 (827.7 bits), Expect = 1.7e-242, P = 1.7e-242
Identities = 445/480 (92%), Positives = 465/480 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPS+EVAVVDISV RINAWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRINAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIEDLFMPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
T EG AVKALKD+YA WVPE+RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TTEGFAAVKALKDIYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GANVS+V++AVG DSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GANVSEVSYAVGKDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQK+RFVNR+V+SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTE+QIQRDLTMNKFDWDHPLHLQPMSPT VKQVSV WDAY ATKDAHG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVAWDAYTATKDAHGICILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFK LD+QRI++NMQKPAFVFDGRNVVDA+KLREIGFIVYSIGKPLD WLKDMPA+A
Sbjct: 421 EWDEFKKLDFQRIFENMQKPAFVFDGRNVVDADKLREIGFIVYSIGKPLDQWLKDMPALA 480
|
|
| TAIR|locus:2093827 UGD2 "UDP-glucose dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2319 (821.4 bits), Expect = 1.3e-240, P = 1.3e-240
Identities = 439/480 (91%), Positives = 464/480 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RINAWNSD LPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYAHWVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARL
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPT VKQV+V WDAYEATKDAHG+CI+T
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 480
EWDEFK LD+Q+I+DNMQKPAFVFDGRN+++ KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480
|
|
| TAIR|locus:2157275 UDG4 "UDP-glucose dehydrogenase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2298 (814.0 bits), Expect = 2.3e-238, P = 2.3e-238
Identities = 431/478 (90%), Positives = 461/478 (96%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGLD +VKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAAR+IADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNSKGIKFQILSNPEFLAEGTAI DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAV+ LK+VYA+WVPE +I+TTNLWSAELSKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
KINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPT VKQVSV WDAYEATKDAH VC+LT
Sbjct: 361 SIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 478
EWDEFK+LDYQ+I+DNMQKPAF+FDGRN+++ NKLREIGFIVYSIGKPLDPWLKDMPA
Sbjct: 421 EWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478
|
|
| TAIR|locus:2197945 UGD1 "UDP-glucose dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
Identities = 408/481 (84%), Positives = 449/481 (93%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAV+ALKCP IEV VVDIS RINAWNSD+LPIYEPGL+ VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV E+DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR+IADVSKS
Sbjct: 61 CRGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSS 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPV+TAEAIEKILTHNSKGI+FQILSNPEFLAEGTAI+DL+NPDRVLIGGR+
Sbjct: 121 KIVVEKSTVPVRTAEAIEKILTHNSKGIEFQILSNPEFLAEGTAIKDLYNPDRVLIGGRD 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
T GQKA+KAL+DVYAHWVP ++I+ TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TAAGQKAIKALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V+QVA AVGTD+RIGPKFLNASVGFGGSCFQKDILNL+YICECNGLPE A YWKQV+
Sbjct: 241 GADVTQVAHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEAANYWKQVV 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
K+NDYQK RF NRVV+SMFNTVS KKIA+LGFAFKKDTGDTRETPAIDVC L+ DKA+L
Sbjct: 301 KVNDYQKIRFANRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCNRLVADKAKL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV-KQVSVVWDAYEATKDAHGVCIL 419
SIYDPQV E+QI+RDL+M +FDWDHP+ LQ + + +QV+VV DAYEATKDAHG+C+L
Sbjct: 361 SIYDPQVLEEQIRRDLSMARFDWDHPVPLQQIKAEGISEQVNVVSDAYEATKDAHGLCVL 420
Query: 420 TEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAV 479
TEWDEFK+LD+++I+DNMQKPAFVFDGRNVVDA KLREIGFIVYSIGKPLD WLKDMPAV
Sbjct: 421 TEWDEFKSLDFKKIFDNMQKPAFVFDGRNVVDAVKLREIGFIVYSIGKPLDSWLKDMPAV 480
Query: 480 A 480
A
Sbjct: 481 A 481
|
|
| FB|FBgn0261445 sgl "sugarless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1539 (546.8 bits), Expect = 6.1e-158, P = 6.1e-158
Identities = 302/468 (64%), Positives = 368/468 (78%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+K+CCIGAGYVGGPT AV+ALKCP I + +VD S RI WNSD+LPIYEPGLD VVK+C
Sbjct: 1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
R NLFFSTD+E + EAD++F+SVNTPTKT G G G+AADL Y ESAAR+IA++++S+K
Sbjct: 61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
IVVEKSTVPV+ AE+I IL N K GI + ILSNPEFLAEGTAI DL N DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG +AV+ L +Y HW+P+ ILTTN WS+ELSKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE LPEVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
+N+YQK RF +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAAL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ-VSVVWDAYEATKDAHGVCIL 419
IYDP+V +QI DLT HP + SP VK+ V + D Y A + H + I
Sbjct: 361 DIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVIC 411
Query: 420 TEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 467
TEWDEF LD++RIY +M KPA++FDGR ++D +L++IGF V +IGK
Sbjct: 412 TEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459
|
|
| UNIPROTKB|I3LIM2 UGDH "UDP-glucose 6-dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
Identities = 298/468 (63%), Positives = 362/468 (77%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIALKCP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIALKCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAIQDL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIQDLKYPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ HP + + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSE--DDQVARLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
| UNIPROTKB|E2R311 UGDH "UDP-glucose 6-dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
Identities = 297/468 (63%), Positives = 360/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ HP Q + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSQ--DDQVSRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
| UNIPROTKB|Q5F3T9 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 294/468 (62%), Positives = 365/468 (77%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ +RINAWNSD LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFST ++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQKAV+AL VY HWVP+++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V ++QI DL+ HP + + + V++ D YEA AH + I TE
Sbjct: 366 IYDPKVPKEQIILDLS-------HPGVSEDNQVSRL--VTISQDPYEACDGAHALVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464
|
|
| UNIPROTKB|O60701 UGDH "UDP-glucose 6-dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
Identities = 296/468 (63%), Positives = 360/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ HP + + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSE--DDQVSRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
| UNIPROTKB|P12378 UGDH "UDP-glucose 6-dehydrogenase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
Identities = 296/468 (63%), Positives = 359/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVDI+ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKL ANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLS 361
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTE 421
IYDP+V +QI DL+ HP + + + V++ D YEA AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSK--DDQVARLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 467
WD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q96558 | UGDH_SOYBN | 1, ., 1, ., 1, ., 2, 2 | 0.9437 | 1.0 | 1.0 | yes | no |
| O86422 | UDG_PSEAE | 1, ., 1, ., 1, ., 2, 2 | 0.3312 | 0.9020 | 0.9558 | yes | no |
| Q9LIA8 | UGDH1_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.9145 | 1.0 | 1.0 | no | no |
| O05973 | UDG_RICPR | 1, ., 1, ., 1, ., 2, 2 | 0.3383 | 0.8937 | 0.9884 | yes | no |
| O32271 | TUAD_BACSU | 1, ., 1, ., 1, ., 2, 2 | 0.3678 | 0.8895 | 0.9262 | yes | no |
| O60701 | UGDH_HUMAN | 1, ., 1, ., 1, ., 2, 2 | 0.6303 | 0.95 | 0.9230 | yes | no |
| Q5F3T9 | UGDH_CHICK | 1, ., 1, ., 1, ., 2, 2 | 0.6260 | 0.95 | 0.9230 | yes | no |
| Q92GB1 | UDG_RICCN | 1, ., 1, ., 1, ., 2, 2 | 0.3468 | 0.8958 | 0.9953 | yes | no |
| Q1RKF8 | UDG_RICBR | 1, ., 1, ., 1, ., 2, 2 | 0.3248 | 0.8979 | 0.9930 | yes | no |
| Q68VX0 | UDG_RICTY | 1, ., 1, ., 1, ., 2, 2 | 0.3452 | 0.8895 | 0.9838 | yes | no |
| Q4UK39 | UDG_RICFE | 1, ., 1, ., 1, ., 2, 2 | 0.3509 | 0.8979 | 0.9620 | yes | no |
| P12378 | UGDH_BOVIN | 1, ., 1, ., 1, ., 2, 2 | 0.6303 | 0.95 | 0.9230 | yes | no |
| Q5R7B3 | UGDH_PONAB | 1, ., 1, ., 1, ., 2, 2 | 0.6282 | 0.95 | 0.9230 | yes | no |
| Q19905 | UGDH_CAEEL | 1, ., 1, ., 1, ., 2, 2 | 0.5753 | 0.9520 | 0.9501 | yes | no |
| Q9FM01 | UGDH2_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.9016 | 0.9958 | 0.9958 | no | no |
| O54068 | UDG_RHIME | 1, ., 1, ., 1, ., 2, 2 | 0.3624 | 0.9041 | 0.9931 | yes | no |
| O02373 | UGDH_DROME | 1, ., 1, ., 1, ., 2, 2 | 0.6452 | 0.9520 | 0.9600 | yes | no |
| O70475 | UGDH_MOUSE | 1, ., 1, ., 1, ., 2, 2 | 0.6260 | 0.95 | 0.9249 | yes | no |
| D4GYH5 | AGLM_HALVD | 1, ., 1, ., 1, ., 2, 2 | 0.3159 | 0.85 | 0.9488 | yes | no |
| O70199 | UGDH_RAT | 1, ., 1, ., 1, ., 2, 2 | 0.6217 | 0.95 | 0.9249 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 480 | |||
| PLN02353 | 473 | PLN02353, PLN02353, probable UDP-glucose 6-dehydro | 0.0 | |
| COG1004 | 414 | COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas | 1e-127 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 1e-111 | |
| pfam03721 | 188 | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose | 8e-73 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 1e-55 | |
| pfam00984 | 96 | pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose d | 8e-42 | |
| pfam03720 | 103 | pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose | 2e-35 | |
| smart00984 | 99 | smart00984, UDPG_MGDP_dh_C, UDP binding domain | 1e-29 | |
| PRK11064 | 415 | PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydro | 4e-28 | |
| PRK15057 | 388 | PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; P | 3e-24 | |
| PRK15182 | 425 | PRK15182, PRK15182, Vi polysaccharide biosynthesis | 1e-14 |
| >gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Score = 1089 bits (2818), Expect = 0.0
Identities = 441/473 (93%), Positives = 459/473 (97%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEV VVDISV RI+AWNSDQLPIYEPGLD VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFSTDVEKHV+EADIVFVSVNTPTKT+GLGAGKAADLTYWESAAR+IADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI FQILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180
Query: 181 TPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKAV+ALKDVYAHWVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+VSQV+ AVG DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI
Sbjct: 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
K+NDYQKSRFVNRVV+SMFNTVS KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA+L
Sbjct: 301 KMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
SIYDPQVTE+QIQRDL+MNKFDWDHP HLQPMSPT VKQVSVVWDAYEATK AHG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILT 420
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWL 473
EWDEFKTLDYQ+IYDNMQKPAFVFDGRNV+D KLREIGFIVYSIGKPLDPWL
Sbjct: 421 EWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473
|
Length = 473 |
| >gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-127
Identities = 179/453 (39%), Positives = 253/453 (55%), Gaps = 42/453 (9%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI IG GYVG T A +A EV VDI S++ N PIYEPGL+ ++K+
Sbjct: 2 KITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL 59
Query: 63 GKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
L F+TD E+ V +AD+VF++V TP G +ADL+Y E+ A+ I ++
Sbjct: 60 ASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKA 114
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
+VV KSTVPV T E + + + G F++ SNPEFL EG+A+ D PDR++IG R
Sbjct: 115 VVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRS- 173
Query: 182 PEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
++A L+++YA ++ +D IL T+L AEL K AANAFLA +IS +N ++ +CE
Sbjct: 174 ---ERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230
Query: 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
GA+V QVA +G D RIG FLNA G+GGSCF KD L+ E L + V+
Sbjct: 231 GADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAE--ELGYDPNLLEAVV 288
Query: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
++N+ +K + +++ + + K IAVLG AFK +T D RE+PA+D+ K L A +
Sbjct: 289 EVNERRKDKLAEKILNHL--GLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEV 346
Query: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILT 420
YDP E N F P V + DA EA K A + I T
Sbjct: 347 IAYDPVAME---------NAF------RNFP-------DVELESDAEEALKGADAIVINT 384
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453
EWDEF+ LD++++ M+ P V DGRN+ D +
Sbjct: 385 EWDEFRDLDFEKLL--MKTPV-VIDGRNIFDPD 414
|
Length = 414 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-111
Identities = 160/450 (35%), Positives = 233/450 (51%), Gaps = 46/450 (10%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI IG GYVG P A++A +V VDI +++ N + PIYEPGLD ++ +
Sbjct: 2 KIAVIGLGYVGLPLAALLADL--GHDVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKAL 59
Query: 63 GKNLF-FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+TD E+ + +AD++ + V TP K G + DL+Y ESAA IA +
Sbjct: 60 KAGRLRATTDYEEAIRDADVIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGA 114
Query: 122 IVVEKSTVPVKTAEAIEK-ILTHNSK--GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
VV +STVP T E + K IL + G F + NPEFL EG A+ DL +PDR++ G
Sbjct: 115 TVVLESTVPPGTTEEVVKPILERSGLKLGEDFYLAYNPEFLREGNAVHDLLHPDRIVGG- 173
Query: 179 RETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
ET E A +A+ ++Y+ + + +L T++ +AE+ KLA N F A +I+ N ++ +CE
Sbjct: 174 -ETEE---AGEAVAELYSPII-DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 228
Query: 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298
A G +V +V A GTD RIG FLN G GG C KD L L+ + G E +
Sbjct: 229 ALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIAKAKELGYN--PELIEA 286
Query: 299 VIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA 358
+IND Q V ++ + + K + +LG AFK +T D RE+PA+D+ + L A
Sbjct: 287 AREINDSQPDYVVEKIKDLLGA-LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGA 345
Query: 359 RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCI 418
++ YDP V E+++ L + D EA K A + I
Sbjct: 346 KVKAYDPLVPEEEV--------------KGLPSID-----------DLEEALKGADALVI 380
Query: 419 LTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448
LT+ EFK LD ++I D M+ V D RN
Sbjct: 381 LTDHSEFKDLDLEKIKDLMKGK-VVVDTRN 409
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 8e-73
Identities = 86/191 (45%), Positives = 116/191 (60%), Gaps = 11/191 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
++I IG GYVG PT +A +V VDI+ S+I+ N+ ++PIYEPGL+ ++K
Sbjct: 1 MRIAVIGLGYVGLPTAVCLAEIG--HDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKAN 58
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
L F+TDV + + EAD++F++V TP+K G A DLTY ESAAR I V K
Sbjct: 59 VETGRLRFTTDVAEAIKEADVIFIAVPTPSKKDG----GAPDLTYVESAARTIGPVLKKG 114
Query: 121 KIVVEKSTVPVKTAEA-IEKILTHNSK---GIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K+VV KSTVP T E ++ IL S G+ F + SNPEFL EG A+ DL NPDRV+I
Sbjct: 115 KVVVVKSTVPPGTTEEVVKPILEKRSGKKFGVDFNVASNPEFLREGNALHDLLNPDRVVI 174
Query: 177 GGRETPEGQKA 187
G E ++
Sbjct: 175 GVTEECAEERL 185
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 1e-55
Identities = 145/472 (30%), Positives = 204/472 (43%), Gaps = 57/472 (12%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
I IG GYVG P A A +V VDI+ +++ N + I EP LD VVK+
Sbjct: 9 SATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKE 66
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
+T + + E D+ + V TP L + DL+Y ESAAR IA V K
Sbjct: 67 AVESGKLRATTDPEELKECDVFIICVPTP-----LKKYREPDLSYVESAARSIAPVLKKG 121
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIK----FQILSNPEFLAEGTAIQDLFNPDRVLI 176
+V+ +ST P T E + K L G+K F + +PE + G +++L N +V I
Sbjct: 122 DLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKV-I 180
Query: 177 GGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236
GG TP+ + AL Y V E I T+ +AE+ KL N F I+ N ++ +
Sbjct: 181 GG-VTPKCAELAAAL---YKTIV-EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235
Query: 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP----EV 292
C A G +V +V A T R+ G GG C D L + GLP
Sbjct: 236 CNAMGIDVWEVIEAANTKPRVNI--FYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRT 293
Query: 293 AEYWKQVIKINDYQKSRFVNRVVASMFNT---VSNKKIAVLGFAFKKDTGDTRETPAIDV 349
A +IND V+RV ++ +S KI VLG A+K D D RE+PA+D+
Sbjct: 294 AR------EINDSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDI 347
Query: 350 CKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEA 409
+ L + +YDP V E D V++ EA
Sbjct: 348 IELLEEWGGEVLVYDPYVKELPT---------REDGEG------------VTLAILE-EA 385
Query: 410 TKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFI 461
KDA V I T+ EFK +DY+ I + + D RNV + G
Sbjct: 386 LKDADAVVIATDHSEFKEIDYEAIGKEAK---VIVDTRNVWKREREAAKGIG 434
|
Length = 436 |
| >gnl|CDD|201536 pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose dehydrogenase family, central domain | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 8e-42
Identities = 52/98 (53%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGF 268
L +AE+ K AANAFLA +IS +N ++ +CEA GA+VS+VA A G D RIG KFLN GF
Sbjct: 1 LKTAEMIKYAANAFLATKISFINELANICEAVGADVSEVARAAGLDPRIGRKFLNPGPGF 60
Query: 269 GGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQ 306
GGSCF KD L Y E GLP A +V+ +N Q
Sbjct: 61 GGSCFPKDPYALTYKAEELGLP--ARLLGRVVNVNMPQ 96
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 96 |
| >gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 2e-35
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 21/124 (16%)
Query: 328 AVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387
AVLG AFK +T D RE+PA+D+ + LL + A + +YDP V E+ I+
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPEEAIEALG----------- 49
Query: 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447
V++V D EA K A + ILT+ DEF++LD+ +I M KP VFDGR
Sbjct: 50 ---------EDGVTLVDDLEEALKGADAIVILTDHDEFRSLDWAKIKKLM-KPPVVFDGR 99
Query: 448 NVVD 451
NV+D
Sbjct: 100 NVLD 103
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 103 |
| >gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-29
Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 25/124 (20%)
Query: 328 AVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387
AVLG AFK +T D RE+PA+D+ + LL A + +YDP E+ + LT
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAMEEAREYGLT---------- 50
Query: 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447
V D EA K A V I TE DEF++LD + + D M+KP V DGR
Sbjct: 51 --------------YVSDLEEALKGADAVVIATEHDEFRSLDPEELKDLMKKP-VVVDGR 95
Query: 448 NVVD 451
N++D
Sbjct: 96 NILD 99
|
The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99 |
| >gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 110/370 (29%), Positives = 167/370 (45%), Gaps = 44/370 (11%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC- 61
I IG GY+G PT A A + +V VDI+ ++ N ++ I EP LD VVK
Sbjct: 5 TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAV 62
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
G L +T E AD ++V TP K DLTY E+AA+ IA V K
Sbjct: 63 EGGYLRATTTPE----PADAFLIAVPTPFK-----GDHEPDLTYVEAAAKSIAPVLKKGD 113
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNP 171
+V+ +ST PV E + + L + F I PE + G + +L
Sbjct: 114 LVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKN 173
Query: 172 DRVLIGGRETPE-GQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230
DRV IGG TP +A ++Y ++ E + TN +AE+ KL N+F I+
Sbjct: 174 DRV-IGGM-TPVCSARAS----ELYKIFL-EGECVVTNSRTAEMCKLTENSFRDVNIAFA 226
Query: 231 NAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290
N +S +C G NV ++ R+ L G GG C D +V P
Sbjct: 227 NELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQN-----P 279
Query: 291 EVAEYWKQVIKINDYQKSRFVNRVVASM--FNTVSNK-----KIAVLGFAFKKDTGDTRE 343
+ A + ++ND + +++V A++ ++K KIA G AFK + D RE
Sbjct: 280 QQARLIRTAREVNDGKPHWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRE 339
Query: 344 TPAIDVCKGL 353
+PA+++ + +
Sbjct: 340 SPAMEIAELI 349
|
Length = 415 |
| >gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 111/394 (28%), Positives = 171/394 (43%), Gaps = 52/394 (13%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ- 60
+KI G GYVG +IA + EV +DI SR+ N PI +D ++Q
Sbjct: 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPI----VDKEIQQF 53
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARVIADV 116
+ + F+ ++K+ + D +V + TPT KT S VI DV
Sbjct: 54 LQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNT---------SSVESVIKDV 104
Query: 117 SK--SDKIVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDR 173
+ ++V KSTVPV TA +K T N I+ +PEFL EG A+ D +P R
Sbjct: 105 VEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSR 157
Query: 174 VLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233
++IG R + A + +P L T+ AE KL AN +LA R++ N +
Sbjct: 158 IVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNEL 214
Query: 234 SALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV--YICECNGLPE 291
+ E+ G N Q+ V D RIG + N S G+GG C KD L+ Y N L
Sbjct: 215 DSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNL-- 272
Query: 292 VAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCK 351
+ I D ++R +A + + + + K + + R + + K
Sbjct: 273 -------ISAIVDANRTR--KDFIADAILSRKPQVVGIYRLIMKSGSDNFRASSIQGIMK 323
Query: 352 GLLGDKARLSIYDPQVTED-----QIQRDLTMNK 380
+ + IY+P + ED +++RDL K
Sbjct: 324 RIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFK 357
|
Length = 388 |
| >gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 43/388 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
VKI IG GYVG P +AV K S +V D++ RI + + L+ ++
Sbjct: 7 VKIAIIGLGYVGLP-LAVEFGK--SRQVVGFDVNKKRILELKNG----VDVNLETTEEEL 59
Query: 62 R-GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R + L F++++EK + E + ++V TP T K DLT A+ + V
Sbjct: 60 REARYLKFTSEIEK-IKECNFYIITVPTPINTY-----KQPDLTPLIKASETVGTVLNRG 113
Query: 121 KIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQ----ILSNPEFLAEGTAIQDLFNPDRVL 175
IVV +STV P T E IL S G+ F + +PE + G L N ++
Sbjct: 114 DIVVYESTVYPGCTEEECVPILARMS-GMTFNQDFYVGYSPERINPGDKKHRLTNIKKIT 172
Query: 176 IGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + + + +VY + ++ AE +K+ N I+ VN ++
Sbjct: 173 SGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAI 227
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGF-GGSCFQKDILNLVYICECNGLPEVAE 294
+ + V A G+ FL G GG C D L + + G
Sbjct: 228 IFNRLNIDTEAVLRAAGSKW----NFLPFRPGLVGGHCIGVDPYYLTHKSQGIG------ 277
Query: 295 YWKQVI----KINDYQKSRFVNRVVASMFN---TVSNKKIAVLGFAFKKDTGDTRETPAI 347
Y+ ++I ++ND + +++ +M V + +LGF FK++ D R T I
Sbjct: 278 YYPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRII 337
Query: 348 DVCKGLLGDKARLSIYDPQVTEDQIQRD 375
DV K L ++ I+DP V ++++R+
Sbjct: 338 DVVKELGKYSCKVDIFDPWVDAEEVRRE 365
|
Length = 425 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 480 | |||
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 100.0 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 100.0 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 100.0 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 100.0 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 100.0 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 100.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.98 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.96 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.96 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.96 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.96 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.96 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.95 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 99.94 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.94 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.94 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.94 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 99.94 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.92 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.92 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.89 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.89 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.86 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.85 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.85 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.84 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.8 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.79 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.78 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.78 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.78 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.76 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.76 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.76 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.73 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.72 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.71 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.68 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.68 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.68 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.68 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.66 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.64 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.64 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.63 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.61 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.6 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.59 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.59 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.56 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.53 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.53 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.52 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.5 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.49 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.48 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.47 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.47 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.47 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.43 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.43 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.42 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.42 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.41 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.41 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.41 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.4 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.4 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.4 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.34 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.31 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.31 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.3 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.29 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.28 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.28 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.27 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.22 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.22 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.19 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.19 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.13 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.13 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.13 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.12 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.11 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.07 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 99.01 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.99 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.95 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.92 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.92 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.86 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.81 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.8 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.77 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.73 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.66 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.65 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.64 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.64 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.59 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.56 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.56 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.55 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.55 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.53 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.51 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.51 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.51 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.48 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.48 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.44 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.39 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.38 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.37 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.37 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.37 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.36 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 98.33 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.32 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.32 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.31 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.3 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.29 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.27 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.26 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.22 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.17 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.16 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.16 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.14 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.14 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.13 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.13 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.13 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.12 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.11 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.08 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 98.06 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.06 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.05 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.0 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.97 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.95 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.93 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.91 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.91 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.89 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.87 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.87 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.86 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.85 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.84 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.83 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.78 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.78 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.78 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.76 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.76 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.75 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.7 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.7 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.69 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.69 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.69 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.69 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.68 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.68 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.63 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.63 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.61 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.61 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.6 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.58 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.56 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.56 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.54 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.53 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.53 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.53 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.52 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.5 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.49 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.49 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.49 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.48 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.48 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.47 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.47 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.45 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 97.44 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.43 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.43 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.43 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.42 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.41 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.4 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.37 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.36 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.36 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.35 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.34 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.34 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.33 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.33 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.32 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.31 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.3 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.29 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.29 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.28 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.28 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.28 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.26 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.25 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.22 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.22 | |
| PLN00106 | 323 | malate dehydrogenase | 97.2 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.19 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.19 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.17 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.14 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.14 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.14 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.13 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.12 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.1 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.07 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.06 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.06 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.06 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.05 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.04 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.99 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.99 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.99 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.95 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.95 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.94 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.92 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.88 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.84 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.83 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.83 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.8 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.79 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.79 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.78 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.78 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.77 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.77 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.77 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.76 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.76 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 96.76 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.75 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.72 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.72 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.72 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.71 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.71 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.71 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.71 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.71 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.71 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.7 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.7 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.68 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.65 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 96.64 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.64 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.64 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.63 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.62 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.62 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.62 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.58 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.57 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.57 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.56 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.56 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.56 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.55 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.54 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.52 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.49 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.46 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.44 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.44 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.43 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.43 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.39 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.36 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.36 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.31 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.3 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.29 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.27 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.26 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.25 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.24 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.22 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 96.19 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 96.18 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.18 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.17 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.16 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.09 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.07 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.07 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.05 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.04 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.04 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.01 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.01 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.99 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.98 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 95.93 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.91 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.91 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.91 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.89 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.89 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.87 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.87 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.83 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.82 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.81 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.79 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.75 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 95.74 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.74 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.7 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.67 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 95.67 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.66 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.63 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.63 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.63 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.62 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.62 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.6 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.59 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.58 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.58 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.57 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.57 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.56 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.54 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.53 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.53 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.52 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.52 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.51 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.5 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.5 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.47 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 95.47 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.44 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.43 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.41 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.41 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.39 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.39 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.38 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.38 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 95.37 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.36 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.34 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.34 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 95.34 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.32 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.28 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.25 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 95.23 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.23 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.19 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.19 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.18 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.17 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.16 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.15 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.14 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.14 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.12 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.11 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.11 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.1 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.1 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.09 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.05 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.04 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.04 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.02 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.02 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.02 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 95.01 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.0 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.99 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 94.98 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.97 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 94.97 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.97 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.96 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.96 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.91 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.91 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.89 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.89 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.89 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 94.87 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.87 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 94.86 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 94.83 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.82 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.81 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.8 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.76 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.67 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 94.64 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 94.64 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.59 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.59 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.58 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 94.57 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.57 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 94.56 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.43 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.43 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 94.42 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.41 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.38 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 94.37 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 94.36 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.34 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 94.29 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.28 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 94.26 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.26 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 94.22 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 94.22 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 94.21 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 94.21 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.2 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 94.17 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 94.16 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 94.14 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 94.13 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 94.11 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.11 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.11 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 94.1 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 94.1 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.09 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.05 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 94.02 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.02 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 94.0 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 93.99 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.96 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.95 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 93.89 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 93.88 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.88 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 93.87 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 93.86 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.86 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.85 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.85 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 93.84 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.8 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 93.79 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 93.78 | |
| PTZ00245 | 287 | ubiquitin activating enzyme; Provisional | 93.78 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 93.74 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.72 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.71 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.71 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.7 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 93.7 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 93.67 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.67 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.66 |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-101 Score=804.02 Aligned_cols=473 Identities=93% Similarity=1.429 Sum_probs=436.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+||||+++|..||++++|++|+++|++++++++|++|..++.|+++++++.+...+++++|+++.+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999987446889999999999999999999999999999987644456999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||.+.++.+++..+|++++++++++|+++++++++||.+||+||||++.+.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999987644333458999999999999999999999999999999999999988777644367899999999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
||++++++.+|++||+|+.++.+.+++.++++++|+.+.+..++..+++++||++|+++|+|++++|+|+||++.+|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875444466889999999998744577889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhcC
Q 011641 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~ 320 (480)
|+|+.+|+++++++||+|++|++||+||||||||||+++|++.++++|+++.++++++++++|++||+++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998767899999999999999999999998877
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.++++||+|||+||||||+|+|+||+++|++.|+++|++|.+|||++..++..+.++..+++|++|++++++|+....++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 78999999999999999999999999999999999999999999999887665566667899999999999998888779
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCccc
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWL 473 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
++++++++++++||+||++|+|++|++++|+.+.+.|+.|++|||+||+++++.+++.||+|+|+||+.+|||
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~~~~~~~ 473 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCCCCCCCC
Confidence 9999999999999999999999999999999999999887789999999999999999999999999999997
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-97 Score=696.38 Aligned_cols=480 Identities=86% Similarity=1.352 Sum_probs=463.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|||-||+||+|.|..+.+|.++|..+|+++|++..++++||+.+.|+||||+++.+++.+..++.|++|.+.+++++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||++|.||....|.|.+..+|++|++++.+.|+......+||+.+||+|+.+.+.+..+|.+...|..|.++++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999998888888899999999999999999999999999999999999999999997666688999999999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+|.+++++++|+|++|||..+.....+.+.+..+|++..+...+.+++.+++|+.||+.|+|++..|+.+|.|..+||..
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999987766677888899999999987789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhcC
Q 011641 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~ 320 (480)
|+|+.+|..++++|+|||++|++.+.||||+||.||+..|+++++.+|+|+++.+|++++.+|++|+.+.++++...|+.
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc-cc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV-KQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 399 (480)
..+++||+|||++||.+|.|+|+||++.+.+.|++.++...+|||.+.++++.+++.+..++|+||+|++++++... +.
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~k~ 400 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVSKQ 400 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999965 77
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCcccccCCCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+++..++|+|+++|+++||+|+|+||++||+++|.+.|.+|++|||+||++|.+++++.||+.+.||.+.++|+++||++
T Consensus 401 VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~~dq~~~~~~a~ 480 (481)
T KOG2666|consen 401 VTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKPLDQWLKDMPAV 480 (481)
T ss_pred eeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCChHHhhcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011641 480 A 480 (480)
Q Consensus 480 ~ 480 (480)
+
T Consensus 481 g 481 (481)
T KOG2666|consen 481 G 481 (481)
T ss_pred C
Confidence 5
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-95 Score=716.28 Aligned_cols=412 Identities=42% Similarity=0.698 Sum_probs=385.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+..|.+||+. ||+|+++|+++++++.|++|..|++|||+++++.+ ...+++++|+|.+++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999998 99999999999999999999999999999999986 55678999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||...+| +.|+++++++++.|.++++..++||.+|||||||++.+.+.+.+...+.+|.++++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999998865 8999999999999999999889999999999999999988776654445899999999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC-CCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP-EDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~-~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
+|+|++++++|+|+|+|.. ++++.+.+++||..+.. ..++..++.++||++||+.|+|++++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~----~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR----SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC----ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 45678889999987532 356888999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
.|+|.++|.++++.|+|||.+|++||+||||+|||||+..|+..|++.|++ ..+++++.++|+.|+.++++++.+.++
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 789999999999999999999999875
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+++++|+||||+|||||||+|+||++.|++.|++.|++|++|||.+.++.... +++
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~----------------------~~~ 363 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN----------------------FPD 363 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc----------------------CCC
Confidence 89999999999999999999999999999999999999999999998765321 236
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~ 453 (480)
+.++.++++++++||++|+.|.|++|+++||+.+ .|+.| +|||+||+++++
T Consensus 364 ~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~~ 414 (414)
T COG1004 364 VELESDAEEALKGADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDPD 414 (414)
T ss_pred ceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCCC
Confidence 7899999999999999999999999999999998 89988 899999999863
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-94 Score=701.32 Aligned_cols=418 Identities=35% Similarity=0.480 Sum_probs=378.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||||||||+|+|..||++ |++|+|+|+|+.+++.+|+|..++.|+++++++++ +..|++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999997775 66788999999988 78999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHH-HHHhcCC---CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK-ILTHNSK---GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~~~~---g~~~~v~~~P 156 (480)
++|||||||.+. ...||+++++++++.|++.|++|++||.+||++||||+++.. ++++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~-----~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKK-----YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCC-----CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999976 359999999999999999999999999999999999999765 4554343 6799999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||..||+..+.+.+.++| +||. ++++.+.++.+|+.+.. ..+.++++++||++|+.+|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kV-IgG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-IGGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCce-eecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998 5777 48899999999999985 47788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++|| .+.++||||+||||+|.||+||++.|+++|.+ +++++.++++|+.||.|++.++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 48899999999999999999999999999998 899999999999999999999988
Q ss_pred Hh---cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 317 ~l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.| ++.+++++|+|+|||||+|++|+||||+++|++.|.++|++|.+|||++.... ....+
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~-~~~~~---------------- 374 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELP-TREDG---------------- 374 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcch-hhhhc----------------
Confidence 55 56889999999999999999999999999999999999999999999998643 11110
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecC
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 467 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
..++ ..+++++++++|+|||+|+|++|+.+||+.+.+. .+ +|||+||++++.... +.+||+
T Consensus 375 ----~~~~-~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~--~~-vivDtrnV~~~~~~~-----~~~i~~ 435 (436)
T COG0677 375 ----EGVT-LAILEEALKDADAVVIATDHSEFKEIDYEAIGKE--AK-VIVDTRNVWKREREA-----AKGIGR 435 (436)
T ss_pred ----cccc-hhhHHHHhccCCEEEEEeccHHhhcCCHHHhccC--Cc-EEEECccccchhhhh-----hhcccC
Confidence 1122 3678999999999999999999999999998765 34 999999999977554 566665
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-82 Score=653.05 Aligned_cols=407 Identities=23% Similarity=0.308 Sum_probs=358.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+||||++||.+|++ ||+|++||+++++++.|++|..|+.|++++++... +++.++++.+ ++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCC
Confidence 3899999999999999999886 69999999999999999999999999999998653 6788998876 589999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcCC---CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNSK---GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~---g~~~~v~~~P 156 (480)
++|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++..+ +.+|+++|+|
T Consensus 79 vvii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~P 153 (425)
T PRK15182 79 FYIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSP 153 (425)
T ss_pred EEEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCC
Confidence 99999999986644 7999999999999999999999999999999999997 4566665322 4679999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||+.+|.+..++.+++++|+|+. +++.+.++++|+.+.....++.+++++||++|+++|+|++++|+|+||++.+
T Consensus 154 E~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 154 ERINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred CcCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999977653 6788899999999863346788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++|++++++++++ ..+.||+ |||||||||+++|++.+++.|+. ++++++++++|+.||+++++++++
T Consensus 229 ae~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~ 303 (425)
T PRK15182 229 FNRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIK 303 (425)
T ss_pred HHHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999743 2345666 99999999999999999999988 789999999999999999999999
Q ss_pred Hh---cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 317 ~l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+ +++++++||+|||+||||||+|+|+||+++|++.|.++|++|.+|||++..+...+.++
T Consensus 304 ~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~---------------- 367 (425)
T PRK15182 304 AMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG---------------- 367 (425)
T ss_pred HHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC----------------
Confidence 87 35688999999999999999999999999999999999999999999987655433221
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~ 453 (480)
.... .+.++++||+|||+|+|++|+++||+.+.+.|+.|.+|||+||+++.+
T Consensus 368 ------~~~~--~~~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 368 ------IIPV--SEVKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred ------cccc--hhhhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 1001 123578999999999999999999999999887655999999999853
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=636.88 Aligned_cols=406 Identities=40% Similarity=0.622 Sum_probs=371.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++|..+++|+++++++.+. ..+++++++++++++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999998 999999999999999999999999999999988652 3466899999998899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHH-HHHHhcC--C-CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIE-KILTHNS--K-GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (480)
+||+|||||...++ .+|++++.++++++.+.++++++|+++||++|||++++. +++++.. . +.+|+++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999986644 899999999999999999999999999999999999985 5555522 1 4678999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
|++.+|.+..++.+++++++|++ +++.++++++|+.++.+.+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998854 7899999999999862246788999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++++++.+++.||+||||+|++||++++.+.|++.|++ .+++++++++|++||+++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 789999999999999999999999
Q ss_pred HhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.| +.+++++|+|||+||||||+|+|+||++.|++.|+++|++|.+|||++..+....
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~---------------------- 363 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG---------------------- 363 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh----------------------
Confidence 88 5789999999999999999999999999999999999999999999998765321
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
+..+.+++++++++|+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 364 ---~~~~~~~~~~~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 364 ---LPLIDDLEEALKGADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred ---cccCCCHHHHHhCCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 11256889999999999999999999999999999999887 9999997
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-78 Score=624.61 Aligned_cols=394 Identities=29% Similarity=0.423 Sum_probs=348.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|+||++||.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...|+++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 58999999999999999999998 99999999999999999999999999999998764 345778887753 479
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC---------C-CCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---------K-GIK 149 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~---------~-g~~ 149 (480)
|+||+|||||.+.++ .+|++++++++++|.++++++++||++||++||+++++...+.+.+ + +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999986644 8999999999999999999999999999999999999887665532 1 357
Q ss_pred eEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHH
Q 011641 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
|.++|+|||+.+|.+..++.++++++ ||. ++++.++++++|+.+.+ ..++.+++++||++|+++|+|++++|++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~----~~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGM----TPVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeC----CHHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999875 775 37899999999999974 4567789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHH
Q 011641 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR 309 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (480)
+||++.+|+++|+|+.+|+++++++||+ .+++||+||||||||||+++|.+ +.+.. .+++++++++|+.||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~---~~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVA---QNPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHH---hcCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 68899999999999999999965 34444 68999999999999999
Q ss_pred HHHHHHHHh-------cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChHHHHHhhhcccc
Q 011641 310 FVNRVVASM-------FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTEDQIQRDLTMNKF 381 (480)
Q Consensus 310 ~~~~~~~~l-------~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~ 381 (480)
+++++.+.+ ++.++++||+|||+|||+||+|+|+||+++|++.|+++| ++|.+|||++...... +
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~--~----- 371 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK--L----- 371 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh--c-----
Confidence 999999876 456789999999999999999999999999999999996 9999999998653211 0
Q ss_pred CCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 382 DWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
...+. ..++++++++||+||++|+|++|+++||+++ ..| +|||+
T Consensus 372 ---------------~~~~~-~~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~----~~~-~v~D~ 415 (415)
T PRK11064 372 ---------------DGLVT-LVSLDEALATADVLVMLVDHSQFKAINGDNV----HQQ-WVVDT 415 (415)
T ss_pred ---------------cCcee-eCCHHHHHhCCCEEEECCCCHHhccCCHHHh----CCC-EEEeC
Confidence 01223 3789999999999999999999999999875 345 89995
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-78 Score=619.15 Aligned_cols=374 Identities=25% Similarity=0.365 Sum_probs=331.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||||+++|..|+ . ||+|++||+++++++.+++|..++.|+++++++.+. .++++++++..+++++||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998888 4 899999999999999999999999999999987642 3567778888888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||||.+.. ...+|++++++++++|.+ ++++++||++||++|||++++.+.+.+ +.+.|+|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999997542 237899999999999988 688999999999999999999877654 357899999999
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHH-hccCCCC-eEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY-AHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~-~~~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
|++++++++|++||+|+. ++..+++.++| ..+.... +++.+++++||++|+++|+|++++|+|+||++.+|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 34556666666 4433222 2357899999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.+ .+++ .+++++++++|+.||+++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999998766 4455 6899999999999999999999873
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
++++|+|||+||||||+|+|+||+++|++.|+++|++|.+|||++..... .+
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~-------------------------~~ 346 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSF-------------------------FN 346 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhh-------------------------cC
Confidence 67899999999999999999999999999999999999999999865431 14
Q ss_pred eEEecCHHhhcccccEEEEEecCccccccc
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLD 429 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~ 429 (480)
+.+++++++++++||++++.|.|+||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK15057 347 SRLERDLATFKQQADVIISNRMAEELKDVA 376 (388)
T ss_pred CeeeCCHHHHHHhCCEEEEcCCcHHHHhhh
Confidence 789999999999999999999999998753
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=287.97 Aligned_cols=182 Identities=42% Similarity=0.640 Sum_probs=149.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+++|..||++ ||+|+++|+|+++++.|++|..|++||++++++++ ...+++++++|.++++.+||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 99999999999999999999999999999999987 44789999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcCC-CCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNSK-GIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~-g~~~~v~~~Pe~ 158 (480)
++|+|||||.+.++ .+|++++++++++|+++++++++||++||+||||+++ +.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998754 8999999999999999999999999999999999995 5678887654 468999999999
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDV 194 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l 194 (480)
+.||+++.++.++++|++|+. ++.+.+++++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~----~~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCD----DESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEES----SHHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCC----cHHHHHHHhcC
Confidence 999999999999999998876 35555566654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-31 Score=255.49 Aligned_cols=248 Identities=21% Similarity=0.235 Sum_probs=208.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++++ ++.+... +.+..+++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999999 5555441 2455677788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||.+ ..+++++ ..+.+.+++++++|++||+.|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999854 2456666 57889999999999999999999999999998865 34579999
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..++..+..+.+ .|++|++ ++.+++++++|+.+++ ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766655 5889986 8999999999999974 567788889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+++|+|++.+.++++...-.+| +++ .+.|||....+.||+.+..+.|++.|++ .++...+
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~ 261 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALA 261 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHH
Confidence 9999999999999997632222 122 3667899999999999999999999998 4444443
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-29 Score=291.11 Aligned_cols=382 Identities=10% Similarity=0.048 Sum_probs=283.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||||||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +.+.++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999998 99999999999999988752 23556788998999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .+++++ +++.+.++++++||++||+.|.+++++.+.+.+.+. ...++.+|..
T Consensus 64 Vi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAYVS 127 (1378)
T ss_pred EEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEccCc
Confidence 999998652 345554 578888889999999999999999999888877541 2456799988
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+..+..+.. .+++||+ ++.+++++++|+.++. ..+++ ++.+++..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765544433 4788986 7899999999999874 34444 7899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHH-----h
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI-----N 303 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~-----N 303 (480)
++.|+|++.++++++..+.-++ .++ .+.+||....+.||+.+..++|++.|++ .++...+.+. +
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQLISGSS 276 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHh
Confidence 9999999999999987642111 122 3456788999999999999999999998 4444444321 1
Q ss_pred H-----HhHHHHHHHHHHHhc-----------------------CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHh
Q 011641 304 D-----YQKSRFVNRVVASMF-----------------------NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG 355 (480)
Q Consensus 304 ~-----~~~~~~~~~~~~~l~-----------------------~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~ 355 (480)
. .+. .+++.+.+..+ ++-..++|+++|+.. ....+++.|.+
T Consensus 277 ~G~g~~D~s-av~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~----------MG~~mA~~L~~ 345 (1378)
T PLN02858 277 SMQGDDTAT-SLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGA----------MGFGMASHLLK 345 (1378)
T ss_pred cCCCccChH-HHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchH----------HHHHHHHHHHH
Confidence 1 111 11221111000 011237899999965 78999999999
Q ss_pred CCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcc-cccc--cHHH
Q 011641 356 DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDE-FKTL--DYQR 432 (480)
Q Consensus 356 ~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~--~~~~ 432 (480)
.|++|.+||+.....+.... .+.....++.++++++|+|++++.-++ .+++ ....
T Consensus 346 ~G~~V~v~dr~~~~~~~l~~----------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 346 SNFSVCGYDVYKPTLVRFEN----------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCCEEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 99999999986543322211 123346788999999999999999765 2221 1223
Q ss_pred HHHhcCCCCEEEEcCCCCChh------hhhh--cCcEEEE
Q 011641 433 IYDNMQKPAFVFDGRNVVDAN------KLRE--IGFIVYS 464 (480)
Q Consensus 433 ~~~~~~~~~~viD~~~~~~~~------~~~~--~g~~y~~ 464 (480)
+...+++..+|||+..+-... .+.+ .|+.|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 455566667999998776532 2233 5766644
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=242.82 Aligned_cols=252 Identities=16% Similarity=0.156 Sum_probs=199.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999887753 1234567778889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||++. +++.+....+.+.+.+++++++|++||++|.+++++.+.+.+.+ +.++.+|....
T Consensus 60 vVi~~vp~~~-----------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV~g~ 124 (296)
T PRK15461 60 FVITMLPNGD-----------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPVGRT 124 (296)
T ss_pred EEEEecCCHH-----------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccCCCC
Confidence 9999998642 12222222245677788899999999999999999988887654 33568888766
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+..+..+.. .+++||+ ++.+++++++|+.++. ..++.++.+.|..+|+++|.+...+++.++|...+|++.
T Consensus 125 ~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~ 195 (296)
T PRK15461 125 SDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEAL 195 (296)
T ss_pred HHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 554443322 3678885 7899999999999974 567778999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCC-------C-CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHH
Q 011641 241 GANVSQVAFAVGTDSRIG-------P-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~-------~-~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
|+|++.++++++..+... . .++ .+.++|....+.||+.+..+.|++.|++ .++.+.+
T Consensus 196 Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~ 262 (296)
T PRK15461 196 GLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAAS 262 (296)
T ss_pred CCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHH
Confidence 999999999997543110 1 121 2345788889999999999999999998 4554443
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=240.41 Aligned_cols=250 Identities=18% Similarity=0.242 Sum_probs=200.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++.+.+. +...++++++++++||
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 58999999999999999999998 99999999999998877642 2345677888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+++.+.+.+++.+ +.++++|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g----~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKG----IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcC----CcEEEcCC
Confidence 9999998642 234443 45778888999999999999999999888887643 34578998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
+..+..+..+.. .+++|++ +++++.++++++.++. ..++.++.+.|+.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544332 4778875 7789999999999863 456677889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|++++.+.+....-. .++++ .+.+||...++.||..++.+++++.|++ .++++.+.
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 263 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVM 263 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999999754210 11111 2346789999999999999999999998 55555544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=240.11 Aligned_cols=248 Identities=19% Similarity=0.223 Sum_probs=196.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||+|||+|.||.+||..|+++ |++|++||+++++++.+.+. +...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA-------------------GAVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCcccCCHHHHHhcCCEE
Confidence 699999999999999999998 99999999999998887652 122345677788999999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||++. .++.++ +++.+.++++++|++.||+.|++++++.+.+++.+ +.++.+|.+.
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g----~~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKG----IDYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CCEEecCCCC
Confidence 99998632 233333 45667788899999999999999999888887653 3456789877
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+..+..+.. .+++|++ ++++++++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGTL---SIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCCE---EEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544322 4778875 7899999999999873 45666677999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 240 TGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|+|++++.++++.....++ ++. .+.+||+..|+.||+.++.+.+++.|++ .++++.+.
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~ 260 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQ 260 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 99999999999985421111 111 1246799999999999999999999998 55555443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=234.27 Aligned_cols=245 Identities=17% Similarity=0.144 Sum_probs=198.0
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEe
Q 011641 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVS 85 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (480)
|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999998 99999999999999888752 234567788889999999999
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccccc
Q 011641 86 VNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEG 162 (480)
Q Consensus 86 Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
||++. .+++++ +++.+.++++++||++||+.|++++++.+.+++.+ ..++++|....+.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g----~~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG----AVFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEECCCCCCHH
Confidence 99642 235555 67888888999999999999999999988887653 2457899887776
Q ss_pred ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCC
Q 011641 163 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gi 242 (480)
.+..+.. .+++||+ ++.+++++++|+.++. ..++.++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5544432 4678886 6789999999999873 45677788999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCCC---------C-----c--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 243 NVSQVAFAVGTDSRIGPK---------F-----L--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 243 d~~~v~~~~~~~~~~~~~---------~-----~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++++.++++..+.-++. . . .+.++|....+.||+.+..+.|++.|++ .++.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 264 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALAR 264 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999865311110 0 1 2345677778899999999999999998 55555443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=232.75 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=193.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. +.....++.++++.||+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999998 999999999875 4444321 23445677788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ .++.+.+.++++||++||+.|.+++++.+.+.+.+ . .++.+|..
T Consensus 59 Vi~~v~~~--------------~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~--~~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDT--------------PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--G--DYLDAPVS 120 (292)
T ss_pred EEEeCCCh--------------HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--CEEEecCC
Confidence 99999964 2345554 23566678899999999999999999988887764 2 34678877
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+..+.. .+++||+ ++++++++++|+.++. ..++.++.+.|..+|+++|.+.+.+++.++|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544433221 4678886 7899999999999974 5677888999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~ 298 (480)
+.|+|+++++++++..+.- +++++ .+.++|....+.||+.+..+.|++.|++ .++.+.
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~ 258 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTAT 258 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHH
Confidence 9999999999999765311 11222 2346789999999999999999999998 444443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=223.54 Aligned_cols=241 Identities=17% Similarity=0.235 Sum_probs=198.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++||+||+|.||.+|+.+|.++ ||.|++|||+.++++.+.+. +.++..+|.|+++.||+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 6899999999999999999999 99999999999999988763 23556789999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
||.|||+|.+. ++++ ..+...++++... |++||+.|.+.+++.+.++... ...+.+|.
T Consensus 95 vitmv~~~~~v--------------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPV 156 (327)
T KOG0409|consen 95 VITMVPNPKDV--------------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPV 156 (327)
T ss_pred EEEEcCChHhh--------------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccc
Confidence 99999987543 3333 3444555666655 8999999999999988887653 34679998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
......+..+.+ .|++||+ ++.++.+.++|+.+++ ..++.+..+.+..+|+.+|...+.++..+.|...|+
T Consensus 157 SGg~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la 227 (327)
T KOG0409|consen 157 SGGVKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALA 227 (327)
T ss_pred cCCchhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877655655554 4788875 8899999999999974 566778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCcc---------CCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLN---------ASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~---------pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
+++|+|...+++++++..--++.+.+ +.+||+-..+.||+...++.+.+.+.+
T Consensus 228 ~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 228 DRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999985321222333 345688889999999999999998887
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=195.76 Aligned_cols=106 Identities=42% Similarity=0.664 Sum_probs=88.2
Q ss_pred EEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHH
Q 011641 328 AVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAY 407 (480)
Q Consensus 328 ~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (480)
+|||+|||+||+|+|+||++.|++.|.++|++|.+|||+++.+....... ..+++++++++
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-------------------~~~~~~~~~~~ 61 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK-------------------LEGVEVCDDLE 61 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-------------------HHCEEEESSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-------------------ccceEEecCHH
Confidence 69999999999999999999999999999999999999999887654210 13578889999
Q ss_pred hhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 408 EATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 408 ~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
++++++||+|++|+|++|+.++|+.+...|+++++|||+||++++
T Consensus 62 ~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 62 EALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp HHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred HHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 999999999999999999999999999999777799999999985
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=215.34 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=197.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++++.+.+. +.+.+.+++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999998887642 23456677776665
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++ ..++++++++.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999864 245777788888898999999999999999999888777653 345789988
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+-.+..+. .+++||+ ++++++++++++.++.. ..++.++++.|..+|+++|.+...++..+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765554432 3788986 78999999999998731 35677889999999999999999999999999999
Q ss_pred HHHhC--CCHHHHHHHhcCCCCCCC--------CCccCCCCccccchhHhH---HHHHHHHHHCCCChhhHHHHHHH
Q 011641 237 CEATG--ANVSQVAFAVGTDSRIGP--------KFLNASVGFGGSCFQKDI---LNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 237 ~~~~G--id~~~v~~~~~~~~~~~~--------~~~~pg~g~gG~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+++.| +|+.+++++++.....++ .+..-...+.-..+.||. .+.++.|++.|++ .+++..++
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~ 267 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASL 267 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHH
Confidence 99999 999999999985431111 111100113446778997 7888999999998 56666654
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=225.69 Aligned_cols=252 Identities=13% Similarity=0.088 Sum_probs=200.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
+++|||||+|.||.+||.+|+++ ||+|++|||++++++.+.+.... .|. ..+..+.+++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~Ga---------~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EGN---------LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cCC---------cccccCCCHHHHHhcCC
Confidence 47899999999999999999998 99999999999999988752000 000 013356778887765
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||.+ ..++++++++.+.+.++++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 356778888999999999999999999999999888887764 35678998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..++..+..+ + .+++||+ ++++++++++++.++.+ ..+++++.+++..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G---~-~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG---P-SLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC---C-eEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877655443 2 5889996 78999999999998731 3567788999999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHH---hcCCCCCCC------CCc----cCCCCccccchhHhHH------HHHHHHHHCCCChh
Q 011641 233 MSALCEA-TGANVSQVAFA---VGTDSRIGP------KFL----NASVGFGGSCFQKDIL------NLVYICECNGLPEV 292 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~---~~~~~~~~~------~~~----~pg~g~gG~cl~kD~~------~l~~~a~~~g~~~~ 292 (480)
...++++ +|+|++++.++ ++.++--++ ..+ ..+++|-...+.||.. .....|.++|++
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999998888 444431111 111 1355688889999999 889999999998
Q ss_pred hHH
Q 011641 293 AEY 295 (480)
Q Consensus 293 ~~~ 295 (480)
.++
T Consensus 283 ~p~ 285 (493)
T PLN02350 283 APT 285 (493)
T ss_pred ccH
Confidence 455
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=251.88 Aligned_cols=252 Identities=13% Similarity=0.114 Sum_probs=201.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++|||||+|+||.+||.+|+++ ||+|++||+++++++.+.+. + ....+++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~------------------G-a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA------------------G-GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CeecCCHHHHHhcCC
Confidence 37899999999999999999998 99999999999999887642 1 234567888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||+|. .+++++ .++.+.++++++||++||+.|++++++.+.+++.+ ..+.++++|.
T Consensus 383 vVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 9999999763 234443 45677788999999999999999999988887632 2356789998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
...+..+..+.. .+++||+ ++++++++++|+.++. ..++. +++++|+.+|+++|++.+.+++.++|++.+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544332 4788986 7899999999999874 34443 579999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCC-------CCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++.|+|+++++++++..+.-+ ++++ .+.++|....+.||+.+..+.+++.|++ .++...+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~ 588 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAH 588 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 9999999999999887553211 1122 2346788999999999999999999998 44444433
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=187.11 Aligned_cols=96 Identities=44% Similarity=0.710 Sum_probs=88.1
Q ss_pred chhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCC
Q 011641 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNG 288 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g 288 (480)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|+++++++||++..++.||+||||+|||||+.+|.+.+++.|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhHHh
Q 011641 289 LPEVAEYWKQVIKINDYQ 306 (480)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (480)
.+ ..++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 98 67999999999976
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=209.33 Aligned_cols=281 Identities=19% Similarity=0.226 Sum_probs=198.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++.+++.. ...+.++.. ...++++++++++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 89999999999999999999998 999999999999999988743 222222211 112467788888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec-CCCcchHHHHHHHHHhcCCC-CceEEeeCCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG-IKFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (480)
|+||+|||++ .++++++++.+.++++++|+..+ |+.+.+.+.+.+.+++..+. ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 35778889999888889887776 88888777777777664321 1345667787
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-----------------hhhhHh
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-----------------SKLAAN 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~-----------------~Kl~~N 220 (480)
...+..+ ..+..+++++. +.+..++++++|+..+. .+....+....+| .|+.+|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6543221 12233445554 37789999999997652 3344456554444 788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC----CCC--CCCccCCCCccc--------------cchhHhHHHH
Q 011641 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS----RIG--PKFLNASVGFGG--------------SCFQKDILNL 280 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~----~~~--~~~~~pg~g~gG--------------~cl~kD~~~l 280 (480)
...++..+.++|+..+|+++|+|++.+.+.++... ..+ .+...||.-++. .-..||...+
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 99999999999999999999999999988754320 001 111112221222 2346999999
Q ss_pred HHHHHHCCCChhhHHHHHHHH--HhHHhHHHHHHHHH
Q 011641 281 VYICECNGLPEVAEYWKQVIK--INDYQKSRFVNRVV 315 (480)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~ 315 (480)
.++++++|++ .++.+.+.+ .|+.-|+.+++++.
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLM 323 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 9999999998 566666554 35566776666653
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=203.03 Aligned_cols=267 Identities=16% Similarity=0.140 Sum_probs=199.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++++.+.+. +.+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 7999999999999999999998 99999999999999887642 24556677776664
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++. .++++++.+.+.+++++++|+.||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG----IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC----CEEEeCCCC
Confidence 699999998641 34667788888899999999999999999888887777654 344689988
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC---CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE---DRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~---~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+..+..+. .+++||+ ++++++++++|+.+... ..++.++.+++..+|+++|.+...++..+.|...
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERGY----CLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765554331 4788986 78999999999998731 3567788999999999999999999999999999
Q ss_pred HHHH--hCCCHHHHHHHhcCCCCCCCCCc-------cCCCCcc-ccchhHh---HHHHHHHHHHCCCChhhHHHHHHHH-
Q 011641 236 LCEA--TGANVSQVAFAVGTDSRIGPKFL-------NASVGFG-GSCFQKD---ILNLVYICECNGLPEVAEYWKQVIK- 301 (480)
Q Consensus 236 l~~~--~Gid~~~v~~~~~~~~~~~~~~~-------~pg~g~g-G~cl~kD---~~~l~~~a~~~g~~~~~~~~~~~~~- 301 (480)
++++ .|+|+.+++++++....+++.++ .-.+.+. ..-+-|| .+.....|.+.|++ .+.+..+..
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a~~~ 270 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAALFM 270 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 9999 99999999999986532221111 1112221 1123455 47788889999988 555555321
Q ss_pred -----HhHHhHHHHHHHHHHHh
Q 011641 302 -----INDYQKSRFVNRVVASM 318 (480)
Q Consensus 302 -----~N~~~~~~~~~~~~~~l 318 (480)
.+...+...++-+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 271 RFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHhccCCCcHHHHHHHHHHhc
Confidence 12234555555544444
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=191.10 Aligned_cols=265 Identities=15% Similarity=0.148 Sum_probs=192.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH---hhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+... ....++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g~-------------------~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDRT-------------------TGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-------------------cccCCHHHHHhhcCC
Confidence 7999999999999999999998 9999999999999998876321 11233333 3457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||+. .++++++++.+.++++++||+.||..+.++.++.+.+++.+ +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g----~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG----IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC----CeEEecCCC
Confidence 89999999853 35778899999999999999999998888888777776643 345678876
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+..+..+ ..+++||+ +++++.++++|+.+... ..++.++.+++..+|+++|.+...++..+.|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444433 24788986 78999999999998742 35677889999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCCCCc---------cCCC-Ccccc-chhHhHHHHHHHHHHCCCChhhHHHHHHH---
Q 011641 237 CEAT--GANVSQVAFAVGTDSRIGPKFL---------NASV-GFGGS-CFQKDILNLVYICECNGLPEVAEYWKQVI--- 300 (480)
Q Consensus 237 ~~~~--Gid~~~v~~~~~~~~~~~~~~~---------~pg~-g~gG~-cl~kD~~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++. |+|.+++.++++...-+.+.++ .|.. .|-.. --.+|.+..+..|.+.|+| .+.+.+++
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al~~~ 269 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSLQSR 269 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 9997 5799999999987642222221 1110 11111 1234556677778888888 45555433
Q ss_pred --HHhH-HhHHHHHHHHHHH
Q 011641 301 --KIND-YQKSRFVNRVVAS 317 (480)
Q Consensus 301 --~~N~-~~~~~~~~~~~~~ 317 (480)
..+. ..|..+++.....
T Consensus 270 ~~~~~~~~~~~~~~~~~r~~ 289 (298)
T TIGR00872 270 FASRDLDDFANKVLAALRKE 289 (298)
T ss_pred HHhCCCCCcHHHHHHHHHHh
Confidence 1222 4455555544333
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=203.64 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=172.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc---
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
|++|+|||+|.||.+||.+|+++ ||+|++||+++++++.+++.... ++ ..+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---GN----------TRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---cC----------CcceecCCHHHHHhcCC
Confidence 68999999999999999999998 99999999999999988752100 00 12456778888775
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||.+ ..++++++++.+.+.++++||+.||..+..+.+..+.+.+.+ +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G----i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG----ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEcCCC
Confidence 589999998853 357888899999999999999999998877777766666653 35678998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..++..+..+ +.+++||+ ++++++++++|+.+..+ ...+.++.+++..+|+++|.+.+..+..+.|
T Consensus 128 SGG~~gA~~G----~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARYG----PSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhcC----CEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 8776555433 25889996 88999999999998742 1467788899999999999999999999999
Q ss_pred HHHHHH-HhCCCHHHHHHHhc
Q 011641 233 MSALCE-ATGANVSQVAFAVG 252 (480)
Q Consensus 233 ~~~l~~-~~Gid~~~v~~~~~ 252 (480)
...+++ +.|+|..++.+++.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 79999999988883
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=182.20 Aligned_cols=220 Identities=24% Similarity=0.299 Sum_probs=178.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||.|.||+++|..|+++ ||+|.+|.++++.++++++. .++-|.|+.. ...++.+++|+++++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 3555666542 245789999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+|+++||+ ..++++++++.+.++++.+++..|. +.++|.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs---------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPS---------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECCh---------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 999999996 3578999999889999998888875 577888889898887654333788999998
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeE-EeCCchhHHHh-----------------hhhHh
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELS-----------------KLAAN 220 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v-~~~~~~~ae~~-----------------Kl~~N 220 (480)
..+-.. ..|+.+++++. +++..++++.+|++- ..++ ...|+...|.. ++-.|
T Consensus 138 A~EVa~----g~pta~~vas~----d~~~a~~v~~~f~~~--~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASN----DQEAAEKVQALFSSP--YFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred HHHHhc----CCCcEEEEecC----CHHHHHHHHHHhCCC--cEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 776321 34667888887 588889999999873 2344 44576655544 45677
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+-.++....++||.++...+|.+++++..+.+.
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGl 240 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGL 240 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence 888899999999999999999999888777664
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=171.75 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=122.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. +.+...+++++++.||
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 89999999999999999999998 99999999999999988753 3678899999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHH--HHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARV--IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~--i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||.+ ..+++++.+ +.+.+++++++|++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 456888888 999999999999999999999999999888754 567788887
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
..+..+..+.. .+++||+ ++++++++++|+.++.
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMGK 155 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHEE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHhC
Confidence 66544443322 4788986 7899999999999863
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-20 Score=191.38 Aligned_cols=206 Identities=12% Similarity=0.138 Sum_probs=165.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh---ccC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV---SEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~a 79 (480)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... + ..+..++++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~----g----------~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK----G----------KKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC----C----------CCceecCCHHHHHhhcCCC
Confidence 489999999999999999998 99999999999999988752100 0 0134455666644 468
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ ..++++++++.+.++++++||+.||+.+..+.+..+.+.+.+ +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g----i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG----ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC----CEEEcCCCCC
Confidence 9999999853 346778899999999999999999987777776666666543 3567899887
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
++..+..+. .+++||+ ++++++++++|+.+..+ ...+.++.+++..+|+++|.+.+..+..+.|..
T Consensus 127 G~~gA~~G~----~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKGP----SIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcCC----cCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765554432 4788986 78999999999998742 135778889999999999999999999999999
Q ss_pred HHHH-HhCCCHHHHHHHh
Q 011641 235 ALCE-ATGANVSQVAFAV 251 (480)
Q Consensus 235 ~l~~-~~Gid~~~v~~~~ 251 (480)
.+++ +.|+|..++.+++
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 7999999999888
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=180.91 Aligned_cols=275 Identities=15% Similarity=0.112 Sum_probs=185.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|.||.++|..|+++ ||+|++|++++++++.+++.+ ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999998 999999999999998888532 112212210 012366778888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcch--HHHHHHHHHhcCCCCceEEeeCC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKT--AEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
|+||+|||+. .+++++ +.++++.+++..++ +.+.+ .+.+.+.+++... ..+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ-ARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcC-CCeEEEECc
Confidence 9999999853 123333 45567778887777 56554 5667777654110 123445677
Q ss_pred ccccccccccccCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-----------------chhHHHhhhh
Q 011641 157 EFLAEGTAIQDLFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-----------------LWSAELSKLA 218 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~-~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-----------------~~~ae~~Kl~ 218 (480)
....+...- .+. .++.|++ ++..++++++|+..+. ..+...| .+.+...|+.
T Consensus 136 ~~a~~~~~~----~~~~~~~~~~~-----~~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIARF----LPAATVVASPE-----PGLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHcC----CCeEEEEEeCC-----HHHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 655442211 111 2444443 7789999999998652 2222222 3455667888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCCC-----ccC-------CCCccccchhHhHHH
Q 011641 219 ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD-------SRIGPKF-----LNA-------SVGFGGSCFQKDILN 279 (480)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-------~~~~~~~-----~~p-------g~g~gG~cl~kD~~~ 279 (480)
+|...++..+.++|+..+++++|+|++++++.++.. ++.+.++ +.. .++|...-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 999999999999999999999999999999988741 1111111 111 123455567899999
Q ss_pred HHHHHHHCCCChhhHHHHHHHHH--hHHhHHHHHHHHH
Q 011641 280 LVYICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVV 315 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (480)
+..++++.|++ .++++.+.++ |+.-|+...+.++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLM 321 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999987 5666665543 3345666666554
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=165.01 Aligned_cols=247 Identities=16% Similarity=0.075 Sum_probs=164.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----------CCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|+|||+|.||.++|..|+++ |++|++||++++.++..++.. -.+.+...+.. .+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~-----~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAV-----LARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH-----hcCeEEEC
Confidence 68999999999999999999998 999999999998877643210 00000001111 13578899
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF 150 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
++++++++||+|++|+|... ......++.+.+..+++.++ .+||.+ -....+.+.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~ii-~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHAIL-ASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcceE-EEeCCC-CCHHHHHHhcCCc----cc
Confidence 99988899999999998542 12345666776666655544 445543 3455565555332 23
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++..+|-. |.... +-..++++.. +++++++.++++++.++. .++++.....+- +.|- +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~--t~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~----i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPW--TAPATLARAEALYRAAGQ-SPVRLRREIDGF----VLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCC--CCHHHHHHHHHHHHHcCC-EEEEecCCCccH----HHHH---HHHHHH
Confidence 56667753 22111 1123555432 258899999999999873 455554333332 4442 466899
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCCC-----CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 231 NAMSALCEATGANVSQVAFAVGTDSRI-----GPKFL--NASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~~~~-----~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
+|+..++++.|+|++++.+++...... |+..+ ..++||-...+.||..+..+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 999999999999999999999765322 21111 2335566778899999999998888876
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=174.85 Aligned_cols=197 Identities=13% Similarity=0.158 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---CcEEEEeccC
Q 011641 12 VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE---ADIVFVSVNT 88 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~---aDvVii~Vpt 88 (480)
||.+||.+|+++ ||+|.+|||++++++.+.+.... ..+++.+.+++++++. +|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 0136677888887764 8999999996
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccccccccccc
Q 011641 89 PTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDL 168 (480)
Q Consensus 89 p~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~ 168 (480)
+ ..++++++++.+.+.++++||+.||+.+..+++..+.+++.+ +.++.+|...++..+..+
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~G----i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKG----IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CeEEecCCCCCHHHHhcC-
Confidence 4 356788899999999999999999998888888877777654 356789988876555443
Q ss_pred CCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH-HhC
Q 011641 169 FNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE-ATG 241 (480)
Q Consensus 169 ~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~G 241 (480)
+.+++||+ ++++++++++|+.+..+. ..++++.+++..+|+++|.+.+..+..+.|...+++ ++|
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G 197 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG 197 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 26889996 889999999999987421 267788899999999999999999999999999999 599
Q ss_pred CCHHHHHHHh
Q 011641 242 ANVSQVAFAV 251 (480)
Q Consensus 242 id~~~v~~~~ 251 (480)
+|..++.+++
T Consensus 198 l~~~~l~~v~ 207 (459)
T PRK09287 198 LSAEEIADVF 207 (459)
T ss_pred CCHHHHHHHH
Confidence 9999998888
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=167.40 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=168.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999998 999999999742 245567889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
||+|+|+. .++++++++.++ ++++++|+..|+ +.|.+.+.+.+.+........+.++.+|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 356777888764 677888888776 7777766666655543222233344666543
Q ss_pred cccccccccCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-----------------HHHhhhhHhH
Q 011641 160 AEGTAIQDLFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-----------------AELSKLAANA 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~-~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~-----------------ae~~Kl~~N~ 221 (480)
.+ +.. ..+. .++.|++ .+..+.++++|+..+. ..+...|+.. +...|+..|.
T Consensus 116 ~e---i~~-~~~~~~~~ag~~-----~~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~ 185 (308)
T PRK14619 116 KE---IQQ-GLPAATVVASRD-----LAAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNA 185 (308)
T ss_pred HH---Hhc-CCCeEEEEEeCC-----HHHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccH
Confidence 22 000 0111 2444443 7889999999998641 2333344322 2334588899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-CCC------CCCCccCCCCccccch----------------hHhHH
Q 011641 222 FLAQRISSVNAMSALCEATGANVSQVAFAVGTD-SRI------GPKFLNASVGFGGSCF----------------QKDIL 278 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-~~~------~~~~~~pg~g~gG~cl----------------~kD~~ 278 (480)
..++....++|+..+++++|+|+..+++..+.. ... +.++ .+ ||...-. .||..
T Consensus 186 ~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~-~~--g~~l~~g~~~~~~~~~~~~~~eG~~~~~ 262 (308)
T PRK14619 186 KAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNY-QV--GYGLAQGKSLEQILAELEGTAEGVNTAN 262 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccH-HH--HHHHHCCCCHHHHHHhcCCEeecHHHHH
Confidence 999999999999999999999999998753321 100 1111 22 2211122 68999
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHH--hHHhHHHHHHHHHH
Q 011641 279 NLVYICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVVA 316 (480)
Q Consensus 279 ~l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~~ 316 (480)
.+.+++++.|++ .++.+.+.++ |+--|+.+++.+++
T Consensus 263 ~~~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 263 VLVQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELME 300 (308)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 999999999998 6676665543 44456666666543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=168.52 Aligned_cols=220 Identities=17% Similarity=0.125 Sum_probs=163.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCC-cCC-ChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-YEP-GLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~-~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||+++|..|+++ | +|++|.++++.++.+++.+... +.+ +. . ...++.+++|+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~-----l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDV-V-----LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-c-----cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 6889999999999999865322 222 11 0 12357889999888999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||+. +++++++++.+.++++++|+.. -.++.++.+.+.+.+++..++..+.+..+|.
T Consensus 78 aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 99999999852 4688999999999888755433 3567776666666666543223456678887
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH----------------
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------- 221 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------- 221 (480)
+..+... ..+..+++|+. +++..+.++++|+.-. ...+...|+...||.|.+.|+
T Consensus 143 ~a~ev~~----g~~t~~via~~----~~~~~~~v~~lf~~~~-~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n 213 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMP----DQHLATRLSPLFRTRR-FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGEN 213 (341)
T ss_pred HHHHHHc----CCCeEEEEEeC----CHHHHHHHHHHhCCCC-EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 7654211 12334667776 4678899999998753 234455799999999987665
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 222 -FLAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 222 -~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
..++....++|+.++++.+|.++++++...+.
T Consensus 214 ~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 214 TRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 44667788999999999999999988877664
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=165.16 Aligned_cols=257 Identities=12% Similarity=0.015 Sum_probs=182.2
Q ss_pred cEEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEECCHHHHH-----HHHcCCCCCcCCChHH
Q 011641 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~-----~l~~~~~~~~e~~l~~ 56 (480)
|||.|.|.|+ -|.+||.+|+++ ||+|++||++++..+ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~~~~l~~------------ 66 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEELWKKVED------------ 66 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHHHHHHHH------------
Confidence 8999999994 589999999998 999999999987532 2221
Q ss_pred HHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH-H
Q 011641 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-E 135 (480)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~ 135 (480)
.+++++++..+++++||+||+|+|++. .++++++++.+.++++++|++.||+++.+. +
T Consensus 67 -------~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~ 125 (342)
T PRK12557 67 -------AGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAKNILPHLPENAVICNTCTVSPVVLYY 125 (342)
T ss_pred -------CCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHH
Confidence 246777888888899999999998531 357788899999999999999999988876 6
Q ss_pred HHHHHHHhcCCCCceEEeeCCcc--ccccccccccCCCCeEEEecC---CCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 136 AIEKILTHNSKGIKFQILSNPEF--LAEGTAIQDLFNPDRVLIGGR---ETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 136 ~l~~~l~~~~~g~~~~v~~~Pe~--~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.+.+.+........+. .+.|-. ..++... .++.|+. ....+++.+++++++++.++ ..+++.+.+
T Consensus 126 ~l~~~l~~~~~~~gi~-~~~p~~v~Gae~g~l-------~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g 195 (342)
T PRK12557 126 SLEGELRTKRKDVGIS-SMHPAAVPGTPQHGH-------YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPAD 195 (342)
T ss_pred HHHHHhcccccccCee-ecCCccccccccchh-------eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHH
Confidence 6666664321111111 112321 1222211 2444431 11124788899999999986 356666789
Q ss_pred hHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 211 SAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 211 ~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
.+..+|+++|.+.++.++...|...++++.|.++.++.+-+....-.+..-+.-.-|+.|--=.-||..|+..|++..+.
T Consensus 196 ~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (342)
T PRK12557 196 VVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLL 275 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcc
Confidence 99999999999999999999999999999999999998877654322222221122333333334889999999998876
Q ss_pred hhhHHHHHHHHHh
Q 011641 291 EVAEYWKQVIKIN 303 (480)
Q Consensus 291 ~~~~~~~~~~~~N 303 (480)
+..+.+..++++=
T Consensus 276 ~~~~~~~~~~~~~ 288 (342)
T PRK12557 276 EKQKDLDAALEIL 288 (342)
T ss_pred hhhhhHHHHHHHH
Confidence 6566676666543
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=165.41 Aligned_cols=261 Identities=18% Similarity=0.194 Sum_probs=165.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcC-CChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYE-PGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e-~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++. .+.+++....+.. .+.+.. ...++++++++.+ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARI-GDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHH-HHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 68999999999999999999998 999999999754 5777764433322 111110 0113456677764 57899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+.++....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 256778888888888877654 4566666667666643210 000011111333
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH-------------
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR------------- 226 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (480)
.||....... .++.+|.. +..+.++++|+..+. ...+..|+..+.|.|++.|++..+.
T Consensus 138 ~pg~~~~~~~--g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQGTS--GALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEecCC--CceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 4554432211 23555532 346788899987652 3556679999999999999754444
Q ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHhcCCC--------C----CCCCCccCCCCccccchhHhHH---------
Q 011641 227 -------ISSVNAMSALCEATGANVSQVAFAVGTDS--------R----IGPKFLNASVGFGGSCFQKDIL--------- 278 (480)
Q Consensus 227 -------ia~~nE~~~l~~~~Gid~~~v~~~~~~~~--------~----~~~~~~~pg~g~gG~cl~kD~~--------- 278 (480)
...+.|...++++.|+++..+.++..... . ....+...... ....+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 37899999999999998654332221110 0 00001110111 1356899999
Q ss_pred ---HHHHHHHHCCCChhhHHHH
Q 011641 279 ---NLVYICECNGLPEVAEYWK 297 (480)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~ 297 (480)
++++.|+++|++ .++.+
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~ 307 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNA 307 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHH
Confidence 799999999998 44444
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-17 Score=164.04 Aligned_cols=217 Identities=16% Similarity=0.193 Sum_probs=163.7
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC--------CeEEEEEC-----CHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS--------IEVAVVDI-----SVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G--------~~V~~~D~-----~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
||+|||+|.||+++|..|+++ | |+|.+|.+ +++..+.+++.+ ++.+.|++. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 777888888754 344445532 1246889
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcc--hHHHHHHHHHhcC
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVK--TAEAIEKILTHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~g--t~~~l~~~l~~~~ 145 (480)
++|+++++++||+||++||+ ..++++++++.++++++++++..+. +.+. +...+.+++++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 3578889999999988887776654 4544 6666777776644
Q ss_pred CCCceEEeeCCccccccccccccCCCCeEEEecCCCcch----HHHHHHHHHHHhccCCCCeE-EeCCchhHHHh-----
Q 011641 146 KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG----QKAVKALKDVYAHWVPEDRI-LTTNLWSAELS----- 215 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~----~~~~e~~~~l~~~~~~~~~v-~~~~~~~ae~~----- 215 (480)
+..+.++++|.+..+-.. ..|..+++++. + .+..+.++++|++-. .++ ...|+...|+.
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~----~~~~~~~~a~~~~~lf~~~~--frv~~s~Dv~GvEl~galKN 206 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYR----DPADFDVDARVLKALFHRPY--FRVNVVDDVAGVEIAGALKN 206 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeC----CCcchHHHHHHHHHHhCCCC--EEEEEcCCcccchhhHHHHH
Confidence 346778899988765321 34566778876 4 678899999998632 334 34576665554
Q ss_pred ------------hhhHhHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC
Q 011641 216 ------------KLAANAFLAQRISSVNAMSALCEATGANVS--QVAFAVGT 253 (480)
Q Consensus 216 ------------Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~--~v~~~~~~ 253 (480)
++-.|+..++....++||.++++.+|.+++ +++...+.
T Consensus 207 v~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 207 VVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 355778888999999999999999998766 66655553
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=164.83 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=164.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-------CeEEEEECCHH-----HHHHHHcC-CCCCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++. .++.+.|++. ...++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999987 48888864 3555667663 2357899
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh--hCCCCcEEEEecC-CCcchH--HHHHHHHHh
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD--VSKSDKIVVEKST-VPVKTA--EAIEKILTH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~--~l~~~~iVi~~ST-v~~gt~--~~l~~~l~~ 143 (480)
++|++++++++|+|+++||+ ..++++++++.+ .++++.+||..+. +.+.+. ..+.+++++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 246888999988 7777766665543 444432 445666655
Q ss_pred cCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeE-EeCCchhHHHh-------
Q 011641 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELS------- 215 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v-~~~~~~~ae~~------- 215 (480)
.. +..+.++++|.+..+-.. ..|..+++++. +.+..+.++++|++-. .++ ...|+...|+.
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~----~~~~a~~~~~lf~~~~--frvy~s~Dv~GvEl~galKNvi 217 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCE----DKDDALIWQRLFDRPY--FKINCVPDVIGVEVCGALKNII 217 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCc--EEEEEcCCcccchhhHHHHHHH
Confidence 43 235678899988765321 34667888887 5788899999998632 334 34576655544
Q ss_pred ----------hhhHhHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHhcCC
Q 011641 216 ----------KLAANAFLAQRISSVNAMSALCEATGA--NVSQVAFAVGTD 254 (480)
Q Consensus 216 ----------Kl~~N~~~~~~ia~~nE~~~l~~~~Gi--d~~~v~~~~~~~ 254 (480)
++-.|+..++....++||.++++.+|. ++++++...+..
T Consensus 218 AIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~G 268 (365)
T PTZ00345 218 ALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLA 268 (365)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHh
Confidence 456788889999999999999999974 888888766643
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=154.21 Aligned_cols=215 Identities=16% Similarity=0.217 Sum_probs=144.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCC-CCcCCChHHHHhhhcCCCEEEecCHHHhh-ccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++.+++.+. ..+.++.. ...++++++++.+++ .++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999998 9999999999999999987432 21122210 113567888888766 589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
|+||+|||+. .+.++++++.+ .+.+++.|+ ....+...+.....+.+.+..+...+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999852 46788999988 887776554 333443332212222333322112234455776
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH----------------
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------- 221 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------- 221 (480)
+..+... ..+..+++++. +.+..+.+.++|+.-. .......|+...+|.|++.|+
T Consensus 138 ~a~~~~~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~-~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQ----NETLGSSLISKLSNEN-LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred HHHHHHc----CCCcEEEEecC----CHHHHHHHHHHHCCCC-eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 5432211 13445666665 3556677888887643 123445699999999998776
Q ss_pred -HHHHHHHHHHHHHHHHHHhCC--CHHHHH
Q 011641 222 -FLAQRISSVNAMSALCEATGA--NVSQVA 248 (480)
Q Consensus 222 -~~~~~ia~~nE~~~l~~~~Gi--d~~~v~ 248 (480)
..++....++|+..+++++|. +.++++
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 238 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLI 238 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhh
Confidence 344556789999999999987 777775
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=158.98 Aligned_cols=214 Identities=19% Similarity=0.264 Sum_probs=146.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChH-----HHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLD-----GVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~-----~~~~~~~~~~l~~t~d~~~a 75 (480)
+.||+|||+|.||.++|..|+++ |++|++||++++.++.+++...++.+++.+ +.-.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57899999999999999999998 999999999999998876532111111100 00000012457888999888
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCCCCceEEee
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~ 154 (480)
+++||+||+|+|++. .....++.++.+.+++++++ +++||+++..... .++....-...+..
T Consensus 79 ~~~aD~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~- 141 (288)
T PRK09260 79 VADADLVIEAVPEKL-------------ELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFF- 141 (288)
T ss_pred hcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecC-
Confidence 999999999999642 12246677888889999876 7889998865333 33221110011222
Q ss_pred CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
+|....+ + ..|+++..+ +++++++++++++.++. .++++. +...++.| .+..+++||.+
T Consensus 142 ~Pv~~~~------L----ve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~-----d~~Gf~~n---Rl~~~~~~ea~ 200 (288)
T PRK09260 142 NPVHKMK------L----VELIRGLET--SDETVQVAKEVAEQMGK-ETVVVN-----EFPGFVTS---RISALVGNEAF 200 (288)
T ss_pred CCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEec-----CcccHHHH---HHHHHHHHHHH
Confidence 5654332 1 235666432 58899999999999873 455553 44456666 56678999999
Q ss_pred HHHHHhCCCHHHHHHHhcCC
Q 011641 235 ALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+.++...+++++..++...
T Consensus 201 ~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 201 YMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHcCCCCHHHHHHHHHhC
Confidence 99988668899998888544
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=164.52 Aligned_cols=207 Identities=19% Similarity=0.200 Sum_probs=142.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-------CCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-------QLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-------~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+|||+|||+|.||.++|..|+++ |++|++||+++++++.+.+. ...+....+ ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPL------PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchh------hhhhceEeeCCHH
Confidence 47999999999999999999998 99999999999988765421 000000000 0124578899998
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEe
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
+++++||+||+|+|+.. +++ ..+++++.+.+++++ |+.+||..+..+ .+.+.+.... ..+.
T Consensus 76 ea~~~aD~Vieavpe~~-----------~vk--~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~----r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DLK--RRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPE----RLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HHH--HHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcc----eEEE
Confidence 88999999999998642 222 456677888888776 456777765543 4444443322 2344
Q ss_pred eCC---ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHH-HHHHH
Q 011641 154 SNP---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLA-QRISS 229 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~-~~ia~ 229 (480)
.+| ....+ -..++++..+ ++++.++++++|+.++. .+++.. |.+.|.... +..++
T Consensus 137 ~hP~nP~~~~~----------Lvevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 137 AHPYNPVYLLP----------LVELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLLEAL 195 (495)
T ss_pred EecCCCcccCc----------eEEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHHHHH
Confidence 555 33222 1235666532 68899999999999874 344443 455554443 44556
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011641 230 VNAMSALCEATGANVSQVAFAVGTDS 255 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
++|+..++++.|+|++++.++++..+
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~ 221 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSF 221 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhcc
Confidence 79999999999999999999998775
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=137.16 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=154.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh---hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
|+|+.||||.||..+..+|.+. ||+|++||+|++.++.+.... .+.++++++- +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 8999999999999999999998 999999999999999988632 2222333332 345
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
.-+|.++||... .+.++++++++.|.++.+||+-....-..+.+-.+.+++.+ ++++.+-..
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg----i~flD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG----IHFLDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC----CeEEeccCC
Confidence 678999999531 24788999999999999999754322222222233455443 334444333
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
.+.--+..+ -.+||||+ +++.+++.++|+.+.++ .-.+.+..+++..+|+++|-.-.-.++...|-..+
T Consensus 122 GG~~G~~~G----~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGVWGAERG----YCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCchhhhcC----ceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 332222222 24789996 78999999999998652 23456788999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCC
Q 011641 237 CEAT--GANVSQVAFAVGTDSRIGP 259 (480)
Q Consensus 237 ~~~~--Gid~~~v~~~~~~~~~~~~ 259 (480)
.++. ..|..+|.+..+..+-|++
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIrS 217 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIRS 217 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHHH
Confidence 8874 6889999999998875543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-16 Score=153.62 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=144.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHh-----hhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-----QCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~-----~~~~~~l~~t~d~~~a 75 (480)
+.||+|||+|.||..+|.+|+.+ |++|++||++++..+.+.+... ..++.+.+ ....++++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHH
Confidence 36899999999999999999998 9999999999987765432100 00000100 0012467889999988
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--CCceEEe
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQIL 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+++||+|+.|+|.. .+++ ..+++++.+.+++++ |+.+||.+. ....+.+.+..... +.+|
T Consensus 81 v~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~Hf--- 142 (321)
T PRK07066 81 VADADFIQESAPER-----------EALK--LELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHP--- 142 (321)
T ss_pred hcCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEec---
Confidence 99999999999863 3444 567789999999888 445566532 22334443332111 1111
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHH
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
|+|.+..|- -.|| .+.. +++++.+.+.++++.+++ .++.+. -+.-.++.| .+..++++|.
T Consensus 143 fnP~~~~pL---------VEVv-~g~~--T~~e~~~~~~~f~~~lGk-~pV~v~----kd~pGFi~N---Rl~~a~~~EA 202 (321)
T PRK07066 143 FNPVYLLPL---------VEVL-GGER--TAPEAVDAAMGIYRALGM-RPLHVR----KEVPGFIAD---RLLEALWREA 202 (321)
T ss_pred CCccccCce---------EEEe-CCCC--CCHHHHHHHHHHHHHcCC-EeEecC----CCCccHHHH---HHHHHHHHHH
Confidence 455544431 1254 3433 379999999999999873 455542 134457777 6779999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCC
Q 011641 234 SALCEATGANVSQVAFAVGTDS 255 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
..+.++..++++++..++...+
T Consensus 203 ~~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCC
Confidence 9999998899999999987664
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-15 Score=147.87 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=129.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-EEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.++|..|+++ |++|++||++++..+.+.+.. .+ ..+++. +++++||
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g------------------~~~~~~~~~-~~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG------------------LVDEASTDL-SLLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC------------------CcccccCCH-hHhcCCC
Confidence 7999999999999999999998 999999999999888766421 11 233444 3578999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc--
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF-- 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-- 158 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.+...+.+.+... . ++..+|-.
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999999842 34567788988888899998888877655444432211 1 34445543
Q ss_pred --ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHH
Q 011641 159 --LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 159 --~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.....+..+++....+++ +.....+++..+.++++++.++. ..+..+..+..+.++++.|....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l-~p~~~~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVL-TPTENTDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEE-ccCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333334444443333333 22233367889999999999863 33445566788999999998776666665554
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=143.53 Aligned_cols=201 Identities=14% Similarity=0.136 Sum_probs=130.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|.++ |+ +|++||+++++.+.+.+.. ....+++++++ .+|
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~g------------------~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALELG------------------LVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHCC------------------CCcccCCHHHH-hcC
Confidence 6999999999999999999988 64 7999999999887765421 11123455664 459
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc-
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|||.. .+.++++++.+ ++++++|++.+++.....+ .+.+... .. ++..+|..
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~----~~~~~~~-~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAKIIE----SVPKHIR-KN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHHHHH----HHHHhcC-CC-EEecCCcCc
Confidence 9999999853 34667788888 8889988876665433333 3332211 12 45566743
Q ss_pred ---ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
.+|..+..+++....+++.. .+..+++..+.++++|+.++. .++..+..+..+.++++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~~-~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLCD-VEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEec-CCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 34555544444333333322 122356788999999999863 344555567789999999987755555554331
Q ss_pred HHHHhCCCHHHHHHHhc
Q 011641 236 LCEATGANVSQVAFAVG 252 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~ 252 (480)
.+.|..++....+
T Consensus 195 ----~~~~~~~~~~~~~ 207 (275)
T PRK08507 195 ----KEEDERNIFDLAG 207 (275)
T ss_pred ----hcCChHHHHhhcc
Confidence 2555555555444
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-15 Score=146.42 Aligned_cols=212 Identities=19% Similarity=0.197 Sum_probs=143.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|+++++ +++++.+++....+.+++.+.. -....+++.+++.+.+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999998 999999999 8889988875444332221110 012345666665689999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc-cc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF-LA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (480)
||+|+|++. ++++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~~---------------~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAYQ---------------LDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEecccC---------------HHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 999999642 467888898888888776543 334555566665554321 01123333333 35
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF------------------ 222 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~------------------ 222 (480)
+|..... .+.++.+|..+.. ..+..+.+.++|...+. ......|+..+.|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 5554433 3456778865322 23455667777776542 234567999999999998863
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCH
Q 011641 223 ---LAQRISSVNAMSALCEATGANV 244 (480)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456678999999999999864
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-13 Score=147.41 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=103.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++.... ...+ -++..+++.++.+ .++|
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~-~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHSL-AARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHH-HHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7999999999999999999998 89999999985542 2221 1234566777744 5799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||. ..+.++++++. +.++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999883 23567777776 56888999998876664444444444432 222 566777664
Q ss_pred cccccccccCCCCeEEEe---cCCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 160 AEGTAIQDLFNPDRVLIG---GRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG---~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.+. ...++.....++.+ +. +....+..+.+.++|+.++ .++..++++
T Consensus 172 ~e~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~lG--a~v~~ms~e 221 (667)
T PLN02712 172 PQS-AKHGWDGLRFVYEKVRIGN-EELRVSRCKSFLEVFEREG--CKMVEMSCT 221 (667)
T ss_pred Ccc-ccchhccCcEEEeeccCCC-ccccHHHHHHHHHHHHHcC--CEEEEeCHH
Confidence 331 11111111222221 11 1112345667779999885 466666654
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=156.79 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=141.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH------------cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN------------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||..||.+|+.+ |++|++||++++.++... +|.. .+...+.. ..+++.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~--~~~~~~~~-----~~~i~~~ 78 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKL--TAEQADAA-----LARLRPV 78 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHH-----HhCeEEe
Confidence 5799999999999999999998 999999999999888732 1211 11111111 1468899
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+++++ +.+||+||.|||... +++ ..++.++...+++++++ +++||+++.. +...+.....
T Consensus 79 ~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~ 141 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVA 141 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEE
Confidence 99876 789999999998642 333 44567788888889988 5889998853 3333322111
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQ 225 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| ++|....+ + ..|+++..+ ++++++.+.++++.+++ .++++.+ ++ ++.|-+
T Consensus 142 G~hf---f~Pa~v~~------L----vEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG------fi~Nrl--- 196 (507)
T PRK08268 142 GLHF---FNPVPLMK------L----VEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG------FIVNRA--- 196 (507)
T ss_pred EEee---cCCcccCe------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC------hHHHHH---
Confidence 2222 34433221 1 234565432 68999999999999874 5666654 33 566643
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 226 RISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..++++|...++++.++|++++.+++...
T Consensus 197 l~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 197 ARPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 35699999999999999999999999654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=141.93 Aligned_cols=214 Identities=15% Similarity=0.117 Sum_probs=140.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC---CCCcCCC--h--HHHHhhhcCCCEEEecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ---LPIYEPG--L--DGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~~e~~--l--~~~~~~~~~~~l~~t~d~~ 73 (480)
++||+|||+|.||.++|..|+.+ |++|++||++++.++.+++.. .+...+. + ++... ....++++++|++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE-AALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH-HHHcCeEEeCCHH
Confidence 37999999999999999999998 999999999998877765421 0000000 0 00000 0124688999999
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCCCCceEE
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQI 152 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+++++||+||+|+|+.. .....+++++.+.++++++| .+.||.++.. +.+.+.... . ++
T Consensus 80 ~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~~---r-~v 139 (287)
T PRK08293 80 EAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRPE---K-FL 139 (287)
T ss_pred HHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCcc---c-EE
Confidence 88999999999998642 33467788899999988887 4556665532 222222111 1 23
Q ss_pred eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..+| ..|... .+--.++.+. .+++++.+.+.++++.++. .++.+. .+.-.++.| .+..+++||
T Consensus 140 g~Hf--~~p~~~-----~~lvevv~~~--~t~~~~~~~~~~~~~~~Gk-~pv~v~----~d~pgfi~n---Ri~~~~~~e 202 (287)
T PRK08293 140 ALHF--ANEIWK-----NNTAEIMGHP--GTDPEVFDTVVAFAKAIGM-VPIVLK----KEQPGYILN---SLLVPFLSA 202 (287)
T ss_pred EEcC--CCCCCc-----CCeEEEeCCC--CCCHHHHHHHHHHHHHcCC-eEEEec----CCCCCHhHH---HHHHHHHHH
Confidence 3333 111110 0111223332 2378999999999999863 445442 123345566 567889999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC
Q 011641 233 MSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 233 ~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
...+.++..++++++..++...
T Consensus 203 a~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 203 ALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999889999999888644
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=138.22 Aligned_cols=150 Identities=25% Similarity=0.344 Sum_probs=108.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||+|.||+++|..|+++ |++|++|.++++.++.+++.+ ++.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 899999999999999999999 999999999999999999743 334444421 12468899999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-CcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||+. .+++.++++.++++++++++..+.. ..++...+.+++++..+...+.++.+|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999863 3578999999999999988876543 4556555666666644323388899998876
Q ss_pred ccccccccCCCCeEEEecC
Q 011641 161 EGTAIQDLFNPDRVLIGGR 179 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~ 179 (480)
+-.. ..|..+++++.
T Consensus 138 Ei~~----~~pt~~~~as~ 152 (157)
T PF01210_consen 138 EIAE----GKPTAVVIASK 152 (157)
T ss_dssp HHHT----T--EEEEEEES
T ss_pred HHHc----CCCeEEEEEec
Confidence 5321 34556778876
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=152.20 Aligned_cols=204 Identities=18% Similarity=0.239 Sum_probs=139.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc------------CCCCCcCCChHHHHhhhcCCCEEE
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------~~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
+.||+|||+|.||..||.+|+++ ||+|++||++++.++...+ |... +...+.. ..+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~--~~~~~~~-----~~~i~~ 75 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLT--AEECERT-----LKRLIP 75 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHH-----HhccEE
Confidence 46899999999999999999998 9999999999998875421 1110 0011111 146888
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC-
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~- 146 (480)
++++++ +.+||+||.|||... +++ +.++.++.+.+++++++. ++||+++. .+...+.....
T Consensus 76 ~~~~~~-l~~aDlVIEav~E~~-----------~vK--~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~ 138 (503)
T TIGR02279 76 VTDLHA-LADAGLVIEAIVENL-----------EVK--KALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERV 138 (503)
T ss_pred eCCHHH-hCCCCEEEEcCcCcH-----------HHH--HHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccce
Confidence 999976 789999999998642 222 456778888888888764 55666653 23333332211
Q ss_pred -CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHH
Q 011641 147 -GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQ 225 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| ++|-...+ + ..|+++..+ ++++++.+.++++.+++ .++++.+... ++.|- +
T Consensus 139 ~G~HF---f~Papv~~------L----vEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nr---l 194 (503)
T TIGR02279 139 AGLHF---FNPAPVMA------L----VEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPG-----FIVNR---V 194 (503)
T ss_pred EEEec---cCccccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCC-----cHHHH---H
Confidence 3232 34433221 1 135666433 68999999999999874 5666654222 35663 3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 226 RISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
..++++|...+.++.+++++++.+++...
T Consensus 195 ~~~~~~EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 195 ARPYYAEALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 35799999999999999999999999754
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-14 Score=140.90 Aligned_cols=210 Identities=16% Similarity=0.172 Sum_probs=135.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC---CCC-cCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ---LPI-YEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++.. ... .+.+... . ..+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIAS---A-GMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHH---H-HhhceEEeCCHHHHh
Confidence 47899999999999999999998 999999999999988876520 000 0001000 0 013577888888888
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++||+||+|||... .....++..+.+.++++++|+ ++|.... ...+.+.+.... . ++..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998542 123566777888777776654 4444333 334544443211 1 222232
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC-C-chhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-N-LWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~-~-~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
. .|..... + ..++.+.. ++++..+.+.++++.++. .++... + ++. +++|. ..++++|..
T Consensus 139 ~--~p~~~~~-l----~~i~~g~~--t~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~-----i~nr~----~~~~~~Ea~ 199 (311)
T PRK06130 139 F--TPADVIP-L----VEVVRGDK--TSPQTVATTMALLRSIGK-RPVLVKKDIPGF-----IANRI----QHALAREAI 199 (311)
T ss_pred C--CCCccCc-e----EEEeCCCC--CCHHHHHHHHHHHHHcCC-EEEEEcCCCCCc-----HHHHH----HHHHHHHHH
Confidence 1 1111110 1 12334332 258899999999999863 344443 2 222 45554 457899999
Q ss_pred HHHHHhCCCHHHHHHHhcCC
Q 011641 235 ALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~~~ 254 (480)
.++++.|+|++++.+++...
T Consensus 200 ~l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 200 SLLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHcCCCCHHHHHHHHHhc
Confidence 99999999999999999754
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-14 Score=140.24 Aligned_cols=207 Identities=17% Similarity=0.180 Sum_probs=134.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+|.||.++|..|+.+ |++|++||++++.++.+.+. ...+.+...+.. ..+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAA-----LARISTATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhCeEeeCC
Confidence 6899999999999999999998 99999999999988764321 001111011111 135788888
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCce
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIKF 150 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
+++ +++||+||+|||+.. .....+++++.+.++++++++ ++||+++. .+.+.+.....-...
T Consensus 78 ~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~ 140 (292)
T PRK07530 78 LED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGI 140 (292)
T ss_pred HHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEe
Confidence 864 899999999998642 123566788999999998876 56666643 344443221110011
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+. +.|....++. .++.|.. +++++++.+.++++.+++ .+++..+.. .+++++ +..+++
T Consensus 141 h~-~~p~~~~~~v---------ei~~g~~---t~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nR----l~~~~~ 198 (292)
T PRK07530 141 HF-MNPVPVMKLV---------ELIRGIA---TDEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNR----ILLPMI 198 (292)
T ss_pred ec-cCCcccCceE---------EEeCCCC---CCHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHH----HHHHHH
Confidence 11 2333333221 2443322 268899999999999874 455554432 444444 456778
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 231 NAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
||...+.++.-.++.++..++...
T Consensus 199 ~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 199 NEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999988666899998888533
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-13 Score=140.55 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=140.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||.++|..|.++ |++|++||+++++.+.+... .++.++++..+++.+||
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998876554431 12355677777889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.....+.+.+.+.. +.. ++..+|.+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999999842 346778899999999999999888776666666655432 222 355667653
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|... . +....+++. .....+++..+.++++|+.++ ..+..++++ +.-|++.++....++.+...+.. ++++
T Consensus 121 p~~~--~-~~g~~~il~-p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~~~ 191 (437)
T PRK08655 121 PRTP--S-LKGQVVILT-PTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LKRL 191 (437)
T ss_pred CCCc--c-cCCCEEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 3221 1 222233332 222235778899999999875 456666644 67788888777777776665444 4677
Q ss_pred CCCHHHHHHHhc
Q 011641 241 GANVSQVAFAVG 252 (480)
Q Consensus 241 Gid~~~v~~~~~ 252 (480)
|.|..+....++
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888776654443
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=138.26 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=133.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc----CCC---------CCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS----DQL---------PIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~----~~~---------~~~e~~l~~~~~~~~~~~l~~ 68 (480)
.||+|||+|.||.++|..|+++ |++|++||++++.++...+ +.. .+.+...+++ ..++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~ 76 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAI-----MARIRT 76 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHH-----HhCcEe
Confidence 5899999999999999999998 9999999999998875332 100 0001011111 135677
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+++. +++++||+||+|+|++. .....+++++.+.++++++++ ++|.. -+...+...+.....
T Consensus 77 ~~~~-~~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S~tsg-~~~~~la~~~~~~~r~i 140 (291)
T PRK06035 77 STSY-ESLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-SNTSG-IMIAEIATALERKDRFI 140 (291)
T ss_pred eCCH-HHhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-EcCCC-CCHHHHHhhcCCcccEE
Confidence 8887 46899999999998642 123567788888888888765 22322 233445444432211
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
+.+| +.|....++. .++-|.. +++++.+.+.++++.+++ .++.+.+....-..|+.
T Consensus 141 g~hf---~~P~~~~~~v---------Ev~~g~~---T~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~-------- 196 (291)
T PRK06035 141 GMHW---FNPAPVMKLI---------EVVRAAL---TSEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFI-------- 196 (291)
T ss_pred EEec---CCCcccCccE---------EEeCCCC---CCHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHH--------
Confidence 1111 2343333321 2333322 368999999999999874 56666655554444444
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
..++||+..+.++.-++++++..++..
T Consensus 197 ~~~~~ea~~~~~~g~a~~~~iD~~~~~ 223 (291)
T PRK06035 197 EGWLLEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhh
Confidence 457789999998866789999998854
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=135.72 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=135.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH-----------cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN-----------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~-----------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|+||+|||+|+||.++|..|+.+ |++|++||+++++++... +.. .+.....+.. ..+++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~~-----~~~l~~~ 74 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKG-KMTEADKEAA-----LARITGT 74 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH-----HhCeEEe
Confidence 46899999999999999999998 999999999999885321 110 0000001111 1368888
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCc
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+|+++ +++||+||+|+|... ..-.++++.+.+.++++++|+ ++|.....+ .+.+.+.....
T Consensus 75 ~~~~~-~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il~-s~ts~~~~~-~la~~~~~~~r--- 135 (282)
T PRK05808 75 TDLDD-LKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAILA-TNTSSLSIT-ELAAATKRPDK--- 135 (282)
T ss_pred CCHHH-hccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEEE-ECCCCCCHH-HHHHhhCCCcc---
Confidence 89865 899999999998421 222578889999999998773 334333332 45554432211
Q ss_pred eEEe---eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 150 FQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 150 ~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
++. +.|....++. .++-|.. ++++..+.+.++++.++. .++.+. +.-.++.| .+.
T Consensus 136 -~ig~h~~~P~~~~~~v---------ev~~g~~---t~~e~~~~~~~l~~~lGk-~pv~~~-----d~~g~i~~---Ri~ 193 (282)
T PRK05808 136 -VIGMHFFNPVPVMKLV---------EIIRGLA---TSDATHEAVEALAKKIGK-TPVEVK-----NAPGFVVN---RIL 193 (282)
T ss_pred -eEEeeccCCcccCccE---------EEeCCCC---CCHHHHHHHHHHHHHcCC-eeEEec-----CccChHHH---HHH
Confidence 122 2333333221 1333322 368999999999999874 455543 33345666 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+++||...+.++.-.+++++..++...
T Consensus 194 ~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 194 IPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 8999999999988778899999888543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-14 Score=137.64 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=136.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH------------cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN------------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||..+|..|+.+ |++|++||++++.++... +|.. .+...+.. ..+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~~-----~~~l~~~ 76 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKL--TERERDAA-----LARLRFT 76 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccC--ChhhHHHH-----HhCeEee
Confidence 5899999999999999999998 999999999999887622 1211 11111111 2478899
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhC-CCCcEEEEecCC-CcchHHHHHHHHHhcCC-
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS-KSDKIVVEKSTV-PVKTAEAIEKILTHNSK- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv-~~gt~~~l~~~l~~~~~- 146 (480)
+|++ ++++||+||.|+|.. .+++ ..++..+.+.+ +++++++..||. ++.. +...+.....
T Consensus 77 ~~~~-~~~~~d~ViEav~E~-----------~~~K--~~l~~~l~~~~~~~~~il~snTS~~~~~~---la~~~~~~~r~ 139 (286)
T PRK07819 77 TDLG-DFADRQLVIEAVVED-----------EAVK--TEIFAELDKVVTDPDAVLASNTSSIPIMK---LAAATKRPGRV 139 (286)
T ss_pred CCHH-HhCCCCEEEEecccC-----------HHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCccE
Confidence 9995 489999999999853 2333 55677888888 788888765544 4332 2222222111
Q ss_pred -CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHh-ccCCCCeEEeCCchhHHHhhhhHhHHHH
Q 011641 147 -GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA-HWVPEDRILTTNLWSAELSKLAANAFLA 224 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~-~~~~~~~v~~~~~~~ae~~Kl~~N~~~~ 224 (480)
|.+| ++|....+.. .++.|..+ ++++++.+.+++. .+++ .++.+. +...++.| .
T Consensus 140 ~g~hf---~~P~~~~~lv---------Elv~~~~T---~~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfi~n---R 195 (286)
T PRK07819 140 LGLHF---FNPVPVLPLV---------ELVPTLVT---SEATVARAEEFASDVLGK-QVVRAQ-----DRSGFVVN---A 195 (286)
T ss_pred EEEec---CCCcccCceE---------EEeCCCCC---CHHHHHHHHHHHHHhCCC-CceEec-----CCCChHHH---H
Confidence 2222 3444433321 35555443 6899999999988 4663 455543 33455666 6
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 225 QRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 225 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+..+++||...+.++...+++++..++...
T Consensus 196 i~~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 196 LLVPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 778999999999988778899999888544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-13 Score=133.71 Aligned_cols=208 Identities=13% Similarity=0.167 Sum_probs=133.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++||+|||+|.||.++|..|+.+ |++|++||+++++++...+. .-.+.+...+.. .+++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADAT-----LGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhceEeeC
Confidence 36799999999999999999998 99999999999887643210 000000000011 13567777
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCc
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.+ ++++||+||+|||... + ....+++++.+.++++++|+ +.||+++.. +++.+.....-..
T Consensus 77 ~~~-~~~~aD~Vieav~e~~-----------~--~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g 139 (295)
T PLN02545 77 NLE-ELRDADFIIEAIVESE-----------D--LKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIG 139 (295)
T ss_pred CHH-HhCCCCEEEEcCccCH-----------H--HHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEE
Confidence 875 5899999999998632 2 23566778888889888875 677776554 3333332111001
Q ss_pred eEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHH
Q 011641 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
.+. ++|-...+. ..++++. .++++..+.++++++.++. .++.+.+.. .++.| .+..++
T Consensus 140 ~h~-~~pp~~~~l----------veiv~g~--~t~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~n---ri~~~~ 197 (295)
T PLN02545 140 MHF-MNPPPIMKL----------VEIIRGA--DTSDEVFDATKALAERFGK-TVVCSQDYP-----GFIVN---RILMPM 197 (295)
T ss_pred Eec-cCCcccCce----------EEEeCCC--CCCHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHH---HHHHHH
Confidence 111 223222111 1234432 2268899999999999874 344444321 23455 566778
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 230 VNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+||...+.++...+++++..++...
T Consensus 198 ~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 198 INEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999999889999998887543
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-13 Score=133.05 Aligned_cols=209 Identities=21% Similarity=0.257 Sum_probs=138.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||+.+|..|+++ |++|+++++++++++.+++....+ +.+ + . ...+..+++.++ ++.+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~-~--~----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG-E--I----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC-c--e----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888654433 100 0 0 011234556665 489999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC-cccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-EFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (480)
||+|+|+.. +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+... -..+.+.+ .+..
T Consensus 70 vila~k~~~---------------~~~~~~~l~~~l~~~~~iv~~-~nG~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAYQ---------------LPAALPSLAPLLGPDTPVLFL-QNGVGHLEELAAYIGPERV--LGGVVTHAAELEG 131 (304)
T ss_pred EEEeccccc---------------HHHHHHHHhhhcCCCCEEEEe-cCCCCcHHHHHHhcCcccE--EEEEEEEeeEecC
Confidence 999998531 467888999988887766543 3345655666655533210 01122222 2344
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
|+...+.. ..++.+|..+.. .+..+.+.++|...+. ......|+..+.|.|++.|+
T Consensus 132 p~~v~~~~--~g~~~ig~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHTG--GGRLKIGEPDGE--SAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEcC--CCCEEEeCCCCC--cHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 55543322 245677865321 2346677888887542 22345689999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCH
Q 011641 222 --FLAQRISSVNAMSALCEATGANV 244 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34455677999999999998764
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=133.76 Aligned_cols=224 Identities=13% Similarity=0.150 Sum_probs=146.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+++|+||| +|.||.++|..|.++ |++|++||++.. +++++++++|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 47899999 999999999999998 999999998521 1234567899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|.. ...++++++.+ ++++++|++.|++.+...+.+.+.+. + .++..+|-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~--~fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G--PVLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C--CEEeeCCCCC
Confidence 9999998843 23566788888 88999999988876655555443221 1 2566788665
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
.+-. .+ ....+++...+ ++++.+.+.++++.++ ..+..++ .+..+.+++++-. .++..+.++..+++
T Consensus 202 ~~~~---~~-~~~~vv~~~~~---~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVG---SL-AKQVVVVCDGR---QPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCc---cc-CCCEEEEcCCC---CchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4322 22 22234443221 4678889999999986 3555544 4567888988843 55555556666666
Q ss_pred HhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhH-HHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDI-LNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~-~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
.+.|..++.+..+ +|| +|. ....+.|.+ + +.+|......|.+.. ...+.+.+.
T Consensus 270 -~~~~~~~~~~~~~-------------~~f------r~~la~~tRia~~---~--p~lw~dI~~~N~~~~-~~l~~~~~~ 323 (374)
T PRK11199 270 -ENVDLEQLLALSS-------------PIY------RLELAMVGRLFAQ---D--PQLYADIIMSSPENL-ALIKRYYQR 323 (374)
T ss_pred -cCCCHHHHHHhcC-------------hHH------HHHHHHHHHHHcC---C--HHHHHHHHHhChhHH-HHHHHHHHH
Confidence 7788777654211 111 332 223444433 3 578998888887766 555555554
Q ss_pred h
Q 011641 318 M 318 (480)
Q Consensus 318 l 318 (480)
+
T Consensus 324 l 324 (374)
T PRK11199 324 F 324 (374)
T ss_pred H
Confidence 4
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-13 Score=131.17 Aligned_cols=206 Identities=20% Similarity=0.274 Sum_probs=143.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++||+|||+|.||..+|..+|.. |++|+++|++++.++...+. ...+.+...+..+ ++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l-----~~i~~~~ 75 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAAL-----ARITPTT 75 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH-----hhccccC
Confidence 47999999999999999999996 89999999998776654321 0111111112222 4678888
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++. ++++||+||.+|+.. .|++ +.+++++..++++++|+ .+.|++++... ...+..... |
T Consensus 76 ~~~-~l~~~DlVIEAv~E~-----------levK--~~vf~~l~~~~~~~aIlASNTSsl~it~i---a~~~~rper~iG 138 (307)
T COG1250 76 DLA-ALKDADLVIEAVVED-----------LELK--KQVFAELEALAKPDAILASNTSSLSITEL---AEALKRPERFIG 138 (307)
T ss_pred chh-HhccCCEEEEecccc-----------HHHH--HHHHHHHHhhcCCCcEEeeccCCCCHHHH---HHHhCCchhEEE
Confidence 887 599999999999853 3444 78899999999999988 55567765432 222221111 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..||-|-. +++++.+++.++...+++ .++...| .-.++.| .+..
T Consensus 139 ~HF---fNP~~~m~L---------VEvI~g~~---T~~e~~~~~~~~~~~igK-~~vv~~D-----~pGFi~N---Ril~ 194 (307)
T COG1250 139 LHF---FNPVPLMPL---------VEVIRGEK---TSDETVERVVEFAKKIGK-TPVVVKD-----VPGFIVN---RLLA 194 (307)
T ss_pred Eec---cCCCCccee---------EEEecCCC---CCHHHHHHHHHHHHHcCC-CCEeecC-----CCceehH---hHHH
Confidence 232 466554431 13544433 368999999999999873 4444333 3346778 5678
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|+..+.++..+++++|..++...
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999889999999999764
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-12 Score=124.80 Aligned_cols=254 Identities=16% Similarity=0.133 Sum_probs=145.7
Q ss_pred cEEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEECCHHHHH-----HHHcCCCCCcCCChHH
Q 011641 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~-----~l~~~~~~~~e~~l~~ 56 (480)
|||.|.|+|+ -|.+||.+|+++ ||+|++||+++++.+ .+.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 8999999995 588999999998 999999999987653 2332
Q ss_pred HHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+...++++.+++++||+||+|+|++ ..++++++++.+.++++++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 13456778888899999999999964 245667788999999999999999999988765
Q ss_pred -HHHHHHhcCCCCceEE-eeCCccccccccccccCCCCeEEEecCC----CcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 137 -IEKILTHNSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRE----TPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~----~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
+.+.|+-.. .++.+ .|+|-- .||..-++ ..++++.. ...+++..+++-++-++... ..+.. .
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~~-vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~-~~~~~-p-- 193 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPAA-VPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTGK-KAYVV-P-- 193 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCCC-CCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhCC-Ceeec-c--
Confidence 445454221 23333 356642 34432221 23344431 23367888888888888752 33322 2
Q ss_pred hHHHhhhhHh---HHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHhcCC-CCCCCCCccCCCCccccchhHhHHHHHHHHH
Q 011641 211 SAELSKLAAN---AFLAQRISSVNAMSALC-EATGANVSQVAFAVGTD-SRIGPKFLNASVGFGGSCFQKDILNLVYICE 285 (480)
Q Consensus 211 ~ae~~Kl~~N---~~~~~~ia~~nE~~~l~-~~~Gid~~~v~~~~~~~-~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~ 285 (480)
|+++--+.. ..-++.++.+-+....+ +-+|+...-+-..+... ..+ ..+.-.-|+.|--=.-||..|+..|+
T Consensus 194 -a~l~~~v~Dm~s~vta~~~~gil~y~~~~t~i~~ap~~~~~~~~~~~l~~~--a~l~~~~Gi~~~~~~l~p~~l~~sa~ 270 (341)
T TIGR01724 194 -ADVTSAVADMGSLVTAVALAGVLDYYYVGTQIINAPKEMIEKQILMTLQTM--ASLVETSGVEGMAKAINPELLVKSAR 270 (341)
T ss_pred -hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHhcCHHHHHhhhh
Confidence 122211111 11122222222322222 22333322111111100 000 00111112222222237788998898
Q ss_pred HCCCChhhHHHHHHHHHhHH
Q 011641 286 CNGLPEVAEYWKQVIKINDY 305 (480)
Q Consensus 286 ~~g~~~~~~~~~~~~~~N~~ 305 (480)
+..+.+..+.+..++++=+.
T Consensus 271 sM~~~~~~~~l~~~l~~l~~ 290 (341)
T TIGR01724 271 SMHLLDRQEDLDAALKIISD 290 (341)
T ss_pred hcccchHHHhHHHHHHHHHH
Confidence 88777666677776655443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-12 Score=125.38 Aligned_cols=195 Identities=11% Similarity=0.142 Sum_probs=120.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC----eEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ |+ +|++| |+++++.+.+.+. +++.+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 8999999999999999999998 77 89999 9999988776542 245667777888
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++||+||+||| |. .++++++++.+.++++++||.. ++++ .+.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~---~~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGIT---LADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCc---HHHHHHHcCC----CC-EEEEC
Confidence 89999999996 32 3577788888888888877632 3333 2333332221 11 12234
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhh--hHhHHHHHHHHHHHHH
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL--AANAFLAQRISSVNAM 233 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl--~~N~~~~~~ia~~nE~ 233 (480)
|..... .. ... .++..+.. .+++..+.++++|+.++ ..++...-..-..+-+ ....|.+..+..+.|
T Consensus 117 P~~~~~---~~--~~~-~~l~~~~~--~~~~~~~~v~~l~~~~G--~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~e- 185 (266)
T PLN02688 117 PNTPCL---VG--EAA-SVMSLGPA--ATADDRDLVATLFGAVG--KIWVVDEKLLDAVTGLSGSGPAYIFLAIEALAD- 185 (266)
T ss_pred CCcHHH---Hh--Cce-EEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHcchhHhhhcCHHHHHHHHHHHHHH-
Confidence 432111 10 011 22222221 24778999999999986 2443321000001111 112233344444444
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 011641 234 SALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~~ 253 (480)
.+.+.|+|.++..+++..
T Consensus 186 --a~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 186 --GGVAAGLPRDVALSLAAQ 203 (266)
T ss_pred --HHHHcCCCHHHHHHHHHH
Confidence 488999999999998864
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=128.28 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=151.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH---hhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
+.|||||+|.||..+|.+++++ |+.|.+|+|+.++.+.+-++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 3599999999999999999999 99999999999999987653211 112333334433 3567
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
..-|+++|... +.+...++++.++|.++.|||+-.. ..+.|.++..+. .+.+ .. |+..+-.
T Consensus 68 PRkI~lMVkAG--------------~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~G--i~-FvG~GVS 129 (473)
T COG0362 68 PRKILLMVKAG--------------TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEKG--IL-FVGMGVS 129 (473)
T ss_pred CceEEEEEecC--------------CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-HhcC--Ce-EEecccc
Confidence 78899998753 2356789999999999999998753 466777665443 4432 23 2333332
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC---C--CeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP---E--DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~---~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
-..+|. ++.|.+|.||. +++.+.++++|..+.- + .+.+.+.-+++..+|+++|-.-.--+.++.|
T Consensus 130 GGEeGA-----~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEGA-----RHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred cccccc-----ccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 233332 45566889996 8999999999997642 1 2245566788899999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc
Q 011641 233 MSALCEA-TGANVSQVAFAVG 252 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~~~ 252 (480)
...+.+. +|++..++.+.+.
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999988 8998877766664
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-12 Score=125.38 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=110.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..|.+. | ++|++||+++++.+.+++... ....+++.++++++|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 7899999999999999999987 6 489999999998877664211 112345666778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc-
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|+|.+ .+.++++++.+.++++++|++.+++.....+.+.+.+.. +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999998853 235667788888888998887766655444444333322 112 34445643
Q ss_pred ---ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011641 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~ 208 (480)
.+++.+..+++....+++... ...+++..+.+.++++.++ ..+...+
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~-~~~~~~~~~~~~~l~~~lG--~~~~~~~ 178 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPP-EGTDPAAVARLTAFWRALG--ARVEEMD 178 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCC-CCCCHHHHHHHHHHHHHcC--CEEEEcC
Confidence 344444444444444545422 2224778899999999986 3555544
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-12 Score=125.66 Aligned_cols=257 Identities=18% Similarity=0.110 Sum_probs=154.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||+.+|..|+++ |++|+++.+++. +.+++....+....-+.. .....++++.++ ...+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDSVHGDFH-----LPPVQAYRSAED-MPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEeCCCCee-----ecCceEEcchhh-cCCCC
Confidence 38999999999999999999998 999999999863 455543332211100000 011344555543 67899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+.+.++++|+. -+...+..+.+.+.+.+... ..-.+..+-.+..
T Consensus 75 ~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~ 137 (313)
T PRK06249 75 WVLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVG 137 (313)
T ss_pred EEEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCC
Confidence 9999998642 25677888888888776653 34455666667666644211 0001112223445
Q ss_pred ccccccccCCCCeEEEecCCCcch-----HHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH--------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEG-----QKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA-------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~-----~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------- 221 (480)
||...+. ...++.+|..+.. + .+..+.+.++|+..+. ......|+...-|.|++.|+
T Consensus 138 pg~v~~~--~~g~~~iG~~~~~-~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 138 PGVIHHL--AYGRVNLGYHSGP-AADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CeEEEEC--CCCcEEEecCCCC-cccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 6654432 2234567764321 2 3556677888887542 34456799999999999885
Q ss_pred -------HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhcCCCCCCCCCccCCCCccccchhHh--HHHHHHHHHHC
Q 011641 222 -------FLAQRISSVNAMSALCEATGAN-----VSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD--ILNLVYICECN 287 (480)
Q Consensus 222 -------~~~~~ia~~nE~~~l~~~~Gid-----~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD--~~~l~~~a~~~ 287 (480)
.+.+..+.+.|+..++++.|++ .+++++.+...+...+.+++ .. -.|.-..-| ..++++.++++
T Consensus 214 ~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~q-D~-~~gr~tEid~i~G~vv~~a~~~ 291 (313)
T PRK06249 214 PLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYH-DF-EEGRPLELEAIYANPLAAARAA 291 (313)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHH-HH-HCCCcccHHHHhhHHHHHHHHh
Confidence 3456677899999999999986 33444444332211111110 00 011222222 24678889999
Q ss_pred CCC
Q 011641 288 GLP 290 (480)
Q Consensus 288 g~~ 290 (480)
|++
T Consensus 292 Gi~ 294 (313)
T PRK06249 292 GCA 294 (313)
T ss_pred CCC
Confidence 987
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=143.45 Aligned_cols=204 Identities=17% Similarity=0.225 Sum_probs=141.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. .++++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGV-----LSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 36899999999999999999998 99999999999876542210 001111111221 25789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.|||.. .+++ .++++++.+.+++++|+ .++||+++.. +...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVEN-----------PKVK--AAVLAEVEQKVREDTILASNTSTISISL---LAKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccCc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCCccEEE
Confidence 9965 89999999999853 3444 78999999999999987 4556666543 3333322211 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..||.|.. +++++.+.+..+++.+++ .++.+. +.-.++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------VEvv~g~~---T~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfv~n---Ri~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMPL---------VEVIRGEK---TSDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (715)
T ss_pred Eec---CCcccccce---------EEeeCCCC---CCHHHHHHHHHHHHHhCC-ceEEec-----CcCchhHH---HHHH
Confidence 222 455443331 13555543 268999999999999874 566553 45567788 5678
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+++||+..+.++. +++++|..++..
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~ 529 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEK 529 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 8999999998865 999999998864
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-12 Score=140.56 Aligned_cols=205 Identities=17% Similarity=0.230 Sum_probs=141.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. ..+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGV-----LNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 46899999999999999999998 99999999999887653211 001111111111 24789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++++ +++||+||.||+.. .+++ ++++.++.+.+++++|+. +.|++++.. +...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVEN-----------PKVK--AAVLAEVEQHVREDAILASNTSTISISL---LAKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEE
Confidence 9854 89999999999853 3334 789999999999999874 445666543 3332322111 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..||-|.. +++++.+.+..++..+++ .++.+. +.-.++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------vEvv~g~~---Ts~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfi~N---Rl~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMPL---------VEVIRGEK---SSDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (714)
T ss_pred Eec---CCCcccCce---------EeecCCCC---CCHHHHHHHHHHHHHcCC-EEEEeC-----CcccchHH---HHHH
Confidence 222 455544431 13554433 378999999999999874 556553 34567888 5678
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|...+.++ |+++++|..++...
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~~ 530 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEKQ 530 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHhc
Confidence 899999999875 59999999988643
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=125.65 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=110.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+........+ .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999998 899999999877654433211100 01234677777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc---
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE--- 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe--- 157 (480)
||+|||.. .+.++++++.+ .++++++|++.+++.....+.+.+.+... .. ++..+|-
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~---~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDL---IR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC---Ce-EEeeCCcCcC
Confidence 99999842 35677888887 47888888887877766665554443221 12 3444563
Q ss_pred -cccccccccccCCC-CeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCc
Q 011641 158 -FLAEGTAIQDLFNP-DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNL 209 (480)
Q Consensus 158 -~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~ 209 (480)
+.++..+..+++.. ..++..+ ...+++..+.++++++.++ ..+..++.
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~--~~~~~~~~~~v~~l~~~lG--a~~v~~~~ 174 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPD--DHTDPDAVAELKDLLSGTG--AKFVVLDA 174 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecC--CCCCHHHHHHHHHHHHHcC--CEEEECCH
Confidence 33333344444433 3344332 2235788999999999986 35544443
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=140.82 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=139.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----------CCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.+|+|||+|.||..+|..++.+ |++|+++|++++.++...+.. ..+.+...+. ..++++.++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 407 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDS-----ILSNLTPTL 407 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEEeC
Confidence 36899999999999999999998 999999999998876533210 0011111111 125789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.||+.. .+++ .++++++.+.+++++|+ .+.||+++.. +...+..... |
T Consensus 408 ~~~-~~~~aDlViEAv~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig 470 (737)
T TIGR02441 408 DYS-GFKNADMVIEAVFED-----------LSLK--HKVIKEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIG 470 (737)
T ss_pred CHH-HhccCCeehhhcccc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEE
Confidence 996 489999999999853 3444 78999999999999987 4556666544 3333322111 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-|.. +++++.+.+..+++.+++ .++.+.+ .-.++.| .+..
T Consensus 471 ~Hf---f~P~~~m~L---------vEvv~g~~---Ts~~~~~~~~~~~~~lgk-~pv~v~d-----~pGFi~N---Ri~~ 526 (737)
T TIGR02441 471 MHY---FSPVDKMQL---------LEIITHDG---TSKDTLASAVAVGLKQGK-VVIVVKD-----GPGFYTT---RCLG 526 (737)
T ss_pred Eec---cCCcccCce---------EEEeCCCC---CCHHHHHHHHHHHHHCCC-eEEEECC-----cCCchHH---HHHH
Confidence 222 455544331 13554433 378999999999999874 5565543 3457778 5668
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Q 011641 228 SSVNAMSALCEATGANVSQVAFAV 251 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~ 251 (480)
++++|+..+.++ |+++++|..++
T Consensus 527 ~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 527 PMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Confidence 999999999876 67999999886
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-12 Score=138.51 Aligned_cols=204 Identities=19% Similarity=0.188 Sum_probs=138.2
Q ss_pred CcEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHh---------hhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK---------QCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~---------~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++ .+ |++|+++|++++.++...... +..++..++ .....+++.++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYA----WKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 468999999999999999998 47 999999999998766533210 000111100 00125789999
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||.. .+++ .+++.++.+.+++++|+. +.|++++.. +...+..... |
T Consensus 378 ~~~-~~~~adlViEav~E~-----------l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~~g 440 (699)
T TIGR02440 378 DYR-GFKDVDIVIEAVFED-----------LALK--HQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAASRPENVIG 440 (699)
T ss_pred ChH-HhccCCEEEEecccc-----------HHHH--HHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhcCCcccEEE
Confidence 986 589999999999852 3333 789999999999999874 445666543 3333322211 2
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| ++|....+- ..||-|.. +++++.+.+..+++.+++ .++.+.+ .-.++.| .+..
T Consensus 441 ~Hf---fnP~~~~~l---------VEvv~g~~---T~~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 496 (699)
T TIGR02440 441 LHY---FSPVEKMPL---------VEVIPHAG---TSEQTIATTVALAKKQGK-TPIVVAD-----KAGFYVN---RILA 496 (699)
T ss_pred Eec---CCccccCce---------EEEeCCCC---CCHHHHHHHHHHHHHcCC-eEEEEcc-----ccchHHH---HHHH
Confidence 222 355443331 13554433 378999999999999874 5665533 4457777 6778
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
+++||...+.++ |++++++..++.
T Consensus 497 ~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 497 PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 999999999874 679999998884
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=120.03 Aligned_cols=202 Identities=18% Similarity=0.161 Sum_probs=123.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.+|+..|.+++ ..++|+++|+++++.+.+.+. .+++.+++..+++++|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHhhC
Confidence 78999999999999999999871 123799999999998876541 0234566777778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+||| |. .+.++++++.+.++++++|| |....=+.+.+++.+.... .+ .|.
T Consensus 65 DiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~~---~v------vR~ 118 (272)
T PRK12491 65 DILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRKL---KV------IRV 118 (272)
T ss_pred CEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCCC---cE------EEE
Confidence 99999998 42 35778888988888887776 3333333455666553211 11 233
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.|-.+..-.... ..+..+ +..+++..+.++.+|+.++. .+.. +-..-...=-+.-+-=+....++..+...+.+
T Consensus 119 MPN~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~-~E~~~d~~talsgsgPAf~~~~~eal~~a~v~ 192 (272)
T PRK12491 119 MPNTPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVL 192 (272)
T ss_pred CCChHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEE-cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 332221111111 122222 22356678899999999863 4433 21110111111111113445566777778888
Q ss_pred hCCCHHHHHHHhcC
Q 011641 240 TGANVSQVAFAVGT 253 (480)
Q Consensus 240 ~Gid~~~v~~~~~~ 253 (480)
.|++.++..+++..
T Consensus 193 ~Gl~~~~A~~l~~~ 206 (272)
T PRK12491 193 GGMPRKQAYKFAAQ 206 (272)
T ss_pred cCCCHHHHHHHHHH
Confidence 89998877776653
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=118.13 Aligned_cols=198 Identities=16% Similarity=0.158 Sum_probs=124.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC---CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|.||..+|..|.++ | ++|++||+++++.+.+.+.. ++..+++.++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999987 7 78999999999888776520 2344567777788
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++|+||+|+|.. .+.++++++.+.+ +++|+.. +.++ .+.+++.+.. +.. .+-..|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999742 3577888888776 3455432 3232 2344444431 111 233455
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhh-hhHhHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK-LAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (480)
.... . +......+.-+ ...+++..+.++.+|+.++ ..+...+...-...= +..+ .-+....++..+..
T Consensus 118 ~~p~---~---~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA---L---VGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGS-GPAYVFLFIEALAD 186 (267)
T ss_pred CchH---H---HcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcC-hHHHHHHHHHHHHH
Confidence 3211 0 01111122222 2235788999999999986 355554333222211 2222 12333567788888
Q ss_pred HHHHhCCCHHHHHHHhcC
Q 011641 236 LCEATGANVSQVAFAVGT 253 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~ 253 (480)
.+.+.|++.++..+++..
T Consensus 187 ~~~~~Gl~~~~a~~~~~~ 204 (267)
T PRK11880 187 AGVKLGLPREQARKLAAQ 204 (267)
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 889999999887777653
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=120.92 Aligned_cols=195 Identities=12% Similarity=0.185 Sum_probs=123.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ | ++|+++|+++ ++.+.+... .+++.+.++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~~ 63 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKELL 63 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHHH
Confidence 8999999999999999999987 6 8999999975 466666531 1245667777878
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++||+||+|||.. .+.++++++.+.++++++||.. +++.+.+.++ .+... .. .+-..
T Consensus 64 ~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~---~~-v~r~m 121 (279)
T PRK07679 64 TDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKD---VP-IIRAM 121 (279)
T ss_pred hcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCC---Ce-EEEEC
Confidence 9999999999842 2466778888888888888775 7777665444 33221 11 12223
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhH--HHhhhh--HhHHHHHHHHHHH
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSA--ELSKLA--ANAFLAQRISSVN 231 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~a--e~~Kl~--~N~~~~~~ia~~n 231 (480)
|... .. .. ....++.++.+ .+++..+.++++|+.++. .+... +.- ..+-+. ...| ...++.
T Consensus 122 Pn~~--~~-~~---~~~t~~~~~~~--~~~~~~~~v~~l~~~~G~--~~~v~--e~~~~~~~a~~Gsgpa~---~~~~~e 186 (279)
T PRK07679 122 PNTS--AA-IL---KSATAISPSKH--ATAEHIQTAKALFETIGL--VSVVE--EEDMHAVTALSGSGPAY---IYYVVE 186 (279)
T ss_pred CCHH--HH-Hh---cccEEEeeCCC--CCHHHHHHHHHHHHhCCc--EEEeC--HHHhhhHHHhhcCHHHH---HHHHHH
Confidence 3211 11 10 11135556542 256788999999999863 44432 110 001111 1112 233344
Q ss_pred HHHHHHHHhCCCHHHHHHHhcC
Q 011641 232 AMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 232 E~~~l~~~~Gid~~~v~~~~~~ 253 (480)
-+...+++.|+|.++..+++..
T Consensus 187 al~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 187 AMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4444689999999888888765
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=120.24 Aligned_cols=169 Identities=20% Similarity=0.303 Sum_probs=100.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCC----C-cCCChH-HHHhhhcCCCEEEecCHHHhh
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP----I-YEPGLD-GVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~----~-~e~~l~-~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... . ....+. +.... ..+++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADA-ALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHH-HHHTEEEESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhh-hhhhcccccCHHHHh
Confidence 799999999999999999998 99999999999876654321000 0 000000 11111 124789999999865
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--CCceEEe
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIKFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+||+||.|+|.. +..-+++++.+.+.+++++++. +.|++++.. +...+....+ |.+|
T Consensus 78 -~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~R~ig~Hf--- 137 (180)
T PF02737_consen 78 -DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSISE---LAAALSRPERFIGMHF--- 137 (180)
T ss_dssp -TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGGGEEEEEE---
T ss_pred -hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCceEEEEec---
Confidence 999999999852 2333789999999999999884 445555443 2222221111 2222
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT 207 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~ 207 (480)
|+|.+..+- -.|+-|.. +++++.+.+..+++.+++ .++.+.
T Consensus 138 ~~P~~~~~l---------VEvv~~~~---T~~~~~~~~~~~~~~~gk-~pv~v~ 178 (180)
T PF02737_consen 138 FNPPHLMPL---------VEVVPGPK---TSPETVDRVRALLRSLGK-TPVVVK 178 (180)
T ss_dssp -SSTTT--E---------EEEEE-TT---S-HHHHHHHHHHHHHTT--EEEEEE
T ss_pred ccccccCce---------EEEeCCCC---CCHHHHHHHHHHHHHCCC-EEEEec
Confidence 355544331 13555544 378999999999999863 555543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-10 Score=113.14 Aligned_cols=168 Identities=22% Similarity=0.261 Sum_probs=111.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE--ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH-HHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV-EKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~--D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~-~~a~~ 77 (480)
+|+|+|+|+|.||..+|..|.++ |+.|.++ |++.+..+.-... |+ .-..+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~l-------gv----------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALEL-------GV----------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhc-------Cc----------ccccccchhhhhcc
Confidence 48999999999999999999998 8877555 4444443332211 00 01122332 45578
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||-. ...++++.+.+.++++++|++-+++.....+.+.+.+.+ .. -++..+|-
T Consensus 64 ~aD~VivavPi~---------------~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~---~~-~~vg~HPM 124 (279)
T COG0287 64 EADLVIVAVPIE---------------ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG---DV-RFVGGHPM 124 (279)
T ss_pred cCCEEEEeccHH---------------HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccC---CC-eeEecCCC
Confidence 899999998842 457888999999999999998665554444444333322 12 35667787
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
+..+ +..+++.+..+|+ ++....+.+.++.+.++|+.++ ..+..++++.
T Consensus 125 ~G~~--~~~~lf~~~~~vl-tp~~~~~~~~~~~~~~~~~~~g--a~~v~~~~ee 173 (279)
T COG0287 125 FGPE--ADAGLFENAVVVL-TPSEGTEKEWVEEVKRLWEALG--ARLVEMDAEE 173 (279)
T ss_pred CCCc--ccccccCCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--CEEEEcChHH
Confidence 6554 4455666666665 4544445778999999999875 4677776553
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=136.61 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=139.3
Q ss_pred CcEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
+.||+|||+|.||..+|..++ .. |++|+++|++++.++...+. ...+.+...+. ...+++.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDK-----QMALISGT 381 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhcEEEe
Confidence 468999999999999999999 76 99999999999876653210 00111111111 12578999
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+|++ ++++||+||.|||.. .+++ +++++++.+++++++|+. ++|++++.. +...+.....
T Consensus 382 ~~~~-~~~~aDlViEav~E~-----------~~~K--~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~i 444 (708)
T PRK11154 382 TDYR-GFKHADVVIEAVFED-----------LALK--QQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAAARPEQVI 444 (708)
T ss_pred CChH-HhccCCEEeeccccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhcCcccceE
Confidence 9985 589999999999852 3333 789999999999999884 445566544 3322322111
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| |+|.+..+- ..||-|.. +++++.+.+..++..+++ .++.+.| .-.++.| .+.
T Consensus 445 g~Hf---f~P~~~~~l---------VEvv~g~~---Ts~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~ 500 (708)
T PRK11154 445 GLHY---FSPVEKMPL---------VEVIPHAK---TSAETIATTVALAKKQGK-TPIVVRD-----GAGFYVN---RIL 500 (708)
T ss_pred EEec---CCccccCce---------EEEECCCC---CCHHHHHHHHHHHHHcCC-ceEEEec-----cCcHHHH---HHH
Confidence 2222 455544331 13554433 378999999999999874 4555432 3456777 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhc
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
.+++||...+.++ |++++++..++.
T Consensus 501 ~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 501 APYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 9999999999987 789999988875
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-11 Score=114.52 Aligned_cols=186 Identities=12% Similarity=0.162 Sum_probs=120.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe---EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|.+. |+. +.++++++++.+.+.+.. +..+.+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 6999999999999999999987 643 588999999887766421 124556788887889
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+| |. .+.++++++. +.++++||. +..+-+.+.+.+.+.... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 2456666652 456777764 455555667777664321 1 23344542
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-----HHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA-----FLAQRISSVNAM 233 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----~~~~~ia~~nE~ 233 (480)
.. ...... ..+.++ . +.++++|+.++. .+...+. |...++ +.+....++.++
T Consensus 119 ~~-----a~~~g~-t~~~~~------~---~~~~~l~~~lG~--~~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~ 175 (258)
T PRK06476 119 FV-----AERKGV-TAIYPP------D---PFVAALFDALGT--AVECDSE------EEYDLLAAASALMATYFGILETA 175 (258)
T ss_pred hh-----hhCCCC-eEecCC------H---HHHHHHHHhcCC--cEEECCh------HhccceeehhccHHHHHHHHHHH
Confidence 11 101111 122221 2 478899999863 4444322 122222 344445688899
Q ss_pred HHHHHHhCCCHHHHHHHhc
Q 011641 234 SALCEATGANVSQVAFAVG 252 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~ 252 (480)
..++++.|+|.++..+++.
T Consensus 176 ~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 176 TGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999988887775
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-10 Score=111.48 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=106.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
.|+|+|||+|.||..+|..|.+. |++|++||+++.. +....- ++...++.++++ .++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~~-------------------gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAEL-------------------GVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHHc-------------------CCeeeCCHHHHhhCCC
Confidence 37999999999999999999987 8999999998642 222110 133456777655 479
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHH-HhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVI-ADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||.. .+.++++++ .+.++++++|++.+++.....+.+.+.+.. +. -++..+|-+
T Consensus 94 DvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~-~~V~~HPma 154 (304)
T PLN02256 94 DVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EF-DILCTHPMF 154 (304)
T ss_pred CEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CC-eEEecCCCC
Confidence 9999998842 346777888 567888999887766554444555444432 12 256677766
Q ss_pred ccccccccccCCCCeEEEecC---CCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 159 LAEGTAIQDLFNPDRVLIGGR---ETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
..+... ..+....+++... ++.++++..+.++++++.++ ..+..++++.
T Consensus 155 G~e~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 155 GPESGK--GGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCCc--cccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 543211 1111112333221 02225678899999999985 4666666553
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=113.66 Aligned_cols=197 Identities=11% Similarity=0.152 Sum_probs=117.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.++|..|.++ | ++|++||+++++.+.+.+.. .++..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 7899999999999999999987 6 47999999998887765410 12456677777789
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||. ..+.++++++.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 1357788889888888887775442 12455565554321 1223332
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
. ++.+..+. ..++.|.. .+++..+.++++|+.++. .+... +...+. .-+.-+--+....++..+..-
T Consensus 119 ~--~~~~~~G~---t~~~~g~~---~~~~~~~~~~~ll~~~G~--~~~i~e~~~~~~--~~l~gs~pa~~~~~~~al~~~ 186 (273)
T PRK07680 119 I--TNRALSGA---SLFTFGSR---CSEEDQQKLERLFSNIST--PLVIEEDITRVS--SDIVSCGPAFFSYLLQRFIDA 186 (273)
T ss_pred h--HHHHhhcc---EEEeeCCC---CCHHHHHHHHHHHHcCCC--EEEEChHhcchh--hhhccchHHHHHHHHHHHHHH
Confidence 1 11111111 12333322 245677899999999863 44442 111111 111111001112222223333
Q ss_pred HHH-hCCCHHHHHHHhc
Q 011641 237 CEA-TGANVSQVAFAVG 252 (480)
Q Consensus 237 ~~~-~Gid~~~v~~~~~ 252 (480)
+.+ .|++.++..+++.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (273)
T PRK07680 187 AVEETNISKEEATTLAS 203 (273)
T ss_pred HHHhcCCCHHHHHHHHH
Confidence 334 8999887776654
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=116.21 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHcCCCCeEEEEECCHHH-------HHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEecC--H
Q 011641 12 VGGPTMAVIALKCPSIEVAVVDISVSR-------INAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFSTD--V 72 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~-------v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~d--~ 72 (480)
||..+|..++.+ |++|++||++++. ++...+. ...+.+...+. ..++++++++ +
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA-----VLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEeecCcch
Confidence 799999999998 9999999999853 2211110 00010111111 1246888765 6
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--CCce
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKF 150 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
.+++++||+||.|||.. .+++ ..++.++.+.+++++++. ||.++-....+...+..... |.+|
T Consensus 74 ~~a~~~aD~ViEav~E~-----------~~~K--~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf 138 (314)
T PRK08269 74 ADALADADLVFEAVPEV-----------LDAK--REALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHW 138 (314)
T ss_pred HHHhccCCEEEECCcCC-----------HHHH--HHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEec
Confidence 67889999999999864 2333 567888999999998873 44444444555544432111 1121
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++|-+..+- ..| +++.. +++++++.+.++++.+++ .++++.+... +....+..+++
T Consensus 139 ---~~Pp~~~~l---------vEV-v~g~~--t~~e~~~~~~~ll~~lGk-~~v~v~d~~G--------fi~nri~~~~l 194 (314)
T PRK08269 139 ---LNPAYLMPL---------VEV-SPSDA--TDPAVVDRLAALLERIGK-VPVVCGPSPG--------YIVPRIQALAM 194 (314)
T ss_pred ---CCccccCce---------EEE-eCCCC--CCHHHHHHHHHHHHHcCC-cEEEecCCCC--------cchHHHHHHHH
Confidence 233322220 123 45543 368999999999999874 5666655432 23457889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 231 NAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+|...++++.++|++++.+++...
T Consensus 195 ~EAl~l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 195 NEAARMVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999999999999999999755
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=129.11 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..|.++ | ++|++||+++++++.+.+.+.. ...+++..+++.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~~-----------------~~~~~~~~~~~~~a 64 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGVI-----------------DRGEEDLAEAVSGA 64 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCCC-----------------CcccCCHHHHhcCC
Confidence 6899999999999999999987 6 5899999999987776542110 11245667778899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||. ..+.++++.+.+.++++++|++.+++...+.+.+.+.+.... . -++..+|...
T Consensus 65 DvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~--~-r~~~~hPm~G 126 (735)
T PRK14806 65 DVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP--A-GFVPGHPIAG 126 (735)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC--C-eEEecCCcCc
Confidence 999999984 246788889999888889998888888777777766654321 1 1355677543
Q ss_pred ccc----ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011641 160 AEG----TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (480)
Q Consensus 160 ~~G----~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.++ .+...++....+++- .....+++..+.++++++.++ ..+...+.+
T Consensus 127 ~~~~g~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~ 178 (735)
T PRK14806 127 SEKSGVHAANADLFRNHKVILT-PLAETDPAALARVDRLWRAVG--ADVLHMDVA 178 (735)
T ss_pred CCcchhhhhhhHHhCCCeEEEE-CCCCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 332 122334333334332 222335678889999999986 355555543
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-10 Score=113.06 Aligned_cols=209 Identities=22% Similarity=0.222 Sum_probs=142.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|+|.||+-+|..|+++ |++|+++-|++. ++++++....+.+..-... -....+.+ .+....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~------~~~~~~~~-~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGGNFT------TPVVAATD-AEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCCccc------cccccccC-hhhcCCCCE
Confidence 8999999999999999999998 889999988766 8999986655543222000 01122233 334679999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce-EEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF-QILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~v~~~Pe~~~ 160 (480)
||++|++.. +.++++.+.+.+++++.|+. -....|..+.+.+...+... -+ .+..+-.+-.
T Consensus 71 viv~vKa~q---------------~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~i--l~G~~~~~a~~~~ 132 (307)
T COG1893 71 VIVTVKAYQ---------------LEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETV--LGGVTTHGAVREG 132 (307)
T ss_pred EEEEecccc---------------HHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceE--EEEEeeeeeEecC
Confidence 999998642 47889999999999887653 34566777777666655411 01 1223334445
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
+|...+.-. ..+.+|..... .++..+.+.++|+...- ...+..|+....|.|++-|+
T Consensus 133 ~g~v~~~g~--g~~~ig~~~~~-~~~~~~~i~~~~~~a~~-~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~ 208 (307)
T COG1893 133 PGHVVHTGL--GDTVIGELRGG-RDELVKALAELFKEAGL-EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLEN 208 (307)
T ss_pred CceEEEecC--CcEEEccCCCC-chHHHHHHHHHHHhCCC-CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcC
Confidence 666544331 24556755321 23567788888876542 33455789999999999886
Q ss_pred --HHHHHHHHHHHHHHHHHHhCC
Q 011641 222 --FLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~Gi 242 (480)
.+.+..+.+.|...++.+.|+
T Consensus 209 ~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 209 PEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHhccC
Confidence 566777889999999999993
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-10 Score=112.38 Aligned_cols=231 Identities=11% Similarity=0.113 Sum_probs=136.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+ |.||..+|..|.+. .+++|+++|++.+ .++++++++++||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 68999999 99999999999975 2899999998410 1235566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh---CCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV---SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~---l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|. +.+.++++++.+. ++++++|++-+++.....+.+ ++ .. .. ++..+|-
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~-~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LA-SQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---Hh-cC--CC-EEeeCCC
Confidence 99999884 3457778888875 789999998766654333332 22 21 23 5778887
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-HHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
+..+.. +++....+++- +.. ..+..+.++++++.++ ..+..++++. -+++-+++-.-+...+++.+ +
T Consensus 112 aG~E~s---~lf~g~~~ilt-p~~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~----~ 179 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVC-EAR--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALVQAMVHATHLAQAG----V 179 (370)
T ss_pred CCCCCC---cccCCCeEEEe-CCC--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 765533 23444445443 221 3455778899999875 4666777653 23333332222222233221 1
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
+.....+..+. ..+.+|.+.-|.-|+..+.+.|.+. ..+|..+...|. .-....+.+.+
T Consensus 180 ~~~~~~~~~~~---------------~~~~~f~~~gFr~d~t~iTRIAss~-----P~mW~dI~~~N~-~i~~~l~~~~~ 238 (370)
T PRK08818 180 LRDYAPLLGEL---------------RALMPYRSASFELDTAVIARILSLN-----PSIYEDIQFGNP-YVGEMLDRLLA 238 (370)
T ss_pred HHhcccchhhh---------------hhhccccchhhHHHhhhcchhhcCC-----HHHHHHHHHhCH-HHHHHHHHHHH
Confidence 11111000010 1112344444444665556666543 578998888887 34444444444
Q ss_pred Hh
Q 011641 317 SM 318 (480)
Q Consensus 317 ~l 318 (480)
.+
T Consensus 239 ~L 240 (370)
T PRK08818 239 QL 240 (370)
T ss_pred HH
Confidence 43
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-11 Score=117.67 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=134.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|+|+|.||+.+|..|++. |++|++++++.++++++++ ++..+...+-.... .... .+.+ ....+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~------~~~~-~~~~-~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY------AIPA-ETAD-AAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceee------ccCC-CCcc-cccccC
Confidence 8999999999999999999998 9999999999889999975 33333221110000 0111 1112 246789
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEe-eCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-SNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~Pe~~ 159 (480)
+||+||++. | +.++++.+.+.+.++++|+. -....+..+.+.+.+.+... -..+. .+..+.
T Consensus 73 ~viv~vK~~------------~---~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY------------D---AEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH------------h---HHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 2 46788999999998886653 34556666667666543210 01122 233445
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH---------------H-
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF---------------L- 223 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~---------------~- 223 (480)
.||...+.... .+.+|... .+..+.+.++|...+- ......|+...-|.|++-|+- +
T Consensus 135 ~pg~v~~~~~g--~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGHG--FTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEeceE--EEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 67766543322 24467542 2345667777876431 233456899999999998861 1
Q ss_pred --HHHHHHHHHHHHHHHHhCCC
Q 011641 224 --AQRISSVNAMSALCEATGAN 243 (480)
Q Consensus 224 --~~~ia~~nE~~~l~~~~Gid 243 (480)
....+++.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 23457789999999999875
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=113.11 Aligned_cols=207 Identities=13% Similarity=0.165 Sum_probs=149.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh---hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
+.|+.|||+.||..++.+.+++ |+.|.+|+|+.++++.+...... ...+.-..++++- ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 5699999999999999999999 99999999999999876542111 0011122333432 456
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-CcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
...|++-|... +.+...++++.++|.++.+||+-... .+.|.++..+. .+.+ . .+|..+-.
T Consensus 71 PR~iillvkAG--------------~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el-~k~G--i-lfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAG--------------APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCREL-AKKG--I-LFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCC--------------CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHH-HhcC--c-EEEecCcc
Confidence 77888888753 23567789999999999999986543 55666666544 3332 1 34444433
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC----C--CeEEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP----E--DRILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~----~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
-..+|. +..|.+|.||. +++...++.+|+.+.. + ...++++-+++..+|+++|-.-.--++++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 333432 45566888986 8899999999987531 1 234667888999999999999988999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc
Q 011641 232 AMSALCEA-TGANVSQVAFAVG 252 (480)
Q Consensus 232 E~~~l~~~-~Gid~~~v~~~~~ 252 (480)
|...+... +|.+-.++.+++.
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7888777777664
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-10 Score=109.50 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=116.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.++|..|.++ | ++|++|++++ ++.+.+.+.. +....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~~-----------------~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDKY-----------------PTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHHc-----------------CCeEEeCCHHHH
Confidence 79999999999999999999987 6 7899999864 4455443310 123456777777
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch-HHHHHHHHHhcCCCCceEEee
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHNSKGIKFQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (480)
++++|+||+|||. ..+.++++++.+.++++++|+. . ..|. .+.+++.+... .+
T Consensus 62 ~~~aDvVilavpp---------------~~~~~vl~~l~~~l~~~~~ivS--~-~aGi~~~~l~~~~~~~----~v---- 115 (277)
T PRK06928 62 FTKCDHSFICVPP---------------LAVLPLLKDCAPVLTPDRHVVS--I-AAGVSLDDLLEITPGL----QV---- 115 (277)
T ss_pred HhhCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEE--E-CCCCCHHHHHHHcCCC----CE----
Confidence 8999999999983 2357788889888887776653 2 2233 34565554321 11
Q ss_pred CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.|..|..+..-.... ..+..+ +..+++..+.++.+|+.++. .+.... ..-...--+.-+.-+....++..+.
T Consensus 116 --vR~MPN~~~~~g~g~-t~~~~~--~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~tal~gsgPA~~~~~~~al~ 187 (277)
T PRK06928 116 --SRLIPSLTSAVGVGT-SLVAHA--ETVNEANKSRLEETLSHFSH--VMTIRE-ENMDIASNLTSSSPGFIAAIFEEFA 187 (277)
T ss_pred --EEEeCccHHHHhhhc-EEEecC--CCCCHHHHHHHHHHHHhCCC--EEEEch-hhCceeeeeecCHHHHHHHHHHHHH
Confidence 122332211111111 122222 22356778899999999863 443321 1000111111122233344555566
Q ss_pred HHHHHh-CCCHHHHHHHhc
Q 011641 235 ALCEAT-GANVSQVAFAVG 252 (480)
Q Consensus 235 ~l~~~~-Gid~~~v~~~~~ 252 (480)
.-+.+. |++.++..+++.
T Consensus 188 ~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 188 EAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHhCCCCHHHHHHHHH
Confidence 666676 688776666554
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-09 Score=115.54 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=104.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-cCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+- ++...++.++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~-------------------Gv~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL-------------------GVSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc-------------------CCeEeCCHHHHHhcCCC
Confidence 7999999999999999999987 8999999998643 222211 1345567777565 589
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||.. .+..+++++.. .++++++|++.+++.....+.+.+.+.. +.. ++..+|-+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 24566777765 5788999998887763333444444332 222 455777655
Q ss_pred cccc-----cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 160 AEGT-----AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 160 ~~G~-----a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
.+.. ....++.+ ++++++.. ..+..+.+.+++..++ .++..++++.
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~~--~~~~~~~l~~l~~~lG--a~vv~ms~ee 539 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDDR--RVSRCDSFLDIFAREG--CRMVEMSCAE 539 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCcc--hHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 4321 12223333 23454321 3445666778998885 4666666654
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=105.93 Aligned_cols=201 Identities=17% Similarity=0.165 Sum_probs=124.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|+||.+|+..|.+++ +..+|++.++++++.+.+.+.. + +..+++..+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g-~~~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------G-VVTTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------C-CcccCcHHHHHhh
Confidence 789999999999999999999982 1269999999999987655420 1 1126777788899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+||+ |. .++++++++.+ ..++++|| |-...=+++.+...+.. . .+ .|
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~-~-----~v----vR 114 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGG-L-----RV----VR 114 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCC-C-----ce----EE
Confidence 999999998 43 25778888888 66788776 33333344556666651 1 11 12
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..|.....-...- ..+..+. ..+++..+.+.++|+.+++ .+.+.. ..-...--+.-.-=+....++..+..-+.
T Consensus 115 ~MPNt~a~vg~g~-t~i~~~~--~~~~~~~~~v~~l~~~~G~--v~~v~E-~~~da~TaisGSgPAyv~~~iEal~~agv 188 (266)
T COG0345 115 VMPNTPALVGAGV-TAISANA--NVSEEDKAFVEALLSAVGK--VVEVEE-SLMDAVTALSGSGPAYVFLFIEALADAGV 188 (266)
T ss_pred eCCChHHHHcCcc-eeeecCc--cCCHHHHHHHHHHHHhcCC--eEEech-HHhhHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2222111000001 1222222 2356778899999999863 444421 00001111111112334556777888888
Q ss_pred HhCCCHHHHHHHhcC
Q 011641 239 ATGANVSQVAFAVGT 253 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~ 253 (480)
+.|++.++..+++..
T Consensus 189 ~~Gl~~~~A~~l~~~ 203 (266)
T COG0345 189 RLGLPREEARELAAQ 203 (266)
T ss_pred HcCCCHHHHHHHHHH
Confidence 999998888777653
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-09 Score=103.44 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=118.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCe-EEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIE-VAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~-V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|++++ ...+ ++++++ ++++.+.+.+. .++..+++.++++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHVTS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHHhc
Confidence 57999999999999999998861 1123 778887 57777766542 123456788888899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec-CCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|+|.. .+.++++++.+.++ +++||..+ .+. .+.+++.+... .. .+...|.
T Consensus 67 ~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~---~~~l~~~~~~~---~~-v~r~~Pn 123 (245)
T PRK07634 67 VDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIG---PSYLEERLPKG---TP-VAWIMPN 123 (245)
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCC---HHHHHHHcCCC---Ce-EEEECCc
Confidence 99999998842 34677788887776 55665332 222 23354444321 11 2335664
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH---HHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---FLAQRISSVNAMS 234 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---~~~~~ia~~nE~~ 234 (480)
....- ....+.+..+. ..+++..+.++++|+.++. .+... . +....+.-+ --+....++..+.
T Consensus 124 ~a~~v-----~~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~---e-~~~~~~~a~~gs~pa~~~~~~~a~~ 189 (245)
T PRK07634 124 TAAEI-----GKSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT---E-EEVHQLTAVTGSAPAFLYYFAESLI 189 (245)
T ss_pred HHHHH-----hcCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC---H-HHcchHHhhhcchHHHHHHHHHHHH
Confidence 43210 01112222222 1257888999999999863 44332 1 112211111 1123345566677
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 011641 235 ALCEATGANVSQVAFAVG 252 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~ 252 (480)
..+.+.|++.++-.+++.
T Consensus 190 ~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 190 EATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 778889999888777775
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=93.89 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=68.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC---CeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS---IEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G---~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+|||+|.||.+++..|.++ | ++|+.+ ++++++.+.+.+.. ...++. +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKEY------------------GVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHHC------------------TTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHhh------------------ccccccCChHHhhc
Confidence 799999999999999999998 8 999955 99999999887531 234444 7788899
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
++|+||+|||. . .+.++++++ +...+++++|.
T Consensus 61 ~advvilav~p-~--------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKP-Q--------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-G-G--------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECH-H--------------HHHHHHHHH-hhccCCCEEEE
Confidence 99999999983 2 246778888 66667888874
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.5e-09 Score=100.40 Aligned_cols=183 Identities=18% Similarity=0.173 Sum_probs=111.9
Q ss_pred HHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCC
Q 011641 16 TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGL 95 (480)
Q Consensus 16 lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~ 95 (480)
+|..|.++++.++|+++|++++.++...+.+. .-...++ .++++++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----------------~~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-----------------IDEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----------------SSEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----------------eeeccCC-HhHhcCCCEEEEcCCH-------
Confidence 57788888444899999999998877643211 0123344 4568999999999873
Q ss_pred CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccccccccccCCCCeEE
Q 011641 96 GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175 (480)
Q Consensus 96 ~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vv 175 (480)
+.+..+++++.+.++++++|++.+++.....+.+.+.+.........+=.++||..++..+..+++....++
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~i 127 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWI 127 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEE
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEE
Confidence 356889999999999999999988887666666665555211111123345667777766777777776666
Q ss_pred EecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHhhhhHhHHHHHHHHHHHHHH
Q 011641 176 IGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW-SAELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 176 iG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
+- +...++++..+.+.++++.++ ..+..++++ .-+++-++.-.-..+..++++.+.
T Consensus 128 l~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~ 184 (258)
T PF02153_consen 128 LC-PGEDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTLA 184 (258)
T ss_dssp EE-ECTTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred Ee-CCCCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 333345678999999999885 456666654 334445555544555555555333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5e-09 Score=99.88 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=70.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCC-CcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+||| +|.||.++|..|+++ ||+|+++++++++++.+++.... +...+. ..+++.+ +..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~~-~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTGA-DNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEEe-ChHHHHhcC
Confidence 7999997 899999999999998 89999999999998887642110 000000 0012333 446678999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||+|||.. .+.++++++.+.++ +++||..+
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~-~~vvI~~~ 101 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELS-GKLVISPV 101 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhcc-CCEEEEec
Confidence 9999999843 35677778877666 47666543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-09 Score=103.61 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=116.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.+++..|.+++ ...+++++|+++++. ....+.+..+++++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 58 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAKTC 58 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHHhC
Confidence 89999999999999999999861 013599999876531 122345666777899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|. ..+.++++++.++++++.+|.+.+++...+ ++..+.... . .+ |.
T Consensus 59 D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~---~-vv-----r~ 111 (260)
T PTZ00431 59 DIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVEA---K-IV-----RV 111 (260)
T ss_pred CEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCCC---e-EE-----EE
Confidence 999999883 246788889988887666666655555433 333332211 1 11 23
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.|+.... +.+- ..++... ...+++..+.++.+|+.++. .+.... +.-...--+.-+--+....++..+...+.+
T Consensus 112 mPn~p~~-~g~g-~t~i~~~-~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~ta~~gsgPA~~~~~~~al~~~~v~ 185 (260)
T PTZ00431 112 MPNTPSL-VGQG-SLVFCAN-NNVDSTDKKKVIDIFSACGI--IQEIKE-KDMDIATAISGCGPAYVFLFIESLIDAGVK 185 (260)
T ss_pred CCCchhH-hcce-eEEEEeC-CCCCHHHHHHHHHHHHhCCc--EEEECh-HHcchhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3333311 1111 1233322 22356678899999999863 444421 110111111111123445566677778888
Q ss_pred hCCCHHHHHHHhcC
Q 011641 240 TGANVSQVAFAVGT 253 (480)
Q Consensus 240 ~Gid~~~v~~~~~~ 253 (480)
.|++.++..+.+..
T Consensus 186 ~Gl~~~~a~~l~~~ 199 (260)
T PTZ00431 186 NGLNRDVSKNLVLQ 199 (260)
T ss_pred cCCCHHHHHHHHHH
Confidence 99998887777653
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-10 Score=104.69 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=142.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-----------CCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-----------QLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-----------~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|.+|+|||.|.||..+|+.-+.. |++|+++|.|++.+++..++ +..-.....++++... -.+++.+
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~-l~ri~~~ 87 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT-LDRIKTS 87 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH-HHHHHHc
Confidence 35799999999999999999998 99999999999876654321 1111122244444321 1357788
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE-ecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~-- 146 (480)
++..+++.++|+||.++-. +.|++ +..+++|...+++.+++.. .|++. ...+...++....
T Consensus 88 tnv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~tNTSSl~---lt~ia~~~~~~srf~ 151 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILATNTSSLS---LTDIASATQRPSRFA 151 (298)
T ss_pred CCHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEeeccccee---HHHHHhhccChhhhc
Confidence 9999999999999998764 34555 6788999999998887752 23222 1223333333222
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| ++|.-... ...||- +++ ++++++..+..+-..+++ .++...| ...++.| .+.
T Consensus 152 GlHF---fNPvPvMK---------LvEVir-~~~--TS~eTf~~l~~f~k~~gK-ttVackD-----tpGFIVN---RlL 207 (298)
T KOG2304|consen 152 GLHF---FNPVPVMK---------LVEVIR-TDD--TSDETFNALVDFGKAVGK-TTVACKD-----TPGFIVN---RLL 207 (298)
T ss_pred eeec---cCCchhHH---------Hhhhhc-CCC--CCHHHHHHHHHHHHHhCC-CceeecC-----CCchhhh---HHH
Confidence 4444 45543221 112433 333 378999999888888864 4454433 2345677 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGTDS 255 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ 255 (480)
+-+++|..++.++..+..+++..++..+.
T Consensus 208 iPyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 208 IPYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 99999999999999999999999998664
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-09 Score=104.72 Aligned_cols=202 Identities=18% Similarity=0.149 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEeccCCC
Q 011641 11 YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT 90 (480)
Q Consensus 11 ~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~ 90 (480)
.||+.+|..|+++ |++|++++|+ ++.+.+++++..+..++.+. . . ....+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~--~--~-~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGEF--Q--F-RPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCcE--E--E-cccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999998 9999999997 77888887555443322110 0 0 02345566666 67899999999864
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEee-CCccccccccccccC
Q 011641 91 KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS-NPEFLAEGTAIQDLF 169 (480)
Q Consensus 91 ~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~~~G~a~~~~~ 169 (480)
++.++++.+.+.+.++++|+. .....|..+.+.+.+.+... -..+.+ +-.+..||...+..
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~v--~~g~~~~~~~~~~pg~v~~~~- 132 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARRI--LGGVVTHGAVREEPGVVHHAG- 132 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccCE--EEEEEEEeeEEcCCcEEEEec-
Confidence 247788999999988887764 44556666667666543210 111222 22344566544332
Q ss_pred CCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH---------------------HHHHHHH
Q 011641 170 NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------------FLAQRIS 228 (480)
Q Consensus 170 ~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (480)
..++.+|..+.. .+..+.+.++|...+. ......|+....|.|++.|+ .+.+..+
T Consensus 133 -~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 133 -LGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred -cccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 335677875421 2445667777776432 23456799999999999885 3456667
Q ss_pred HHHHHHHHHHHhCCCH
Q 011641 229 SVNAMSALCEATGANV 244 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~ 244 (480)
.++|+..++++.|+++
T Consensus 209 ~~~E~~~v~~a~G~~~ 224 (293)
T TIGR00745 209 LMDEVVRVARAEGVDL 224 (293)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 8999999999999763
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=107.27 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=84.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||..+|..++.+ |+ +|+++|++++..+... .++++++.... ...++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~~----~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVGG----FDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---HhhhhhhhccC----CCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999997 65 8999999766433211 11222222111 1246888899887 89999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++|...++ ++ ..|++.++++.++|.++.+...+|+ -|.|....-.
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di~t~ 126 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDAMTY 126 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHHHHH
Confidence 99999999976522 10 1577888999999999875443333 3567666443
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=93.69 Aligned_cols=167 Identities=20% Similarity=0.183 Sum_probs=101.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC-HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|+|+|.|.+|.++|.+|++. ||+|+.-.++ ++..+...+... ..++. .+.+++++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~-~~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITG-GSNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------ccccc-CChHHHHhcC
Confidence 89999999999999999999998 9999988554 455555444211 12333 3456778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc---c------------h-HHHHHHHHHh
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV---K------------T-AEAIEKILTH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~---g------------t-~~~l~~~l~~ 143 (480)
|+||++||.+ ++..+++++...+. ++|||+ .|+|. + + ++.+++.+..
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999853 45677788887776 787776 56661 1 1 2223333332
Q ss_pred cCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhH
Q 011641 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSA 212 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~a 212 (480)
...-.-|.-+ ....+..+.. .+ ... .+.+.++ +.++.+.+.++-+.++ ..++-.++++.+
T Consensus 125 akVVkAFn~i-~a~~l~~~~~-~~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L~~a 184 (211)
T COG2085 125 AKVVKAFNTI-PAAVLADLAK-PG-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPLENA 184 (211)
T ss_pred cchhhhhccc-CHHHhccCCC-cC-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeeccccccc
Confidence 2100112211 1122222111 11 112 2445566 5789999999999885 455666655443
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-09 Score=94.03 Aligned_cols=93 Identities=28% Similarity=0.264 Sum_probs=64.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|..|+..|.++ ||+|.++ .++++..+.+.... +.. ...++.+.++.+|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~-~~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAG-AILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------ccc-cccccccccccCC
Confidence 7999999999999999999998 9999875 67777776666421 111 2234567789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh--CCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV--SKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~--l~~~~iVi~~STv 129 (480)
++|||||.. .+.+++++|... .+++++|+.+|.-
T Consensus 71 lv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 71 LVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp EEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred EEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 999998842 578899999987 7889999988743
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-08 Score=96.13 Aligned_cols=151 Identities=11% Similarity=0.035 Sum_probs=94.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|++++++.++....... .++.. .+.+++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~-~s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEV-LTVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCee-CCHHHHHhcCCE
Confidence 6899999999999999999998 99999988875443322210 12333 377888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||.. ....++ +++.+.++++++|+..+.+..... .....+ +.++ +...|..
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~---~~~p~~---~~~V-i~vaPn~-- 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFG---QIVPPA---DVDV-IMVAPKG-- 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhc---eeccCC---CCcE-EEeCCCC--
Confidence 99999842 125566 778899999998877655443321 111111 2333 2344642
Q ss_pred cccccccc----CCCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 011641 161 EGTAIQDL----FNPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~~~~----~~~~~vv-iG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
||..+... ...+-++ +..+ .+.++.+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 33322221 1112233 2221 246788899999999874
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=92.30 Aligned_cols=208 Identities=16% Similarity=0.152 Sum_probs=134.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc----CCCCCcCCC-------hHHHHhhhcCCCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS----DQLPIYEPG-------LDGVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~----~~~~~~e~~-------l~~~~~~~~~~~l~~t~ 70 (480)
-||+|+|.|.+|..+|..||.. ||+|..||+.++.++...+ ....+.+.| .++-+ ..+..|+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eql-----a~is~t~ 76 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQL-----ALISGTT 76 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHH-----HHHhCCc
Confidence 4899999999999999999998 9999999999876543211 100001111 11111 1234578
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE-ecCCCcchHHHHHHHHHhcCCCCc
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
++.|+.+++=.|-.|+|.. +..-+...+++...+.+.+|+.. .||+.|... ..-|... .
T Consensus 77 ~l~E~vk~Ai~iQEcvpE~-------------L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~---s~gL~~k----~ 136 (313)
T KOG2305|consen 77 SLNELVKGAIHIQECVPED-------------LNLKKQLYKQLDEIADPTTILASSTSTFMPSKF---SAGLINK----E 136 (313)
T ss_pred cHHHHHhhhhhHHhhchHh-------------hHHHHHHHHHHHHhcCCceEEeccccccChHHH---hhhhhhh----h
Confidence 9999999999999999853 22336777888888877666532 245555432 1111111 1
Q ss_pred eEEeeCCccccccccccccCCC-CeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHH
Q 011641 150 FQILSNPEFLAEGTAIQDLFNP-DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
-.++.+|.. |-- +-| ..+|-. +-+++++.++.+.+++.++. .++... -|...++-| .+..|
T Consensus 137 q~lvaHPvN--PPy-----fiPLvElVPa---PwTsp~tVdrt~~lM~sigq-~pV~l~----rei~Gf~ln---riq~A 198 (313)
T KOG2305|consen 137 QCLVAHPVN--PPY-----FIPLVELVPA---PWTSPDTVDRTRALMRSIGQ-EPVTLK----REILGFALN---RIQYA 198 (313)
T ss_pred heeEecCCC--CCc-----ccchheeccC---CCCChhHHHHHHHHHHHhCC-CCcccc----cccccceec---cccHH
Confidence 245566642 111 111 123222 22368899999999999873 344332 345555556 67889
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 229 SVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+||-.+++...++++.++...++.+
T Consensus 199 ilne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 199 ILNETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHHHccCcchhhHHHHHhcC
Confidence 99999999999999999999888765
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-08 Score=94.30 Aligned_cols=190 Identities=17% Similarity=0.242 Sum_probs=123.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-----eEEEEECCH------HH-HHHHHcC-CCCCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-----EVAVVDISV------SR-INAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-----~V~~~D~~~------~~-v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
.||+|||.|+||+++|+.+..+..++ +|..|-..+ ++ .+-+|+. ++.-|-|+.+ ...++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 47999999999999999998753223 455554322 22 3334443 3444555542 2357899
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC----Ccc-hHHHHHHHHHh
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV----PVK-TAEAIEKILTH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv----~~g-t~~~l~~~l~~ 143 (480)
++|+.+++.+||+++..+|. .++..++++|..+++++...|..+.. .+| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPh---------------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPH---------------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCCh---------------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 99999999999999999984 24678999999999998877655432 233 24456777766
Q ss_pred cCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH
Q 011641 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA 221 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~ 221 (480)
.. |....++.+|....+-. .+.+- .-.+|+.+. .+.-..++++|++-. ..+....|..+.|++.-+.|.
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa--~~~f~--e~tIg~~~~---~~~~~~l~~lf~~p~-FrV~~~~D~~~VEi~GaLKNV 229 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVA--NEKFC--ETTIGYKDK---KEAGILLKKLFRTPY-FRVVVVEDADGVEICGALKNV 229 (372)
T ss_pred Hh-CCCceeecCCchHHHHH--hcccc--ceeEeccch---hhcchHHHHHhCCCc-eEEEEeccchHhHHhhhHHhH
Confidence 54 34556788887655422 12222 234687632 333345888888743 223445688888888877775
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=96.24 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=76.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||.++|..|... |++|++||++++.... .++.++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999998754211 11234578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... +...+ ..+.+.+.++++.++|+.|-...=..+.+.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998542 22222 346677888999999986654333345566777653
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=99.05 Aligned_cols=122 Identities=24% Similarity=0.275 Sum_probs=79.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..++.. |+ +|+++|+++++.+..... +.+... ......+++.++|++ ++++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~~----~~~~~~~i~~~~d~~-~~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAAP----VEGFDTKITGTNDYE-DIAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhhh----hcCCCcEEEeCCCHH-HHCCC
Confidence 79999999999999999999987 54 999999998875443211 000000 001124567778875 48999
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 80 DIVFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 80 DvVii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+||+++.+|...+.. ...-.-++..++++++.|.+..++..+|+. |.|....
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~~ 125 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDAM 125 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 9999999887644110 000012456678888888888765544443 5565543
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.8e-07 Score=83.79 Aligned_cols=248 Identities=15% Similarity=0.083 Sum_probs=146.6
Q ss_pred CcEEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh
Q 011641 1 MVKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60 (480)
Q Consensus 1 ~mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~ 60 (480)
||||+|.|.|+ -|..||..||+. ||+|++.|.|.+..+ +++.+.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~d--------------d~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMD--------------DEHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccC--------------HHHHHH
Confidence 79999999995 478899999998 999999998754321 111222
Q ss_pred hcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch-HHHHHH
Q 011641 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEK 139 (480)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~ 139 (480)
+.+.+++.++|-.++++++++.++.+| +.. .-..+++.|.++++.+.+|.+..|++|=. ...+..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFTP--FGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFTP--FGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEecc--cch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 223457888887788999999999954 431 23567899999999999998888886644 334555
Q ss_pred HHHhcCCCCceEEe-eCCccccccccccccCCCCeEEEecCCC----cchHHHHHHHHHHHhccCCCCeEEeCCchhHHH
Q 011641 140 ILTHNSKGIKFQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRET----PEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL 214 (480)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~----~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.|+-.. .++.+. ++|- ..||...++. +++|+..+ ..+++..+++.++.++.++ . .++.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~~-----yviagr~t~g~elATeEQi~r~velaes~Gk-~-~yv~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHGH-----YVIAGRSTEGKELATEEQIERCVELAESTGK-E-VYVLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCce-----EEEeccCCCceeeccHHHHHHHHHHHHhcCC-c-eEecCHHHHHH
Confidence 554321 233332 3443 4566654443 45665432 2357788899999999873 3 34433322222
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHhcCC-CCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCC
Q 011641 215 SKLAANAFLAQRISSVNAMSALCEA-TGANVSQVAFAVGTD-SRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~Gid~~~v~~~~~~~-~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~ 290 (480)
+.=+.-...+..++.+-+......+ .|+..+.+-+-+-.. ..+ .++--..|++|-.=.-|+..|...++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqTm--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 2222233344555555555555543 455544332222111 000 1121222445544445788888887776554
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=98.22 Aligned_cols=120 Identities=27% Similarity=0.408 Sum_probs=83.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+ |++|..+|..|+.. |+ +|+++|+++ +.+.++....++.+ .+.......++++++|.++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d----~~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYD----ALAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhh----chhccCCCcEEEECCCHHH-hCC
Confidence 89999997 99999999999987 55 599999954 34444444333321 1111000124666677665 999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+|+.+|...+. .+.|+ +.++++.+.|.+..+...+|+..++++..|
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 9999999998875421 13455 778888899998887666777766777665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=93.79 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=79.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|... |.+|++||++....+.... .+++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 6899999999999999999986 9999999997532221111 123444678898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-. +++..+. -++....++++.++|+.+....-..+.|.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99998842 2233332 24566778999999998877666667787777764
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=93.39 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=79.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..|..- |.+|++||++....+.... .++....+++++++.||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5899999999999999999976 9999999987432221111 123445678898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|... ++..+. -+++...++++.++|+.+....-..+.+.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999988532 223332 24577788999999998776655566677777764
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-07 Score=91.80 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=78.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||+++..... .. ..... .++++.++.||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 5899999999999999999987 9999999997543211 11 01222 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+. -++....++++.++|+.|+...-..+.+.+.|++.
T Consensus 208 V~l~lP~t~~-----------T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTKE-----------TYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCChH-----------Hhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 9999985321 12221 23566778999999999988777777788888764
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=94.99 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=78.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|++. .|.+|++||+++... ... .++.++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-~g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKG-YGSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 6899999999999999999542 288999999876432 110 12345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+.. +...+.++++.++|+.|+...-.++.+...|.+.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 21211 3456778999999999998777777777777653
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-06 Score=83.08 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=90.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. +++.+ +..++++.||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 34444444321 23333 4677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+|++|||.. .....+.+++.+.++++.+|.+...+.. ..+...+.+ +.++ +--.|.-
T Consensus 62 iVvLaVpp~--------------~~~~~v~~ei~~~l~~g~iVs~aaG~~i---~~~~~~~~~---~~~V-vrvmPn~-- 118 (314)
T TIGR00465 62 LIMNLLPDE--------------VQHEVYEAEIQPLLKEGKTLGFSHGFNI---HFVQIVPPK---DVDV-VMVAPKG-- 118 (314)
T ss_pred EEEEeCCcH--------------hHHHHHHHHHHhhCCCCcEEEEeCCccH---hhccccCCC---CCcE-EEECCCC--
Confidence 999999831 1234556778888888887765444332 222222222 1222 2345532
Q ss_pred ccccc-cc---cCCCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 011641 161 EGTAI-QD---LFNPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~-~~---~~~~~~vv-iG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
|+..+ .. -...+.++ ++.+ .+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~~~---~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVEQD---PTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 23211 00 01112232 2221 246778899999999874
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=83.21 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=74.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|++.+ +++|+++|+++++.+.+.+.... .......++..+.++++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 58999999999999999999872 37899999999988776532000 0000123455666789999
Q ss_pred EEEeccCCCC-CCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
||.|+|.+.. .+ +.. .. ...++++++|++.|++++.+ .+.+.+++.
T Consensus 85 vi~~~~~~~~~~~--------~~~---~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD--------ELP---LP----PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC--------CCC---CC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987643 10 000 00 12257899999999987665 555555543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-07 Score=90.42 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=66.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|+++++.....+.... .++.. .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 5799999999999999999998 9999999875433322221 12333 378889999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
|++++|.+.+ ..++ +.+.+.++++++++..-.
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCC
Confidence 9999996421 2233 568899999998876443
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=87.84 Aligned_cols=110 Identities=22% Similarity=0.405 Sum_probs=73.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHH----HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ | .+|.++|+++++.+. +... .++.++ ....+++++ +
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~-~ 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYA-D 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHH-H
Confidence 7999999999999999999998 6 689999999887654 3322 222111 122356665 4
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||+|++.|..... .+. +.+.+++..+.|.++.+.+.+++. |.|...
T Consensus 65 l~~aDiViita~~~~~~~~----~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tNP~d~ 121 (308)
T cd05292 65 CKGADVVVITAGANQKPGE----TRLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TNPVDV 121 (308)
T ss_pred hCCCCEEEEccCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 8999999999998865411 122 344456666777776655444443 455544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=84.90 Aligned_cols=114 Identities=23% Similarity=0.273 Sum_probs=77.4
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|+|+|.||+.+|..|++. |++|.++++++ +.+.+++....+....-++.+ .......+..+....+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETV-----QPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEE-----EEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEecccceec-----ccccccCcchhccCCCcEEE
Confidence 79999999999999999997 99999999988 888888654433322211000 00122233323468899999
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHH
Q 011641 84 VSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l 141 (480)
+||++. + ++++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~------------~---~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY------------Q---LEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG------------G---HHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc------------c---hHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 998853 2 46788889999998866543 345566666666555
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.9e-07 Score=87.24 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=54.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. +....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987511355 557999999888765421 134567888877899
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+|++|+|
T Consensus 63 DvVvi~a~ 70 (265)
T PRK13304 63 DLVVECAS 70 (265)
T ss_pred CEEEEcCC
Confidence 99999976
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=76.71 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=75.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|.++|..|..+..+.++.++|+++++.+..... ++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D--------l~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD--------LSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH--------HHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh--------hhhhhhh-ccccccccccccccccccc
Confidence 89999999 999999999999875557899999998876654421 1111111 1112334344455699999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+|+++...|..... ++ ..+...+++..+.|.++.+.+ +++. -|.|.....
T Consensus 72 ivvitag~~~~~g~---sR~~ll~~N~~i~~~~~~~i~~~~p~~-~viv-vtNPvd~~t 125 (141)
T PF00056_consen 72 IVVITAGVPRKPGM---SRLDLLEANAKIVKEIAKKIAKYAPDA-IVIV-VTNPVDVMT 125 (141)
T ss_dssp EEEETTSTSSSTTS---SHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHHHH
T ss_pred EEEEeccccccccc---cHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEE-eCCcHHHHH
Confidence 99999887754311 11 112344555666677776444 4433 266766433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8e-07 Score=88.62 Aligned_cols=104 Identities=10% Similarity=0.122 Sum_probs=76.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....+++++++.||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 5799999999999999977765 9999999986321 11 0 0112468888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+. -++....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999985321 12221 24556678999999999988777778888888764
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=87.55 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|+||..+|..++.+ |. +|+++|+++++.+...- .+.+.... ....+++.++|.++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999987 65 99999999875433221 01111110 01235677778654 899999
Q ss_pred EEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+|+.+|...+.. +....-++..++++++.|.+..+++.+|+. |.|...
T Consensus 70 VIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~--sNP~di 120 (300)
T cd01339 70 VVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV--TNPLDV 120 (300)
T ss_pred EEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 99999888654210 000012566677888888888865554443 355443
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=86.01 Aligned_cols=114 Identities=12% Similarity=0.149 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||||||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 78999999999999999998632478876 7899999877765421 11234567788778899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEE
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQI 152 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+|++|+|+.. ..+..... ++.++-|+..|+......+++.+..++.+ ..+++
T Consensus 70 ~Vvi~tp~~~---------------h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 70 IVVEAAPASV---------------LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred EEEECCCcHH---------------HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 9999987532 12333332 34455455555433334455655555543 34444
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-05 Score=70.58 Aligned_cols=191 Identities=14% Similarity=0.145 Sum_probs=111.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||. |.||..++..|.+. |+.|+ +.+||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999988 88874 13689
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.+.++++. .+|++-+++... +. +... + ++..+|-+.
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~~----i~---~~~~---~-~vg~HPMfG- 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKWP----FK---KYSG---K-IVSIHPLFG- 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCHH----HH---HhcC---C-EEecCCCCC-
Confidence 999998832 2334444432 356665544321 22 1111 2 477888764
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|..+..+++. .+++-+. ..+++..+.++++++ + ..+..++++. ++-.+|++.-+..+....
T Consensus 81 p~~a~~~lf~--~~iv~~~--~~~~~~~~~~~~l~~--G--~~~~~~t~ee-----------HD~~~A~ishLpH~ia~a 141 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIND--ISRDNYLNEINEMFR--G--YHFVEMTADE-----------HDLLMSEIMVKPYIISMI 141 (197)
T ss_pred CCcCcccccc--eEEEECC--CCCHHHHHHHHHHHc--C--CEEEEeCHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 5555555542 3333222 235677888899988 2 3566667654 233344444443332111
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHC-CCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN-GLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
-.+. . ..+ .++|| +.++++|+.. +.+ ..+|......|.+- ..++++++.++
T Consensus 142 l~~~---------~----~~~--~t~~f---------r~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~~ 193 (197)
T PRK06444 142 LKDI---------K----SDI--KTGSF---------DKLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERLN 193 (197)
T ss_pred HccC---------C----CCC--CCccH---------HHHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHHh
Confidence 1110 0 012 12222 3455566553 333 68999999999886 66777777664
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=75.51 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 6899999999999999999998 9999999999998887764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.7e-06 Score=83.76 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++||||+|.+|..+|..+..- |.+|++||+ .+...+.. .......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~---------------------~~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGV---------------------DGVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhcc---------------------ccceecccHHHHHhhCC
Confidence 5799999999999999999987 999999999 33322111 01233467888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC---CCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|.+.+|-.. ++..+.. .+....++++.++|+.+=.+.=..+.|.+.|++... +.|+ |.+|
T Consensus 200 iv~lh~PlT~-----------eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV---f~~E 263 (324)
T COG0111 200 ILTLHLPLTP-----------ETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV---FEEE 263 (324)
T ss_pred EEEEcCCCCc-----------chhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC---CCCC
Confidence 9999987432 2232322 234456889999998765444444567777766422 2332 5566
Q ss_pred cccccccccccCCCCeEE
Q 011641 158 FLAEGTAIQDLFNPDRVL 175 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv 175 (480)
-..+++ .++..++|+
T Consensus 264 Pl~~~~---pL~~~pnV~ 278 (324)
T COG0111 264 PLPADS---PLWDLPNVI 278 (324)
T ss_pred CCCCCC---hhhcCCCeE
Confidence 554443 334444554
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-06 Score=71.66 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=55.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
|||+|||+|.+|......+.+..+++++. ++|+++++.+.+.+. -++...+|.++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 69999999999999998888764567765 789999988876542 13457788888776 7
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 63 ~D~V~I~tp~~ 73 (120)
T PF01408_consen 63 VDAVIIATPPS 73 (120)
T ss_dssp ESEEEEESSGG
T ss_pred CCEEEEecCCc
Confidence 89999998764
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-06 Score=88.32 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=77.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+....- .... ...... ++++.++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~-~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISPE-RAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCChh-HHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 5799999999999999999987 99999999853211 1111 113333 68888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+. -+.....++++.++|+.|..+.=..+.+.+.|++.
T Consensus 198 V~l~lP~t~~t-----------~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPET-----------RGLI--GAEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChHh-----------hcCc--CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 99999854221 1121 14566778999999998877666667787777764
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-06 Score=83.41 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=74.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|++|.++|..++.+ | .+++++|+++++++.+... +++........++..+++.+ .+++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCE
Confidence 68999999999999999987 6 6899999999988777653 11111110112345556665 5999999
Q ss_pred EEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+|..+|..... + +. ....+++..+.|.++.+ +.+|++- |.|.....
T Consensus 70 VIitag~p~~~~~---~-R~~l~~~n~~i~~~~~~~i~~~~p-~~~viv~-sNP~d~~~ 122 (300)
T cd00300 70 VVITAGAPRKPGE---T-RLDLINRNAPILRSVITNLKKYGP-DAIILVV-SNPVDILT 122 (300)
T ss_pred EEEcCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEc-cChHHHHH
Confidence 9999998865421 1 12 22334556666666664 4444432 45655433
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-06 Score=75.51 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=71.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||++......... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 5899999999999999999986 9999999998876542221 1233 3588888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..| +.....++++.++|+.+-...=..+.+.+.|++.
T Consensus 95 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTTT-----SBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccce-----eee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 9999984221111 222 3445678899999975533222234477777663
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.8e-06 Score=87.87 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=77.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+.... +.... ......+++++.++.||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 5799999999999999999876 9999999984211 11111 123444678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+.. +.....++++.++|+.|..+.=..+.|.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985321 112221 3445578999999998887666667787778764
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=73.54 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------CC-Cc--cCCCCccccchhHhHHH
Q 011641 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG-------PK-FL--NASVGFGGSCFQKDILN 279 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~-------~~-~~--~pg~g~gG~cl~kD~~~ 279 (480)
+++..+|+++|.+...++..+.|...++++.|+|+++++++++..+.-+ ++ ++ .+.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 3678999999999999999999999999999999999999999765211 11 11 35577999999999999
Q ss_pred HHHHHHHCCCChhhHHHHHHH
Q 011641 280 LVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~ 300 (480)
..+.+++.|+| .++.+.+.
T Consensus 81 ~~~~a~~~g~~--~p~~~~~~ 99 (122)
T PF14833_consen 81 ALDLAKEAGVP--LPLGSAAR 99 (122)
T ss_dssp HHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHH
Confidence 99999999998 56555543
|
... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=80.88 Aligned_cols=116 Identities=22% Similarity=0.257 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-EecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.+ | ++|+++|+++++.+.+... +.+.... ...... .+.+.+ .+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~--g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~-~~~~~~i~~~~~~-~l~~ 68 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ--GIADELVLIDINEEKAEGEALD--------LEDALAF-LPSPVKIKAGDYS-DCKD 68 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHhHhh--------HHHHhhc-cCCCeEEEcCCHH-HhCC
Confidence 5899999999999999999988 6 6899999999887766532 1111110 011122 235555 4899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+||+|++.|..... + +. +...+++..+.|.++.+ +.+|++- |.|..+.-
T Consensus 69 aDIVIitag~~~~~g~---~-R~dll~~N~~i~~~~~~~i~~~~~-~~~vivv-sNP~d~~~ 124 (306)
T cd05291 69 ADIVVITAGAPQKPGE---T-RLDLLEKNAKIMKSIVPKIKASGF-DGIFLVA-SNPVDVIT 124 (306)
T ss_pred CCEEEEccCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-cChHHHHH
Confidence 9999999988754311 1 11 22334555566666655 4444432 46665543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=78.33 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=112.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH-hhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~aD 80 (480)
.+|||||.|.||.-+|..|.++ ||.|++.||+. -+.+.+.. |. ...+++.+ .-+..|
T Consensus 53 l~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y-----------------g~-~~ft~lhdlcerhpD 110 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY-----------------GS-AKFTLLHDLCERHPD 110 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh-----------------cc-cccccHHHHHhcCCC
Confidence 3699999999999999999999 99999999975 33333210 11 11233333 236899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce---EEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF---QILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~---~v~~~P 156 (480)
+|++|+.. ..++.+++...+. ++.+++++...++.-=..+.+.+.|.+.. |+ +-.++|
T Consensus 111 vvLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdf---DIlctHpmfGP 172 (480)
T KOG2380|consen 111 VVLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDF---DILCTHPMFGP 172 (480)
T ss_pred EEEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcccc---ceEeecCCcCC
Confidence 99999652 2356666666665 78899998765553222233555665532 32 223455
Q ss_pred cccccccccccc-CCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDL-FNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~-~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
+...++- .++ +-..++-+|- ....++.+|.+.++|...+. ....++.+ |--|++..++.-++.++..--..
T Consensus 173 ksvnh~w--qglpfVydkvRig~--~~~r~ercE~fleIf~cegc--kmVemS~e--eHDkiaAdsQfVTHtagr~lg~a 244 (480)
T KOG2380|consen 173 KSVNHEW--QGLPFVYDKVRIGY--AASRPERCEFFLEIFACEGC--KMVEMSYE--EHDKIAADSQFVTHTAGRSLGSA 244 (480)
T ss_pred CcCCCcc--ccCceEEEEeeccc--cccchHHHHHHHHHHHhcCC--eEEEEEee--cccccccchhHHHHHHHHHHHHh
Confidence 5333221 111 0111222342 12236789999999998753 33333332 45667766666666666543333
Q ss_pred HHHHhCC
Q 011641 236 LCEATGA 242 (480)
Q Consensus 236 l~~~~Gi 242 (480)
.++..-+
T Consensus 245 w~~syPi 251 (480)
T KOG2380|consen 245 WAKSYPI 251 (480)
T ss_pred hhhhCce
Confidence 3334333
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=85.33 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=73.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||++++... +.+ ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 5899999999999999999987 999999998653211 110 01112467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.. +++..+. -+.....++++.++|+.+=.+.=..+.|.+.|++.
T Consensus 194 vv~~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNT-----------PETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCC-----------HHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 99999843 2223222 24566778999999986543322345576777654
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.7e-06 Score=82.45 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=73.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..|+..+...++.++|+++++.+..... +...........++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999998773345899999998765543321 000000000124666688886 899999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||++...|..... ++ .-+...+++..+.|.++.+ +.++++- |.|...
T Consensus 75 vvitaG~~~k~g~---~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivv-sNP~d~ 125 (312)
T cd05293 75 VIVTAGARQNEGE---SRLDLVQRNVDIFKGIIPKLVKYSP-NAILLVV-SNPVDI 125 (312)
T ss_pred EEECCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEc-cChHHH
Confidence 9999887654311 11 1122335556667777754 4444432 456554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=83.19 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=70.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..|... |.+|+++++++++.+.+.+.... .+. ..++.+.++++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~~----------------~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGLI----------------PFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCCe----------------eec-HHHHHHHhccCCE
Confidence 4799999999999999999987 89999999999876655431100 011 1345566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|+|.+.- -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 9999875321 1234456788999999998886663
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.3e-06 Score=85.77 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred cEEEEECCChhHHHHHH--HHHH--cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||+|.||.+++. .++. ..+|++|++||+++++++.+.... ...+... ...+++.++|+++++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~--------~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILA--------KKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--------HHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999999776 3431 123889999999999888765421 1111111 123578899999999
Q ss_pred ccCcEEEEeccCCC
Q 011641 77 SEADIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||++++...
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998653
|
linked to 3D####ucture |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-05 Score=74.01 Aligned_cols=176 Identities=14% Similarity=0.134 Sum_probs=103.6
Q ss_pred CCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHH
Q 011641 26 SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY 105 (480)
Q Consensus 26 G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~ 105 (480)
.++|++++|++++.+.+.+. -+.+.+++..++++++|+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 024556777777889999999998 52 3
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchH
Q 011641 106 WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQ 185 (480)
Q Consensus 106 v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~ 185 (480)
+.++++++.+.+.++++|| |....=+.+.+.+.+.... . + .|..|..+..-.... ..+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~iv--S~~agi~~~~l~~~~~~~~---~--i----vR~mPn~~~~~~~g~-t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLI--SIAAGVTLEKLSQLLGGTR---R--V----VRVMPNTPAKVGAGV-TAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEE--EecCCCCHHHHHHHcCCCC---e--E----EEECCChHHHHhCCe-EEEecCC--CCCH
Confidence 6778888887776677666 3333333455655553211 1 1 233332221111111 2222222 2245
Q ss_pred HHHHHHHHHHhccCCCCeEEeC--CchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 186 KAVKALKDVYAHWVPEDRILTT--NLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 186 ~~~e~~~~l~~~~~~~~~v~~~--~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+..+.++.+|+.++. .+... ....+-.+-=... +....++..+...+.+.|++.++..+++..
T Consensus 122 ~~~~~v~~lf~~~G~--~~~v~E~~~~~~talsgsgP---A~~~~~~~al~~~~v~~Gl~~~~A~~lv~~ 186 (245)
T TIGR00112 122 EDRALVLALFKAVGE--VVELPEALMDAVTALSGSGP---AYVFLFIEALADAGVKQGLPRELALELAAQ 186 (245)
T ss_pred HHHHHHHHHHHhCCC--EEEECHHHcchHHhhccCcH---HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 677899999999863 44442 1111111111222 344556667777888899998888877763
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.5e-06 Score=82.09 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..++.. |+ +|+++|+++++...-.-.... ..... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld~~~--------~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALDISH--------SNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHHHHh--------hhhccCCCeEEEECCCHH-HhCCC
Confidence 6899999999999999999987 74 899999999864321100000 00000 012466678885 58999
Q ss_pred cEEEEeccCCCCCCCC----CC--CCCCChHHHHHHHHHHHhhCCCCcEE
Q 011641 80 DIVFVSVNTPTKTQGL----GA--GKAADLTYWESAARVIADVSKSDKIV 123 (480)
Q Consensus 80 DvVii~Vptp~~~~~~----~~--~~~~d~~~v~~~~~~i~~~l~~~~iV 123 (480)
|+||++...|.....+ .+ .-..+...+.+.++.|.+..++..++
T Consensus 76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~i 125 (321)
T PTZ00082 76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVI 125 (321)
T ss_pred CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999998765432000 00 00113444566667777777544333
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-05 Score=82.73 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=57.4
Q ss_pred CcEEEEECCChhHHHHHH--HHH--HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMA--VIA--LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~--~La--~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++.+....- +...+... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 789999999999977766 554 223467999999999887743220 11111111 12357889998888
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998765
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=71.21 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=60.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|..|.+.|.+|.+. |.+|++-.+..+ ..+..++. +++. .+.+|+++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~~-------------------Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKAD-------------------GFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHHT-------------------T-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHHC-------------------CCee-ccHHHHHhhCC
Confidence 5899999999999999999998 999998887655 34333331 2333 46788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|++.+|.. ...++. ++|.++|+++++++...
T Consensus 63 vV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 999998732 123454 88999999999887643
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.4e-05 Score=79.72 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=72.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||++.........+ +.......+... . .. ..+++++++.||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~~---~-~~-~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL---IPNGDVDDLVDE---K-GG-HEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc---cccccccccccc---c-Cc-ccCHHHHHhhCCE
Confidence 5899999999999999999876 99999999973321110000 000000010000 0 11 2478888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... +..+. -+.....++++.++|+.+-.+.=..+.|.+.|++.
T Consensus 230 Vvl~lPlt~~-----------T~~li--~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIV--NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhccc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884321 11121 14455678899999986543322344566667653
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=76.92 Aligned_cols=122 Identities=21% Similarity=0.250 Sum_probs=78.0
Q ss_pred EEEECC-ChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 4 ICCIGA-GYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|||+ |.||..+|..|+..+ ...+|+++|+++++++..... +++........++++++|+.+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCCCC
Confidence 689999 999999999999872 127999999998776654431 111111110235778888778899999
Q ss_pred EEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~--~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++...|..... ++ ...-+...+++..+.+.++.+ +.++++- |.|.+....
T Consensus 73 iVv~t~~~~~~~g~-~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~-tNP~d~~t~ 127 (263)
T cd00650 73 VVIITAGVGRKPGM-GRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVV-SNPVDIITY 127 (263)
T ss_pred EEEECCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHHHH
Confidence 99998765543210 00 001133446667777777774 5555443 577766444
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-06 Score=80.89 Aligned_cols=73 Identities=27% Similarity=0.366 Sum_probs=57.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.| .||.|||.+|.++ |+.|++|++.. .++++.++.||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~t---------------------------------~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSRS---------------------------------TDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCCC---------------------------------CCHHHHHhcCC
Confidence 479999996 9999999999998 99999997631 24667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +.. ..+++|++||+.|+.
T Consensus 205 IVIsavg~~~~--------------v~~------~~ik~GaiVIDvgin 233 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDA------DWLKPGAVVIDVGIN 233 (301)
T ss_pred EEEEecCChhc--------------ccH------hhccCCcEEEEeccc
Confidence 99999987632 111 127889999987654
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=82.45 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=74.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+..... .+ ... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~~-------------------~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----EG-------------------DGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----cc-------------------Ccc-ccCHHHHHhhCCE
Confidence 5799999999999999999987 99999999753211 00 111 2467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... + ...+..+. -+.....+++++++|+.|..+.=..+.+.+.|++.
T Consensus 171 V~lh~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKE--G-----EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCC--c-----cccccccC--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999884211 0 01111221 13455678999999998877666666777777653
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.5e-05 Score=80.18 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=75.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999985321 00 123344578899999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|-.. ++..+. -+.....++++.++|+.|-.+.=..+.|.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMI--GAEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999988421 222222 13455678899999987766555566677777653
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=79.95 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=71.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..+|..++.. | .++.++|+++++.+...-...... ... -...+++.++|++ ++++||
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl~~~~-----~~~--~~~~~i~~~~d~~-~l~~AD 75 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDLKHFS-----TLV--GSNINILGTNNYE-DIKDSD 75 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHHhhhc-----ccc--CCCeEEEeCCCHH-HhCCCC
Confidence 6999999999999999999987 6 689999999876543221000000 000 0012456667887 689999
Q ss_pred EEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||++...|..... .+. ....+++..+.+.++.++..+|+. |.|...
T Consensus 76 iVVitag~~~~~g~----~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv--sNP~di 127 (319)
T PTZ00117 76 VVVITAGVQRKEEM----TREDLLTINGKIMKSVAESVKKYCPNAFVICV--TNPLDC 127 (319)
T ss_pred EEEECCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cChHHH
Confidence 99999865432200 011 123456677777777654434443 455544
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-05 Score=76.24 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=69.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+..... + ..+.. .++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~-----------~------------~~~~~-~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK-----------N------------EEYER-VSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc-----------c------------cCcee-ecHHHHhhcCCE
Confidence 4799999999999999988765 89999999853210 0 01222 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|++++|-.... ..+. -+.....++++.++|+.|=.+.=..+.|.+.|++
T Consensus 200 v~lh~Plt~~T-----------~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEKT-----------KNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCchh-----------hccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 99998843211 1111 1334567889999998654333234557677765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=77.56 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=69.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|++|||.|.+|..++..|... |.+|+++|+++++.+...+-.. ......++.+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 5899999999999999999988 8999999999887666543210 01111345566789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|.+. ..+.....++++.+|++.++.+.|+
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987421 1234556678899999888777664
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-05 Score=75.87 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=70.9
Q ss_pred cEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++||||+|.+|..+|..+. .- |.+|.+||+....-.. .. .+.+. .++++.++.||
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f--gm~V~~~~~~~~~~~~-~~-------------------~~~~~-~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF--NMPILYNARRHHKEAE-ER-------------------FNARY-CDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC--CCEEEEECCCCchhhH-Hh-------------------cCcEe-cCHHHHHHhCC
Confidence 57999999999999999986 43 8899999986321100 00 01233 37888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++|-.. ++..+. -+.....++++.++|+.+=.+.=..+.|.+.|++.
T Consensus 203 vv~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 203 FVCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999988432 222222 13455678899999986543333345577777654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-05 Score=76.46 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=71.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC---CCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhcc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD---QLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
||+|||+|.+|.++|..|+.+.-.-++.++|+++++.+..... ..++. ...+.+. +.+++ .+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-----------~~~~~~i~~~~y~-~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-----------YSTNTKIRAGDYD-DCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-----------CCCCEEEEECCHH-HhCC
Confidence 7999999999999999998772224899999998765443321 01110 0012222 45665 4999
Q ss_pred CcEEEEeccCCCCCCCCCCCC-CC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGK-AA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~-~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+||++...|..... ++ +. +.+.+++..+.+.++.+ +.+++. -|.|..+...+
T Consensus 69 aDivvitaG~~~kpg~---tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~iv-vsNPvDv~t~~ 128 (307)
T cd05290 69 ADIIVITAGPSIDPGN---TDDRLDLAQTNAKIIREIMGNITKVTK-EAVIIL-ITNPLDIAVYI 128 (307)
T ss_pred CCEEEECCCCCCCCCC---CchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ecCcHHHHHHH
Confidence 9999999887654311 11 12 23445555566666664 444333 46676664443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.9e-05 Score=74.58 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=73.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|..+..- |.+|..||+.+. -+.-.. .+.++.. +++.++.||+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F--gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF--GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 5899999999999999999943 899999999764 111111 1234544 7888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+.+|-. ++..++.. +.....++++.++|+.+=.+.=..+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99998742 23333322 3455678899999986543333345577777664
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.2e-05 Score=77.10 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=73.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..++......++.++|+++++.+..... +...........++.++++++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998763234899999998766544321 111100000113444467776 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||++...|..... + +.| ...+++..+.|.++.+++ ++++- |.|..+...
T Consensus 109 VVitAG~~~k~g~---t-R~dll~~N~~I~~~i~~~I~~~~p~~-ivivv-tNPvdv~t~ 162 (350)
T PLN02602 109 CIVTAGARQIPGE---S-RLNLLQRNVALFRKIIPELAKYSPDT-ILLIV-SNPVDVLTY 162 (350)
T ss_pred EEECCCCCCCcCC---C-HHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEe-cCchHHHHH
Confidence 9999877654310 1 222 233455666666665544 44332 466655433
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.6e-05 Score=74.65 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=69.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.. |. ++.++|+++++++...... ..... .. .+.+. +++++ .+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl--------~~~~~-~~-~~~~i~~~~~~-~~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDL--------SHAVP-FT-SPTKIYAGDYS-DCKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHH--------Hhhcc-cc-CCeEEEeCCHH-HhCC
Confidence 5899999999999999999987 55 8999999988765544311 00000 00 12222 35555 4999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+||++...|..... + +. +...+++..+.+.++.+. .++++- |.|..+.
T Consensus 74 adivIitag~~~k~g~---~-R~dll~~N~~i~~~i~~~i~~~~~~-~~vivv-sNP~d~~ 128 (315)
T PRK00066 74 ADLVVITAGAPQKPGE---T-RLDLVEKNLKIFKSIVGEVMASGFD-GIFLVA-SNPVDIL 128 (315)
T ss_pred CCEEEEecCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc-cCcHHHH
Confidence 9999999887654311 1 11 223345555566655554 444332 4565543
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.97 E-value=4e-05 Score=77.48 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=70.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..|....+..+|.+||+++++.+.+.+.. ++ ..-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~-~g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SD-YEVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-hCCcEEEeCCHHHHhccCCE
Confidence 479999999999998877765434679999999999988776421 00 00125667899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. . ..+ ...+++|+.|...++..|+.
T Consensus 196 VitaT~s~~-P-------~~~-----------~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 196 LVTTTPSRK-P-------VVK-----------ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred EEEecCCCC-c-------Eec-----------HHHcCCCCEEEecCCCCccc
Confidence 999987531 1 011 23568898886555544544
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.4e-05 Score=73.79 Aligned_cols=121 Identities=24% Similarity=0.313 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..|+....+.++.++|+++++.+..... +.....-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D--------L~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD--------LSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc--------hhhcchhccCceEEecCCChhh-hcCCC
Confidence 79999999999999999998765566999999995544322211 10000000 0122333234554 99999
Q ss_pred EEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+|+++-.-|..+.. .+. +.+-+++..++|.+..+...++| -|.|..+.-.+
T Consensus 72 iVvitAG~prKpGm----tR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ty~ 127 (313)
T COG0039 72 IVVITAGVPRKPGM----TRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDILTYI 127 (313)
T ss_pred EEEEeCCCCCCCCC----CHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHHHHH
Confidence 99999977764411 122 33445556666666666333333 47787765443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5e-05 Score=77.81 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=70.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+..- |.+|++||+.... .+ .... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 5899999999999999999987 9999999964210 00 0011 2467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... + ...+..+. -+.....+++++++|+.|=.+.=..+.+.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999873221 1 01111111 13455678899999986644433345566777653
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-05 Score=75.75 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=75.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE--ecCHHHhh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
||||.|||+|.+|.+.|..|+++ | .+|++.||+.++++++.... ..+. - -.+.+ ...+.+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~~v~-----~-------~~vD~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGGKVE-----A-------LQVDAADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhccccce-----e-------EEecccChHHHHHHH
Confidence 79999999999999999999998 6 89999999999999886531 1110 0 00111 12345668
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHH----------------HHhhC-CCCcEEEEecCCCcchHHHHHH
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARV----------------IADVS-KSDKIVVEKSTVPVKTAEAIEK 139 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------------i~~~l-~~~~iVi~~STv~~gt~~~l~~ 139 (480)
++.|+||.|.|-+. +.+.++++++. +.+.. +.+..++....+.||.+.-+..
T Consensus 67 ~~~d~VIn~~p~~~-----------~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~ 135 (389)
T COG1748 67 KDFDLVINAAPPFV-----------DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAA 135 (389)
T ss_pred hcCCEEEEeCCchh-----------hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHH
Confidence 88999999998543 23333333321 11111 2355667777788887766543
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.6e-05 Score=76.03 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=56.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..++..+....+..+|++|+|++++.+.+.+.. .+ ....+....++++++++||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999986665323689999999999988876521 00 00135667888888999999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|++++
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98886643
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=62.85 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=47.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. +++++. ++|++++... | ..+.++... ....+.+++|+++.++.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~----g------~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV----G------KDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT----T------SBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc----c------chhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999984 488855 5787652100 1 111111110 112467789999988899
Q ss_pred cEEEEec
Q 011641 80 DIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|++|-+.
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00038 Score=71.75 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=72.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|||||+|.+|..+|..+++.+ |.+|++||+.... .+...... ....+.+.. ....+...++++.++.|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMEEVLREA 237 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccc-------cccccccCCHHHHHhhC
Confidence 57999999999999999986432 8999999987532 11110000 000000000 00123345889999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|+|++++|-.. ++..+. -+.....++++.++|+.+-.+.=....+.+.|++
T Consensus 238 DiV~lh~Plt~-----------~T~~li--n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 238 DVISLHPVLDK-----------TTYHLI--NKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CEEEEeCCCCh-----------hhhhhc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999987421 122222 1345567899999998653322223446666665
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00015 Score=72.96 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.... .. ... ..++++.++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 5799999999999999988765 8999999874310 00 001 1367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... +..+. -+.....++++.++|+.+=...=..+.|.+.|++.
T Consensus 201 v~l~~Plt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTET-----------TQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCChH-----------Hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884221 11111 13445668899999986543333345577777653
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.5e-05 Score=75.42 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=55.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEE-CCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|+||| .|.||.+||.+|.++ |+.|++|+ +++ +++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT~----------------------------------~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRTR----------------------------------DLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCCC----------------------------------CHHHHHhcC
Confidence 4799999 999999999999998 99999995 321 345668899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|++.|.. +.. ..+++|++||+.++
T Consensus 203 DIVIsavg~~~~--------------v~~------~~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKG------DWIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cch------heecCCCEEEEcCC
Confidence 999999987531 121 12788999998654
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.8e-05 Score=72.12 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=49.5
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|+|+ |.||..++..+.+. +++++.+ +|+++++.... . . ..+..++|+++.+++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~--~-----~------------~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ--G-----A------------LGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc--C-----C------------CCccccCCHHHhccC
Confidence 689999998 99999999888764 4777665 88887654322 0 0 124456788887778
Q ss_pred CcEEEEecc
Q 011641 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998864
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.8e-05 Score=74.20 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=53.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|...+ +++|+++|+++++.+.+.+... ......++..+++.++|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG----------------GNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC----------------CeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998752 4789999999998877664210 011111345566789999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=71.66 Aligned_cols=102 Identities=9% Similarity=0.117 Sum_probs=68.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+... .. ... ..++++.++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 4799999999999999998765 899999998521 00 001 1367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-... +..+. -+.....++++.++|+.+=.+.=..+.|.+.|++.
T Consensus 201 v~l~lPlt~~-----------T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTEH-----------TRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCChH-----------HhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884221 11111 13445678899999986543332345577777653
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=73.01 Aligned_cols=118 Identities=16% Similarity=0.240 Sum_probs=69.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+ |.+|.++|..|+.. |. ++.++|++++. ++..... +........ .+.+++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~~~~-~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAME--------LEDCAFPLL-AEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeehh--------hhhcccccc-CceEEecC
Confidence 69999999 99999999999876 44 79999995432 2221110 000000000 12344444
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
..+.+++||+||++-..|..... + +. +.+.+++..+.|.++.+++.+++.- |.|.....
T Consensus 72 ~~~~~~daDivvitaG~~~k~g~---t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t 135 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPGM---E-RADLLKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTNA 135 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCCC---c-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHHH
Confidence 44569999999999887654311 1 12 2344566667777777545555443 46655543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=70.71 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=71.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|++++|++++.+.+.+.... .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~~--------------~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQR--------------YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhh--------------cCceEEechhhhcccCccE
Confidence 4799999999999999999998 89999999999988776642100 0112222211122457999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
||-|+|.....+ .+-..+ -...++++.+|++.++.|+.| .+.+..++
T Consensus 182 vInatp~gm~~~-------~~~~~~------~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 182 IINATSAGMSGN-------IDEPPV------PAEKLKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred EEECCCCCCCCC-------CCCCCC------CHHHcCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 999987642210 100000 013467788999999998877 24444444
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=70.85 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=47.8
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EECC-HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~-~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|+| +|.||..++..+... +++++.+ +|++ ++...+ ...++.. .....+.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 78999999 699999999999875 5888665 7743 322100 0000000 00013567788887545
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
.+|+||.|++
T Consensus 68 ~~DvVIdfT~ 77 (266)
T TIGR00036 68 DPDVLIDFTT 77 (266)
T ss_pred CCCEEEECCC
Confidence 6899999975
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0031 Score=63.91 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=137.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHH----HHHcCCCCCcCCChHHHHhhhcCCCEE---EecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~----~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.+|-|+|+|.++.-+|..|.+++ .+.|=.+.|...+-+ .++++...+. .+.+.-......|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~-v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFE-VSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEE-EeecchhhhhhcCeEEhhHhhcCHH
Confidence 678999999999999999999873 346878888665544 4444221111 1110000011234443 345677
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CC-CCcEEEEecCCCcchHHHHHHHHHhcCCCC---
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SK-SDKIVVEKSTVPVKTAEAIEKILTHNSKGI--- 148 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~-~~~iVi~~STv~~gt~~~l~~~l~~~~~g~--- 148 (480)
++..+=|.+|+|||+. +-.+++++|... |+ -.++|.+++|+. +..-++..+.+.+...
T Consensus 79 ~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvSPtfG--S~~lv~~~l~~~~~~~EVI 141 (429)
T PF10100_consen 79 EIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVSPTFG--SHLLVKGFLNDLGPDAEVI 141 (429)
T ss_pred HhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEECcccc--hHHHHHHHHHhcCCCceEE
Confidence 7667889999998863 235666766432 22 256777777774 3344555666544211
Q ss_pred ceEEeeCCcccccc----ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHh---------
Q 011641 149 KFQILSNPEFLAEG----TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS--------- 215 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~--------- 215 (480)
.|.--++-.+...+ +++.... -.++.+|+... +.....++..+++.++. ......++-.||.-
T Consensus 142 SFStY~gdTr~~d~~~~~~vlt~~v-K~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVHpp 217 (429)
T PF10100_consen 142 SFSTYYGDTRWSDGEQPNRVLTTAV-KKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVHPP 217 (429)
T ss_pred EeecccccceeccCCCcceehhhhh-hceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecCCh
Confidence 12111222222111 1111111 23688887643 34568889999998853 23444567777742
Q ss_pred ----hhh-----------------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 216 ----KLA-----------------------ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 216 ----Kl~-----------------------~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++. .-....-+...+.|++.+..++|++.-.+++.++.|
T Consensus 218 lfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 218 LFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred HhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 111 122445667889999999999999999999999976
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00035 Score=70.39 Aligned_cols=119 Identities=20% Similarity=0.232 Sum_probs=71.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
.||+|||+ |.+|.++|..|... +. ++.++|+++ ++++..........-+ ...+.+++++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~---------~~~~~~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP---------LLAGVVATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHHHhhcccc---------ccCCcEEecC
Confidence 58999998 99999999999876 43 899999964 2232222110000000 0012334344
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
..+.+++||+||++-..|..... + +.| .+.+++..++|.++.+++.+++.- |.|....-.
T Consensus 73 ~~~~~~daDvVVitAG~~~k~g~---t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 137 (323)
T TIGR01759 73 PEEAFKDVDAALLVGAFPRKPGM---E-RADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNAL 137 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCCCC---c-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 34559999999999887654311 1 222 344666777777777645555443 467665443
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=70.81 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=45.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+. ++.++.++ +++. ..+...+. + .....+++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~~-~~~~~~~~------------~----~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPEH-SIDAVRRA------------L----GEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcCC-CHHHHhhh------------h----ccCCeeeCCHHHhccCC
Confidence 79999999999999999999874 45665543 3321 11111110 0 01246677887753568
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|.|+
T Consensus 63 DvVve~t~~ 71 (265)
T PRK13303 63 DLVVECAGH 71 (265)
T ss_pred CEEEECCCH
Confidence 999999764
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0002 Score=65.85 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=74.7
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
...+.+++|+|+|+. +-+..+++.|..-|++|.+|||...+.......
T Consensus 31 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~---------------------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGYG----------RIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF---------------------- 78 (178)
T ss_dssp BS-STTSEEEEESTS----------HHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------------
T ss_pred ccccCCCEEEEEEEc----------CCcCeEeeeeecCCceeEEecccCChhhhcccc----------------------
Confidence 457899999999974 578999999999999999999999876522221
Q ss_pred ceEEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+ ...++++.++.+|+|++..+- ++-++ ++- +..+.|++.+++|++-+ ++|.+.+-
T Consensus 79 ~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~-~~l~~mk~ga~lvN~aRG~~vde~aL~ 138 (178)
T PF02826_consen 79 GV-EYVSLDELLAQADIVSLHLPLTPETRGLINA-EFLAKMKPGAVLVNVARGELVDEDALL 138 (178)
T ss_dssp TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH-HHHHTSTTTEEEEESSSGGGB-HHHHH
T ss_pred cc-eeeehhhhcchhhhhhhhhccccccceeeee-eeeeccccceEEEeccchhhhhhhHHH
Confidence 23 245899999999999999885 33333 454 55678888889999866 77765444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=69.43 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=38.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|.|||+|.+|.++|..|.+. ||+|+++|+++++++...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 8999999999999999999998 9999999999999888443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00056 Score=61.39 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=58.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|-|.+|..+|..|... |.+|+++|+||-+. ++...| ++. .+.++++..+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~dG--------------------f~v-~~~~~a~~~ad 80 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAMDG--------------------FEV-MTLEEALRDAD 80 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHHTT---------------------EE-E-HHHHTTT-S
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhhcC--------------------cEe-cCHHHHHhhCC
Confidence 4799999999999999999998 99999999999653 333333 343 35788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
++|.++....- .+ .+..+.++++.++.+.+..+.+
T Consensus 81 i~vtaTG~~~v---------i~--------~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 81 IFVTATGNKDV---------IT--------GEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp EEEE-SSSSSS---------B---------HHHHHHS-TTEEEEESSSSTTS
T ss_pred EEEECCCCccc---------cC--------HHHHHHhcCCeEEeccCcCcee
Confidence 99988664210 11 2233557889988776555444
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=66.63 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=74.2
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+++|+. .....+++.|.++|++|.+||..-...+... ..+.+.++
T Consensus 2 ~~Ig~IGlG----------~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~----------------------~~g~~~~~ 49 (163)
T PF03446_consen 2 MKIGFIGLG----------NMGSAMARNLAKAGYEVTVYDRSPEKAEALA----------------------EAGAEVAD 49 (163)
T ss_dssp BEEEEE--S----------HHHHHHHHHHHHTTTEEEEEESSHHHHHHHH----------------------HTTEEEES
T ss_pred CEEEEEchH----------HHHHHHHHHHHhcCCeEEeeccchhhhhhhH----------------------Hhhhhhhh
Confidence 489999984 5899999999999999999997543322221 13578899
Q ss_pred CHHhhcccccEEEEEecCcc-cccccHHH--HHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLDYQR--IYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~~~~--~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
++.|+++++|+|++++.+++ .++. +.. +...+++..+|||+..+-.. +.+++.|+.|.--
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhHhhcccceEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 99999999999999998854 3331 122 66667677799999988764 3445678888654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=72.33 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=56.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||. |.||.|||..|.++ |+.|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999998 9999998310 125667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|... .. ..+++|++||+.|+.
T Consensus 204 IVI~avg~~~~v--------------~~------~~ik~GavVIDvgin 232 (284)
T PRK14179 204 ILVVAIGRGHFV--------------TK------EFVKEGAVVIDVGMN 232 (284)
T ss_pred EEEEecCccccC--------------CH------HHccCCcEEEEecce
Confidence 999999976321 11 237889999986643
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0003 Score=70.40 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=67.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-c--CHHHhhc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-T--DVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~--d~~~a~~ 77 (480)
|||+|||+ |.+|.++|..|+..+--.++.++|++ +.+ |..- ++... .....++.+ . |+.+.++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~----g~al----DL~~~---~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP----GVAA----DLSHI---NTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc----eeeh----HhHhC---CCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999876212589999998 221 1100 01000 001135532 2 3345599
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+||++...|..... + +. +.+.+++..+.|.++.+ +.++++ -|.|..+
T Consensus 68 daDivvitaG~~~k~g~---t-R~dll~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvDv 122 (310)
T cd01337 68 GADVVVIPAGVPRKPGM---T-RDDLFNINAGIVRDLATAVAKACP-KALILI-ISNPVNS 122 (310)
T ss_pred CCCEEEEeCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchhh
Confidence 99999999988754411 1 22 23445555666666644 444443 3567665
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00038 Score=64.99 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=50.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|++||+|.+|..+...+...-..+ -|.+||++.+++..+.+.. +.+..+++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999999998777520023 4889999999988776531 1123478888789999
Q ss_pred EEEEec
Q 011641 81 IVFVSV 86 (480)
Q Consensus 81 vVii~V 86 (480)
+++.|-
T Consensus 63 lvVEaA 68 (255)
T COG1712 63 LVVEAA 68 (255)
T ss_pred eeeeeC
Confidence 999994
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00039 Score=70.14 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCC-----eEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSI-----EVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
++||+|||+ |.+|.++|..|+..+--- ++.++|++++ +++.... ++........ .+.+++++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~~-~~~~i~~~~ 74 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPLL-AGVVITDDP 74 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhhc-CCcEEecCh
Confidence 369999998 999999999888651112 7999999643 2222111 0111110000 123444454
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+.+++||+||++-..|..... + +. +.+.+++..+.|.++.+++.+++.- |.|....-.
T Consensus 75 y~~~~daDiVVitaG~~~k~g~---t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 138 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPGM---E-RKDLLEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTNAL 138 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCCC---c-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHHHH
Confidence 4569999999999876643310 1 22 2234566666777766556655544 366655443
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00042 Score=71.61 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=64.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... +... .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~-------------------G~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD-------------------GFRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc-------------------CCEe-CCHHHHHhcCCE
Confidence 4799999999999999999987 89999999999765433321 1222 244667889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~ 130 (480)
+|.+++++ .++ ......++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99886642 122 23556788899888765543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=62.78 Aligned_cols=71 Identities=25% Similarity=0.330 Sum_probs=54.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCC--EEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN--LFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~--l~~t~d~~~a~~~ 78 (480)
.++.|||+|-+|..++..|+.. |.+ |++++|+.++.+.+.+.. . ... ....++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~------------~---~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF------------G---GVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH------------T---GCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc------------C---ccccceeeHHHHHHHHhh
Confidence 4799999999999999999998 765 999999999998887521 0 011 2234555566889
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||.|+|.+
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998765
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00031 Score=70.28 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=69.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..+....+-.+|.+|++++++.+++.+... . ....+. ..+.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999753223579999999999888765210 0 000122 4678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+.|+|++. | + +. ..+++|+.|...++-.|+..|
T Consensus 192 VitaT~s~~----------P----l---~~---~~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 192 VVTATTSRT----------P----V---YP---EAARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred EEEccCCCC----------c----e---eC---ccCCCCCEEEecCCCCCCccc
Confidence 999987642 1 1 11 235788888766665565543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=73.65 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=63.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||.|.+|..+|..+... |.+|+++|+++.+....... +.+. .+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~~-~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQV-VTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Ccee-ccHHHHHhcCCE
Confidence 4799999999999999999987 89999999998765322211 1222 356778899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|++|+.++.- . -......++++.++++.+-.
T Consensus 313 VI~atGt~~i---------I--------~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKDI---------I--------TLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCcccc---------c--------CHHHHhccCCCcEEEEcCCC
Confidence 9999654310 1 12445668889999875443
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00041 Score=70.13 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=68.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+... .+ ....+...++.++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQ-----------SK-FNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------Hh-cCCcEEEeCCHHHHHhcCCE
Confidence 4799999999999888777643113589999999999887764200 00 01124556788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+|++. . .+. ..+++|+.|+...+..|+..
T Consensus 196 Vi~aT~s~~-p----------------~i~---~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 196 IVTVTNAKT-P----------------VFS---EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred EEEccCCCC-c----------------chH---HhcCCCcEEEecCCCCcccc
Confidence 999987541 1 111 45678888865544444443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00056 Score=71.15 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=64.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... +... .+.+++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999987 89999999998775433221 1222 346677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~ 130 (480)
||.|++++ .++ ......++++.++++.+..+
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 99986542 122 24556788899888765443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00029 Score=70.96 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=78.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|..-|++|.+|||+...+... ....
T Consensus 139 el~gkTvGIiG~G----------~IG~~va~~l~afgm~v~~~d~~~~~~~~~-----------------------~~~~ 185 (324)
T COG0111 139 ELAGKTVGIIGLG----------RIGRAVAKRLKAFGMKVIGYDPYSPRERAG-----------------------VDGV 185 (324)
T ss_pred cccCCEEEEECCC----------HHHHHHHHHHHhCCCeEEEECCCCchhhhc-----------------------cccc
Confidence 5679999999984 467899999999999999999988765221 1234
Q ss_pred EEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
...+++++.++.+|+|+++++- ++=++ ++.++ ...|++..++|.+-+ ++|.+.+-
T Consensus 186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~-~a~MK~gailIN~aRG~vVde~aL~ 244 (324)
T COG0111 186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEE-LAKMKPGAILINAARGGVVDEDALL 244 (324)
T ss_pred eecccHHHHHhhCCEEEEcCCCCcchhcccCHHH-HhhCCCCeEEEECCCcceecHHHHH
Confidence 4457899999999999999887 44444 45554 568888889999866 77765444
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00074 Score=67.91 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=66.5
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHH--HHHcCCCCCcCCChHHHHhhhcCCCEEEecCH---HH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV---EK 74 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~ 74 (480)
|+||+|||+ |.+|..+|..|+.+....++.++|++...-+ .|+... ..-.+..++|. .+
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~---------------~~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHID---------------TPAKVTGYADGELWEK 72 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcC---------------cCceEEEecCCCchHH
Confidence 679999999 9999999999985522468999999321111 111100 00124433331 45
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
++++||+||++...|..... + +.| .+.+.++++.+.++ .++.+|+ .+|.|....-.+
T Consensus 73 ~l~gaDvVVitaG~~~~~~~---t-R~dll~~N~~i~~~i~~~i~~~-~~~~ivi-v~SNPvdv~~~~ 134 (321)
T PTZ00325 73 ALRGADLVLICAGVPRKPGM---T-RDDLFNTNAPIVRDLVAAVASS-APKAIVG-IVSNPVNSTVPI 134 (321)
T ss_pred HhCCCCEEEECCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHH-CCCeEEE-EecCcHHHHHHH
Confidence 69999999999988754310 0 111 11233334444444 2344443 477777664443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00065 Score=59.10 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=62.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.+||+| -|..+|..|++. |++|+++|+|++.++..++....... +.+ +..+++ ..+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 999999999998 99999999999999887754222110 111 223333 4689999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV 124 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi 124 (480)
|..+=|.|. +...+-.++.....+-+|.
T Consensus 81 iysirpp~e---------------l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPRD---------------LQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCHH---------------HHHHHHHHHHHcCCCEEEE
Confidence 999877541 3444556666665444443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=62.75 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=54.8
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhccC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVSEA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~a 79 (480)
||+||| .|++|..+...|+++ |.+++.. +.++.+.-..+....... .+. ..+.+.+ +.++ +.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~~---------~~~~~~~~~~~~-~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KGF---------EDLSVEDADPEE-LSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TTT---------EEEBEEETSGHH-HTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--ccc---------cceeEeecchhH-hhcC
Confidence 799999 999999999999986 6777554 555442211222111000 000 1233333 4444 7999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|+|+. ...+... ..++.+..||+.|+
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~---~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAP---KLLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHH---HHHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHH---HHhhCCcEEEeCCH
Confidence 9999997731 1122222 23456778888664
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00048 Score=70.88 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=68.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|||+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.+.++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999988 889999999999887775421 11100 00001234556789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||.|++.|... .+-+ +.+.....++++.+|++-+.-+.|..+
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCVE 275 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCcc
Confidence 99998543211 1110 113333556888888887755555543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00034 Score=60.04 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhccC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
||+||| .|.+|..++..|... +++++..+ +++.++-+.+......+.. .. ...+. .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHLKG-----EV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccccc-----cc------ccccccCChh--hcCC
Confidence 689999 599999999989874 47888776 6554332222211100000 00 00111 2222 2589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|+||+|+|... ..+.+..+.+.+.++++||++|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999988532 233333455556789999988754
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00076 Score=69.93 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=63.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+..... | ... .+.+++++.+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~------------------G-~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME------------------G-YEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc------------------C-CEE-ccHHHHHcCCCE
Confidence 4799999999999999999887 88999999999887665432 1 222 234567789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
||.|++++ .++ +.....++++.++++.+.
T Consensus 261 VI~atG~~------------------~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNK------------------DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence 99997643 122 334567888888877653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00072 Score=68.77 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=56.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|+|+|.||..++..+..+ ++++|.+ +|++++..+.+.+ ...+.+.+ ..+.........+.+..++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 78999999999999999988875 5788775 5667766665543 11222211 1111100111346777777777788
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999764
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00092 Score=66.78 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=70.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++...+=.+|.+|++++++.+++.+.. .+.....+...+++++++++||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~------------~~~~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF------------SKEFGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 469999999999999988886533468999999999988876421 00001236777899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. ...+++++.|....+..|+.
T Consensus 186 V~taT~s~~----------P----~~~-----~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 186 ITSITNSDT----------P----IFN-----RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCceEEecCCCCCCc
Confidence 999976531 1 110 13567787776544445554
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0007 Score=70.86 Aligned_cols=71 Identities=24% Similarity=0.261 Sum_probs=53.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... | .+|++++++.++.+.+.+... .......+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~g----------------~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKELG----------------GEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHcC----------------CeEeeHHHHHHHHhhCC
Confidence 4799999999999999999987 7 789999999988776654200 01111234556688999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 243 vVi~aT~s~~ 252 (417)
T TIGR01035 243 IVISSTGAPH 252 (417)
T ss_pred EEEECCCCCC
Confidence 9999987653
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0019 Score=66.36 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=71.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-CCC----eEEEE--ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-PSI----EVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G~----~V~~~--D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+... .+. .+.++ |+++++++..... +........ .+++++++..
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPY 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 38999999 999999999998762 121 34445 8888876654421 111110011 2355444444
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|..... + +.| .+.+++..+.|.++.+++.+|+.- |.|..+.-.
T Consensus 116 ~~~kdaDIVVitAG~prkpg~---t-R~dll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t~ 178 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPGM---E-RADLLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNAL 178 (387)
T ss_pred HHhCCCCEEEECCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHHH
Confidence 569999999999887754311 1 222 344555666666666566655543 466655433
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0008 Score=69.59 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=39.0
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCC
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISVSRINAWNSDQL 47 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~ 47 (480)
|||.++|+|++|. .++..|++. |++|+++|++++.+++|++.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCC
Confidence 8999999999998 457888887 8999999999999999997643
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00072 Score=67.65 Aligned_cols=66 Identities=17% Similarity=0.410 Sum_probs=47.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|+||..++..+.++ ++.++++ +|+++ +++. .+ . ....+.|.++.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6899999999999999988875 6889886 69985 4332 11 1 112234555667889
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 62 DVViIctPs~ 71 (324)
T TIGR01921 62 DVLILCMGSA 71 (324)
T ss_pred CEEEEcCCCc
Confidence 9999998764
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=66.40 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=67.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHH-cCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE--ecCHHHhh
Q 011641 2 VKICCIGA-GYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
|||+|||+ |.+|..+|..+.. ...+++++++|+++.. .+. ..+.+... ...++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~~--------~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIPT--------AVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCCC--------CceEEEeCCCCHHHHc
Confidence 89999999 9999999988854 2225789999997542 110 01100000 012232 35655668
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+++|+||+|...+..... .+.| .+.+.+..+.+.++. ++.+|+ .+|.|..+.-.
T Consensus 68 ~~~DiVIitaG~~~~~~~----~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi-vvsNP~D~~t~ 126 (312)
T PRK05086 68 EGADVVLISAGVARKPGM----DRSDLFNVNAGIVKNLVEKVAKTC-PKACIG-IITNPVNTTVA 126 (312)
T ss_pred CCCCEEEEcCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccCchHHHHH
Confidence 999999999988754310 0112 123344455555553 344444 36778765443
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00078 Score=77.01 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=54.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCe-------------EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-------------VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-------------V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|+||+|||+|.||.+.|..|++. ++.+ |++.|+++++.+.+.++.. +. ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~---------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NA---------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CC---------ceEE
Confidence 46899999999999999999975 3555 9999999999888776421 10 0122
Q ss_pred E-ecCHHHh---hccCcEEEEeccCCC
Q 011641 68 F-STDVEKH---VSEADIVFVSVNTPT 90 (480)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~Vptp~ 90 (480)
. .+|.++. ++++|+|++|+|+..
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchh
Confidence 2 3454443 367999999999754
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=67.23 Aligned_cols=68 Identities=21% Similarity=0.412 Sum_probs=48.3
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|.. .+..+... ++.+++ ++|+++++... . . +...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~-~----------------~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---D-W----------------PTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---h-C----------------CCCceeCCHHHHhcCC
Confidence 58999999999974 56666653 578876 58999876531 1 0 12345678888775
Q ss_pred cCcEEEEeccCCC
Q 011641 78 EADIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|++|+|+..
T Consensus 64 ~vD~V~I~tp~~~ 76 (346)
T PRK11579 64 NIDLIVIPTPNDT 76 (346)
T ss_pred CCCEEEEcCCcHH
Confidence 5799999988643
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0028 Score=63.53 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=70.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|+|.+|..+|..|..- | .++.| .|++..-+...+- ... ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~-------------------~~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY-------------------YAE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh-------------------ccc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 55555 4433322222110 001 245677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|-. .++..+ +=+.+...++++.++|+.+-......+.+.+.|++.
T Consensus 220 ~ivv~~pLt-----------~~T~~l--iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KETRHL--INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred EEEEecCCC-----------HHHHHH--hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999998742 222222 235677889999999876544445556677777664
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=66.93 Aligned_cols=121 Identities=12% Similarity=0.167 Sum_probs=73.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHc-------CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALK-------CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-------~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|.++|..|+.. .--.+++++|+++++++...-. +.....-.. .++.++++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~~-~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPLL-REVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 48999999 99999999999864 1113799999999887654421 111110011 2355444444
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|.... ..+.| .+.+++..+.|.++..++.+|++- |.|..+.-.
T Consensus 172 e~~kdaDiVVitAG~prkpG----~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~ 234 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGPG----MERADLLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL 234 (444)
T ss_pred HHhCcCCEEEECCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence 55999999999988765431 11222 333455556666643445555443 466655443
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00095 Score=67.34 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=69.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||+|||+ |.+|..+|..|+..+- .+++.++|+++ ++.+.... ++........ ...+++++..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~~~-~~~~i~~~~~ 71 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFPLL-KGVVITTDPE 71 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhccccc-CCcEEecChH
Confidence 38999999 9999999999987510 12599999987 43322111 1111100000 1234444555
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+++++||+||++-..|..... ++ ..+.+.+++..+.|.++.+++.+++.- |.|....
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~---tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGM---ERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCC---cHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 679999999999887654311 11 012334556666777775445555443 4665543
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00082 Score=70.26 Aligned_cols=88 Identities=22% Similarity=0.147 Sum_probs=63.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+. +....| ... .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999876 89999999998764 333322 122 24567788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|.++.. -+.......++++.++++.+-.
T Consensus 312 VVI~tTGt~~-----------------vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 312 IFVTTTGNKD-----------------IIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred EEEECCCCcc-----------------chHHHHHhcCCCCCEEEEcCCC
Confidence 9998765431 0124455678899999886653
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00089 Score=67.78 Aligned_cols=71 Identities=25% Similarity=0.371 Sum_probs=51.2
Q ss_pred CcEEEEECCChhH-HHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-EEecCHHHhh
Q 011641 1 MVKICCIGAGYVG-GPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~ 76 (480)
++||||||+|.++ ...+..+... ++ .-|.++|+++++.+.+.+.. ++ .+.+|+++.+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~-~~~~~~vav~d~~~~~a~~~a~~~------------------~~~~~~~~~~~ll 63 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL-GGGLELVAVVDRDPERAEAFAEEF------------------GIAKAYTDLEELL 63 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC-CCceEEEEEecCCHHHHHHHHHHc------------------CCCcccCCHHHHh
Confidence 4799999999555 5677778775 12 24667799999988776521 11 4667888877
Q ss_pred cc--CcEEEEeccCCC
Q 011641 77 SE--ADIVFVSVNTPT 90 (480)
Q Consensus 77 ~~--aDvVii~Vptp~ 90 (480)
++ .|+|+||+|+..
T Consensus 64 ~~~~iD~V~Iatp~~~ 79 (342)
T COG0673 64 ADPDIDAVYIATPNAL 79 (342)
T ss_pred cCCCCCEEEEcCCChh
Confidence 64 699999988654
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=66.70 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=71.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+... +. .-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ---AL----------GFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH---hc----------CCcEEEECCHHHHhcCCCE
Confidence 4699999999999999988865445789999999999887764210 00 1235667899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. ...+++|+.|..-++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999976531 1 111 14567898887655555554
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=72.03 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=63.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE------EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA------VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~------~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
++|+|||+|.+|...|.+|... |++|+ ++|.+.+..+...+. ++.. .+++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999999987 89988 444443333332221 2333 457888
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++.||+|++.+|... -..+.+++.++++++.++..+-
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecC
Confidence 999999999987421 1344588999999999886543
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=65.56 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=68.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..|+...+-..|.+||+++++.+++.+... +...-.+...++.+++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS------------SVVGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH------------hhcCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999999854223578899999998887764210 000112556778888886 999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|++|+|+.. | +.. ...+++++.|..-++..|+..
T Consensus 197 Vv~aTps~~----------P----~~~-----~~~l~~g~hV~~iGs~~p~~~ 230 (326)
T PRK06046 197 LVTTTPSRK----------P----VVK-----AEWIKEGTHINAIGADAPGKQ 230 (326)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCCccc
Confidence 999987531 1 111 235678888765555555543
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00095 Score=67.65 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=56.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|...+..++...+..+|.+|+|++++.+.+.+..... ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~------------~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE------------LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc------------cCceEEEeCCHHHHHccCCE
Confidence 579999999999998888875322368999999999998886521000 00124556888888999999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|+|+.
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99997753
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=65.71 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=85.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
..++|||+|..+......+..-.+--+|.+|+++++..+++.+.- -++ ....+...++.++++++||+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l-----------~~~-~~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL-----------RKR-GGEAVGAADSAEEAVEGADI 198 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH-----------Hhh-cCccceeccCHHHHhhcCCE
Confidence 358999999999999999987655678999999999988877420 000 00125778899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+.|+|+.. |-+ -...+++++.|...++-.|+..+--.+++... +-.++..++..
T Consensus 199 Ivt~T~s~~----------Pil---------~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 199 VVTATPSTE----------PVL---------KAEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEEecCCCC----------Cee---------cHhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 999977642 221 13567789988776666666654333445443 13456777654
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00091 Score=61.22 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=63.4
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
|.|+|+ |.+|..++..|.++ |++|+++-|++++.+. ..+ ..+.. +.+.-..+..++++++|.|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789995 99999999999998 8999999999998877 211 11110 0110012345678899999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|.+++.+.. |....+.+++.+... +...+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999975431 344445555554443 33455555443
|
... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00058 Score=72.14 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=53.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHh-hccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~a 79 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...++.. +..+-...++++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999998 9999999999999988865 2111110 111111123333 6789
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+|++++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999764
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00095 Score=68.75 Aligned_cols=103 Identities=12% Similarity=0.205 Sum_probs=76.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||.....+....+ ++
T Consensus 189 ~L~gktVGIvG~G----------~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~----------------------g~ 236 (385)
T PRK07574 189 DLEGMTVGIVGAG----------RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL----------------------GL 236 (385)
T ss_pred ecCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc----------------------Cc
Confidence 4689999999984 578899999999999999999986433322221 24
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
++..++++.++.+|+|+++.+-.+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 295 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVDRDAVV 295 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhC-HHHHhcCCCCcEEEECCCCchhhHHHHH
Confidence 556789999999999999988643 233 34 456778998889999865 66765443
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=66.21 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=54.0
Q ss_pred cEEEEECCChhHHHH-HHHHHHc---CCCCeEEEEECC-HHHHHHHHcCCCCCcCCChHHHHhhhc-CCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPT-MAVIALK---CPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCR-GKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~---~~G~~V~~~D~~-~~~v~~l~~~~~~~~e~~l~~~~~~~~-~~~l~~t~d~~~a 75 (480)
|||+|||.|..-++- ...|++. .++-+|+++|+| +++++.+.+- ....+++.. .-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 799999999975533 3444442 245789999999 7887654320 011111111 1357889999999
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999997643
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00074 Score=63.34 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
.||+|+|+|.+|..+|..|++. |+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999998 87 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=70.67 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=77.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||....+.. .++ ++
T Consensus 135 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g~ 181 (525)
T TIGR01327 135 ELYGKTLGVIGLG----------RIGSIVAKRAKAFGMKVLAYDPYISPERA-EQL----------------------GV 181 (525)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------CC
Confidence 4689999999984 47789999999999999999998654332 211 24
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+.+++++.++++|+|+++.+.. +-++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL~ 240 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIG-AEELAKMKKGVIIVNCARGGIIDEAALY 240 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcC-HHHHhcCCCCeEEEEcCCCceeCHHHHH
Confidence 45568999999999999999874 4444 44 355668988889999865 77765443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00093 Score=68.06 Aligned_cols=34 Identities=32% Similarity=0.695 Sum_probs=27.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||||+|||+ |++|..++..|+++ ++++++.+-.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~ 36 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSR 36 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECc
Confidence 689999996 99999999999875 67887664433
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00085 Score=67.80 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=69.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-----CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-----PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-----~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||+|+|+ |.+|..++..|.... .+.+|.++|+++.. +.+ .+.. -++...... ..++++.+.++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~~----~Dl~d~~~~-~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGVV----MELQDCAFP-LLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-ccee----eehhhcccc-ccCCceecCCHHHH
Confidence 58999998 999999999998741 13589999996531 111 1100 001100000 01244556776667
Q ss_pred hccCcEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~--~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||++-..|..... ++. ...+.+.+++..+.|.++.+++.+++.-| .|...
T Consensus 76 l~~aDiVI~tAG~~~~~~~-~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~ 133 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGM-ERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANT 133 (325)
T ss_pred hCCCCEEEEeCCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHH
Confidence 9999999999876643210 000 01123344556667777765566555433 45444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=66.00 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=70.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+..-.+-.+|++|++++++.+++.+... +.+ -.+..+++.++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~~----------~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GPG----------LRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hcC----------CcEEEeCCHHHHHhcCCE
Confidence 3699999999999888777654345689999999999888764210 001 136677899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+++... .| + ++ .+.+++|+.|....+..|+..
T Consensus 197 IvtaT~S~~~--------~P----v---l~--~~~lkpG~hV~aIGs~~p~~~ 232 (346)
T PRK07589 197 ITTVTADKTN--------AT----I---LT--DDMVEPGMHINAVGGDCPGKT 232 (346)
T ss_pred EEEecCCCCC--------Cc----e---ec--HHHcCCCcEEEecCCCCCCcc
Confidence 9999764310 01 1 11 145688887765555555543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=67.91 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=53.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+... .......+..+.+.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEFG----------------GEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHcC----------------CcEeeHHHHHHHhccCC
Confidence 5799999999999999999987 76 89999999998877654210 01111234556678999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 245 vVI~aT~s~~ 254 (423)
T PRK00045 245 IVISSTGAPH 254 (423)
T ss_pred EEEECCCCCC
Confidence 9999988653
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0033 Score=60.91 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=48.2
Q ss_pred cEEEEECCChhHHHHHHHHHHc-CCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh-hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALK-CPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
+||+|||+|+||..++..+... ..+++ +.++++++++.+.+... ....+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 6999999999999999998763 11354 44688888777766532 3355677773 578
Q ss_pred CcEEEEecc
Q 011641 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.|-.
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999943
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0015 Score=65.71 Aligned_cols=102 Identities=21% Similarity=0.166 Sum_probs=62.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++...+-.+|.+|++++++.+++.+.... ..-.+..++|.++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------------LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------------CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------------ccccceeccchhhhcccCCE
Confidence 36999999999999999888765556899999999998887652111 01247788999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+|+.... |=+ -...+++++.|...+.-.|+.
T Consensus 196 i~taT~s~~~~--------P~~---------~~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTPA--------PVF---------DAEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSEE--------ESB----------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCCC--------ccc---------cHHHcCCCcEEEEecCCCCch
Confidence 99997754200 101 024677888886655554443
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=67.53 Aligned_cols=103 Identities=12% Similarity=0.152 Sum_probs=76.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-+..+++.|...|++|.+|||.....+.... .++
T Consensus 196 ~L~gktVGIVG~G----------~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~----------------------~g~ 243 (386)
T PLN03139 196 DLEGKTVGTVGAG----------RIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE----------------------TGA 243 (386)
T ss_pred CCCCCEEEEEeec----------HHHHHHHHHHHHCCCEEEEECCCCcchhhHhh----------------------cCc
Confidence 5789999999974 47789999999999999999997543322221 124
Q ss_pred EEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+.+++++.++++|+|+++.+. ++-++ ++ .++.+.|++..++|++-+ ++|.+.+-
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 302 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFN-KERIAKMKKGVLIVNNARGAIMDTQAVA 302 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhC-HHHHhhCCCCeEEEECCCCchhhHHHHH
Confidence 4556899999999999999885 33333 34 457788998889999854 77765443
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0015 Score=65.48 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=67.3
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ec--CHHHhhcc
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-ST--DVEKHVSE 78 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~--d~~~a~~~ 78 (480)
||+|||+ |.+|.++|..|+.++-..++.++|+++. + |..- ++... ....+++. +. ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a--~----g~a~----DL~~~---~~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA--A----GVAA----DLSHI---PTAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC--c----EEEc----hhhcC---CcCceEEEecCCCchHHHcCC
Confidence 7999999 9999999999988722348999999871 1 2100 01000 00113443 22 23456999
Q ss_pred CcEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 79 ADIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~--~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||++...|..... .+. -..+.+.+++..+.|.++. ++.++++ -|.|..+
T Consensus 68 aDivvitaG~~~~~g~-~R~dll~~N~~I~~~i~~~i~~~~-p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKPGM-TRDDLFNVNAGIVKDLVAAVAESC-PKAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCCCc-cHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEE-ecCchhh
Confidence 9999999987654311 000 0113344556666666664 4454433 3567665
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=67.38 Aligned_cols=97 Identities=25% Similarity=0.425 Sum_probs=56.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhcc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|||+|||+ |++|..++..|.++ |++++. +++.+...-+.+.+-. +.+... ..+.+. .+.++.+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~~------~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRGL------VDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----cccccc------CCceeecCCHHHhhcC
Confidence 79999998 99999999999976 788888 4565542221121100 000000 011222 244554468
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+|+... .+....+ ...+..||+.|+
T Consensus 69 ~DvVf~alP~~~s---------------~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGVS---------------AELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchHH---------------HHHHHHH---HhCCCEEEeCCh
Confidence 9999999885321 2222222 245788888775
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00073 Score=72.21 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... |. +|++++++.++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 5799999999999999999987 75 79999999999988875210 000 00112245566789999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998765
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0024 Score=64.41 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=68.5
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|+++.. .+.... . +........ ..+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---D-----l~d~~~~~~-~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---E-----LMDCAFPLL-DGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---e-----hhcccchhc-CceeccCChHH
Confidence 6999999 9999999999987410 1269999996542 221111 0 100000000 12344445345
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++||+||++-..|..... ++ ..+.+.+++..+.|.++.+++.+++.- |.|......
T Consensus 72 ~~~~aDiVVitAG~~~~~~~---tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 133 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKEGM---ERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTNAL 133 (324)
T ss_pred HhCCCCEEEEcCCCCCCCCC---cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 69999999999887654310 11 112334556666777765455555543 467655433
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=65.15 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=65.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHH--HHHcCCCCCcCCChHHHHhhhcCCCEE---EecCHHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~~a 75 (480)
.||+|||+ |.+|..+|..|+.+....++.++|+++..-+ .|..... .-.+. -++|+.++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---------------~~~i~~~~~~~d~~~~ 83 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---------------PAQVRGFLGDDQLGDA 83 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---------------CceEEEEeCCCCHHHH
Confidence 48999999 9999999999996622358999999871100 1111000 01232 23445667
Q ss_pred hccCcEEEEeccCCCCCCC-CCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 76 VSEADIVFVSVNTPTKTQG-LGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~-~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
+++||+||++...|..... .+.--..+...+.++.+.+.++. ++.+|+ .+|.|..
T Consensus 84 l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivi-vvSNPvD 139 (323)
T PLN00106 84 LKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVN-IISNPVN 139 (323)
T ss_pred cCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE-EeCCCcc
Confidence 9999999999887654310 00000112233444455555554 344443 3567765
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=58.83 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=52.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| .|.+|..++.-..++ ||+|+.+-||++++.... +. .+.+. .+.--+...+.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~~-~~-~i~q~------------Difd~~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAARQ-GV-TILQK------------DIFDLTSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhccccc-cc-eeecc------------cccChhhhHhhhcCCc
Confidence 8999999 599999999999988 999999999999886642 21 11111 1111122345688999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+...+
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=60.98 Aligned_cols=77 Identities=22% Similarity=0.241 Sum_probs=49.8
Q ss_pred EEEEECCChhHHHHHH--HHHHc--CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhc
Q 011641 3 KICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~ 77 (480)
||+|||.|..-.+.-. .+... .++.++.++|+|+++++...+- .+.++++ -..-++..|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 8999999988776432 23321 2455899999999998865430 0112222 11234678999999999
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999865
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0026 Score=67.54 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=69.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-C--------H
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-D--------V 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d--------~ 72 (480)
.|+.|+|+|.+|+..+..+... |..|+++|+++++.+..++-.....+....+-- +-..+..+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g-~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEG-GSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccccc-cccccceeecCHHHHHHHHHHH
Confidence 3799999999999988888887 889999999999988877632222111110000 00011112222 1 2
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
.+.++++|+||.|+--|-.. .| .-+.++..+.++++.+|++-|.-+.|
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 23467899999998222110 11 11235556778899999887654333
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=67.56 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=59.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-E-ecCHHHhhc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-F-STDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~-t~d~~~a~~ 77 (480)
+|||+|+|+ |++|..+...|..+ |+++|+.+..+.+.-+.+......+. .+... + ..+.++ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 479999995 99999999999987 78899999875443222222111110 01111 1 112222 58
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
++|+||+|+|.. +...+.+.+..+..||+.|+-
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 899999998742 234444444567888887763
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=65.71 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=46.4
Q ss_pred CcEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.++.. .+..+....++++|. ++|+++++. ...+.. +...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~-----------------~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY-----------------SHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc-----------------CCCcccCCHHHHhcC
Confidence 689999999997752 344443322357775 689987654 222210 12345678888775
Q ss_pred -cCcEEEEeccCCC
Q 011641 78 -EADIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 63 ~~iD~V~I~tp~~~ 76 (344)
T PRK10206 63 PDVKLVVVCTHADS 76 (344)
T ss_pred CCCCEEEEeCCchH
Confidence 6799999988653
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0031 Score=64.03 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=74.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||...... ...+ +.
T Consensus 147 ~L~gktvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------~~ 193 (333)
T PRK13243 147 DVYGKTIGIIGFG----------RIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL----------------------GA 193 (333)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc----------------------CC
Confidence 4689999999984 4778999999999999999999765432 1111 12
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+ .++++.++++|+|+++++..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 194 ~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~-~~~~~~mk~ga~lIN~aRg~~vd~~aL~ 251 (333)
T PRK13243 194 EY-RPLEELLRESDFVSLHVPLTKETYHMIN-EERLKLMKPTAILVNTARGKVVDTKALV 251 (333)
T ss_pred Ee-cCHHHHHhhCCEEEEeCCCChHHhhccC-HHHHhcCCCCeEEEECcCchhcCHHHHH
Confidence 32 478999999999999998754 222 44 356778998889999865 66765443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=63.84 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=65.9
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhccCcEEEE
Q 011641 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEADIVFV 84 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (480)
|||+|.+|.++|..|+.+.-..++.++|+++++++...... ..... ....+.+++ .+++ .+++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl--------~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDL--------QHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH--------HHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 69999999999999987622247999999887655433210 00000 001123333 4454 5999999999
Q ss_pred eccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 85 SVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 85 ~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+...|..... + +. +...+++..+.|.++.+ +.+|++- |.|..+.
T Consensus 71 tag~~rk~g~---~-R~dll~~N~~i~~~~~~~i~~~~p-~~~vivv-sNP~d~~ 119 (299)
T TIGR01771 71 TAGAPQKPGE---T-RLELVGRNVRIMKSIVPEVVKSGF-DGIFLVA-TNPVDIL 119 (299)
T ss_pred CCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-CCHHHHH
Confidence 9887654311 1 11 22334555666666644 4444432 4565543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0025 Score=64.97 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=76.0
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+ ++-+..+++.|...|++|.+|||....+... .++ .|. +........
T Consensus 155 ~~l~gktvGIiG~----------G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-~~~-------~~~---~~~~~~~~~ 213 (347)
T PLN02928 155 DTLFGKTVFILGY----------GAIGIELAKRLRPFGVKLLATRRSWTSEPED-GLL-------IPN---GDVDDLVDE 213 (347)
T ss_pred cCCCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCChhhhh-hhc-------ccc---ccccccccc
Confidence 3678999999997 3578999999999999999999975432211 000 000 000000000
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.....++++.++.+|+|+++++.. +-+++=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~ 273 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVL 273 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 012358999999999999998863 3333322466788998889999854 77866443
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0035 Score=63.46 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=56.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||+|.+|...+..|+... + .+|++|+|++++.+.+.+... .. ....+...+++++++.+||
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997431 5 579999999999888764210 00 0112455678888899999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999997753
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.004 Score=62.88 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=74.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL-GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-...+++.|. ..|.+|.+|||....+.. ..+ +
T Consensus 142 ~L~gktvGIiG~G----------~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~~~----------------------~ 188 (323)
T PRK15409 142 DVHHKTLGIVGMG----------RIGMALAQRAHFGFNMPILYNARRHHKEAE-ERF----------------------N 188 (323)
T ss_pred CCCCCEEEEEccc----------HHHHHHHHHHHhcCCCEEEEECCCCchhhH-Hhc----------------------C
Confidence 4689999999984 57789999998 889999999998654321 111 2
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.++ .++++.++.+|+|+++.+..+ -++ ++. +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 189 ~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~vVde~AL~ 247 (323)
T PRK15409 189 ARY-CDLDTLLQESDFVCIILPLTDETHHLFGA-EQFAKMKSSAIFINAGRGPVVDENALI 247 (323)
T ss_pred cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH-HHHhcCCCCeEEEECCCccccCHHHHH
Confidence 333 489999999999999988744 233 454 45678998889999855 77765443
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0028 Score=61.86 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=63.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|||.|.-|.+-|.+|.++ |.+|++==+.... .+...+ .++++ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 5899999999999999999998 9997754332221 222221 23443 45688899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~ST 128 (480)
+|++-+|.-.. .++.+ .|.|.|+++..+.....
T Consensus 77 vim~L~PDe~q---------------~~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 77 VVMILLPDEQQ---------------KEVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred EEEEeCchhhH---------------HHHHHHHhhhhhcCCceEEeccc
Confidence 99999874321 34555 89999999997765443
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0037 Score=62.79 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=73.3
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||...... ..+
T Consensus 142 ~L~gktvGIiG~G----------~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------------------~~~ 185 (311)
T PRK08410 142 EIKGKKWGIIGLG----------TIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------------------EEY 185 (311)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhhcCCEEEEECCCccccc--------------------------cCc
Confidence 3689999999984 4678999999999999999999643210 112
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+ .++++.++.+|+|+++.+.. +-++ ++- +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 186 ~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~-~~~~~Mk~~a~lIN~aRG~vVDe~AL~ 243 (311)
T PRK08410 186 ER-VSLEELLKTSDIISIHAPLNEKTKNLIAY-KELKLLKDGAILINVGRGGIVNEKDLA 243 (311)
T ss_pred ee-ecHHHHhhcCCEEEEeCCCCchhhcccCH-HHHHhCCCCeEEEECCCccccCHHHHH
Confidence 22 47999999999999998874 3344 454 45678998889999765 77865443
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.003 Score=62.47 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=53.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|.+++..|+.. | .+|++++|+.++.+.+.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 4789999999999999999988 7 79999999999988876521100 00122113334578899
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|...
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999987654
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0031 Score=63.83 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+++|+|+|+. +-+..+++.|...|.+|.+|||...... . .+.
T Consensus 144 l~g~~VgIIG~G----------~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~------------------------~~~ 187 (330)
T PRK12480 144 VKNMTVAIIGTG----------RIGAATAKIYAGFGATITAYDAYPNKDL--D------------------------FLT 187 (330)
T ss_pred cCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEEeCChhHhh--h------------------------hhh
Confidence 578899999985 4678999999999999999999754321 0 122
Q ss_pred EecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
+..+++++++++|+|+++.+... .+.+=-..+.+.|++..++|++-+ ++|.+.+
T Consensus 188 ~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL 244 (330)
T PRK12480 188 YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDL 244 (330)
T ss_pred ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHH
Confidence 45688999999999999998864 233223567788988889999854 6675544
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0037 Score=67.40 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=75.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||+...+.. .. .++
T Consensus 137 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~----------------------~g~ 183 (526)
T PRK13581 137 ELYGKTLGIIGLG----------RIGSEVAKRAKAFGMKVIAYDPYISPERA-AQ----------------------LGV 183 (526)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hh----------------------cCC
Confidence 4689999999984 57889999999999999999998654322 11 124
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
++. ++++.++.+|+|+++.+.. +-++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL 240 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIG-AEELAKMKPGVRIINCARGGIIDEAAL 240 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcC-HHHHhcCCCCeEEEECCCCceeCHHHH
Confidence 444 7999999999999999884 3444 34 456788988889999865 6776544
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0061 Score=61.88 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=52.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCC-CCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|||+ .+|...+..+.+. + ++++. ++|+++++.+++.+.. ++...+|+++.+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~ 63 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDI 63 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCC
Confidence 58999999 6799899888875 3 56765 5899999988877521 123567888988889
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|++++++||.
T Consensus 64 Di~~V~ipt~ 73 (343)
T TIGR01761 64 DIACVVVRSA 73 (343)
T ss_pred CEEEEEeCCC
Confidence 9999999763
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0041 Score=66.17 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++++|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999998887764210 00000112222 568999
Q ss_pred EEEeccC
Q 011641 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
||.|+|.
T Consensus 394 VInatP~ 400 (477)
T PRK09310 394 IINCLPP 400 (477)
T ss_pred EEEcCCC
Confidence 9999875
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=61.76 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=78.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCCh-HHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTE-DQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.||+++||. ....+++..|.++|++|.+||..... .+.... .+....
T Consensus 1 ~kIafIGLG----------~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----------------------~Ga~~a 48 (286)
T COG2084 1 MKIAFIGLG----------IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----------------------AGATVA 48 (286)
T ss_pred CeEEEEcCc----------hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----------------------cCCccc
Confidence 379999984 58899999999999999999987665 333322 245677
Q ss_pred cCHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEE
Q 011641 404 WDAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVY 463 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~ 463 (480)
.++.|+++++|+||.+..-+. .++.- ...+.+.+++..++||...+=+. +.+++.|+.|.
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 899999999999999987754 22221 23566677777899999887653 34445677664
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=67.12 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=55.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||.|||+|-||..++..|+.+ | .++++++|+.++.+.+.+... .+.....++..+.+..+|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999988 6 579999999999888875310 011122244556688999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999988763
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=63.31 Aligned_cols=76 Identities=30% Similarity=0.537 Sum_probs=46.7
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHh-hc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKH-VS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a-~~ 77 (480)
|+||+||| .||-|.-+...|+.+ |..+++.+..+..+=+.+.+. .|.+.... .+++.. |.++. .+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~-----~p~l~g~~------~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDV-----HPNLRGLV------DLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHh-----Cccccccc------ccccccCChhhhhcc
Confidence 68999999 599999999999987 678877776544322222221 11111100 122222 23332 45
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||+|+|.
T Consensus 70 ~~DvvFlalPh 80 (349)
T COG0002 70 ECDVVFLALPH 80 (349)
T ss_pred cCCEEEEecCc
Confidence 69999999884
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0035 Score=62.13 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=53.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|.+|.+++..|+.. |. +|+++||+.++.+.+.+...... + ...+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~~~~-~----------~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELNARF-P----------AARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHhhC-C----------CeEEEeccchHhhhCCCC
Confidence 4799999999999999999987 75 79999999999988764210000 0 001222234444578899
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999997653
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0081 Score=61.71 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=73.2
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-.-.+++.|...|.+|.+|||...... ..
T Consensus 112 ~~L~gktvGIIG~G----------~IG~~vA~~l~a~G~~V~~~dp~~~~~~--------------------------~~ 155 (378)
T PRK15438 112 FSLHDRTVGIVGVG----------NVGRRLQARLEALGIKTLLCDPPRADRG--------------------------DE 155 (378)
T ss_pred CCcCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------cc
Confidence 36789999999974 5778999999999999999999543210 00
Q ss_pred eEEecCHHhhcccccEEEEEecCcc------cccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE------FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~------~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
. ...++++.++.+|+|+++++... +.=++- +..+.|++.+++|++-+ ++|.+.+.
T Consensus 156 ~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVDe~AL~ 218 (378)
T PRK15438 156 G-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE-KLIRSLKPGAILINACRGAVVDNTALL 218 (378)
T ss_pred c-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH-HHHhcCCCCcEEEECCCchhcCHHHHH
Confidence 1 12478999999999999887532 333454 45678888789999876 88876554
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0075 Score=59.56 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=46.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHH-HHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRIN-AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~-~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.-++..+.+. ++.++. ++|++++... ...+. .|.-...++.++.+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~-----------------~Gi~~~~~~~e~ll~~~ 63 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARARE-----------------LGVKTSAEGVDGLLANP 63 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHH-----------------CCCCEEECCHHHHhcCC
Confidence 6899999999999887777653 467766 5788886532 12211 011133456666553
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 64 dIDaV~iaTp~~ 75 (285)
T TIGR03215 64 DIDIVFDATSAK 75 (285)
T ss_pred CCCEEEECCCcH
Confidence 679999998764
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0075 Score=59.88 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred HHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011641 313 RVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPM 392 (480)
Q Consensus 313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
.+.+..+..+.+++|+|+|... -+..+++.|...|++|.++|..........+++
T Consensus 140 ~al~~~~~~l~gk~v~IiG~G~----------iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g--------------- 194 (287)
T TIGR02853 140 MAIEHTDFTIHGSNVMVLGFGR----------TGMTIARTFSALGARVFVGARSSADLARITEMG--------------- 194 (287)
T ss_pred HHHHhcCCCCCCCEEEEEcChH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC---------------
Confidence 3333333467899999999854 789999999999999999998643322111111
Q ss_pred CcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhhhhcCcEEE
Q 011641 393 SPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKLREIGFIVY 463 (480)
Q Consensus 393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~~~~g~~y~ 463 (480)
...+. ..++.+.++++|.|+..+++.-+ + ....+.|++..+|||.-.- .+-+.+++.|.+.+
T Consensus 195 ----~~~~~-~~~l~~~l~~aDiVint~P~~ii---~-~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 ----LIPFP-LNKLEEKVAEIDIVINTIPALVL---T-ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKAL 259 (287)
T ss_pred ----Ceeec-HHHHHHHhccCCEEEECCChHHh---C-HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEE
Confidence 00111 23567788999999999877532 3 3455677877899999763 34466677887664
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.021 Score=63.62 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=85.9
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC----c
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP----E 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (480)
||+|+|. +.+...++++.+.++++++|.+-+++.....+.+.+.+.... .-+|..+| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~---~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARI---GQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccC---CeEEecCCcCcCc
Confidence 6889773 356788999999999999999877666444444444443211 12466666 5
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHhhhhHhHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW-SAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
..+..++..++++...+++ ++.+.+++++.+.++++++.++ ..+..++++ .-+++-++.-.-+.+..++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il-~p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVL-CALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555567788887777766 4444456788999999999985 466666654 34555555555555555555544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=58.44 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=81.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHh---hc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKH---VS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a---~~ 77 (480)
.+|+.||+|..|.+....++.+.++-.++++|++++.++..++.-.. ..++. .+++|. .|..+. ..
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999997766666655667899999999988766542100 11221 234442 232221 36
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc-CCCCceEEeeCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN-SKGIKFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~-~~g~~~~v~~~P 156 (480)
+.|+||+.+=-.. |-..-..+++.+.+.+++|.+++..| .-|....+.+.+... ..|.+....+.|
T Consensus 195 ~FDlVF~~ALi~~-----------dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGM-----------DKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccc-----------ccccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 7899999842111 11122678999999999999998876 234444444433221 114444555677
Q ss_pred c
Q 011641 157 E 157 (480)
Q Consensus 157 e 157 (480)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.009 Score=61.67 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=55.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|+.|||+|-||.-.|.+|+.+ | .+|++.+|+.++.+.|.+... +....-+++.+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~~----------------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKLG----------------AEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHhC----------------CeeecHHHHHHhhhhCC
Confidence 4799999999999999999998 6 789999999999998876311 12222345566789999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999997765
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0025 Score=64.00 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=51.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|++|..++..|.++ ||+|++++|++++...+......+. .+.+.-..++.++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999998 9999999999876554442111111 112221234556788999
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-++..
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.002 Score=66.74 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=68.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCC--CCCcCCChHHHHhhhcCCCEEE-ecC---HHHhh
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQ--LPIYEPGLDGVVKQCRGKNLFF-STD---VEKHV 76 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~--~~~~e~~l~~~~~~~~~~~l~~-t~d---~~~a~ 76 (480)
|.|+|+|.+|..++..|+++. .+ +|++.|++.++.+++.+.. ..+. ...+ .+| +++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~--------------~~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVE--------------AVQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEE--------------EEE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhcccccee--------------EEEEecCCHHHHHHHH
Confidence 789999999999999999873 35 8999999999999887531 1110 0011 122 44567
Q ss_pred ccCcEEEEeccCCCCCCCC-----CCCCCCChHHHHHHHHHHHhhC-CCCcEEEEecCCCcchHHHHHH
Q 011641 77 SEADIVFVSVNTPTKTQGL-----GAGKAADLTYWESAARVIADVS-KSDKIVVEKSTVPVKTAEAIEK 139 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~-----~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~ 139 (480)
+++|+||-|+|......-. .+....|.+++......+.+.. +.+..++......||.+.-+..
T Consensus 66 ~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~ 134 (386)
T PF03435_consen 66 RGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLAR 134 (386)
T ss_dssp TTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHH
T ss_pred hcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHH
Confidence 8999999999743211000 0011334443333333332222 3577777777888888776543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0058 Score=61.11 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=71.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||....... .
T Consensus 119 ~L~gktvgIiG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~~---------------------------~ 161 (303)
T PRK06436 119 LLYNKSLGILGYG----------GIGRRVALLAKAFGMNIYAYTRSYVNDGI---------------------------S 161 (303)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcccCc---------------------------c
Confidence 4689999999984 56789999998899999999997432100 0
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
....++++.++.+|+|+++.+..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~-~~~l~~mk~ga~lIN~sRG~~vd~~aL 219 (303)
T PRK06436 162 SIYMEPEDIMKKSDFVLISLPLTDETRGMIN-SKMLSLFRKGLAIINVARADVVDKNDM 219 (303)
T ss_pred cccCCHHHHHhhCCEEEECCCCCchhhcCcC-HHHHhcCCCCeEEEECCCccccCHHHH
Confidence 113578999999999999988743 333 34 456678888889999865 6665544
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.007 Score=61.38 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=71.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHH-HhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L-~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-+..+++.| ...|.+|.+|||...... . ..
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-----------------------~~ 187 (332)
T PRK08605 143 SIKDLKVAVIGTG----------RIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-----------------------TY 187 (332)
T ss_pred eeCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCccHhH--H-----------------------hh
Confidence 4678999999974 4778899999 567999999999865421 1 11
Q ss_pred eEEecCHHhhcccccEEEEEecCccccc-ccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+....+++++++++|+|+++++...... +--..+.+.|++..++||+.+ +.+..
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~ 244 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK 244 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHH
Confidence 3345689999999999999988765332 211346778888889999866 44443
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.004 Score=56.69 Aligned_cols=53 Identities=28% Similarity=0.531 Sum_probs=43.6
Q ss_pred cEEEEECCChh-HHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|.| |.++|..|.++ |.+|++.+++.+ ++.+.+.++|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99999999998 889999998631 2234588999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999998876
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0058 Score=64.14 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=52.5
Q ss_pred cEEEEECCChhHHH--HHHHHHHc---CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGP--TMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||.|.. .+ +...|++. .++-+|+++|+|+++.+.+.+- ..+.+++. ..-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eA 71 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEA 71 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHH
Confidence 89999999986 32 33344432 2467999999999988764420 01111111 12357889999999
Q ss_pred hccCcEEEEecc
Q 011641 76 VSEADIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+++||+||.++-
T Consensus 72 l~gADfVi~~ir 83 (437)
T cd05298 72 FTDADFVFAQIR 83 (437)
T ss_pred hCCCCEEEEEee
Confidence 999999999875
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=50.14 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=49.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|.|+|.|.+|..++..|.+. +.+|+++|.++++++.+.+...++. ++.-.+.+.+ .-+++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~-------------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER-------------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH-------------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh-------------cCccccCE
Confidence 67999999999999999996 7799999999999999886433221 1111111111 12578999
Q ss_pred EEEecc
Q 011641 82 VFVSVN 87 (480)
Q Consensus 82 Vii~Vp 87 (480)
++++++
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 999965
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.013 Score=60.49 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=73.1
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-+..+++.|...|.+|.+|||...... .
T Consensus 111 g~~l~gktvGIIG~G----------~IG~~va~~l~a~G~~V~~~Dp~~~~~~--------------------------~ 154 (381)
T PRK00257 111 GVDLAERTYGVVGAG----------HVGGRLVRVLRGLGWKVLVCDPPRQEAE--------------------------G 154 (381)
T ss_pred CCCcCcCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 346789999999984 4678999999999999999999532110 0
Q ss_pred ceEEecCHHhhcccccEEEEEecCc------ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWD------EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~------~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
... ..++++.++++|+|+++++.. .+.=++-+ ..+.|++.+++|++-+ ++|.+.+.
T Consensus 155 ~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~-~l~~mk~gailIN~aRG~vVde~AL~ 218 (381)
T PRK00257 155 DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA-FLASLRPGAWLINASRGAVVDNQALR 218 (381)
T ss_pred Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH-HHhcCCCCeEEEECCCCcccCHHHHH
Confidence 111 247899999999999999873 33335544 5677888779999765 77765554
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0095 Score=63.15 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=83.5
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. .....++..|.++|.+|.+||...+..+...+... +.+ ..+..++
T Consensus 2 ~~IgvIGLG----------~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~--------------~~g--~~i~~~~ 55 (470)
T PTZ00142 2 SDIGLIGLA----------VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK--------------EGN--TRVKGYH 55 (470)
T ss_pred CEEEEEeEh----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh--------------hcC--CcceecC
Confidence 379999985 58899999999999999999986554322111000 000 1244567
Q ss_pred CHHhhcc---cccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecCCCCc
Q 011641 405 DAYEATK---DAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGKPLDP 471 (480)
Q Consensus 405 ~~~~a~~---~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~~~~~ 471 (480)
++.++++ .+|+|++++...+.-+--.+.+...+.+..+|||+.+.... ..+++.|+.|.+.|..+-+
T Consensus 56 s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 56 TLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred CHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 8888886 48999999777654332235677777766799999998753 3455679999988765443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0062 Score=60.74 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=66.6
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... .++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~----------------------~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA----------------------DGF 60 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH----------------------cCC
Confidence 468999999998 478999999999999999999754332222221 123
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
+. .++.++++.+|+|+++.+.++=+++=...+...|++..+++=.
T Consensus 61 ~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 61 EV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC
Confidence 33 3899999999999999987554443225677888776555433
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0092 Score=59.14 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-++.+++|+|+|.+- ....+++..|.++|++|.+|+-..
T Consensus 143 p~aii~lL-~~~~i~l~Gk~V~vIG~s~---------ivG~PmA~~L~~~gatVtv~~~~t------------------- 193 (301)
T PRK14194 143 PSGCLRLL-EDTCGDLTGKHAVVIGRSN---------IVGKPMAALLLQAHCSVTVVHSRS------------------- 193 (301)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEECCCC-------------------
Confidence 33444433 3334478999999999642 578999999999999999986432
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||+||.++..+.+-.-+| +++..+|||.-
T Consensus 194 -----------------~~l~e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 194 -----------------TDAKALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred -----------------CCHHHHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 256788899999999999998654333 45567999986
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0051 Score=60.56 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=54.6
Q ss_pred cEEEEECCChh-HHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|.+ |.|+|..|.++ |..|+++... |.|+.+.++.||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999998877 99999999988 8999986431 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++++|.- +. ...++++.+||+.+
T Consensus 204 IVV~avG~~~~--------------i~------~~~ik~gavVIDVG 230 (285)
T PRK14189 204 IVVAAVGKRNV--------------LT------ADMVKPGATVIDVG 230 (285)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999997631 11 15678999998754
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0063 Score=66.76 Aligned_cols=73 Identities=14% Similarity=0.317 Sum_probs=53.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+.. +..-.+.+++ .-+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA-------------AGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh-------------cCCccC
Confidence 4689999999999999999988 9999999999999999886433332 2221221111 125689
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|.++++++++
T Consensus 466 ~~vv~~~~d~ 475 (601)
T PRK03659 466 EAIVITCNEP 475 (601)
T ss_pred CEEEEEeCCH
Confidence 9999997753
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0064 Score=63.62 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=52.9
Q ss_pred cEEEEECCChh-HHHHHHHHHHc---CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYV-GGPTMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
|||+|||.|.. .-.+...|++. .++.+|+++|+|+++.+.+.+- ...++++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 22233444432 2567999999999987764320 01111111 113578899999999
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999998653
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=58.54 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=28.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSR 38 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~ 38 (480)
+||||||+|.+|..++..+.+. ++.++. ++|+|++.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es 41 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPES 41 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhh
Confidence 5799999999999988777763 467765 67898864
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0087 Score=61.70 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=57.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCC-CCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCC-CEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK-NLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~a 79 (480)
.+++|||+|..+......++...+ -.+|.+|++++++.+++.+... ...... .+..+++.++++++|
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~-----------~~~~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVA-----------ETYPQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------HhcCCCceEEEeCCHHHHHcCC
Confidence 469999999999999998887433 3589999999999888764210 000001 266789999999999
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|+.|+++
T Consensus 225 DIVvtaT~s 233 (379)
T PRK06199 225 DIVTYCNSG 233 (379)
T ss_pred CEEEEccCC
Confidence 999999764
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.008 Score=59.94 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=75.6
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....++..|.++|.+|.+||+.....+...+ .+...+.
T Consensus 2 ~~Ig~IGlG~----------mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----------------------~g~~~~~ 49 (296)
T PRK15461 2 AAIAFIGLGQ----------MGSPMASNLLKQGHQLQVFDVNPQAVDALVD----------------------KGATPAA 49 (296)
T ss_pred CeEEEEeeCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------cCCcccC
Confidence 3799999865 7899999999999999999986543322111 1244567
Q ss_pred CHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+. .+..- .+.+...+++..+|+|+..+... +.+.+.|+.|..
T Consensus 50 s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld 118 (296)
T PRK15461 50 SPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD 118 (296)
T ss_pred CHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 88899999999999998874 33221 12344455556699999888764 234456777754
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.008 Score=62.70 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=73.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|++ +-+..+++.|...|.+|.+|||..... ....
T Consensus 148 ~L~gktvGIiG~G----------~IG~~vA~~~~~fGm~V~~~d~~~~~~--------------------------~~~~ 191 (409)
T PRK11790 148 EVRGKTLGIVGYG----------HIGTQLSVLAESLGMRVYFYDIEDKLP--------------------------LGNA 191 (409)
T ss_pred cCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCCcccc--------------------------cCCc
Confidence 4689999999984 568899999999999999999963210 0123
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+..++++.++.+|+|+++.+..+ -++ ++- +..+.|++.+++|.+-+ ++|.+.+
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~~vde~aL 249 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGA-EELALMKPGAILINASRGTVVDIDAL 249 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCH-HHHhcCCCCeEEEECCCCcccCHHHH
Confidence 455689999999999999988743 333 344 45678888889999864 7776544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.017 Score=61.66 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=65.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEE-EecCH------
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLF-FSTDV------ 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~-~t~d~------ 72 (480)
.||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-+..+. +..-++.. ..+..+ .+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHH
Confidence 3799999999999887777776 8899999999999998876332211 11000000 000011 11121
Q ss_pred --HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 73 --EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 --~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.++++|++|.|+..|... .+ ..+.++....++++.+|++.+.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~-------aP-----~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKP-------AP-----KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCccc-------Cc-----chHHHHHHHhcCCCCEEEEEcc
Confidence 12235799999998765321 11 1123556667778888876553
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=58.99 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=75.8
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++++|+|+. .-...+++.|..-|.+|.+|||.-.++ ...++ +
T Consensus 142 ~~l~gktvGIiG~G----------rIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~~----------------------~ 188 (324)
T COG1052 142 FDLRGKTLGIIGLG----------RIGQAVARRLKGFGMKVLYYDRSPNPE-AEKEL----------------------G 188 (324)
T ss_pred cCCCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCCChH-HHhhc----------------------C
Confidence 46789999999974 567999999999999999999987632 22221 2
Q ss_pred eEEecCHHhhcccccEEEEEecC-cc-cccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEW-DE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~-~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+|.+ +++.++.+|.|++..+- ++ +.=++-+ ..+.|++..++|.+-+ ++|.+.+-
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~-~l~~mk~ga~lVNtaRG~~VDe~ALi 247 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLTPETRHLINAE-ELAKMKPGAILVNTARGGLVDEQALI 247 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHH-HHHhCCCCeEEEECCCccccCHHHHH
Confidence 55665 99999999999998876 33 3335554 4568888888998865 77765443
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0097 Score=61.48 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=75.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEEcCCCChHHHH--HhhhccccCCCCCCCCCCCCcccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL-GDKARLSIYDPQVTEDQIQ--RDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+.+++|+|+|+. +-...+++.|. .-|++|.+|||....+... ..++ ..+. ......
T Consensus 162 ~L~gktvGIiG~G----------~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~-------~~~~~~ 221 (386)
T PLN02306 162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLK-------ANGEQP 221 (386)
T ss_pred CCCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccc-------cccccc
Confidence 4689999999984 46788999985 7899999999987532110 0110 0000 000000
Q ss_pred cceEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..+.+..++++.++.+|+|+++.+... -++ ++- +..+.|++.+++|++-+ ++|.+.+-
T Consensus 222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~-~~l~~MK~ga~lIN~aRG~lVDe~AL~ 283 (386)
T PLN02306 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINK-ERLALMKKEAVLVNASRGPVIDEVALV 283 (386)
T ss_pred ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCH-HHHHhCCCCeEEEECCCccccCHHHHH
Confidence 112334689999999999999888743 223 454 45578998889999865 77865543
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.054 Score=52.28 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 64 KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.|+++++|++|+-+|-. . .. ..+++.+.+++++|.+|....|+|+-. +..++++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG--~------~t------~~Iikki~~~ipEgAII~~tCTIpt~~---ly~~le~ 189 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKG--G------MQ------PDIIEKFADDIKEGAIVTHACTIPTTK---FAKIFKD 189 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCCHHH---HHHHHHH
Confidence 35678888788899999999996632 1 11 357899999999999999888887654 4445554
Q ss_pred cCCCCceEE-eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 144 NSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
.++ .++.+ .|+|-- .||.. .+..+|. ...+++..+++-+|-++..
T Consensus 190 l~R-~DvgIsS~HPaa-VPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~ 235 (342)
T PRK00961 190 LGR-DDLNVTSYHPGA-VPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR 235 (342)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC
Confidence 332 23333 356642 23221 1233332 2346888899888888875
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0043 Score=56.48 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=65.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCC----h-----HHHHhhhcCCCEEEecCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPG----L-----DGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~----l-----~~~~~~~~~~~l~~t~d~ 72 (480)
.||.|+|.|.+|..-+..+... |++|+.+|.++++.+++........+.. . +..... .........+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f 96 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYY--EHPESYESNF 96 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH--HHCCHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhh--HHHHHhHHHH
Confidence 5899999999999999999887 9999999999998888775322111000 0 000000 0000011234
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.++.+|+||.+.--+... .| .-+.++..+.++++.+|++-|.
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEEe
Confidence 55678899999876543221 22 1233455566788999988653
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.04 Score=58.23 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 5799999999999999999998 99999999985
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0072 Score=62.53 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=54.5
Q ss_pred cEEEEECCChhHHHHHH--HHHH--cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|..+.+--. .+.+ ..++.++.++|+++++.+.+..- .+.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~--------~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--------AKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEecCHHHHh
Confidence 58999999999987543 2222 13678999999999987743320 11222221 123478899999999
Q ss_pred ccCcEEEEecc
Q 011641 77 SEADIVFVSVN 87 (480)
Q Consensus 77 ~~aDvVii~Vp 87 (480)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999974
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=58.61 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=74.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.....+.... .+...+++
T Consensus 2 ~Ig~IGlG----------~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~s 49 (299)
T PRK12490 2 KLGLIGLG----------KMGGNMAERLREDGHEVVGYDVNQEAVDVAGK----------------------LGITARHS 49 (299)
T ss_pred EEEEEccc----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 68999974 47899999999999999999986433221111 13455678
Q ss_pred HHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 406 AYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
+++.+++ +|+|+++++.+ ..+++ ++.+...+++..+|||+.+.-... .+++.|+.|..
T Consensus 50 ~~~~~~~~~~advVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 50 LEELVSKLEAPRTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHHHhCCCCCEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 8887766 69999999998 44442 345666676666999998876532 33456887765
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0088 Score=58.96 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=44.1
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|. +|.++|..|..+ |..|+.+++.. .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999998631 13445688999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999876
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0075 Score=60.77 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=72.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||...... .
T Consensus 145 ~l~gktvgIiG~G----------~IG~~vA~~l~~fgm~V~~~~~~~~~~~----------------------------~ 186 (317)
T PRK06487 145 ELEGKTLGLLGHG----------ELGGAVARLAEAFGMRVLIGQLPGRPAR----------------------------P 186 (317)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHhhCCCEEEEECCCCCccc----------------------------c
Confidence 3579999999974 5778999999999999999998643210 1
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
. ..++++.++.+|+|+++.+.. +-++ ++- +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 187 ~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~-~~~~~mk~ga~lIN~aRG~vVde~AL~ 244 (317)
T PRK06487 187 D-RLPLDELLPQVDALTLHCPLTEHTRHLIGA-RELALMKPGALLINTARGGLVDEQALA 244 (317)
T ss_pred c-ccCHHHHHHhCCEEEECCCCChHHhcCcCH-HHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1 137899999999999998873 3344 454 45678898889999865 88865443
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=59.01 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=66.7
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+...++
T Consensus 3 ~~IgviG~G~----------mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~ 50 (296)
T PRK11559 3 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----------------------AGAETAS 50 (296)
T ss_pred ceEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999754 6788999999999999999986543221111 1245567
Q ss_pred CHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCC
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~ 451 (480)
++.++++++|+|+++++-+. .+..- .+.+...+++..+|+|+..+..
T Consensus 51 ~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 51 TAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 88999999999999987543 22210 1234555666679999988775
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=58.03 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=75.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.-...+...+ .+.....+
T Consensus 2 ~Ig~IGlG----------~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~~ 49 (301)
T PRK09599 2 QLGMIGLG----------RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----------------------EGATGADS 49 (301)
T ss_pred EEEEEccc----------HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 79999974 47899999999999999999997443222111 23456677
Q ss_pred HHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 406 AYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
+.+.++. +|+|++++..+ ..++. ++.+...+++..+|||+.+.... +.+++.|+.|...
T Consensus 50 ~~e~~~~~~~~dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 50 LEELVAKLPAPRVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred HHHHHhhcCCCCEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence 8877765 69999999887 33332 34566666666699999887653 3345668888654
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.007 Score=60.79 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=72.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|++|.+|||......- + ...
T Consensus 133 ~l~g~tvgIvG~G----------~IG~~vA~~l~afG~~V~~~~~~~~~~~~---~---------------------~~~ 178 (312)
T PRK15469 133 HREDFTIGILGAG----------VLGSKVAQSLQTWGFPLRCWSRSRKSWPG---V---------------------QSF 178 (312)
T ss_pred CcCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEeCCCCCCCC---c---------------------eee
Confidence 4678999999984 57789999999999999999985432110 0 001
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.-..+++++++++|+|+++.+..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~vVde~aL 236 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIIN-QQLLEQLPDGAYLLNLARGVHVVEDDL 236 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhH-HHHHhcCCCCcEEEECCCccccCHHHH
Confidence 113578999999999999988754 223 33 456778988889999865 7776544
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=60.87 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=66.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|||+|.+|.++|..|.+. |++|+++|++++...... .+. . ....+.+....++|+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~~~~~~-------------~~~----~--~~~~~~~~~~~~~dl 62 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEALQSCP-------------YIH----E--RYLENAEEFPEQVDL 62 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccccchhH-------------HHh----h--hhcCCcHHHhcCCCE
Confidence 5799999999999999999998 899999998765432110 000 0 011222333467998
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHH-hh--CCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIA-DV--SKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~-~~--l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
||.+.+.+. +...++.+.+ .++ .. .....+|-+..|..-.||.. +..+|+..+
T Consensus 63 vV~s~gi~~-----------~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g 128 (418)
T PRK00683 63 VVRSPGIKK-----------EHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG 128 (418)
T ss_pred EEECCCCCC-----------CcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 888865442 1223333332 111 11 11345676777776666655 677787643
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.014 Score=54.28 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=51.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE--ecC---HHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STD---VEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d---~~~a 75 (480)
+++.|+|. |.+|..++..|++. |++|++++|+.++.+.+.+.... ..+ ..+.. ..+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~~--~~~----------~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLRA--RFG----------EGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHh--hcC----------CcEEEeeCCCHHHHHHH
Confidence 57999995 99999999999998 89999999999988776542100 000 01111 122 2356
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
++++|+||.++|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999987644
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.063 Score=51.90 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 64 KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.|+++++|++|+-+|-. . .. ..+++.+.+++++|.+|....|+|+-. +..+++.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG--~------~q------~~Iikkii~~lpEgAII~~tCTIpt~~---ly~ilE~ 187 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKG--N------KQ------PDIIKKFIDDIPEGAIVTHACTIPTTK---FAKIFED 187 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCChHH---HHHHHHh
Confidence 35678888788899999999996632 1 11 357899999999999999888887654 3444544
Q ss_pred cCCCCceEE-eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 144 NSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
.++ .++.+ .|+|-- .||.. .. ..++- ...+++..+++-+|-++..
T Consensus 188 l~R-~DvgVsS~HPaa-VPgt~-----~q-~Yi~e---gyAtEEqI~klveL~~sa~ 233 (340)
T TIGR01723 188 LGR-EDLNVTSYHPGC-VPEMK-----GQ-VYIAE---GYASEEAVNKLYELGKKAR 233 (340)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-----Cc-eEeec---ccCCHHHHHHHHHHHHHhC
Confidence 332 23333 356642 34332 11 12222 2336888999888888875
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=57.60 Aligned_cols=104 Identities=21% Similarity=0.372 Sum_probs=72.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE--Ee--cCHHHhhcc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF--FS--TDVEKHVSE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~--~t--~d~~~a~~~ 78 (480)
||+|||.|.+|+--|....-. |-+|+..|+|.+++.++..- . .+++. .+ .++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~------------f----~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDL------------F----GGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHh------------h----CceeEEEEcCHHHHHHHhhh
Confidence 799999999999888776665 89999999999988776531 0 12322 11 246677899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|++|=+|=.|-.. .| +-+.+++.+.++++.+||+-.-=..|+.+.
T Consensus 232 aDlvIgaVLIpgak-------aP-----kLvt~e~vk~MkpGsVivDVAiDqGGc~Et 277 (371)
T COG0686 232 ADLVIGAVLIPGAK-------AP-----KLVTREMVKQMKPGSVIVDVAIDQGGCFET 277 (371)
T ss_pred ccEEEEEEEecCCC-------Cc-----eehhHHHHHhcCCCcEEEEEEEcCCCceec
Confidence 99999888666432 23 235677788899999998754323344333
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.016 Score=57.97 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHH---HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI---NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v---~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+|+|-| .|++|..+...|.++ ||.|.+.=|+++.- +.|.+-. +..+.+. +....+.-..+..++++
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~------~a~~~l~-l~~aDL~d~~sf~~ai~ 77 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLE------GAKERLK-LFKADLLDEGSFDKAID 77 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcc------cCcccce-EEeccccccchHHHHHh
Confidence 7899999 599999999999999 99999999988752 2233210 0000000 00123444567788999
Q ss_pred cCcEEEEeccCCCCC
Q 011641 78 EADIVFVSVNTPTKT 92 (480)
Q Consensus 78 ~aDvVii~Vptp~~~ 92 (480)
+||.||=+ -+|.+.
T Consensus 78 gcdgVfH~-Asp~~~ 91 (327)
T KOG1502|consen 78 GCDGVFHT-ASPVDF 91 (327)
T ss_pred CCCEEEEe-CccCCC
Confidence 99988744 355544
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.055 Score=50.85 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.||...+..|.+. |++|++++.+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 5799999999999999999998 89999998653
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.029 Score=49.41 Aligned_cols=79 Identities=18% Similarity=0.048 Sum_probs=60.5
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|-+ +.-..+++..|.++|++|.+.+-..
T Consensus 22 ~~~~~~gk~v~VvGrs---------~~vG~pla~lL~~~gatV~~~~~~t------------------------------ 62 (140)
T cd05212 22 EGVRLDGKKVLVVGRS---------GIVGAPLQCLLQRDGATVYSCDWKT------------------------------ 62 (140)
T ss_pred cCCCCCCCEEEEECCC---------chHHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 4457899999999954 3778899999999999999977422
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+++++||.||.+|..+.+ ++.+. +++..+|+|.-
T Consensus 63 ------~~l~~~v~~ADIVvsAtg~~~~--i~~~~----ikpGa~Vidvg 100 (140)
T cd05212 63 ------IQLQSKVHDADVVVVGSPKPEK--VPTEW----IKPGATVINCS 100 (140)
T ss_pred ------cCHHHHHhhCCEEEEecCCCCc--cCHHH----cCCCCEEEEcC
Confidence 1457789999999999999965 44433 34456777764
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.016 Score=61.62 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
-.+|+++||+ .....++..|.++|++|.+||...+..+...+.. ...+. ..+..+
T Consensus 6 ~~~IG~IGLG----------~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~--------------~~~Ga-~~~~~a 60 (493)
T PLN02350 6 LSRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERA--------------KKEGN-LPLYGF 60 (493)
T ss_pred CCCEEEEeeH----------HHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh--------------hhcCC-cccccC
Confidence 3579999996 4889999999999999999998655433221100 00000 113356
Q ss_pred cCHHhhccc---ccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecC
Q 011641 404 WDAYEATKD---AHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGK 467 (480)
Q Consensus 404 ~~~~~a~~~---ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~ 467 (480)
.++.++++. +|+|+++...++--+--++.+...+.+..+|||+.+.... +.+++.|+.|.+.|.
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapV 133 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGV 133 (493)
T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCC
Confidence 788888876 9999999988763321224566777666699999999743 345567999988865
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0059 Score=66.45 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=51.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHH-hhccC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEK-HVSEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (480)
+|.|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++...+.. +..-++. +++ -++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~--------------L~~a~i~~a 482 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRERGIRAVLGNAANEEI--------------MQLAHLDCA 482 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHH--------------HHhcCcccc
Confidence 588999999999999999998 9999999999999999886332221 1111111 111 25689
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+++++++
T Consensus 483 ~~viv~~~~ 491 (558)
T PRK10669 483 RWLLLTIPN 491 (558)
T ss_pred CEEEEEcCC
Confidence 999999764
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.029 Score=56.01 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=76.1
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
....+.++||+|+|..- -+..++..|.+.|++|.+||...........++ .
T Consensus 146 ~~~~l~g~kvlViG~G~----------iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G---~---------------- 196 (296)
T PRK08306 146 TPITIHGSNVLVLGFGR----------TGMTLARTLKALGANVTVGARKSAHLARITEMG---L---------------- 196 (296)
T ss_pred CCCCCCCCEEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---C----------------
Confidence 33456789999999743 779999999999999999999854432222221 0
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC---ChhhhhhcCcEEEE
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV---DANKLREIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~---~~~~~~~~g~~y~~ 464 (480)
.....+++.+.++++|.||..+++.. ++ ++..+.|++..+|||.-.-- +-+..++.|....+
T Consensus 197 -~~~~~~~l~~~l~~aDiVI~t~p~~~---i~-~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~ 261 (296)
T PRK08306 197 -SPFHLSELAEEVGKIDIIFNTIPALV---LT-KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL 261 (296)
T ss_pred -eeecHHHHHHHhCCCCEEEECCChhh---hh-HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence 01112456778899999999887643 22 34566788778999986532 22344567776654
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.021 Score=57.02 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=75.0
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.++|.+|.+||......+..... +.....+
T Consensus 2 ~Ig~IGlG----------~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s 49 (298)
T TIGR00872 2 QLGLIGLG----------RMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED----------------------RTTGVAN 49 (298)
T ss_pred EEEEEcch----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----------------------CCcccCC
Confidence 69999984 478899999999999999999865443222211 1112234
Q ss_pred HHh---hcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEecCC
Q 011641 406 AYE---ATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSIGKP 468 (480)
Q Consensus 406 ~~~---a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~iG~~ 468 (480)
+.+ .++.+|+|+++++.+..++. .+.+...+++..+|||+.+..... .+++.|+.|...+-.
T Consensus 50 ~~~~~~~~~~~dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 50 LRELSQRLSAPRVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred HHHHHhhcCCCCEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC
Confidence 444 45678999999999855542 356666666556999999986432 334668888777643
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0091 Score=60.64 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=43.2
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCC---eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+|+| .|++|.-+...|+++ +| ++..+.++.+.-+.+.-+ + ..+.+.......+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~~~-------g----------~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELSFK-------G----------KELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeeeeC-------C----------ceeEEeeCCHHHH
Confidence 68999999 599999999999986 55 446665543321111100 0 1233322111235
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+||+|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 789999999774
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=59.30 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+++|+|+|+. +-...+++.|...|.+|.+||+..... . ...
T Consensus 145 l~gktvgIiG~G----------~IG~~va~~l~~fg~~V~~~~~~~~~~-~--------------------------~~~ 187 (314)
T PRK06932 145 VRGSTLGVFGKG----------CLGTEVGRLAQALGMKVLYAEHKGASV-C--------------------------REG 187 (314)
T ss_pred cCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCcccc-c--------------------------ccc
Confidence 589999999974 567899999999999999999853211 0 001
Q ss_pred EecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..++++.++.+|+|+++.+..+ -++ ++- +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 188 -~~~l~ell~~sDiv~l~~Plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~~Vde~AL~ 244 (314)
T PRK06932 188 -YTPFEEVLKQADIVTLHCPLTETTQNLINA-ETLALMKPTAFLINTGRGPLVDEQALL 244 (314)
T ss_pred -cCCHHHHHHhCCEEEEcCCCChHHhcccCH-HHHHhCCCCeEEEECCCccccCHHHHH
Confidence 2478999999999999988633 333 454 45678898889999855 77765443
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=55.44 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=55.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH---cCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.||.|+|.|.+|.+.|..+..++-..++.++|.++++...-. ++..++. ...++..+.|+.. -++
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~-----------~~~~V~~~~Dy~~-sa~ 88 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFL-----------STPNVVASKDYSV-SAN 88 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccc-----------cCCceEecCcccc-cCC
Confidence 489999999999999988876633468999999998654311 1112221 1246777778764 789
Q ss_pred CcEEEEeccCCCC
Q 011641 79 ADIVFVSVNTPTK 91 (480)
Q Consensus 79 aDvVii~Vptp~~ 91 (480)
++++|++......
T Consensus 89 S~lvIiTAGarq~ 101 (332)
T KOG1495|consen 89 SKLVIITAGARQS 101 (332)
T ss_pred CcEEEEecCCCCC
Confidence 9999999876543
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.015 Score=57.77 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=70.1
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....++..|.+.|.+|.+||+....-+.... .+...+.+
T Consensus 1 ~IgvIG~G~----------mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~~ 48 (291)
T TIGR01505 1 KVGFIGLGI----------MGSPMSINLAKAGYQLHVTTIGPEVADELLA----------------------AGAVTAET 48 (291)
T ss_pred CEEEEEecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCcccCC
Confidence 589999854 7899999999999999999986533222111 12334567
Q ss_pred HHhhcccccEEEEEecCcc-cccc--cHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTL--DYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~--~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
+.++++++|+|+++++-+. .+.. ....+...+++..+|+|+.+..... .+++.|+.|..
T Consensus 49 ~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 49 ARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 8899999999999987642 2221 1122445556667899988766431 23344665544
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.02 Score=51.65 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=49.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-+ .+|.|+|..|.++ |..|+.++... .++++.++.||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~T---------------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSKT---------------------------------KNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TTS---------------------------------SSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCCC---------------------------------Ccccceeeecc
Confidence 589999976 6999999999998 89999987631 34455688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.+++.|..- + ...++++.+||+.++.
T Consensus 82 IVVsa~G~~~~i------------------~--~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 82 IVVSAVGKPNLI------------------K--ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--CE
T ss_pred EEeeeecccccc------------------c--cccccCCcEEEecCCc
Confidence 999999876321 0 2457889999875543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.023 Score=55.93 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=61.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+.+++|+|+|.+ +.-..+++..|.++|++|.++....
T Consensus 152 ~~i~l~Gk~v~vIG~S---------~ivG~Pla~lL~~~gatVtv~~s~t------------------------------ 192 (284)
T PRK14179 152 YNVELEGKHAVVIGRS---------NIVGKPMAQLLLDKNATVTLTHSRT------------------------------ 192 (284)
T ss_pred hCCCCCCCEEEEECCC---------CcCcHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 3446799999999963 3567899999999999999983211
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||+||.++..+.|-.-+| +++..+|||.-
T Consensus 193 ------~~l~~~~~~ADIVI~avg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 193 ------RNLAEVARKADILVVAIGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCccccCCHHH------ccCCcEEEEec
Confidence 256778899999999999999854332 45557999975
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.028 Score=53.39 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=29.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 66 566789887
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.031 Score=54.83 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=55.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh--hcCCCEEE-ecCHHH---h
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFF-STDVEK---H 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~--~~~~~l~~-t~d~~~---a 75 (480)
.||++||.|.+-++.-.....++++..|.++|++++.++.-++ ++.. -...++++ +.|..+ .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~------------lv~~~~~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR------------LVASDLGLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH------------HHH---HH-SSEEEEES-GGGG-GG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH------------HHhhcccccCCeEEEecchhccccc
Confidence 3899999999998655444344345679999999998765432 1110 01234544 334322 2
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.++|+|+++---.. +-..-..+++.+.+.+++|++|+.+|.-
T Consensus 190 l~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp ----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 568899999953321 1123378899999999999999998754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.017 Score=63.61 Aligned_cols=72 Identities=10% Similarity=0.245 Sum_probs=53.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|-|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+++ +..-.+.+++ .-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLES-------------AGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHh-------------cCCCcC
Confidence 4689999999999999999998 8999999999999999987433332 1111111110 125689
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+++|+++
T Consensus 466 ~~vvv~~~d 474 (621)
T PRK03562 466 EVLINAIDD 474 (621)
T ss_pred CEEEEEeCC
Confidence 999999764
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0086 Score=54.88 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=32.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
||+|||+|.+|..+|..|++. |. +++++|.+.-..+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~ 40 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLN 40 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchh
Confidence 689999999999999999998 76 5999999863333344
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.02 Score=60.52 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=38.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 36899999999999999999998 9999999999999988875
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.077 Score=56.79 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=47.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|+|+|..|.+.+..|... |++|+++|.+++..+.+.+.... +.......+.++++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888887 99999999887766555431111 1111112234678899
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.+-.-|
T Consensus 74 VV~SpGi~ 81 (488)
T PRK03369 74 VVTSPGFR 81 (488)
T ss_pred EEECCCCC
Confidence 88875544
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.042 Score=52.57 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=67.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEEC----------CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~----------~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|. |.+.+..+++..-.+.. . .+ .+..
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~--~--------~~-~~~~- 97 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG--F--------PG-AERI- 97 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc--C--------CC-ceec-
Confidence 6899999999999999999998 89998 5676 55555554432111100 0 00 0111
Q ss_pred CHHHh-hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCc
Q 011641 71 DVEKH-VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK 149 (480)
Q Consensus 71 d~~~a-~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.++. -.+||+++-|.++..-. ...+.++ + -.+|+ ++...|-| ....+.|.+.+
T Consensus 98 ~~~~i~~~~~Dvlip~a~~~~i~--------------~~~~~~l----~-a~~I~-egAN~~~t-~~a~~~L~~rG---- 152 (227)
T cd01076 98 TNEELLELDCDILIPAALENQIT--------------ADNADRI----K-AKIIV-EAANGPTT-PEADEILHERG---- 152 (227)
T ss_pred CCccceeecccEEEecCccCccC--------------HHHHhhc----e-eeEEE-eCCCCCCC-HHHHHHHHHCC----
Confidence 11221 13899999997643211 1122222 2 33444 44444444 55667777764
Q ss_pred eEEeeCCcccc
Q 011641 150 FQILSNPEFLA 160 (480)
Q Consensus 150 ~~v~~~Pe~~~ 160 (480)
+.+.|.++.
T Consensus 153 --i~~~PD~~a 161 (227)
T cd01076 153 --VLVVPDILA 161 (227)
T ss_pred --CEEEChHHh
Confidence 567787753
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.064 Score=56.92 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|+|+|..|.++|..|.+. |++|+++|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5899999999999999999998 99999999865
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=56.78 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=71.8
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|.+|.+||.....+.. .. .+...+.+
T Consensus 2 ~Ig~IGlG~----------MG~~ma~~L~~~G~~v~v~~~~~~~~~~-~~----------------------~g~~~~~s 48 (292)
T PRK15059 2 KLGFIGLGI----------MGTPMAINLARAGHQLHVTTIGPVADEL-LS----------------------LGAVSVET 48 (292)
T ss_pred eEEEEccCH----------HHHHHHHHHHHCCCeEEEEeCCHhHHHH-HH----------------------cCCeecCC
Confidence 689999854 7789999999999999999865322221 11 13445678
Q ss_pred HHhhcccccEEEEEecCcc-cccc--cHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTL--DYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~--~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
+.++.+++|.|++++..+. .++. ....+...+.+..+|||+..+-.. +.+++.|..|..
T Consensus 49 ~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 49 ARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8898999999999999873 2221 111233334445699999887754 344566777754
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.11 Score=51.82 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=66.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||+|+|.+|.-+|.++..- |..|++||.-.-.- ...+ -++.+. +.+|++..||+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~-~~~a-------------------~gvq~v-sl~Eil~~ADF 203 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMA-LAEA-------------------FGVQLV-SLEEILPKADF 203 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchH-HHHh-------------------ccceee-eHHHHHhhcCE
Confidence 4689999999999999998876 78899988632111 1111 123433 46788999998
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|-+=+| . .|+++.+.+ ..-...+++|.-||+.|-...=.+..+.+.++.
T Consensus 204 itlH~P--L---------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 204 ITLHVP--L---------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEccC--C---------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 866655 3 233333322 223345788988988764433334456566654
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.1 Score=49.99 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=100.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcC--CCCeEEEEECCHHHHHH-HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+|++||.|+|...++..+...+ ...+++.+-.+...... ++.- +--++.++ .++++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~------------------g~~~~~~n-~~~~~~ 61 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL------------------GVKTVFTN-LEVLQA 61 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC------------------Cceeeech-HHHHhh
Confidence 79999999999999999888761 11234443332111111 2211 11233344 677899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch-HHHHHHHHHhcCCCCceEE-eeCC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHNSKGIKFQI-LSNP 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v-~~~P 156 (480)
+|++++||. |. .+.+++.++.+....+++|+- +--|. ...+...+.... .-+.+ .-.|
T Consensus 62 s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS---~aaG~tl~~l~~~l~~~~--rviRvmpNtp 121 (267)
T KOG3124|consen 62 SDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS---VAAGKTLSSLESKLSPPT--RVIRVMPNTP 121 (267)
T ss_pred ccceeEeec-ch--------------hHHHHhhcCccccccceEEEE---EeecccHHHHHHhcCCCC--ceEEecCCCh
Confidence 999999987 42 246677777776667777762 22333 333444443111 01111 2345
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
+..++|... +..|+. ...+..+.+++++..++. ...+...----.+.+..- =-+....++.-++.-
T Consensus 122 ~~v~eg~sv--------~~~g~~---~~~~D~~l~~~ll~~vG~--~~evpE~~iDavTgLsGS-gPAy~f~~ieaLadG 187 (267)
T KOG3124|consen 122 SVVGEGASV--------YAIGCH---ATNEDLELVEELLSAVGL--CEEVPEKCIDAVTGLSGS-GPAYVFVAIEALADG 187 (267)
T ss_pred hhhhcCcEE--------EeeCCC---cchhhHHHHHHHHHhcCc--ceeCcHHhhhHHhhccCC-cHHHHHHHHHHHhcc
Confidence 556665431 222322 234556888889988752 221110000001111110 112223344455556
Q ss_pred HHHhCCCHHHHHHHhc
Q 011641 237 CEATGANVSQVAFAVG 252 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~ 252 (480)
.-++|+..+.-.+...
T Consensus 188 gVkmGlPr~lA~~laa 203 (267)
T KOG3124|consen 188 GVKMGLPRQLAYRLAA 203 (267)
T ss_pred ccccCCCHHHHHHHHH
Confidence 6677777665555443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.018 Score=58.56 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=32.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.+|.|||+|.+|..+|..|+.. |+ +++++|.+.-....|+
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~ 65 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQ 65 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccC
Confidence 4799999999999999999998 76 8999999863333333
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=56.23 Aligned_cols=71 Identities=25% Similarity=0.392 Sum_probs=55.0
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-|. +|.|+|..|..+ |..|++++.. |.++++.++.||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999888 999999999988 8999998752 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.- +. ...++++++||+.+
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDvG 231 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDVG 231 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEcc
Confidence 99999976531 11 15678899998754
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.022 Score=57.06 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=74.7
Q ss_pred HHhHHhHHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccc
Q 011641 301 KINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNK 380 (480)
Q Consensus 301 ~~N~~~~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~ 380 (480)
.+...||-..-.++.+++. ..+..+|+|+|++. .+-.++..|.+.|.+|.+||+.-. .+....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~G~----------mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~---- 77 (304)
T PLN02256 14 AIDAAQPFDYESRLQEELE-KSRKLKIGIVGFGN----------FGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL---- 77 (304)
T ss_pred cccccCCCChHhHHhHhhc-cCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECccH-HHHHHHc----
Confidence 3444455444455666654 33677999999754 577899999999999999998742 2222221
Q ss_pred cCCCCCCCCCCCCcccccceEEecCHHhhc-ccccEEEEEecCcccccccHHHH-HHhcCCCCEEEEcCCC
Q 011641 381 FDWDHPLHLQPMSPTMVKQVSVVWDAYEAT-KDAHGVCILTEWDEFKTLDYQRI-YDNMQKPAFVFDGRNV 449 (480)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ad~vvi~t~~~~~~~~~~~~~-~~~~~~~~~viD~~~~ 449 (480)
++....+.++.+ .++|+|+++|+-..+.++ ..++ ...+++..+|+|.-.+
T Consensus 78 ------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~v-l~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 78 ------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAV-LRSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred ------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHH-HHhhhhhccCCCCEEEecCCc
Confidence 233456777765 479999999997765442 1233 2334555699999884
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.021 Score=56.28 Aligned_cols=71 Identities=30% Similarity=0.401 Sum_probs=53.7
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-| .+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999988 8999988532 123445688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 203 IvV~AvG~p~~i---------~-----------~~~vk~GavVIDvG 229 (285)
T PRK14191 203 IVCVGVGKPDLI---------K-----------ASMVKKGAVVVDIG 229 (285)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCcEEEEee
Confidence 999999876321 1 23458899988743
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.032 Score=51.60 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=58.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe--cC----HHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD----VEK 74 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d----~~~ 74 (480)
++|+||| ...+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-..| .+ +.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 4799999 578999999999998 89999999764322 111100 0 00111 12 556
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
.++.||+||.+++.|.-. .. ...+++|++||+.++.
T Consensus 123 ~~~~ADIVIsAvG~~~~~--------i~-----------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 123 CLSQSDVVITGVPSPNYK--------VP-----------TELLKDGAICINFASI 158 (197)
T ss_pred HhhhCCEEEEccCCCCCc--------cC-----------HHHcCCCcEEEEcCCC
Confidence 689999999999976310 01 2456789999875543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.19 Score=50.45 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCCh-HHHHHhhhccccCCCCCC
Q 011641 310 FVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTE-DQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~ 387 (480)
.++.....+ +.+.+.+|+|+|.+ ..+..+++.|...| .+|.++|+.... .++...++
T Consensus 165 Av~~a~~~~-~~l~~~~V~ViGaG----------~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------- 223 (311)
T cd05213 165 AVELAEKIF-GNLKGKKVLVIGAG----------EMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------- 223 (311)
T ss_pred HHHHHHHHh-CCccCCEEEEECcH----------HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC----------
Confidence 344444333 34688999999963 46788889998876 679999986543 23333322
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC--CCChhhhhhcCcEEEEe
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLREIGFIVYSI 465 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~~~g~~y~~i 465 (480)
......+++++++.++|+||.+|..+++.++..+.+.....++.+|+|..+ -++++-..-.|+.++-|
T Consensus 224 ----------~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~v 293 (311)
T cd05213 224 ----------GNAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTI 293 (311)
T ss_pred ----------CeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEH
Confidence 011112456788899999999999998733222222222224679999874 24444322235655544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.045 Score=57.33 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec--CHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (480)
+|||+|+|+|.-|.++|..|.+. |++|+++|.++.. +..... +..++ ++.+.. ...+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~-~~~~~~--~~~~~------------~i~~~~g~~~~~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP-EGLAAQ--PLLLE------------GIEVELGSHDDEDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc-cchhhh--hhhcc------------CceeecCccchhcccc
Confidence 47999999999999999999998 9999999987654 111000 00011 111111 11133678
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhC-CCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVS-KSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+|+.+=.-| ++...++.+.+ ++.-.. .+..+|.+..|..-.||-. +..++.+.+
T Consensus 70 ~d~vV~SPGi~-----------~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 70 FDLVVKSPGIP-----------PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCEEEECCCCC-----------CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 99998773333 33334444432 112222 2444777777776655544 567777654
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.1 Score=55.68 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|..|..+|..|+++ |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999988 99999999654
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.048 Score=49.13 Aligned_cols=92 Identities=17% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCC
Q 011641 308 SRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++.+ +..+-++++++|.|+|-+- .-..+|+..|.++|+.|.+.+....
T Consensus 21 ~aii~lL-~~~~~~l~Gk~v~VvGrs~---------~VG~Pla~lL~~~~atVt~~h~~T~------------------- 71 (160)
T PF02882_consen 21 LAIIELL-EYYGIDLEGKKVVVVGRSN---------IVGKPLAMLLLNKGATVTICHSKTK------------------- 71 (160)
T ss_dssp HHHHHHH-HHTT-STTT-EEEEE-TTT---------TTHHHHHHHHHHTT-EEEEE-TTSS-------------------
T ss_pred HHHHHHH-HhcCCCCCCCEEEEECCcC---------CCChHHHHHHHhCCCeEEeccCCCC-------------------
Confidence 3344433 3344468999999999543 4578999999999999999776542
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
++++.++.||.||.++..+.|-.-+ ..++.++|||..--+.
T Consensus 72 -----------------~l~~~~~~ADIVVsa~G~~~~i~~~------~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 72 -----------------NLQEITRRADIVVSAVGKPNLIKAD------WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -----------------SHHHHHTTSSEEEE-SSSTT-B-GG------GS-TTEEEEE--CEEE
T ss_pred -----------------cccceeeeccEEeeeeccccccccc------cccCCcEEEecCCccc
Confidence 3566689999999999999885433 2345579999865444
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.028 Score=57.06 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=34.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
||||.|.|+ |++|..++..|.++ .|++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHHHHHHh
Confidence 789999996 99999999999875 169999999987655444
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.037 Score=56.56 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=48.3
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCC-ChHHHHhhhcCCCEEEe-cCHHHhhc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFS-TDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t-~d~~~a~~ 77 (480)
|+||+|+| .|++|..+...|.++ +..+++++..+++...+......++.+. ++.... ..+.+. .++++ +.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~ 75 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEV-----ADMEVVSTDPEA-VD 75 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCcccccccccccccccccc-----cceEEEeCCHHH-hc
Confidence 36899998 899999999999976 5679999866654432211111111100 000000 113332 34444 68
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||.|+|.
T Consensus 76 ~~DvVf~a~p~ 86 (349)
T PRK08664 76 DVDIVFSALPS 86 (349)
T ss_pred CCCEEEEeCCh
Confidence 99999999874
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.069 Score=56.93 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
+||.|+|+|..|.++|..|.++ |++|+++|++......
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARHK 53 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHHH
Confidence 6799999999999999999998 8999999987665433
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.046 Score=48.19 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=48.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+| ...+|.++|..|.++ |..|+.++.+ |.++++.+++||
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~AD 73 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDAD 73 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 3677777 466777777777776 7777777642 124566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+|+.+++.+.. .+ ...+++|++|++.
T Consensus 74 IVvsAtg~~~~---------i~-----------~~~ikpGa~Vidv 99 (140)
T cd05212 74 VVVVGSPKPEK---------VP-----------TEWIKPGATVINC 99 (140)
T ss_pred EEEEecCCCCc---------cC-----------HHHcCCCCEEEEc
Confidence 99999886521 11 2457899998853
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.044 Score=58.11 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=77.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
.|+|+|+. .....|++.|.++|++|.+||......+...... . .+ ..+....+
T Consensus 1 ~IG~IGLG----------~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--~-------------~g--~~~~~~~s 53 (467)
T TIGR00873 1 DIGVIGLA----------VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--A-------------KG--KKIVGAYS 53 (467)
T ss_pred CEEEEeeH----------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--c-------------CC--CCceecCC
Confidence 37888884 5889999999999999999998654332211100 0 00 11334456
Q ss_pred HHhhc---ccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecCCCC
Q 011641 406 AYEAT---KDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGKPLD 470 (480)
Q Consensus 406 ~~~a~---~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~~~~ 470 (480)
+.+.+ +.+|+|++++..++.-+--.+.+...+.+..+|||+.|.... ..+.+.|+.|.+.|...-
T Consensus 54 ~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 54 IEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 66644 568999999888543222235666666656699999997643 344567999988876443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.49 Score=46.95 Aligned_cols=228 Identities=12% Similarity=0.159 Sum_probs=132.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH----HHHHHcCCCCCcCCChHHHHhhhcCCCEE---EecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR----INAWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~----v~~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.++-++|+|.+..-+|.-+..++ ..++=.+.+-..+ .++++.+.. ++-.+-.+.-+ ..+|+.. +-.+++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~q-l~l~~q~eahr-~leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQ-LYLQGQGEAHR-QLEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCe-EEEEeccHHHH-hhcCceehhHHHhhHH
Confidence 467999999999999999999873 4566667764333 333443321 22222122111 1234443 345677
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhCCC-CcEEEEecCCCcchHHHHHHHHHhcCCCCceE
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKS-DKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-+.+|+|||+. .-.+++++|. +.|+. .++|.+++|+..+. -+...+.+.+ .+..
T Consensus 81 ~~~~dwqtlilav~aD---------------aY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~~--~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPAD---------------AYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKAG--RDAE 141 (431)
T ss_pred HhhchhheEEEEeecH---------------HHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhhC--CCce
Confidence 7777889999999863 2355667663 23333 45666777775442 2333333332 2333
Q ss_pred Eee-----CCccc----cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhh------
Q 011641 152 ILS-----NPEFL----AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK------ 216 (480)
Q Consensus 152 v~~-----~Pe~~----~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|++ +-.+. .|-++..... ..|+.+|+... +....+.+..++...+. ......++..||.--
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkav-KkriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAV-KKRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHH-hHheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 332 11111 1222221111 12577886532 34567889999998753 344556777777421
Q ss_pred --h----------------------------hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 217 --L----------------------------AANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 217 --l----------------------------~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
+ +.-+...-+...+-|++++..++|+..-.+++.++.+
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 0 1122444556788999999999999999999999876
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.037 Score=55.84 Aligned_cols=85 Identities=12% Similarity=0.193 Sum_probs=54.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|.+|..++..+... ++.+|++ .|.+++....+... +...+. ...+...+.....+....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 69999999999999998764 4777665 67777755444431 112211 11100000112346677788998899999
Q ss_pred EEEeccCCC
Q 011641 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999977543
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.047 Score=57.95 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEE--ecCHHHhhc
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (480)
++|.|||+|..|.+ +|..|.++ |++|+++|.+.. ..+.|.+. ++++ ..+. +.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~-~~~~ 65 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDA-ENIK 65 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCH-HHCC
Confidence 57999999999999 79999988 999999998643 22233321 1222 1222 3366
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|. +...++.+.+ ++ ...+++..+|.+..|..-.||.. +..+|+..+
T Consensus 66 ~~d~vv~spgi~~-----------~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 66 DADVVVYSSAIPD-----------DNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 8998887643332 2222332211 12 22333346777777776666554 677887653
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.046 Score=43.73 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++++|+|.|.+|.+++..|.+.+ +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 58999999999999999999862 467777765
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.038 Score=54.69 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=42.2
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|. +|.++|..|.++ |..|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12334468999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999998644
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.05 Score=54.05 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=60.4
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+++++|+|+|=+. ....+++..|.++|++|.+++...
T Consensus 152 ~~i~~~Gk~V~viGrs~---------~mG~PmA~~L~~~g~tVtv~~~rT------------------------------ 192 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSN---------LVGKPMAQLLLAANATVTIAHSRT------------------------------ 192 (296)
T ss_pred hCCCCCCCEEEEEcCCc---------chHHHHHHHHHhCCCEEEEECCCC------------------------------
Confidence 33467999999999332 567899999999999999986321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
.++.++++.||+|+.++..+.+-+-+| +++..+|||.--
T Consensus 193 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------lk~GavVIDvGi 231 (296)
T PRK14188 193 ------RDLPAVCRRADILVAAVGRPEMVKGDW------IKPGATVIDVGI 231 (296)
T ss_pred ------CCHHHHHhcCCEEEEecCChhhcchhe------ecCCCEEEEcCC
Confidence 135677899999999999998644222 455668999753
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.035 Score=55.62 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.7
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++||+||| .||+|.-+...|.++ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 47999999 699999999999987 44454444
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.056 Score=48.65 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|||.|.+|...+..|.+. |++|++++ ++..+.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs--p~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVS--PEICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEc--CccCHHHH
Confidence 4799999999999999999998 99999996 34444443
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.032 Score=50.13 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=63.3
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|- ++-+..++..|..+|.+|.+|.+.-..-+..+..+ . ....+ +. ....+.+...++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~---~-n~~~~---~~-~~l~~~i~~t~d 62 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQIEEINETR---Q-NPKYL---PG-IKLPENIKATTD 62 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT---S-ETTTS---TT-SBEETTEEEESS
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC---C-CCCCC---CC-cccCcccccccC
Confidence 6888885 46789999999999999999999643222111111 0 00101 11 223356778899
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCC-EEEEcCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPA-FVFDGRNV 449 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~-~viD~~~~ 449 (480)
++++++++|.+++.++-..+++ -.+++....+... +|+=++++
T Consensus 63 l~~a~~~ad~IiiavPs~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 63 LEEALEDADIIIIAVPSQAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHHTT-SEEEE-S-GGGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHhCcccEEEecccHHHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999887765 2345554443332 44433444
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.096 Score=53.52 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=33.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+-.++.+...+ ..+|++.|+++++++..++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH
Confidence 6899999999997766555552 3689999999999998876
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.011 Score=55.93 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=44.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
.+|+|||+|.+|..++..+....+|+++++ +|.++++......+ .+ +....++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999986432224788775 79887655321111 11 111234445443 5
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999885
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.019 Score=45.16 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||.|++|+-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998754
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.031 Score=52.91 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=32.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.+|+|||+|.+|..+|..|++. |. +++++|.+.-..+.|+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~ 69 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLN 69 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEecccccc
Confidence 4799999999999999999998 65 5999999843333344
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.014 Score=58.62 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEECCHHHHHH----HHcCCCC-CcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEEEec
Q 011641 12 VGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSV 86 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~V 86 (480)
||..+|..+..+ |++|++.|.|..-++. +..+..+ ..-..+...-..-...+++-+.|..+ ++++|+++-+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 788999999998 9999999999765442 1111000 00000000000000123556677765 89999995543
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcch
Q 011641 87 NTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKT 133 (480)
Q Consensus 87 ptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt 133 (480)
.-|++...+++.+|.+..+++.+. .+.|+.+...
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~ 112 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINV 112 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCcceeeeccccCChHH
Confidence 346777889999999999998876 5667776654
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.052 Score=56.77 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=68.6
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc------cccc
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT------MVKQ 399 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 399 (480)
+|+|+|+.| ..+.++..|.+.|.+|.+||+.-..-+. +. ...-|+.. +.-.. ....
T Consensus 2 kI~vIGlG~----------~G~~lA~~La~~G~~V~~~d~~~~~v~~---l~----~g~~~~~e-~~l~~~~~~~~~~g~ 63 (411)
T TIGR03026 2 KIAVIGLGY----------VGLPLAALLADLGHEVTGVDIDQEKVDK---LN----KGKSPIYE-PGLDELLAKALAAGR 63 (411)
T ss_pred EEEEECCCc----------hhHHHHHHHHhcCCeEEEEECCHHHHHH---hh----cCCCCCCC-CCHHHHHHHhhhcCC
Confidence 799999988 6799999999999999999985443221 11 00111100 00000 0122
Q ss_pred eEEecCHHhhcccccEEEEEecCccc--cccc-------HHHHHHhcCCCCEEEEcCCCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEF--KTLD-------YQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~--~~~~-------~~~~~~~~~~~~~viD~~~~~ 450 (480)
++...++.++++++|+++++++.+.- ..+| .+.+...+++..+|+|...+.
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 67778888999999999999998742 1122 234555566667899977543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.049 Score=53.66 Aligned_cols=71 Identities=21% Similarity=0.397 Sum_probs=54.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 689999999999988 8899988631 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- + ...+++|.+||+.+
T Consensus 204 IvI~AvG~p~~i---------~-----------~~~ik~gavVIDvG 230 (284)
T PRK14190 204 ILIVAVGKPKLI---------T-----------ADMVKEGAVVIDVG 230 (284)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCCEEEEee
Confidence 999999876311 1 23567899998743
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.047 Score=53.76 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=54.7
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||-|. +|.|+|..|..+ |..|++++.. |.++.+..++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999888 999999999988 8999998741 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++-|.-. . ...++++++||+.++
T Consensus 210 Ivv~AvG~p~~i---------~-----------~~~vk~gavVIDvGi 237 (287)
T PRK14176 210 ILVVATGVKHLI---------K-----------ADMVKEGAVIFDVGI 237 (287)
T ss_pred EEEEccCCcccc---------C-----------HHHcCCCcEEEEecc
Confidence 999998866311 0 136788999987543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.076 Score=51.88 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=66.6
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEE-cCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----RLSIY-DPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|+ ...+..+++.|.+.|. +|.+| |+.-...+.... .++
T Consensus 2 kI~~IG~----------G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----------------------~g~ 49 (266)
T PLN02688 2 RVGFIGA----------GKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS----------------------LGV 49 (266)
T ss_pred eEEEECC----------cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------cCC
Confidence 6889886 3578899999999998 89999 774333221111 235
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
....+..++++++|+|+++++-+.+++. +..+...+.+..+||..-.-.+.+.+++
T Consensus 50 ~~~~~~~e~~~~aDvVil~v~~~~~~~v-l~~l~~~~~~~~~iIs~~~g~~~~~l~~ 105 (266)
T PLN02688 50 KTAASNTEVVKSSDVIILAVKPQVVKDV-LTELRPLLSKDKLLVSVAAGITLADLQE 105 (266)
T ss_pred EEeCChHHHHhcCCEEEEEECcHHHHHH-HHHHHhhcCCCCEEEEecCCCcHHHHHH
Confidence 5677888889999999999965444442 2344444454557787756566666553
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.025 Score=52.32 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=61.7
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc------ccc
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM------VKQ 399 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 399 (480)
||+|+|+.| -.+.++-.|.++|.+|..||..-..-+... .+.-|+.. |.-... ..+
T Consensus 2 ~I~ViGlGy----------vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~-------~g~~p~~E-~~l~~ll~~~~~~~~ 63 (185)
T PF03721_consen 2 KIAVIGLGY----------VGLPLAAALAEKGHQVIGVDIDEEKVEALN-------NGELPIYE-PGLDELLKENVSAGR 63 (185)
T ss_dssp EEEEE--ST----------THHHHHHHHHHTTSEEEEE-S-HHHHHHHH-------TTSSSS-C-TTHHHHHHHHHHTTS
T ss_pred EEEEECCCc----------chHHHHHHHHhCCCEEEEEeCChHHHHHHh-------hccccccc-cchhhhhcccccccc
Confidence 899999999 679999999999999999998654322221 11123211 000000 145
Q ss_pred eEEecCHHhhcccccEEEEEecCccccc--ccH-------HHHHHhcCCCCEEEEcCCCCCh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKT--LDY-------QRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~--~~~-------~~~~~~~~~~~~viD~~~~~~~ 452 (480)
+.+.++.+++++++|+++|+++-|.-.+ .|. +.+...+++..+|+ .+.-+.+
T Consensus 64 l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp 124 (185)
T PF03721_consen 64 LRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP 124 (185)
T ss_dssp EEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred chhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence 7888999999999999999987765432 333 35555556554444 4554443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.11 Score=49.04 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=45.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec---CHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST---DVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~~ 77 (480)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .++.+.+. ++++... +.. .+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~-dl~ 68 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDAD-ILE 68 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHH-HhC
Confidence 4799999999999999999998 899999987643 23333321 2232211 222 378
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++++||.|++
T Consensus 69 ~~~lVi~at~ 78 (205)
T TIGR01470 69 GAFLVIAATD 78 (205)
T ss_pred CcEEEEECCC
Confidence 8999998854
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.1 Score=53.14 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=44.7
Q ss_pred cEEEEECCChhHHHHHHHHHHc--------CCCCeEE-EEECC----------HHHHHHHHcCCCCCcCCChHHHHhhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDIS----------VSRINAWNSDQLPIYEPGLDGVVKQCR 62 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~----------~~~v~~l~~~~~~~~e~~l~~~~~~~~ 62 (480)
+||+|+|+|.||..++..|.++ +.+.+|. ++|++ .+++..+.+....+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~--~-------- 72 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD--Y-------- 72 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc--C--------
Confidence 6899999999999999998754 1135554 45643 3333333221100000 0
Q ss_pred CCCEEEecCHHHhh--ccCcEEEEeccCC
Q 011641 63 GKNLFFSTDVEKHV--SEADIVFVSVNTP 89 (480)
Q Consensus 63 ~~~l~~t~d~~~a~--~~aDvVii~Vptp 89 (480)
.....+.++++.+ .+.|+|+.|+|+.
T Consensus 73 -~~~~~~~d~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 73 -PEGGGEISGLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred -ccccccCCHHHHhhccCCCEEEECCcCc
Confidence 0011234777766 3689999998764
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.15 Score=54.18 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=33.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+||.|||+|..|.+.|..|.+. |++|+++|........+.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l~ 49 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKAA 49 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHHH
Confidence 4799999999999998888888 999999998755444343
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.041 Score=51.64 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=32.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.-..+.|+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchh
Confidence 4799999999999999999998 75 8999998743333333
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.14 Score=55.02 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|+|+|..|.++|..|.++ |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999988 99999999754
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.038 Score=54.54 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=62.8
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.- .+..++..|.++|.+|.+||+.....+.....+ .+....+
T Consensus 2 ~I~IIG~G~----------mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g---------------------~~~~~~~ 50 (279)
T PRK07417 2 KIGIVGLGL----------IGGSLGLDLRSLGHTVYGVSRRESTCERAIERG---------------------LVDEAST 50 (279)
T ss_pred eEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC---------------------CcccccC
Confidence 699999754 678899999999999999998543222111111 1111223
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
..++++++|.||++++-+..... .+++...+++..+|.|...+-
T Consensus 51 ~~~~~~~aDlVilavp~~~~~~~-~~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 51 DLSLLKDCDLVILALPIGLLLPP-SEQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred CHhHhcCCCEEEEcCCHHHHHHH-HHHHHHhCCCCcEEEeCcchH
Confidence 33568899999999997765442 456766666667889987754
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.015 Score=60.49 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999864
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=53.48 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.1
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||+|..|.++|..|.+. |++|+++|..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCC
Confidence 489999999999999999988 99999999764
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.051 Score=53.91 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcc
Q 011641 345 PAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
....+++.|.+.|.+|.+||+.....+...+ .+.....++.++++++|+|++++..+.
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------AGAQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEeCCChH
Confidence 5678999999999999999986543322221 124456788999999999999999854
Q ss_pred -ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 425 -FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 425 -~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
++++- .+.+...+++..+|||+..+-.. +.+++.|+.|..
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 33321 13455556666699999966643 234456777755
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.048 Score=53.57 Aligned_cols=71 Identities=31% Similarity=0.542 Sum_probs=53.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-+ .+|.|+|..|.++ |..|+.+... |.++.+.++.||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs~---------------------------------T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHIF---------------------------------TKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 479999987 9999999999988 8899876431 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 203 IvV~AvGkp~~i---------~-----------~~~vk~gavvIDvG 229 (281)
T PRK14183 203 IVIVGVGKPNLI---------T-----------EDMVKEGAIVIDIG 229 (281)
T ss_pred EEEEecCccccc---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 24577899998754
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.094 Score=51.70 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=60.5
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+.+++|.|+|-+. .-..+|+..|.++|++|.+.+-.
T Consensus 152 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVt~~hs~------------------------------- 191 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSN---------IVGKPMAMLLLQAGATVTICHSK------------------------------- 191 (285)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEecCC-------------------------------
Confidence 33467899999999654 44689999999999999985421
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
..++.+.+++||.||.++..+.| ++. +.+++.++|||.-
T Consensus 192 -----t~~l~~~~~~ADIVV~avG~~~~--i~~----~~ik~gavVIDVG 230 (285)
T PRK14189 192 -----TRDLAAHTRQADIVVAAVGKRNV--LTA----DMVKPGATVIDVG 230 (285)
T ss_pred -----CCCHHHHhhhCCEEEEcCCCcCc--cCH----HHcCCCCEEEEcc
Confidence 12466778999999999999987 343 4456667999975
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.099 Score=47.58 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=61.6
Q ss_pred HHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCc
Q 011641 315 VASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSP 394 (480)
Q Consensus 315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
.+.+...+++++|+|+|.+- .-...+++.|.++|++|.+.+...
T Consensus 35 ~~~~~~~l~gk~vlViG~G~---------~~G~~~a~~L~~~g~~V~v~~r~~--------------------------- 78 (168)
T cd01080 35 LKRYGIDLAGKKVVVVGRSN---------IVGKPLAALLLNRNATVTVCHSKT--------------------------- 78 (168)
T ss_pred HHHcCCCCCCCEEEEECCcH---------HHHHHHHHHHhhCCCEEEEEECCc---------------------------
Confidence 33344578999999999642 236779999999999999877532
Q ss_pred ccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 395 TMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
+++.+.+.+||+||.+|.-+.+ ++.+.+ +...+|||.-.-
T Consensus 79 ---------~~l~~~l~~aDiVIsat~~~~i--i~~~~~----~~~~viIDla~p 118 (168)
T cd01080 79 ---------KNLKEHTKQADIVIVAVGKPGL--VKGDMV----KPGAVVIDVGIN 118 (168)
T ss_pred ---------hhHHHHHhhCCEEEEcCCCCce--ecHHHc----cCCeEEEEccCC
Confidence 2346678999999999998874 554443 445689998543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.054 Score=53.98 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
-||+|+| .||.|.-+...|+.+ |..++....-+.. + . ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~-----------~-----------------~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR-----------K-----------------D-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc-----------c-----------------C-cCCHhHhhcCCC
Confidence 4899999 599999999999987 6666655432211 0 0 012344457899
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999874
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.11 Score=51.15 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=60.8
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+++..|.++|++|.+.....
T Consensus 149 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVtichs~T------------------------------ 189 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSN---------IVGKPLAALLLREDATVTLAHSKT------------------------------ 189 (287)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44467899999999543 567899999999999999865432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 190 ------~~l~~~~~~ADIvIsAvGkp~~i~--~~~v----k~GavVIDVG 227 (287)
T PRK14173 190 ------QDLPAVTRRADVLVVAVGRPHLIT--PEMV----RPGAVVVDVG 227 (287)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEcc
Confidence 245677899999999999999854 3333 4456999975
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.044 Score=54.29 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=51.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe---cCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS---TDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (480)
.++.|||+|-+|.+++..|++. |. +|++++|++++.+.|.+..... ..+... .+..+.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~~--------------~~~~~~~~~~~~~~~~~ 189 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQV--------------GVITRLEGDSGGLAIEK 189 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhhc--------------Ccceeccchhhhhhccc
Confidence 3689999999999999999988 65 7999999999998886521000 011111 12234457
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+||-|+|..
T Consensus 190 ~~DiVInaTp~g 201 (282)
T TIGR01809 190 AAEVLVSTVPAD 201 (282)
T ss_pred CCCEEEECCCCC
Confidence 899999997653
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.029 Score=51.16 Aligned_cols=69 Identities=23% Similarity=0.491 Sum_probs=45.7
Q ss_pred CcEEEEECCChhHHHHHH-HHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGPTMA-VIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~-~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|.++.|||+|++|.+++. .+.++. |++ |-++|++++.+-.-..+ .++++ -++++.-++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~-v~V~~-----------------~d~le~~v~~ 144 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD-VPVYD-----------------LDDLEKFVKK 144 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc-CceEEEEecCCHHHhCcccCC-eeeec-----------------hHHHHHHHHh
Confidence 458999999999999996 455332 666 55799999976432222 33332 123344343
Q ss_pred -cCcEEEEeccC
Q 011641 78 -EADIVFVSVNT 88 (480)
Q Consensus 78 -~aDvVii~Vpt 88 (480)
+.|+.|+|||.
T Consensus 145 ~dv~iaiLtVPa 156 (211)
T COG2344 145 NDVEIAILTVPA 156 (211)
T ss_pred cCccEEEEEccH
Confidence 78999999984
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.059 Score=53.15 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=53.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++++..++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 688999999999987 8899877531 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-. + ...+++|.+||+.+
T Consensus 201 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDVG 227 (287)
T PRK14173 201 VLVVAVGRPHLI---------T-----------PEMVRPGAVVVDVG 227 (287)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999876311 1 24578899998743
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.11 Score=52.41 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=33.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|-+|. +|..+|++. |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999997777 566666632 8999999999999887665
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.045 Score=55.51 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=41.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||||+|+|+ |++|..+...|.++ .|..++..+... +.. |+ ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 478999995 99999999999965 133444455332 211 21 111111 1133322 2233 58
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 66 ~vD~vFla~p~ 76 (336)
T PRK05671 66 QVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEcCCH
Confidence 89999999873
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=54.24 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=29.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||.|||+|..|.+.|..|+++ |++|.++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 799999999999999889988 99999999864
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.054 Score=55.19 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEE-ECC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVV-DIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~-D~~ 35 (480)
|||+|+|+ |++|..++..|..+ +.+++..+ +.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEECh
Confidence 69999995 99999999999886 35788777 554
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.075 Score=45.24 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=59.7
Q ss_pred cEEEEEC----CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+||| -+.+|.-+...|.++ |++|+.++...+.+ .+.++..+++|.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 799999999999997 99999887643211 24667778777337
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+..++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 89999999873 2345666666554 3455666533 3344565555554
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.074 Score=52.86 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=75.8
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++++|+|+.- -.-+++..+..-|..|..|||+.+.+.... .
T Consensus 141 G~el~GKTLgvlG~Gr----------IGseVA~r~k~~gm~vI~~dpi~~~~~~~a-----------------------~ 187 (406)
T KOG0068|consen 141 GWELRGKTLGVLGLGR----------IGSEVAVRAKAMGMHVIGYDPITPMALAEA-----------------------F 187 (406)
T ss_pred eeEEeccEEEEeeccc----------chHHHHHHHHhcCceEEeecCCCchHHHHh-----------------------c
Confidence 4467899999999864 346888899999999999999998765432 2
Q ss_pred ceEEecCHHhhcccccEEEEEecC-cccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEW-DEFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~-~~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
++++. +++|.+..||-+.++++- |+-+++=-++.+..|++...||.+.+ ++|..
T Consensus 188 gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 188 GVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred cceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 35554 789999999999998887 55444333455678888778888754 66654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.02 Score=59.70 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|+|||.|.+|+++|..|+++ |++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 7999999999999999999998 999999999753
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.081 Score=55.97 Aligned_cols=107 Identities=10% Similarity=0.113 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhccc---ccEEEEEecCc
Q 011641 347 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKD---AHGVCILTEWD 423 (480)
Q Consensus 347 ~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---ad~vvi~t~~~ 423 (480)
..++..|.++|++|.+||-.....+..... .+.-.++..++++.+.+++ +|+|+++....
T Consensus 3 ~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~-----------------~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g 65 (459)
T PRK09287 3 KNLALNIASHGYTVAVYNRTPEKTDEFLAE-----------------EGKGKKIVPAYTLEEFVASLEKPRKILLMVKAG 65 (459)
T ss_pred HHHHHHHHhCCCeEEEECCCHHHHHHHHHh-----------------hCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCc
Confidence 568899999999999999865543322110 0001246678899998875 89999999887
Q ss_pred ccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecCCCC
Q 011641 424 EFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGKPLD 470 (480)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~~~~ 470 (480)
+--+--++.+...+.+..+|||+.|.... +.+++.|+.|.+.|..+-
T Consensus 66 ~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG 118 (459)
T PRK09287 66 APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118 (459)
T ss_pred hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCC
Confidence 63332235677777766699999997754 344567999998876443
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.068 Score=53.90 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=65.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++|+|+|+ .+.+..++..|.+.|.+|.++++.-... ..... .+
T Consensus 14 ~L~gktIgIIG~----------GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~----------------------~G 61 (330)
T PRK05479 14 LIKGKKVAIIGY----------GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA----------------------DG 61 (330)
T ss_pred hhCCCEEEEEee----------HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH----------------------CC
Confidence 357899999997 4688999999999999999987653322 11111 12
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
+... +..++++.+|+|+++++-....++-.+.+...+++..+|+=+
T Consensus 62 ~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 62 FEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred CeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 3333 789999999999999987665543325677777655455433
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.1 Score=54.95 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEc--CCCChHHHHHhhhccccCCCCCCCC
Q 011641 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYD--PQVTEDQIQRDLTMNKFDWDHPLHL 389 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+.+++.-+..+.+++|+|+|.+. -...+++.|...|++|.+|| |....+...
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~----------IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~---------------- 295 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD----------VGKGCAQALRGFGARVVVTEIDPICALQAAM---------------- 295 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----------------
Confidence 33444434568999999999753 67889999999999999995 433211110
Q ss_pred CCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 390 QPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
.+..+ .+++++++.+|+|+++|..+.. ++. +..+.|++.+++++.-+.
T Consensus 296 --------~G~~~-~~leell~~ADIVI~atGt~~i--I~~-e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 296 --------EGYQV-VTLEDVVETADIFVTATGNKDI--ITL-EHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --------cCcee-ccHHHHHhcCCEEEECCCcccc--cCH-HHHhccCCCcEEEEcCCC
Confidence 12222 3678899999999999876543 343 445678888899998665
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.068 Score=52.58 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=53.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.++.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987531 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-. . ...+++|.+||+.+
T Consensus 203 IvI~AvG~~~~i---------~-----------~~~vk~GavVIDvG 229 (284)
T PRK14170 203 ILVVATGLAKFV---------K-----------KDYIKPGAIVIDVG 229 (284)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999876311 1 24577899998744
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.14 Score=50.44 Aligned_cols=79 Identities=22% Similarity=0.223 Sum_probs=60.6
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+.+++|.|+|=+- .-..+|+..|.++|++|.+.....
T Consensus 151 ~~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 191 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSN---------IVGKPVAQLLLNENATVTIAHSRT------------------------------ 191 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 567889999999999999976532
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- ..+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvI~AvG~~~~i--~~~~v----k~GavVIDvG 229 (284)
T PRK14170 192 ------KDLPQVAKEADILVVATGLAKFV--KKDYI----KPGAIVIDVG 229 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCcc--CHHHc----CCCCEEEEcc
Confidence 24566789999999999999984 43333 4456999975
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.069 Score=52.55 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=53.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++++..+.||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899877431 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-. + ...+++|++||+.+
T Consensus 202 IvI~AvG~p~~i---------~-----------~~~vk~GavVIDvG 228 (282)
T PRK14169 202 ILVVAVGVPHFI---------G-----------ADAVKPGAVVIDVG 228 (282)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 24578899998743
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.25 Score=52.14 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=65.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~ 77 (480)
+++|.|||+|..|.+.++.|.+.+.|++|+++|.++.. .+.|.+| .. +... .+.+ .+.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g-~~-----------------~~~g~~~~~-~~~ 67 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPED-VE-----------------LHSGGWNLE-WLL 67 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcC-CE-----------------EEeCCCChH-Hhc
Confidence 36799999999999999999876423899999976421 1223221 10 1111 1323 367
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|. +...+..+.+ ++...+.+..+|-+..|..-.||.. +..+|...+
T Consensus 68 ~~d~vV~SpgI~~-----------~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 68 EADLVVTNPGIAL-----------ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred cCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 8998777643332 2222333221 2222222356777777776666655 567777643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.82 Score=46.71 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=77.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCC-CcCCChHHHHhhhcCCCEEE-ecCHHHhh--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLP-IYEPGLDGVVKQCRGKNLFF-STDVEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~-~~e~~l~~~~~~~~~~~l~~-t~d~~~a~-- 76 (480)
.+|.|||+|. |..+.. +.++.+.-+|+++|+|++.++..++- ..+ +....+ ...++++ ..|..+-+
T Consensus 152 krVLIIGgGd-G~tlre-lLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-------~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGGD-GLALRE-VLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-------FDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCCH-HHHHHH-HHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-------CCCceEEEECcHHHHHHh
Confidence 4799999984 444444 44442236899999999988877741 000 000000 1123433 23433322
Q ss_pred --ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH---HHHHHHHhcCCCCceE
Q 011641 77 --SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE---AIEKILTHNSKGIKFQ 151 (480)
Q Consensus 77 --~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~---~l~~~l~~~~~g~~~~ 151 (480)
...|+||+-+|.|... ...--+-.+.++.+...|+++.+++..++.+..... .+...+++.+.....+
T Consensus 223 ~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 3469999998766431 111122356778888999999988776654432222 2344555543222233
Q ss_pred EeeCCcc
Q 011641 152 ILSNPEF 158 (480)
Q Consensus 152 v~~~Pe~ 158 (480)
..+-|.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 4456666
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.14 Score=50.39 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|++|.+.....
T Consensus 150 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 190 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSN---------IVGRPLAGLMVNHDATVTIAHSKT------------------------------ 190 (282)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34467899999999533 456889999999999999875432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|- +.+.+ +..++|||.-
T Consensus 191 ------~~l~~~~~~ADIvI~AvG~p~~i--~~~~v----k~GavVIDvG 228 (282)
T PRK14169 191 ------RNLKQLTKEADILVVAVGVPHFI--GADAV----KPGAVVIDVG 228 (282)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCcEEEEee
Confidence 24567789999999999999984 43333 4456999975
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.3 Score=51.55 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4789999999999999999998 99999999865
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.071 Score=52.83 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=53.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++++.++.||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899887431 235566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-- + ...+++|.+||+.+
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~ik~gavVIDvG 230 (297)
T PRK14186 204 ILVAAAGRPNLI---------G-----------AEMVKPGAVVVDVG 230 (297)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 999999876311 1 24578899998743
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.05 Score=57.12 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=45.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcC------C--CCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC------P--SIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~------~--G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
+||+|+|+|.||..++..|.++. . +.+ +.++|++.++.+.+. . ....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~--------------~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L--------------PGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C--------------cccceeCCH
Confidence 68999999999999998886531 1 234 345688876532110 0 123467888
Q ss_pred HHhhc--cCcEEEEeccC
Q 011641 73 EKHVS--EADIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~--~aDvVii~Vpt 88 (480)
++.+. +.|+|+.|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88775 57999999764
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=50.35 Aligned_cols=79 Identities=16% Similarity=0.048 Sum_probs=60.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+++++|.|+|=+- .-..+|+..|.++|++|.++....
T Consensus 151 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~AtVtichs~T------------------------------ 191 (282)
T PRK14182 151 ARVDPKGKRALVVGRSN---------IVGKPMAMMLLERHATVTIAHSRT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 33467899999999543 567899999999999999976542
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvI~AvGk~~~i~--~~~i----k~gaiVIDvG 229 (282)
T PRK14182 192 ------ADLAGEVGRADILVAAIGKAELVK--GAWV----KEGAVVIDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEee
Confidence 245667899999999999999844 3333 4456899975
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.08 Score=52.08 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=55.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.++.. |.|+++..+.||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 688999999999988 8899988631 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|.-- . ...+++|.+||+.++
T Consensus 205 IvIsAvGk~~~i------------------~--~~~ik~gavVIDvGi 232 (284)
T PRK14177 205 IIVGAVGKPEFI------------------K--ADWISEGAVLLDAGY 232 (284)
T ss_pred EEEEeCCCcCcc------------------C--HHHcCCCCEEEEecC
Confidence 999999876311 1 246789999997654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=51.28 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=76.4
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhh-h-ccccCCCCCCCCCCCC-----cccc
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDL-T-MNKFDWDHPLHLQPMS-----PTMV 397 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-----~~~~ 397 (480)
++|+|+|... ....++..|..+|.+|.+||+.....+..... . ....+ .+....+ ....
T Consensus 4 ~kIaViGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 69 (287)
T PRK08293 4 KNVTVAGAGV----------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRY----VRDLEATKEAPAEAAL 69 (287)
T ss_pred cEEEEECCCH----------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHH----HHcCCCChhhhHHHHH
Confidence 5899999754 77889999999999999999864432111100 0 00000 0000011 1123
Q ss_pred cceEEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCCChhhhhhc---CcEEEEe
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREI---GFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~---g~~y~~i 465 (480)
.++++.+++.++++++|.|+.++.-+. ++.--++++....++..+|.+....+....+.+. .-++.|+
T Consensus 70 ~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~ 141 (287)
T PRK08293 70 NRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLAL 141 (287)
T ss_pred cCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEE
Confidence 567788899999999999999987542 3333345666666655566576666665444432 2345554
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.04 Score=45.17 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=45.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
.+|+|+|+|..|..++..+.+. .|+. +.++|++++++..-- +.+.+..+.+++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~-~g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM-RGFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-HCECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHH-cCCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 3799999999999998655543 2665 567899987542111 235555566665444
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|+-++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999985
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=50.40 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.++-++++++|.|+|=|- .-..+++..|.++|++|.+.+...
T Consensus 150 ~~~~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~atVt~chs~t---------------------------- 192 (284)
T PRK14190 150 KEYNIDISGKHVVVVGRSN---------IVGKPVGQLLLNENATVTYCHSKT---------------------------- 192 (284)
T ss_pred HHcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEEeCCc----------------------------
Confidence 3344467999999999543 567889999999999999875321
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.-
T Consensus 193 --------~~l~~~~~~ADIvI~AvG~p~~--i~~~~i----k~gavVIDvG 230 (284)
T PRK14190 193 --------KNLAELTKQADILIVAVGKPKL--ITADMV----KEGAVVIDVG 230 (284)
T ss_pred --------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence 2456778999999999999998 444444 4456999974
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.083 Score=52.37 Aligned_cols=71 Identities=27% Similarity=0.334 Sum_probs=54.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899988531 234566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|++||+.+
T Consensus 213 Ivv~AvGk~~~i---------~-----------~~~vk~gavVIDvG 239 (299)
T PLN02516 213 IVIAAAGQAMMI---------K-----------GDWIKPGAAVIDVG 239 (299)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999876311 1 24578899998744
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.6 Score=45.62 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=66.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.||-|||.|--|+ +..+.++ ..+|..+|+|++.++..++-. | .+.. ...+.+++......+.- +..|
T Consensus 74 k~VLIiGGGDGg~--~REvLkh--~~~v~mVeID~~Vv~~~k~~l-P----~~~~---~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLEL--AHQLFKY--DTHVDFVQADEKILDSFISFF-P----HFHE---VKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchHH--HHHHHCc--CCeeEEEECCHHHHHHHHHHC-H----HHHH---hhcCCCEEEeehhhhccCCcCC
Confidence 5899999999876 7777776 349999999999998877621 1 1111 12234555544433322 4689
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
+||+-.. + + .+-.+.+.+.|+++.+++..|+.|-
T Consensus 142 VIIvDs~-~------------~----~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-P------------D----IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-C------------C----hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9987621 1 1 2334677888999999988877653
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.27 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|+|.|..|.+.|..|+++ |++|+++|.++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 5799999999999999999998 999999998653
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.08 Score=52.10 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=53.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+..+.||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 4799999 678999999999988 8899887531 235555678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~vk~gavVIDvG 230 (282)
T PRK14180 204 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG 230 (282)
T ss_pred EEEEccCCcCcC---------C-----------HHHcCCCcEEEEec
Confidence 999999876311 1 24577899998743
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.022 Score=58.70 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=32.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999998 999999998765
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.055 Score=54.85 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=54.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH-hhcc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
+||+|||+ |++|.-+...|+++ .|..++..+.-+.+ .|+ ++...+ ..+++. ++++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 68999996 99999999999984 36667777644311 121 111111 124443 2333 2378
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhC-CCCcEEEEecC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS-KSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~ST 128 (480)
+|++|+|+|.. +...+.+.+ ..+..||+.|.
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECCh
Confidence 99999998742 233344433 45788888663
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.15 Score=50.10 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=60.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 151 y~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------ 191 (282)
T PRK14166 151 YEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 456889999999999999866432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvIsAvGkp~~i--~~~~v----k~GavVIDvG 229 (282)
T PRK14166 192 ------KDLSLYTRQADLIIVAAGCVNLL--RSDMV----KEGVIVVDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24567789999999999999984 43333 4456999975
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.079 Score=52.12 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=53.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++++..+.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999987 8899987641 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-- + ...+++|.+||+.+
T Consensus 203 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDvG 229 (282)
T PRK14166 203 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG 229 (282)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 999999876311 1 24567899998744
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.18 Score=50.02 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=60.5
Q ss_pred HhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-.+++++|.|+|=+- .-..+|+..|.++|++|.+.....
T Consensus 151 ~~~i~l~Gk~vvVIGrS~---------iVGkPla~lL~~~~atVtv~hs~T----------------------------- 192 (297)
T PRK14186 151 SQQIDIAGKKAVVVGRSI---------LVGKPLALMLLAANATVTIAHSRT----------------------------- 192 (297)
T ss_pred HhCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 334467899999999533 457889999999999999975432
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|- +.+.+ ++.++|||.-
T Consensus 193 -------~~l~~~~~~ADIvIsAvGkp~~i--~~~~i----k~gavVIDvG 230 (297)
T PRK14186 193 -------QDLASITREADILVAAAGRPNLI--GAEMV----KPGAVVVDVG 230 (297)
T ss_pred -------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566789999999999999984 43333 4456999975
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.064 Score=54.46 Aligned_cols=68 Identities=18% Similarity=0.391 Sum_probs=42.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~ 76 (480)
+||||||+ |++|.-+...|+++ +.++ +..+..... .|+ .+...+ ..+.+. .+.++ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk-~~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGK-TVQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCC-CeeeCC----------cceEEEeCCHHH-h
Confidence 68999995 99999999999964 4677 555544311 121 111111 123332 24443 6
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|.|+|.
T Consensus 67 ~~~Divf~a~~~ 78 (347)
T PRK06728 67 EGVDIAFFSAGG 78 (347)
T ss_pred cCCCEEEECCCh
Confidence 889999999874
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.17 Score=49.83 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=61.2
Q ss_pred HhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
..+-++.+++|.|+|=+- .-..+|+..|.++|++|.+.+...
T Consensus 152 ~y~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVt~chs~T----------------------------- 193 (284)
T PRK14177 152 EYGIDVTGKNAVVVGRSP---------ILGKPMAMLLTEMNATVTLCHSKT----------------------------- 193 (284)
T ss_pred HhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344478999999999543 567889999999999999977532
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|- +.+.+ ++.++|||.-
T Consensus 194 -------~~l~~~~~~ADIvIsAvGk~~~i--~~~~i----k~gavVIDvG 231 (284)
T PRK14177 194 -------QNLPSIVRQADIIVGAVGKPEFI--KADWI----SEGAVLLDAG 231 (284)
T ss_pred -------CCHHHHHhhCCEEEEeCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566689999999999999984 33333 4456999975
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.056 Score=51.49 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=50.4
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+|+ |.+|.+++..|.+. +++|.++-|++. ..+.+.+....+.+-++ .-..++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~------------~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEADY------------DDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-T------------T-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeeccc------------CCHHHHHHHHcCCc
Confidence 789995 99999999999997 999999999863 45666543222111111 11134556789999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=48.44 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=47.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC---eEEEEECC----HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDIS----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~----~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+||.|+|+|.+|..+|..|+.. |. +++++|++ .++.+.|.... .++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~~--------~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPDK--------NEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHHH--------HHHHHHhccCc--ccCCHHH
Confidence 4799999999999999999987 75 59999998 44432221100 01111100001 1135666
Q ss_pred hhccCcEEEEecc
Q 011641 75 HVSEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
+++++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999998876
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.13 Score=52.16 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=51.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|+ |.||..++..|+.+. | .+++++++++++.+.+..... .+.+ .+.++++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el~---------------~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAELG---------------GGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHhc---------------cccH---HhHHHHHccC
Confidence 57999998 899999999998531 3 689999999888877664200 0111 2456778999
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|+.+...+
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999887654
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.2 Score=52.94 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=65.3
Q ss_pred EEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe--cCHHHhhcc
Q 011641 3 KICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TDVEKHVSE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
+|-|||.|..|.+ +|..|+++ |++|+++|.+.. ..+.|.+. ++++. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999998 999999997653 22333321 12221 122 23667
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH----------HHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|. +...++.+.+ -+...+++..+|.+..|..-.||.. +..+|+..+
T Consensus 59 ~d~vV~spgi~~-----------~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 59 ADVVVVSAAIKD-----------DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCEEEECCCCCC-----------CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 998887633222 2122232211 1123333446777777776555554 677887653
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.13 Score=52.70 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEEC
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDI 34 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~ 34 (480)
||+|||||+ |++|.-|...+.++ +.++ +..+..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss 37 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFST 37 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecc
Confidence 799999995 99999999845543 3676 666544
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.2 Score=49.25 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=60.0
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~AtVt~chs~T------------------------------ 192 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSN---------IVGKPVAQLLLNENATVTICHSKT------------------------------ 192 (278)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44468999999999543 467889999999999999976422
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
.++.+.+++||.||.++..+.|- +.+.+ +..++|||.
T Consensus 193 ------~~l~~~~~~ADIvIsAvGkp~~i--~~~~i----k~gavVIDv 229 (278)
T PRK14172 193 ------KNLKEVCKKADILVVAIGRPKFI--DEEYV----KEGAIVIDV 229 (278)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCcEEEEe
Confidence 24566789999999999999984 43334 445699998
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.1 Score=51.17 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.++.. |.++.+..++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999987 8899988641 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|.-- + ...+++|.+||+.
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~ik~gavVIDv 229 (278)
T PRK14172 204 ILVVAIGRPKFI---------D-----------EEYVKEGAIVIDV 229 (278)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCcEEEEe
Confidence 999999876311 1 2457889999874
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.091 Score=43.62 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 4799999999999999999998 89999999875
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.084 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=34.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|||+|.+|.++|..|+.. |. +++++|.+.-....|++
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~R 66 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQR 66 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCc
Confidence 4799999999999999999998 77 89999998655555554
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.21 Score=49.53 Aligned_cols=121 Identities=10% Similarity=0.031 Sum_probs=69.3
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhh-hccccCCCCCCCC-CCCCcccccceEE
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDL-TMNKFDWDHPLHL-QPMSPTMVKQVSV 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 402 (480)
++|+|+|+.. ....++..|.++|.+|.+||+.-+..+..... ........+.... .........+++.
T Consensus 2 ~~V~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGAGV----------MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECccH----------HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 5899999865 77889999999999999999865432221100 0000000000000 0000011234677
Q ss_pred ecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEE-EEcCCCCChhhhh
Q 011641 403 VWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFV-FDGRNVVDANKLR 456 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~v-iD~~~~~~~~~~~ 456 (480)
+++++++++++|+|+.++.-+. .+..-++++.+.+++..+| +|+.. +++..+.
T Consensus 72 ~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~ 126 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST-MSPTEIA 126 (288)
T ss_pred eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHH
Confidence 8889999999999999987653 2222234556665555455 45555 5555444
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.061 Score=54.76 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=40.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-CHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~ 78 (480)
+||+||| .|++|.-+...|+++ .|..++..+..... .|+ ++...+ ..+.+.. +. +.+.+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs------aGk-~~~~~~----------~~~~v~~~~~-~~~~~ 69 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS------AGK-KVTFEG----------RDYTVEELTE-DSFDG 69 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC------CCC-eeeecC----------ceeEEEeCCH-HHHcC
Confidence 6899999 599999999999985 12234444432211 011 111111 1123322 33 34689
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||+|+|.
T Consensus 70 ~D~vf~a~p~ 79 (344)
T PLN02383 70 VDIALFSAGG 79 (344)
T ss_pred CCEEEECCCc
Confidence 9999999874
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.2 Score=49.42 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CEEEEEcCCCCh--HHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK----ARLSIYDPQVTE--DQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+..||+|+|+ +..+..|++.|.++| .+|.++|+.... +.+...
T Consensus 2 ~~mkI~~IG~----------G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~--------------------- 50 (279)
T PRK07679 2 SIQNISFLGA----------GSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK--------------------- 50 (279)
T ss_pred CCCEEEEECc----------cHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh---------------------
Confidence 3458999997 468899999999998 789999975321 111111
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
.++....+..++++++|+||+++.-+.+.+. .+.+....++..+|||.-+=+..+.+++
T Consensus 51 -~g~~~~~~~~e~~~~aDvVilav~p~~~~~v-l~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 51 -YGVKGTHNKKELLTDANILFLAMKPKDVAEA-LIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred -cCceEeCCHHHHHhcCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 1345567888888999999999998877652 3556555554459999866557776665
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.41 Score=50.42 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=29.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|+|+|..|.+.+..|+++ |++|+++|.++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999988888 99999999754
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.27 Score=47.15 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=33.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|..+|..|++. |. +++++|.+.=....+++
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnR 53 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNR 53 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcc
Confidence 4799999999999999999998 64 89999987644444544
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.28 Score=51.57 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=29.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||+|..|.++|..|.++ |++|+++|.++.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 589999999999999999998 999999997643
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.17 Score=49.94 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=61.4
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-.+++++|+|+|-+- .-..+++..|.++|++|.+.+-..
T Consensus 152 ~~i~l~Gk~vvVIGrs~---------~VG~pla~lL~~~gatVtv~~s~t------------------------------ 192 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSH---------IVGQPVSKLLLQKNASVTILHSRS------------------------------ 192 (286)
T ss_pred cCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCCc------------------------------
Confidence 34468999999999532 367899999999999999876321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
.++.+.+++||.||.++..+.|- ..+. .++..+|||.-.-.
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~i--~~~~----vk~gavVIDvGi~~ 233 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGLV--TKDV----VKEGAVIIDVGNTP 233 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCccc--CHHH----cCCCcEEEEcCCCc
Confidence 24567789999999999999874 3333 34456999986543
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.029 Score=57.52 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=32.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999998 999999998865
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.21 Score=49.16 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCC
Q 011641 308 SRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++. ++..+-++++++|.|+|=+. .-..+|+..|.++|++|.+.+-..
T Consensus 143 ~aii~l-L~~y~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~ATVt~chs~T-------------------- 192 (282)
T PRK14180 143 KGIMTM-LREYGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRFT-------------------- 192 (282)
T ss_pred HHHHHH-HHHhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEEcCCC--------------------
Confidence 334443 33344478999999999543 567889999999999999875432
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+-+++||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 193 ----------------~dl~~~~k~ADIvIsAvGkp~~i--~~~~v----k~gavVIDvG 230 (282)
T PRK14180 193 ----------------TDLKSHTTKADILIVAVGKPNFI--TADMV----KEGAVVIDVG 230 (282)
T ss_pred ----------------CCHHHHhhhcCEEEEccCCcCcC--CHHHc----CCCcEEEEec
Confidence 24455689999999999999984 44334 4456999974
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.32 Score=43.78 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=69.2
Q ss_pred HHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCC
Q 011641 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQP 391 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
+-+.+..+-.+.++++.|+|... -...+++.|...|+.|.++|-- +....+.
T Consensus 11 d~i~r~t~~~l~Gk~vvV~GYG~----------vG~g~A~~lr~~Ga~V~V~e~D--Pi~alqA---------------- 62 (162)
T PF00670_consen 11 DGIMRATNLMLAGKRVVVIGYGK----------VGKGIARALRGLGARVTVTEID--PIRALQA---------------- 62 (162)
T ss_dssp HHHHHHH-S--TTSEEEEE--SH----------HHHHHHHHHHHTT-EEEEE-SS--HHHHHHH----------------
T ss_pred HHHHhcCceeeCCCEEEEeCCCc----------ccHHHHHHHhhCCCEEEEEECC--hHHHHHh----------------
Confidence 34444444467899999999765 5689999999999999998742 2111111
Q ss_pred CCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC---ChhhhhhcCcEEEEecC
Q 011641 392 MSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV---DANKLREIGFIVYSIGK 467 (480)
Q Consensus 392 ~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~---~~~~~~~~g~~y~~iG~ 467 (480)
..++++.. +++++++.+|.+|-.|..... ++.+. .+.|+..+++.+.-..= +-+.+++.+..-..+..
T Consensus 63 ----~~dGf~v~-~~~~a~~~adi~vtaTG~~~v--i~~e~-~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~ 133 (162)
T PF00670_consen 63 ----AMDGFEVM-TLEEALRDADIFVTATGNKDV--ITGEH-FRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRP 133 (162)
T ss_dssp ----HHTT-EEE--HHHHTTT-SEEEE-SSSSSS--B-HHH-HHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEET
T ss_pred ----hhcCcEec-CHHHHHhhCCEEEECCCCccc--cCHHH-HHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCC
Confidence 12445554 689999999999999999764 23333 45678887777765542 23344445555555543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.18 Score=49.51 Aligned_cols=79 Identities=22% Similarity=0.108 Sum_probs=59.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|++|.+..-..
T Consensus 151 ~~i~l~Gk~vvViGrS~---------~VG~Pla~lL~~~~AtVti~hs~T------------------------------ 191 (281)
T PRK14183 151 YEIDVKGKDVCVVGASN---------IVGKPMAALLLNANATVDICHIFT------------------------------ 191 (281)
T ss_pred cCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 33467999999999532 456889999999999999865321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.+++|-. .+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvGkp~~i~--~~~v----k~gavvIDvG 229 (281)
T PRK14183 192 ------KDLKAHTKKADIVIVGVGKPNLIT--EDMV----KEGAIVIDIG 229 (281)
T ss_pred ------cCHHHHHhhCCEEEEecCcccccC--HHHc----CCCcEEEEee
Confidence 245667899999999999999844 3333 4456899975
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.023 Score=56.72 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| +|++|..++..|+++ |++|++++++++....+........ .+.+.-..+++++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999998 9999999998765433221110000 011111123455667889
Q ss_pred EEEEecc
Q 011641 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9888764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.11 Score=51.15 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=52.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHH--cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++++||| .+.+|.|+|..|.+ + +..|+.+... |.++++.++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 4799999 68899999999987 5 7788877531 2355666899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
||+||.+++.|.-- . ..++++|.+||+.
T Consensus 204 ADIvV~AvGkp~~i---------~-----------~~~ik~GavVIDv 231 (284)
T PRK14193 204 ADIIVAAAGVAHLV---------T-----------ADMVKPGAAVLDV 231 (284)
T ss_pred CCEEEEecCCcCcc---------C-----------HHHcCCCCEEEEc
Confidence 99999999876311 1 2467889999864
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.11 Score=51.39 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.++.||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899987641 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|.-. + ...+++|++||+.
T Consensus 206 IvVsAvGkp~~i---------~-----------~~~ik~gaiVIDV 231 (294)
T PRK14187 206 ILVAAVGIPNFV---------K-----------YSWIKKGAIVIDV 231 (294)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEe
Confidence 999999876311 1 2456789999864
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.14 Score=51.14 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=31.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|.|.| +|++|..++..|.++ |++|++++++.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 6899999 699999999999998 9999999987653
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.064 Score=51.81 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=35.3
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
+|+|.|+| .|.+|..++..|+++ |++|+++.|++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 57899999 599999999999998 99999999998876554
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.27 Score=56.04 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=64.7
Q ss_pred EEEEECCChhHHHH-HHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhccC
Q 011641 3 KICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
+|.|||+|..|.+. |..|.++ |++|+++|.++. ..+.|.+. ++++. ....+.+.++
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~-------------------gi~~~~g~~~~~~~~~ 64 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAK-------------------GARFFLGHQEEHVPED 64 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCHHHcCCC
Confidence 49999999999998 8899988 999999997642 23334331 11211 1112336678
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcchHHH-HHHHHHhc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
|+||++-.-|. +...+..+.+ ++ ...++...+|.+..|..-.||.. +..+|+..
T Consensus 65 d~vV~SpgI~~-----------~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 65 AVVVYSSSISK-----------DNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred CEEEECCCcCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 98887633222 2122333221 11 22333335777777776666555 56777764
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.21 Score=49.49 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=59.9
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 154 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVt~chs~T------------------------------ 194 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSN---------IVGKPMACLLLGENCTVTTVHSAT------------------------------ 194 (294)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHhhCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 457889999999999999876532
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
.++.+.+++||.||.++..+.|- +.+.+ +..++|||.
T Consensus 195 ------~~l~~~~~~ADIvVsAvGkp~~i--~~~~i----k~gaiVIDV 231 (294)
T PRK14187 195 ------RDLADYCSKADILVAAVGIPNFV--KYSWI----KKGAIVIDV 231 (294)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCCEEEEe
Confidence 24566789999999999999984 43334 345699997
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.071 Score=59.03 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|..|+..|..|++. |++|++|++.+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 5799999999999999999998 999999998764
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.094 Score=51.57 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=31.4
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHH
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
+|.|+|+ |++|..++..|.+. |++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889996 99999999999998 99999999998754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.21 Score=46.27 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=62.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|.|+|=+- .-..+|+..|.++|++|.+.|-..... +.. ....+|..+. ..
T Consensus 59 ~l~GK~vvVIGrS~---------iVGkPla~lL~~~~AtVti~~~~~~~~--~~~--------~~~~~hs~t~---~~-- 114 (197)
T cd01079 59 RLYGKTITIINRSE---------VVGRPLAALLANDGARVYSVDINGIQV--FTR--------GESIRHEKHH---VT-- 114 (197)
T ss_pred CCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEEecCcccc--ccc--------cccccccccc---cc--
Confidence 57899999999543 567899999999999999997433211 000 0001111000 00
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
....++.+.+++||+||.++..++|+ +..+.+ ++.++|||.---
T Consensus 115 ~~~~~l~~~~~~ADIVIsAvG~~~~~-i~~d~i----k~GavVIDVGi~ 158 (197)
T cd01079 115 DEEAMTLDCLSQSDVVITGVPSPNYK-VPTELL----KDGAICINFASI 158 (197)
T ss_pred chhhHHHHHhhhCCEEEEccCCCCCc-cCHHHc----CCCcEEEEcCCC
Confidence 00112567899999999999999983 233333 445689997543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.099 Score=52.67 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=53.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+++... |.|+++..+.||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 8899887531 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-. . ...+++|.+||+.+
T Consensus 260 IvIsAvGkp~~v---------~-----------~d~vk~GavVIDVG 286 (345)
T PLN02897 260 IVIAAAGIPNLV---------R-----------GSWLKPGAVVIDVG 286 (345)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999876311 1 24578899998743
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.12 Score=50.93 Aligned_cols=71 Identities=24% Similarity=0.423 Sum_probs=53.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.++.+..+.||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899887531 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|.-- . ...+++|.+||+.+
T Consensus 205 IvV~AvGkp~~i---------~-----------~~~vk~GavVIDvG 231 (288)
T PRK14171 205 IVVAAIGSPLKL---------T-----------AEYFNPESIVIDVG 231 (288)
T ss_pred EEEEccCCCCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999876311 1 24578899998743
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.14 Score=50.46 Aligned_cols=71 Identities=17% Similarity=0.332 Sum_probs=53.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 678999999999988 7899887431 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++|.+++.|.-- . ...++++++||+.+
T Consensus 203 IvI~AvGk~~~i---------~-----------~~~ik~gaiVIDvG 229 (282)
T PRK14182 203 ILVAAIGKAELV---------K-----------GAWVKEGAVVIDVG 229 (282)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999865311 1 24577899998743
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.26 Score=48.61 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=60.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHh--CCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLG--DKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~--~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
.+-++.+++|.|+|=+- .-..+|+..|.+ ++++|.+..-..
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~~~atVtvchs~T---------------------------- 194 (284)
T PRK14193 152 YDVELAGAHVVVIGRGV---------TVGRPIGLLLTRRSENATVTLCHTGT---------------------------- 194 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHhhccCCCEEEEeCCCC----------------------------
Confidence 34467899999999643 567889999998 799999875421
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- ..+.+ ++.++|||.-
T Consensus 195 --------~~l~~~~k~ADIvV~AvGkp~~i--~~~~i----k~GavVIDvG 232 (284)
T PRK14193 195 --------RDLAAHTRRADIIVAAAGVAHLV--TADMV----KPGAAVLDVG 232 (284)
T ss_pred --------CCHHHHHHhCCEEEEecCCcCcc--CHHHc----CCCCEEEEcc
Confidence 24677789999999999999984 43334 4456999975
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.45 Score=49.99 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-E----------CCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-D----------ISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D----------~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
++|+|.|.|++|..+|..|.+. |.+|+++ | +|.+.+.+.++.. ..+ ..+... .+.+..
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l-----~~~~~~---~~~~~i 302 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRI-----SEYAEE---FGAEYL 302 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCch-----hhhhhh---cCCeec
Confidence 5899999999999999999998 8999988 8 7777666655421 111 111000 011222
Q ss_pred cCHHHhh-ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCC
Q 011641 70 TDVEKHV-SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGI 148 (480)
Q Consensus 70 ~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~ 148 (480)
+ .++.+ .+||+++-|-.+.. .+ .+....+.. .+.-+|.+.-..|-| ..-.++|.+.+
T Consensus 303 ~-~~~i~~~d~DVliPaAl~n~----------It----~~~a~~i~~---~~akiIvEgAN~p~t-~~A~~~L~~rG--- 360 (445)
T PRK09414 303 E-GGSPWSVPCDIALPCATQNE----------LD----EEDAKTLIA---NGVKAVAEGANMPST-PEAIEVFLEAG--- 360 (445)
T ss_pred C-CccccccCCcEEEecCCcCc----------CC----HHHHHHHHH---cCCeEEEcCCCCCCC-HHHHHHHHHCC---
Confidence 2 22222 37999999965432 11 122333321 133344455444444 44556777654
Q ss_pred ceEEeeCCcccc
Q 011641 149 KFQILSNPEFLA 160 (480)
Q Consensus 149 ~~~v~~~Pe~~~ 160 (480)
+.+.|..+.
T Consensus 361 ---I~~vPD~la 369 (445)
T PRK09414 361 ---VLFAPGKAA 369 (445)
T ss_pred ---cEEECchhh
Confidence 456787753
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.046 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=34.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|.| +|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999999 5999999999999861 499999999877665544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.27 Score=48.46 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=59.8
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-.+.+++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 158 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------ 198 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSN---------VVGKPMAAMLLNRNATVSVCHVFT------------------------------ 198 (287)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCEEEEEeccC------------------------------
Confidence 34467999999999532 357889999999999999977322
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..|.|-. .+ ..++.++|||.-
T Consensus 199 ------~~l~~~~~~ADIvv~AvG~p~~i~--~~----~vk~gavVIDvG 236 (287)
T PRK14176 199 ------DDLKKYTLDADILVVATGVKHLIK--AD----MVKEGAVIFDVG 236 (287)
T ss_pred ------CCHHHHHhhCCEEEEccCCccccC--HH----HcCCCcEEEEec
Confidence 245667899999999999998743 32 335556999975
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.12 Score=50.68 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=0.0
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+ .+|.++|..|... |..|+.+..+ +.++.+.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~---------------------------------t~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSK---------------------------------TENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecC---------------------------------hhHHHHHHhhCC
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|.-. -...++++++||+.+.
T Consensus 198 IvI~Avgk~~lv--------------------~~~~vk~GavVIDVgi 225 (279)
T PRK14178 198 ILVSAAGKAGFI--------------------TPDMVKPGATVIDVGI 225 (279)
T ss_pred EEEECCCccccc--------------------CHHHcCCCcEEEEeec
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.23 Score=48.94 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=59.2
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++.+++|.|+|=+- .-..+++..|.++|++|.+.+-..
T Consensus 151 ~~i~l~Gk~vvVvGrs~---------~VG~Pla~lL~~~gAtVtv~hs~t------------------------------ 191 (285)
T PRK14191 151 YHIEIKGKDVVIIGASN---------IVGKPLAMLMLNAGASVSVCHILT------------------------------ 191 (285)
T ss_pred hCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCEEEEEeCCc------------------------------
Confidence 34467899999999532 467889999999999999974321
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvG~p~~i~--~~~v----k~GavVIDvG 229 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVGKPDLIK--ASMV----KKGAVVVDIG 229 (285)
T ss_pred ------HHHHHHHHhCCEEEEecCCCCcCC--HHHc----CCCcEEEEee
Confidence 234567899999999999999844 3333 4456899975
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.1 Score=46.87 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=74.6
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.+.+++|+|+|.+ .-+..++..|...| .+|.++|...... .+...++ +
T Consensus 176 ~~l~~~~VlViGaG----------~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g-----~-------------- 226 (417)
T TIGR01035 176 GSLKGKKALLIGAG----------EMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG-----G-------------- 226 (417)
T ss_pred CCccCCEEEEECCh----------HHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC-----C--------------
Confidence 35788999999963 47788999999999 7899999865432 2222221 0
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcC---CCCEEEEcCCC--CChhhhhhcCcEEEEe
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ---KPAFVFDGRNV--VDANKLREIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~---~~~~viD~~~~--~~~~~~~~~g~~y~~i 465 (480)
..+ ...++.+++.++|+||.+|..++.- ++.+.+...+. .|.+++|...- +++.-..-.|..++.+
T Consensus 227 ~~i-~~~~l~~~l~~aDvVi~aT~s~~~i-i~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~v 297 (417)
T TIGR01035 227 EAV-KFEDLEEYLAEADIVISSTGAPHPI-VSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDV 297 (417)
T ss_pred eEe-eHHHHHHHHhhCCEEEECCCCCCce-EcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEH
Confidence 011 1246778889999999999887753 45555555443 35699999742 3443222235655554
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.3 Score=48.50 Aligned_cols=79 Identities=20% Similarity=0.098 Sum_probs=60.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-.+++++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 161 ~~i~l~Gk~vvVIGRS~---------iVGkPla~lL~~~~ATVtvchs~T------------------------------ 201 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSN---------IVGLPVSLLLLKADATVTVVHSRT------------------------------ 201 (299)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 467889999999999999975432
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-.-+ .+ ++.++|||.-
T Consensus 202 ------~nl~~~~~~ADIvv~AvGk~~~i~~~--~v----k~gavVIDvG 239 (299)
T PLN02516 202 ------PDPESIVREADIVIAAAGQAMMIKGD--WI----KPGAAVIDVG 239 (299)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCccCHH--Hc----CCCCEEEEee
Confidence 24577789999999999999875432 23 4456899975
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.3 Score=48.17 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=59.4
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|++|.+..-..
T Consensus 153 y~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~ATVtichs~T------------------------------ 193 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSN---------IVGKPLSALLLKENCSVTICHSKT------------------------------ 193 (288)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 456889999999999999865322
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 194 ------~~L~~~~~~ADIvV~AvGkp~~i~--~~~v----k~GavVIDvG 231 (288)
T PRK14171 194 ------HNLSSITSKADIVVAAIGSPLKLT--AEYF----NPESIVIDVG 231 (288)
T ss_pred ------CCHHHHHhhCCEEEEccCCCCccC--HHHc----CCCCEEEEee
Confidence 245667899999999999998754 3333 4456999975
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.14 Score=41.57 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCC---CEEE-EEcCCCChHHHH-HhhhccccCCCCCCCCCCCCcccccce
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK---ARLS-IYDPQVTEDQIQ-RDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g---~~V~-~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|. ...+..|++.|.+.| .+|. ++++.-...... .++ ..
T Consensus 1 kI~iIG~----------G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~~ 48 (96)
T PF03807_consen 1 KIGIIGA----------GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------GV 48 (96)
T ss_dssp EEEEEST----------SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------TT
T ss_pred CEEEECC----------CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------cc
Confidence 6888886 357899999999999 9999 558865432221 211 13
Q ss_pred EEec-CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 401 SVVW-DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~~~-~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.... +..++++.+|+|++.++...+.++- +.+....+ ..+|||.-
T Consensus 49 ~~~~~~~~~~~~~advvilav~p~~~~~v~-~~i~~~~~-~~~vis~~ 94 (96)
T PF03807_consen 49 QATADDNEEAAQEADVVILAVKPQQLPEVL-SEIPHLLK-GKLVISIA 94 (96)
T ss_dssp EEESEEHHHHHHHTSEEEE-S-GGGHHHHH-HHHHHHHT-TSEEEEES
T ss_pred ccccCChHHhhccCCEEEEEECHHHHHHHH-HHHhhccC-CCEEEEeC
Confidence 3444 7899999999999999998887643 23323323 34888864
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.29 Score=48.32 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=60.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|++|.+.+-..
T Consensus 153 ~~i~l~Gk~vvViGrs~---------iVG~Pla~lL~~~~atVtv~hs~T------------------------------ 193 (285)
T PRK10792 153 YGIDTYGLNAVVVGASN---------IVGRPMSLELLLAGCTVTVCHRFT------------------------------ 193 (285)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCeEEEEECCC------------------------------
Confidence 34467899999999532 357889999999999999975421
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++.++.|- .. +..+..++|||.-
T Consensus 194 ------~~l~~~~~~ADIvi~avG~p~~v--~~----~~vk~gavVIDvG 231 (285)
T PRK10792 194 ------KNLRHHVRNADLLVVAVGKPGFI--PG----EWIKPGAIVIDVG 231 (285)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcccc--cH----HHcCCCcEEEEcc
Confidence 24567789999999999999974 33 3345567999986
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.13 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.9
Q ss_pred cEEEEECCChhHHHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIAL 22 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~ 22 (480)
|||+|||+|.||..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999987
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.068 Score=51.17 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=33.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.=....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCccccc
Confidence 4799999999999999999998 65 79999877544444443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.044 Score=55.00 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|+|||+|..|+.+|..|+++ |++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 4799999999999999999999 999999998754
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.42 Score=49.31 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=60.0
Q ss_pred CCCeEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 323 SNKKIAVLG-FAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..++|+|+| +. ...-.++..|.++|.+|.+||+...
T Consensus 97 ~~~~I~IiGG~G----------lmG~slA~~l~~~G~~V~~~d~~~~--------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKG----------QLGRLFAKMLTLSGYQVRILEQDDW--------------------------------- 133 (374)
T ss_pred ccceEEEEcCCC----------hhhHHHHHHHHHCCCeEEEeCCCcc---------------------------------
Confidence 447999998 64 3678889999999999999997310
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
++++++++++|+||++++.+...+. +.++.. +++..+|+|.-.+
T Consensus 134 --~~~~~~~~~aDlVilavP~~~~~~~-~~~l~~-l~~~~iv~Dv~Sv 177 (374)
T PRK11199 134 --DRAEDILADAGMVIVSVPIHLTEEV-IARLPP-LPEDCILVDLTSV 177 (374)
T ss_pred --hhHHHHHhcCCEEEEeCcHHHHHHH-HHHHhC-CCCCcEEEECCCc
Confidence 1346778899999999998875432 345555 5666799999665
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.41 E-value=1 Score=48.47 Aligned_cols=110 Identities=8% Similarity=0.046 Sum_probs=69.4
Q ss_pred HHHHHHHHhcC-cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEEcCCCChHH-HHHhhhccccCCCCC
Q 011641 310 FVNRVVASMFN-TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA-RLSIYDPQVTEDQ-IQRDLTMNKFDWDHP 386 (480)
Q Consensus 310 ~~~~~~~~l~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~-~~~~~~~~~~~~~~~ 386 (480)
.++...+.++. ++.+++|+|+|.+ ..+..+++.|...|+ +|.++++.....+ +...++
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG----------~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--------- 311 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAG----------KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--------- 311 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCH----------HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------
Confidence 33444444432 4789999999974 478889999999997 6999998765432 222110
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhc------CCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM------QKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~------~~~~~viD~~ 447 (480)
+..-.+...+++.+++.++|+||.+|.-+.+- +..+.+...+ .+|.++||.-
T Consensus 312 --------g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv-I~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 312 --------DVEIIYKPLDEMLACAAEADVVFTSTSSETPL-FLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred --------CCceEeecHhhHHHHHhcCCEEEEccCCCCCe-eCHHHHHHhhhcccccCCCeEEEEeC
Confidence 00001112356778899999999999665542 3444444433 1467999974
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.077 Score=53.97 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=40.0
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeE---EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhc
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEV---AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVS 77 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V---~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~ 77 (480)
||+||| .|++|.-+...|+++ +|++ ..+..+.+.-+.+. ..+ ..+.+. .+. +.++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~-~~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKI-ESFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCCh-HHhc
Confidence 689999 799999999999986 6653 34444322111111 001 012222 133 3468
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999774
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.28 Score=48.33 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=76.6
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.||+|+|+. ..+..++..|.++|. +|.+||+.....+...+ ..++
T Consensus 3 ~~IgfIG~G----------~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---------------------~~g~ 51 (272)
T PRK12491 3 KQIGFIGCG----------NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---------------------KYGI 51 (272)
T ss_pred CeEEEECcc----------HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---------------------hcCc
Confidence 479999984 478999999999884 69999985433221110 0124
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCcccccCCC
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 478 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~ 478 (480)
..+.+..+.++++|+|++++.-+.+.++ .+.+....++..+|||.-.=++-+.+++. +| +..++.+-||.
T Consensus 52 ~~~~~~~e~~~~aDiIiLavkP~~~~~v-l~~l~~~~~~~~lvISi~AGi~i~~l~~~------l~-~~~~vvR~MPN 121 (272)
T PRK12491 52 TITTNNNEVANSADILILSIKPDLYSSV-INQIKDQIKNDVIVVTIAAGKSIKSTENE------FD-RKLKVIRVMPN 121 (272)
T ss_pred EEeCCcHHHHhhCCEEEEEeChHHHHHH-HHHHHHhhcCCcEEEEeCCCCcHHHHHHh------cC-CCCcEEEECCC
Confidence 5567788888999999999996555542 24555444444599999888887777652 12 12345666664
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.096 Score=55.54 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred cEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh----hcC------CCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ----CRG------KNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~----~~~------~~l~~t~ 70 (480)
.||+|||.|.-|+..|..|+ +. |++|.+||+.+.---.++-|..|.+ +....+... ... +++.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~--g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE--RVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 48999999999999999776 45 8999999998765444444544433 333222111 111 2334434
Q ss_pred C--HHHhhccCcEEEEeccCC
Q 011641 71 D--VEKHVSEADIVFVSVNTP 89 (480)
Q Consensus 71 d--~~~a~~~aDvVii~Vptp 89 (480)
| .++..+..|.||+++...
T Consensus 117 Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 117 DLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred ccCHHHHHhcCCEEEEEcCCC
Confidence 3 566556899999998754
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.69 Score=49.24 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||+|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999653
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.17 Score=53.78 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.17 Score=51.33 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=53.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++.+..+.||
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR---------------------------------TKNPEEITREAD 276 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCeEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 688999999999988 8899987431 235566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++.|.-. + ...+++|.+||+.
T Consensus 277 IVIsAvGkp~~i---------~-----------~d~vK~GAvVIDV 302 (364)
T PLN02616 277 IIISAVGQPNMV---------R-----------GSWIKPGAVVIDV 302 (364)
T ss_pred EEEEcCCCcCcC---------C-----------HHHcCCCCEEEec
Confidence 999999876321 1 2457889999864
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.17 Score=49.08 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=73.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|+| .|-+|.|++..|..+ |. -+..+||+.... -+.....++..+.. + ....-...++++++++
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~~--GVaaDlSHI~T~s~------V--~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANTP--GVAADLSHINTNSS------V--VGFTGADGLENALKGA 97 (345)
T ss_pred ceEEEEecCCccCccHHHHHhcC-cccceeeeeecccCC--cccccccccCCCCc------e--eccCChhHHHHHhcCC
Confidence 5899999 599999999888764 33 367889985211 11111111111000 0 0111124577889999
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 80 DIVFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 80 DvVii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
|+|+|+-.-|...... |+--..+-.-+......+++.++.-.+.++ |.|+.++-- ..++|.+.+
T Consensus 98 dvVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vI--sNPVNstVPIaaevlKk~G 163 (345)
T KOG1494|consen 98 DVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVI--SNPVNSTVPIAAEVLKKAG 163 (345)
T ss_pred CEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEee--cCcccccchHHHHHHHHcC
Confidence 9999998877654210 000122334556666777777775554444 455555433 345666654
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.31 Score=49.43 Aligned_cols=89 Identities=16% Similarity=0.103 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-++++++|.|+|=+- --..+|+..|.++|++|.+..-..
T Consensus 215 p~avielL-~~y~i~l~GK~vvVIGRS~---------iVGkPLa~LL~~~~ATVTicHs~T------------------- 265 (364)
T PLN02616 215 PKGCIELL-HRYNVEIKGKRAVVIGRSN---------IVGMPAALLLQREDATVSIVHSRT------------------- 265 (364)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCeEEEeCCCC-------------------
Confidence 34444443 3344578999999999533 456789999999999999975432
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||+||.++..+.|- +.+.+ ++.++|||.-
T Consensus 266 -----------------~nl~~~~r~ADIVIsAvGkp~~i--~~d~v----K~GAvVIDVG 303 (364)
T PLN02616 266 -----------------KNPEEITREADIIISAVGQPNMV--RGSWI----KPGAVVIDVG 303 (364)
T ss_pred -----------------CCHHHHHhhCCEEEEcCCCcCcC--CHHHc----CCCCEEEecc
Confidence 24567789999999999999984 43333 4456999975
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.051 Score=56.15 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999998 999999998754
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.21 Score=55.37 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|||.|.| +|++|..++..|.+. ||+|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChh
Confidence 7999999 699999999999998 999999998754
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.92 Score=42.46 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=69.1
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHH-HHhhhccccCCCCCCCCCCCCcccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQI-QRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.++++++|+|.|+. .-+..+++.|.+.|++|.++|......+. ...+
T Consensus 23 ~~~l~gk~v~I~G~G----------~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--------------------- 71 (200)
T cd01075 23 TDSLEGKTVAVQGLG----------KVGYKLAEHLLEEGAKLIVADINEEAVARAAELF--------------------- 71 (200)
T ss_pred CCCCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---------------------
Confidence 457889999999985 26788999999999999999986432111 1111
Q ss_pred cceEEecCHHhhcc-cccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC-CC----hhhhhhcCcEEEE
Q 011641 398 KQVSVVWDAYEATK-DAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV-VD----ANKLREIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~~-~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~-~~----~~~~~~~g~~y~~ 464 (480)
+.+..++ ++.+. ++|+++-++-... ++-+.+ +.++.+ +|+++-|- +. .+.+++.|+.|.-
T Consensus 72 -g~~~v~~-~~l~~~~~Dv~vp~A~~~~---I~~~~~-~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 72 -GATVVAP-EEIYSVDADVFAPCALGGV---INDDTI-PQLKAK-AIAGAANNQLADPRHGQMLHERGILYAP 137 (200)
T ss_pred -CCEEEcc-hhhccccCCEEEecccccc---cCHHHH-HHcCCC-EEEECCcCccCCHhHHHHHHHCCCEEeC
Confidence 1222322 33333 7899886655433 454554 455655 89999996 22 2345577888843
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.15 Score=45.85 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=56.8
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCC-hHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVT-EDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++|+|+|. .|....-+..|++.|.+|.+-...-+ ..+..++ +++
T Consensus 2 l~~k~IAViGy----------GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~----------------------~Gf 49 (165)
T PF07991_consen 2 LKGKTIAVIGY----------GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA----------------------DGF 49 (165)
T ss_dssp HCTSEEEEES-----------SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH----------------------TT-
T ss_pred cCCCEEEEECC----------ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH----------------------CCC
Confidence 36899999995 57789999999999999998766555 2222222 234
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEE
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVF 444 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~vi 444 (480)
+. .+..||++.||+|+++++-..-.++=-+++...|+....++
T Consensus 50 ~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 50 EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEE
T ss_pred ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEE
Confidence 33 47899999999999998654333332257788887654443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.13 Score=56.02 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=29.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+|+|||.|..|+..|..|++. |++|+++|..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~ 169 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAG 169 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 4799999999999999999998 9999999964
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.073 Score=61.35 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|.-|++.|..|++. ||+|++||..+.
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~ 340 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHD 340 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Confidence 5899999999999999999998 999999998643
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.054 Score=56.53 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999998 999999999764
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.41 Score=42.36 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=68.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
..++++|+|+|.. ..+..+++.|.+.| .+|.++|+.....+ ....++. ..-
T Consensus 16 ~~~~~~i~iiG~G----------~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-----------------~~~ 68 (155)
T cd01065 16 ELKGKKVLILGAG----------GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-----------------LGI 68 (155)
T ss_pred CCCCCEEEEECCc----------HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-----------------ccc
Confidence 4578899999963 36788999999986 88999998654322 1222110 000
Q ss_pred ceEEecCHHhhcccccEEEEEecCccc--ccccHHHHHHhcCCCCEEEEcCCCCCh----hhhhhcCcEE
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEF--KTLDYQRIYDNMQKPAFVFDGRNVVDA----NKLREIGFIV 462 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~--~~~~~~~~~~~~~~~~~viD~~~~~~~----~~~~~~g~~y 462 (480)
.. ...+..+.++++|+||.+|+-+.. ...... ...++...+|+|.-..-.. +.+++.|..+
T Consensus 69 ~~-~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~ 135 (155)
T cd01065 69 AI-AYLDLEELLAEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKT 135 (155)
T ss_pred ce-eecchhhccccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCce
Confidence 01 234666778999999999988764 111111 1123445689999655321 3445566644
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.18 Score=50.69 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=68.7
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....++..|.+.|.+|.+||..-...+.....+ .++... +. .....++....+
T Consensus 3 kI~iiG~G----------~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~~-~~-~~~~~~~~~~~~ 64 (325)
T PRK00094 3 KIAVLGAG----------SWGTALAIVLARNGHDVTLWARDPEQAAEINADR------ENPRYL-PG-IKLPDNLRATTD 64 (325)
T ss_pred EEEEECCC----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC------cccccC-CC-CcCCCCeEEeCC
Confidence 79999984 5889999999999999999998543222111110 000000 00 011124666778
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
+.++++++|+|+++++.+...+ -++.+.....+..+|++..|=+++
T Consensus 65 ~~~~~~~~D~vi~~v~~~~~~~-v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 65 LAEALADADLILVAVPSQALRE-VLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred HHHHHhCCCEEEEeCCHHHHHH-HHHHHHhhcCCCCEEEEEeecccC
Confidence 8888999999999999864433 224555555555689999865554
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.19 Score=55.79 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|+|||.|..|++.|..|++. |++|++||..+.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~ 361 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPE 361 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4799999999999999999998 999999998643
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.23 Score=48.93 Aligned_cols=73 Identities=19% Similarity=0.398 Sum_probs=52.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCC--CCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCP--SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~--G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+||| ...+|.|+|..|.++++ +..|+.+.. .|.++++.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs---------------------------------~T~~l~~~~~~ 200 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS---------------------------------QSENLTEILKT 200 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC---------------------------------CCCCHHHHHhh
Confidence 4799999 57899999999987621 356776532 12456667899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
||+||.+++.|.-. . ...+++|++||+.+
T Consensus 201 ADIvV~AvG~p~~i---------~-----------~~~ik~GavVIDvG 229 (287)
T PRK14181 201 ADIIIAAIGVPLFI---------K-----------EEMIAEKAVIVDVG 229 (287)
T ss_pred CCEEEEccCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 99999999876311 1 24578899998743
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.38 Score=48.57 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++.+ +..+-.+++++|.|+|=+- --..+++..|.++|++|.+..-..
T Consensus 198 p~avi~LL-~~~~i~l~GK~vvVIGRS~---------iVGkPla~LL~~~~ATVTicHs~T------------------- 248 (345)
T PLN02897 198 PKGCVELL-IRSGVEIAGKNAVVIGRSN---------IVGLPMSLLLQRHDATVSTVHAFT------------------- 248 (345)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCEEEEEcCCC-------------------
Confidence 44555544 3344578999999999532 356788899999999998865322
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 249 -----------------~nl~~~~~~ADIvIsAvGkp~~v~--~d~v----k~GavVIDVG 286 (345)
T PLN02897 249 -----------------KDPEQITRKADIVIAAAGIPNLVR--GSWL----KPGAVVIDVG 286 (345)
T ss_pred -----------------CCHHHHHhhCCEEEEccCCcCccC--HHHc----CCCCEEEEcc
Confidence 245677899999999999999844 3333 4456999975
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.14 Score=50.75 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=32.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRIN 40 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
|+|-|.| .|++|..++..|.++ ||+|+++|+......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCcccc
Confidence 5699999 599999999999998 999999999766543
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.083 Score=40.33 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.3
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.-|+..|..|+++ |++|++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999998 99999999864
|
... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.43 Score=47.40 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCH---HHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISV---SRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~---~~v~~l~ 43 (480)
+++.|+|+|.+|.+++..|++. |.. |++++|++ ++.+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 3688999999999999999988 875 99999996 5655554
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.21 Score=49.22 Aligned_cols=72 Identities=26% Similarity=0.448 Sum_probs=0.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.+ + +..|+.+..+ |.++.+.+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~--~AtVt~~hs~---------------------------------t~~l~~~~ 202 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFA--NATVTVCHSR---------------------------------TPDLAEEC 202 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccC--CCEEEEEeCC---------------------------------chhHHHHH
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.||+||.+++.|.-- -...++++.+||+.+.
T Consensus 203 ~~ADIVI~AvG~p~li--------------------~~~~vk~GavVIDVGi 234 (286)
T PRK14184 203 READFLFVAIGRPRFV--------------------TADMVKPGAVVVDVGI 234 (286)
T ss_pred HhCCEEEEecCCCCcC--------------------CHHHcCCCCEEEEeee
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.7 Score=40.40 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=61.1
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHh---h-c
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---V-S 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~-~ 77 (480)
+|.-+|+|.-..++..... .+++..|+++|++++.++..++..... ++ ..++.+ ..|..+. . .
T Consensus 43 ~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred EEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcCC
Confidence 5788888772222222111 112468999999999888665321000 00 012222 2233222 1 4
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|.||+..... .+..+++.+...++++..++. .+...++.+++.+.+++.
T Consensus 111 ~~D~V~~~~~~~---------------~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 111 KFDRIFIGGGSE---------------KLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENI 161 (198)
T ss_pred CCCEEEECCCcc---------------cHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHc
Confidence 589998864321 135667777788888665554 333445556666666554
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.066 Score=55.30 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999998 999999998753
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.059 Score=56.20 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~ 37 (480)
|||.|||.|.-|+++|..|+++ | .+|++|++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999998 7 49999999764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.071 Score=55.24 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
..|.|||.|.+|+++|..|++..+|++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999865689999999864
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.4 Score=48.47 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=67.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.||+|+|. .+....++..|.+.|.+|.+||+.....+.....+....+. . .......+...+
T Consensus 5 m~I~iIG~----------G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~------~--g~~~~~~~~~~~ 66 (328)
T PRK14618 5 MRVAVLGA----------GAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYL------P--GVALPAELYPTA 66 (328)
T ss_pred CeEEEECc----------CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccC------C--CCcCCCCeEEeC
Confidence 48999997 57899999999999999999999544322212111000000 0 001112355667
Q ss_pred CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 405 DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
++.++++++|.|+++++.... ..+.+.+++..+++|..+=+
T Consensus 67 ~~~e~~~~aD~Vi~~v~~~~~-----~~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 67 DPEEALAGADFAVVAVPSKAL-----RETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CHHHHHcCCCEEEEECchHHH-----HHHHHhcCcCCEEEEEeecc
Confidence 888889999999999998864 33445555556889988833
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.063 Score=55.45 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4799999999999999999998 999999998764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.067 Score=55.39 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=31.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+++|.|||.|..|+.+|..|+++ |++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence 36799999999999999999999 9999999997
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.21 Score=49.88 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCChH--HHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCc
Q 011641 346 AIDVCKGLLGDKARLSIYDPQVTED--QIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
...+++.|.++|++|.+||+.-... +.+..+. ..+...++++.++++++|+|++++.-+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~La-------------------eaGA~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVE-------------------DAGVKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHH-------------------HCCCeecCCHHHHHhCCCEEEEecCCH
Confidence 4789999999999999999854321 1111111 124567788999999999999999876
Q ss_pred cc-ccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 424 EF-KTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
+- +++ ...+...++...+|||+.-+-
T Consensus 93 aaV~eV-l~GLaa~L~~GaIVID~STIs 119 (341)
T TIGR01724 93 KGTFSI-ARTIIEHVPENAVICNTCTVS 119 (341)
T ss_pred HHHHHH-HHHHHhcCCCCCEEEECCCCC
Confidence 52 233 245666677667999995544
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.067 Score=54.80 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=31.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+++|.|||.|..|+.+|..|++. |++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 36899999999999999999998 999999998754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.26 Score=49.33 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=63.8
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA--RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..+|+|+|+. .-+..++..|.+.|. +|.+||+.....+.....+ ....
T Consensus 6 ~~~I~IIG~G----------~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g--------------------~~~~ 55 (307)
T PRK07502 6 FDRVALIGIG----------LIGSSLARAIRRLGLAGEIVGADRSAETRARARELG--------------------LGDR 55 (307)
T ss_pred CcEEEEEeeC----------HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC--------------------CCce
Confidence 4689999974 477889999999985 8999998644322222111 0012
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
...+.+++++++|+||++|+-.....+ .+.+...+++..+|+|.-++
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~~~~~v-~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVGASGAV-AAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHHHHHHH-HHHHHhhCCCCCEEEeCccc
Confidence 345677888999999999987654432 24455556655688997554
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.75 Score=44.05 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=35.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|.|+| .|.+|..+|..|+++ |++|+++++++++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 7899999 599999999999998 999999999988766554
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.53 Score=46.45 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=59.3
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD----KARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+-++++++|.|+|=+- .-..+|+..|.++ +++|.+..-..
T Consensus 147 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~AtVtvchs~T-------------------------- 191 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSN---------IVGKPLAALLMQKHPDTNATVTLLHSQS-------------------------- 191 (287)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHhCcCCCCCEEEEeCCCC--------------------------
Confidence 33467899999999532 4678899999998 78999854321
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.++..+.|-. .+.+ ++.++|||.-
T Consensus 192 ----------~~l~~~~~~ADIvV~AvG~p~~i~--~~~i----k~GavVIDvG 229 (287)
T PRK14181 192 ----------ENLTEILKTADIIIAAIGVPLFIK--EEMI----AEKAVIVDVG 229 (287)
T ss_pred ----------CCHHHHHhhCCEEEEccCCcCccC--HHHc----CCCCEEEEec
Confidence 246777899999999999999844 3333 4456999975
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.069 Score=54.96 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|..|+++|..|++. |++|+++|..+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCCC
Confidence 67899999999999999999998 99999999753
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.26 Score=51.96 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred eEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 326 KIAVLG-FAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 326 ~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
+|+|+| +. ..+..++..|.++|.+|.+||+..... +....+ ++.+.
T Consensus 2 kI~IIGG~G----------~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~----------------------gv~~~ 49 (437)
T PRK08655 2 KISIIGGTG----------GLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL----------------------GVEYA 49 (437)
T ss_pred EEEEEecCC----------HHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc----------------------CCeec
Confidence 688886 42 467889999999999999999754321 121211 24456
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
.+..++++++|+|+++++-+...+ -.+++...+++..+|+|..++
T Consensus 50 ~~~~e~~~~aDvVIlavp~~~~~~-vl~~l~~~l~~~~iViDvsSv 94 (437)
T PRK08655 50 NDNIDAAKDADIVIISVPINVTED-VIKEVAPHVKEGSLLMDVTSV 94 (437)
T ss_pred cCHHHHhccCCEEEEecCHHHHHH-HHHHHHhhCCCCCEEEEcccc
Confidence 678888999999999998765543 235666667767799999875
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=3.6 Score=37.66 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=34.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++.|+|...+|..++..|++. |++|++.++++++.+.+.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~--G~~V~v~~R~~~~~~~l~ 40 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK--GFHVSVIARREVKLENVK 40 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--cCEEEEEECCHHHHHHHH
Confidence 7899999766777899999998 999999999988766554
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.11 Score=45.15 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
.||+|+|+|.+|..+|..|++. |. +++++|.+.=
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh--CCCceeecCCcce
Confidence 5899999999999999999998 76 7999998643
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.26 Score=50.16 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCChH--HHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCc
Q 011641 346 AIDVCKGLLGDKARLSIYDPQVTED--QIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
...++..|.++|.+|.+||+.-..- +....+ ...++....+..++++++|+||++++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l-------------------~~~Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKV-------------------EDAGVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHH-------------------HHCCCEEeCCHHHHHhCCCEEEEECCCc
Confidence 4789999999999999999865421 011111 0134667778889999999999999977
Q ss_pred c-cccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 424 E-FKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 424 ~-~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
. .+++ ++.+...++...+|+|+..+-
T Consensus 93 ~~v~~V-l~~L~~~L~~g~IVId~ST~~ 119 (342)
T PRK12557 93 KKTVEI-AKNILPHLPENAVICNTCTVS 119 (342)
T ss_pred HHHHHH-HHHHHhhCCCCCEEEEecCCC
Confidence 6 3432 346667776667899987653
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.66 Score=44.44 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCcEEEEeccCCCCCCCCCCCCCCChHHHH
Q 011641 29 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEADIVFVSVNTPTKTQGLGAGKAADLTYWE 107 (480)
Q Consensus 29 V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~ 107 (480)
|.++|+++++.+.+.+.. +....+|+++.+ .+.|+|++|.|+..+
T Consensus 5 vaV~D~~~e~a~~~a~~~------------------g~~~~~d~~eLl~~~vDaVviatp~~~H---------------- 50 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------------------GAKIVSDFDEFLPEDVDIVVEAASQEAV---------------- 50 (229)
T ss_pred EEEECCCHHHHHHHHHHh------------------CCceECCHHHHhcCCCCEEEECCChHHH----------------
Confidence 567999999988776521 134567788754 579999999876421
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCcch---HHHHHHHHHhcCCCCceEEe
Q 011641 108 SAARVIADVSKSDKIVVEKSTVPVKT---AEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 108 ~~~~~i~~~l~~~~iVi~~STv~~gt---~~~l~~~l~~~~~g~~~~v~ 153 (480)
.+.....++.|+-|+..|.....+ .+++.+..++. |..+++.
T Consensus 51 --~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 51 --KEYAEKILKNGKDLLIMSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred --HHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 223333444555454456543333 44455555554 3445554
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PTZ00245 ubiquitin activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.66 Score=44.81 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=68.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHH---H---HhhhcCCCEEEecCH--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDG---V---VKQCRGKNLFFSTDV-- 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~---~---~~~~~~~~l~~t~d~-- 72 (480)
.+|.|||+|.+|.+.|.+|+.. |. .++++|-+.-....|++....-.+.|-.. . +.+++ ..+++..-.
T Consensus 27 SrVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLN-P~V~V~~i~~r 103 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLN-PHVSVYDAVTK 103 (287)
T ss_pred CeEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHC-CCcEEEEcccc
Confidence 3799999999999999999998 64 69999987766666655321111112111 1 11111 223322111
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
-+.....++++++..+ +++..+.+...++.-.+++..+|..+-|..
T Consensus 104 ld~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~ 149 (287)
T PTZ00245 104 LDGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLA 149 (287)
T ss_pred cCCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhh
Confidence 1123466777777542 355666776667767788888888766544
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.61 Score=49.33 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=57.8
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.+|+|||. |.+|..+..+|.+. || +|+.++...+.+ .++.+..++++.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~--gf~g~v~~Vnp~~~~i------------------------~G~~~~~sl~~l 61 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG--GYKGKIYPVNPKAGEI------------------------LGVKAYPSVLEI 61 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC--CCCCcEEEECCCCCcc------------------------CCccccCCHHHC
Confidence 47999999 88999999999987 77 565555432211 124555667775
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
-...|++++|+|.. .+..+++++... .-..+|++.|.++
T Consensus 62 p~~~Dlavi~vp~~---------------~~~~~l~e~~~~-gv~~~vi~s~gf~ 100 (447)
T TIGR02717 62 PDPVDLAVIVVPAK---------------YVPQVVEECGEK-GVKGAVVITAGFK 100 (447)
T ss_pred CCCCCEEEEecCHH---------------HHHHHHHHHHhc-CCCEEEEECCCcc
Confidence 56789999999842 345666666553 3345666666553
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.3 Score=48.45 Aligned_cols=72 Identities=18% Similarity=0.350 Sum_probs=0.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.+ + +..|+....+ +.++++.+
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~---------------------------------t~~l~~~~ 204 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA---------------------------------TKDIPSYT 204 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC---------------------------------chhHHHHH
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.||++|.+++.|.-- -...+++|.+||+.+.
T Consensus 205 ~~ADIvI~Avg~~~li--------------------~~~~vk~GavVIDVgi 236 (295)
T PRK14174 205 RQADILIAAIGKARFI--------------------TADMVKPGAVVIDVGI 236 (295)
T ss_pred HhCCEEEEecCccCcc--------------------CHHHcCCCCEEEEeec
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.24 Score=48.95 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-----
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV----- 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----- 76 (480)
.++|+|||.+|++.+.--...+ .-+++++|+|+++.+.-++ |-..+..|. .....+.|.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-------------d~~~~i~evi~EmTd 260 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGATEFINPK-------------DLKKPIQEVIIEMTD 260 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcceecChh-------------hccccHHHHHHHHhc
Confidence 6899999999999988776663 3589999999999888775 322222221 0011122222
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.+.|+-|-|+..
T Consensus 261 gGvDysfEc~G~ 272 (375)
T KOG0022|consen 261 GGVDYSFECIGN 272 (375)
T ss_pred CCceEEEEecCC
Confidence 478999999874
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.26 Score=49.39 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=62.0
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
+.+|+|+|. .+.+..++..|.+.|.+|.+||....
T Consensus 4 ~m~I~iiG~----------G~~G~~lA~~l~~~G~~V~~~~r~~~----------------------------------- 38 (308)
T PRK14619 4 PKTIAILGA----------GAWGSTLAGLASANGHRVRVWSRRSG----------------------------------- 38 (308)
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------------
Confidence 468999998 46889999999999999999997421
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHH-hcCCCCEEEEcCCCCCh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYD-NMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~-~~~~~~~viD~~~~~~~ 452 (480)
.++.++++++|+|+++++.+..+++ .+.+.. .+++..+|+|+.+=+++
T Consensus 39 ~~~~~~~~~advvi~~vp~~~~~~v-~~~l~~~~~~~~~ivi~~s~gi~~ 87 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSMKGVRPV-AEQVQALNLPPETIIVTATKGLDP 87 (308)
T ss_pred CCHHHHHhcCCEEEEECChHHHHHH-HHHHHHhcCCCCcEEEEeCCcccC
Confidence 2467788999999999998755543 244544 24555689998763443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.51 Score=46.74 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=57.4
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
-.+++++|+|+|-+- --+.+++..|.++|++|.+++-..
T Consensus 155 i~l~Gk~vvViG~gg---------~vGkpia~~L~~~gatVtv~~~~t-------------------------------- 193 (283)
T PRK14192 155 IELAGKHAVVVGRSA---------ILGKPMAMMLLNANATVTICHSRT-------------------------------- 193 (283)
T ss_pred CCCCCCEEEEECCcH---------HHHHHHHHHHHhCCCEEEEEeCCc--------------------------------
Confidence 357899999999421 267899999999999999987521
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.+|..+.+ ++.+. +++..+|+|.-
T Consensus 194 ----~~L~~~~~~aDIvI~AtG~~~~--v~~~~----lk~gavViDvg 231 (283)
T PRK14192 194 ----QNLPELVKQADIIVGAVGKPEL--IKKDW----IKQGAVVVDAG 231 (283)
T ss_pred ----hhHHHHhccCCEEEEccCCCCc--CCHHH----cCCCCEEEEEE
Confidence 1345667899999999998875 44433 45556999975
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.11 Score=54.90 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=55.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCC-C-hHHHHhhhcCCCEEE--------ecC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-G-LDGVVKQCRGKNLFF--------STD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~-l~~~~~~~~~~~l~~--------t~d 71 (480)
.+|+|||.|--|++.|..|++. ||.|++|++.+.-.-.+.-|...+..+ . ++..+..+...++++ .-+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 5899999999999999999999 999999998765444343332222211 1 112222111111322 234
Q ss_pred HHHhhccCcEEEEeccCCC
Q 011641 72 VEKHVSEADIVFVSVNTPT 90 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~ 90 (480)
.++..++.|.|++|+.+..
T Consensus 202 ~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 202 LEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHhhCEEEEeccccC
Confidence 5666677899999988754
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.61 Score=48.99 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=73.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA-RLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
.+.+++|+|+|.+ ..+..++..|...|+ +|.+++....... +...++ .
T Consensus 179 ~~~~~~vlViGaG----------~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--------------------~ 228 (423)
T PRK00045 179 DLSGKKVLVIGAG----------EMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--------------------G 228 (423)
T ss_pred CccCCEEEEECch----------HHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--------------------C
Confidence 4678999999963 467888999999997 7999998654322 222221 0
Q ss_pred ceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhc----CCCCEEEEcCC--CCChhhhhhcCcEEEEe
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM----QKPAFVFDGRN--VVDANKLREIGFIVYSI 465 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~----~~~~~viD~~~--~~~~~~~~~~g~~y~~i 465 (480)
......++.+++.++|+||.+|..+.+- ++.+.+...+ ..|.+++|.-. =+++.-..-.|..++.+
T Consensus 229 ~~~~~~~~~~~l~~aDvVI~aT~s~~~~-i~~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l~~v~l~~v 300 (423)
T PRK00045 229 EAIPLDELPEALAEADIVISSTGAPHPI-IGKGMVERALKARRHRPLLLVDLAVPRDIEPEVGELPGVYLYDV 300 (423)
T ss_pred cEeeHHHHHHHhccCCEEEECCCCCCcE-EcHHHHHHHHhhccCCCeEEEEeCCCCCCcccccccCCeEEEEH
Confidence 1111245677889999999999987754 4555555543 24679999975 24443222235555554
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.1 Score=52.35 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|+|||.|..|+++|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999986
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.087 Score=54.05 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|.+|++.|..|++. |++|+++|...
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 6899999999999999999999 89999999764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 480 | ||||
| 3tdk_A | 487 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-171 | ||
| 2q3e_A | 467 | Structure Of Human Udp-Glucose Dehydrogenase Comple | 1e-171 | ||
| 3prj_A | 494 | Role Of Packing Defects In The Evolution Of Alloste | 1e-171 | ||
| 3khu_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-171 | ||
| 4edf_A | 494 | Dimeric Hugdh, K94e Length = 494 | 1e-171 | ||
| 3itk_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-171 | ||
| 3tf5_A | 493 | Structure Of Udp-Glucose Dehydrogenase V132 Deletio | 1e-169 | ||
| 2o3j_A | 481 | Structure Of Caenorhabditis Elegans Udp-Glucose Deh | 1e-161 | ||
| 2y0e_A | 478 | Bcec And The Final Step Of Ugds Reaction Length = 4 | 1e-72 | ||
| 2y0c_A | 478 | Bcec Mutation Y10s Length = 478 | 1e-71 | ||
| 2y0d_A | 478 | Bcec Mutation Y10k Length = 478 | 1e-71 | ||
| 4a7p_A | 446 | Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase | 4e-69 | ||
| 3gg2_A | 450 | Crystal Structure Of Udp-Glucose 6-Dehydrogenase Fr | 3e-65 | ||
| 3vtf_A | 444 | Structure Of A Udp-Glucose Dehydrogenase From The H | 1e-52 | ||
| 1mv8_A | 436 | 1.55 A Crystal Structure Of A Ternary Complex Of Gd | 2e-31 | ||
| 1mfz_A | 436 | Partially Refined 2.8 A Crystal Structure Of Gdp-Ma | 4e-30 | ||
| 3g79_A | 478 | Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuro | 7e-26 | ||
| 3ojl_A | 431 | Native Structure Of The Udp-N-Acetyl-Mannosamine De | 9e-25 | ||
| 3pid_A | 432 | The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-T | 2e-22 | ||
| 3phl_A | 424 | The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 4 | 2e-22 | ||
| 1dli_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 4e-19 | ||
| 1dlj_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 5e-18 |
| >pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Length = 487 | Back alignment and structure |
|
| >pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed With Nadh And Udp-Glucose Length = 467 | Back alignment and structure |
|
| >pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And Induced Fit In Human Udp-Glucose Dehydrogenase. Length = 494 | Back alignment and structure |
|
| >pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Glu161gln, In Complex With Thiohemiacetal Intermediate Length = 467 | Back alignment and structure |
|
| >pdb|4EDF|A Chain A, Dimeric Hugdh, K94e Length = 494 | Back alignment and structure |
|
| >pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Thr131ala, Apo Form. Length = 467 | Back alignment and structure |
|
| >pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion Length = 493 | Back alignment and structure |
|
| >pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose Dehydrogenase Length = 481 | Back alignment and structure |
|
| >pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction Length = 478 | Back alignment and structure |
|
| >pdb|2Y0C|A Chain A, Bcec Mutation Y10s Length = 478 | Back alignment and structure |
|
| >pdb|2Y0D|A Chain A, Bcec Mutation Y10k Length = 478 | Back alignment and structure |
|
| >pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From Sphingomonas Elodea Length = 446 | Back alignment and structure |
|
| >pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From Porphyromonas Gingivalis Bound To Product Udp-Glucuronate Length = 450 | Back alignment and structure |
|
| >pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The Hyperthermophilic Archaeon Pyrobaculum Islandicum Length = 444 | Back alignment and structure |
|
| >pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose Dehydrogenase From P. Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase From Methanosarcina Mazei Go1 Length = 478 | Back alignment and structure |
|
| >pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine Dehydrogenase Cap5o From Staphylococcus Aureus Length = 431 | Back alignment and structure |
|
| >pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal Six- Histidine Tag Length = 432 | Back alignment and structure |
|
| >pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 424 | Back alignment and structure |
|
| >pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
| >pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 480 | |||
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 0.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 0.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 1e-159 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 1e-153 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 1e-134 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 1e-105 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 1e-104 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 1e-104 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 4e-58 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 5e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 6e-04 |
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Length = 481 | Back alignment and structure |
|---|
Score = 792 bits (2049), Expect = 0.0
Identities = 271/483 (56%), Positives = 352/483 (72%), Gaps = 14/483 (2%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+ K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I WNSD+LPIYEPGLD +V
Sbjct: 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFA 68
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
RG+NLFFS+D+ K ++EAD++F+SVNTPTK G G G A DL Y ES +R IA +
Sbjct: 69 ARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGP 128
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177
KIVVEKSTVPVK AE+I IL K +KFQ+LSNPEFLAEGTA++DL NPDRVLIG
Sbjct: 129 KIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIG 188
Query: 178 GRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237
G +PEG +AV L +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++SA+C
Sbjct: 189 GESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248
Query: 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297
EATGA +S+VA AVG D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE LP+VA+YW+
Sbjct: 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQ 308
Query: 298 QVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK 357
VI IN++Q+ RF ++++A +FNTV++KKIA+ GFAFKK+TGDTRE+ AI V K L+ +
Sbjct: 309 GVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEH 368
Query: 358 ARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVC 417
A+LS+YDP+V + Q+ DL D + ++V D Y A + AH +
Sbjct: 369 AKLSVYDPKVQKSQMLNDLASVTSAQDVE-----------RLITVESDPYAAARGAHAIV 417
Query: 418 ILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMP 477
+LTEWDEF L+Y +I+++MQ PA +FDGR ++D LREIGF ++IG D
Sbjct: 418 VLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQAYNLFG 477
Query: 478 AVA 480
Sbjct: 478 TAG 480
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467 | Back alignment and structure |
|---|
Score = 792 bits (2047), Expect = 0.0
Identities = 295/472 (62%), Positives = 360/472 (76%), Gaps = 12/472 (2%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+ KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+
Sbjct: 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES 64
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
CRGKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S
Sbjct: 65 CRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGY 124
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
KIV EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG
Sbjct: 125 KIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGD 184
Query: 180 ETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
ETPEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEA
Sbjct: 185 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244
Query: 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299
TGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QV
Sbjct: 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQV 304
Query: 300 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAR 359
I +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A
Sbjct: 305 IDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAH 364
Query: 360 LSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCIL 419
L IYDP+V +QI DL+ D + + V++ D YEA AH V I
Sbjct: 365 LHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVIC 415
Query: 420 TEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGKPL 469
TEWD FK LDY+RI+ M KPAF+FDGR V+D N+L+ IGF + +IGK +
Sbjct: 416 TEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV 467
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* Length = 478 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-159
Identities = 163/474 (34%), Positives = 256/474 (54%), Gaps = 31/474 (6%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+ IG+G VG T A +A I +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 10 NLTIIGSGSVGLVTGACLA----DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIAR 65
Query: 61 -CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 66 NRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 DKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175
K++V+KSTVPV TAE + L F ++SNPEFL EG A+ D PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G +
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQ 298
Query: 295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL 354
K V +N QK +++VA ++ + A+ G AFK +T D RE P+ ++ LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAH 414
AR++ YDP V +++ +R + P+ ++++S V D +A +DA
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIA----------LDLADHPSWLERLSFVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + P +FDGRN+ + + E G + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Length = 450 | Back alignment and structure |
|---|
Score = 443 bits (1143), Expect = e-153
Identities = 160/474 (33%), Positives = 235/474 (49%), Gaps = 47/474 (9%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
I +G GYVG + A + V +D ++I NS +PIYEPGL+ ++ +
Sbjct: 4 DIAVVGIGYVGLVSATCFA----ELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR 59
Query: 61 -CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
+ L F T++E+ V EADI+F++V TP G +AD++Y AAR I
Sbjct: 60 NVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSR 114
Query: 120 DKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175
++V KSTVPV + I K L I F I SNPEFL EG AI D PDRV+
Sbjct: 115 YILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVV 174
Query: 176 IGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
+G + +A + + +Y + R+L ++ SAE++K AANA LA RIS +N ++
Sbjct: 175 VGV----DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVA 230
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294
LCE GA+VS V +G+DSRIG KFL G+GGSCF KD+ L+ E NG E
Sbjct: 231 NLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--ME 288
Query: 295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL 354
+ V ++N+ QKS ++ V + +A+ G +FK T D RE P++ + + LL
Sbjct: 289 VLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLL 348
Query: 355 GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAH 414
R+ +YDP M + +V D Y+A + A
Sbjct: 349 EVGCRVRVYDPVA----------MKEAQKRLG-----------DKVEYTTDMYDAVRGAE 387
Query: 415 GVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
+ +TEW EF+ D+ + M V DGRNV + + F + +IG
Sbjct: 388 ALFHVTEWKEFRMPDWSALSQAMAASL-VIDGRNVYE--LPADSDFTLLNIGNS 438
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Length = 436 | Back alignment and structure |
|---|
Score = 393 bits (1013), Expect = e-134
Identities = 108/467 (23%), Positives = 194/467 (41%), Gaps = 50/467 (10%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ +++Q
Sbjct: 2 RISIFGLGYVGAVCAGCLS----ARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ 57
Query: 61 -CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
+ L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I +
Sbjct: 58 GRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIRE 112
Query: 120 D---KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPD 172
VV +STV T + + + G+ F + +NPEFL E TAI+D P
Sbjct: 113 KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPP 172
Query: 173 RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232
+IG ++ L+++Y + I+ + AE+ K N + A +++ N
Sbjct: 173 MTVIGE----LDKQTGDLLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANE 226
Query: 233 MSALCEATGANVSQVAFAVGTDSRIG--PKFLNASVGFGGSCFQKDILNLVYICECNGLP 290
+ + +A G + +V + D ++ ++ FGGSC KD+ L Y +
Sbjct: 227 IGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE 286
Query: 291 EVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVC 350
+++ N Q + + + + +K+ +LG +FK T D RE+P +++
Sbjct: 287 --HPMLGSLMRSNSNQVQKAFDLI-----TSHDTRKVGLLGLSFKAGTDDLRESPLVELA 339
Query: 351 KGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEAT 410
+ L+G L I+D V R NK + + +V D E
Sbjct: 340 EMLIGKGYELRIFDRNVEY---ARVHGANKEYIESKIPH--------VSSLLVSDLDEVV 388
Query: 411 KDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457
+ + + + F L + + D + +
Sbjct: 389 ASSDVLVLGNGDELFVDLVNKT----PSGKK-LVDLVGFMPHTTTAQ 430
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = e-105
Identities = 90/432 (20%), Positives = 174/432 (40%), Gaps = 48/432 (11%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +K +
Sbjct: 2 KIAVAGSGYVGLSLGVLLSLQ---NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ 58
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
++ + D + EA++V ++ T D + E+ + + V+
Sbjct: 59 L-SIKATLDSKAAYKEAELVIIATPTNYN----SRINYFDTQHVETVIKEVLSVNS-HAT 112
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG---R 179
++ KST+P+ + + +I+ +PEFL E A+ D P R+++
Sbjct: 113 LIIKSTIPIGFITEMRQKFQ------TDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166
Query: 180 ETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
A K + + + +L AE KL AN +LA R++ N + E
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE 226
Query: 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQ 298
+ N + + D RIG + N S G+GG KD L + N +P+ +
Sbjct: 227 SRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIPQ--TLIEA 282
Query: 299 VIKINDYQKSRFVNRVVASMFNTVSN-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK 357
++ N+ +KS +++ + S K + V K ++ + RE+ DV L
Sbjct: 283 IVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKD 342
Query: 358 ARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVC 417
++ IY+P + + + + Q +V D K A+ +
Sbjct: 343 IKIIIYEPMLNKLESE------------------------DQSVLVNDLENFKKQANIIV 378
Query: 418 ILTEWDEFKTLD 429
+E + +
Sbjct: 379 TNRYDNELQDVK 390
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-104
Identities = 95/427 (22%), Positives = 168/427 (39%), Gaps = 54/427 (12%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+KI G GYVG +IA EV +DI ++++ N PI + + + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQN---HEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
+ N +TD AD V ++ T + + E+ R + +++ +
Sbjct: 93 -KPLNFRATTDKHDAYRNADYVIIATPTDYD----PKTNYFNTSTVEAVIRDVTEINP-N 146
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
+++ KST+PV I++ L ++ +PEFL EG A+ D +P R++IG
Sbjct: 147 AVMIIKSTIPVGFTRDIKERLG------IDNVIFSPEFLREGRALYDNLHPSRIVIGE-- 198
Query: 181 TPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
+A + + + +D L T+ AE KL AN +LA R++ N + + E+
Sbjct: 199 --RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAES 256
Query: 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299
G N Q+ V D RIG + N S G+GG C KD L+ E + +
Sbjct: 257 QGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYESVPNNII----AAI 312
Query: 300 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAR 359
+ N +K + ++A K + V K + + R + + K +
Sbjct: 313 VDANRTRKDFIADSILA-----RKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIP 367
Query: 360 LSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCIL 419
+ IY+P + ED+ VV D ++A +
Sbjct: 368 VIIYEPVMQEDEF-------------------------FNSRVVRDLNAFKQEADVIISN 402
Query: 420 TEWDEFK 426
+E
Sbjct: 403 RMAEELA 409
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Length = 478 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-104
Identities = 113/490 (23%), Positives = 194/490 (39%), Gaps = 58/490 (11%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI----SVSRINAWNSDQLPIY--EPGL 54
+ KI +G GYVG P + A +V S +I N + P+ EPGL
Sbjct: 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGL 77
Query: 55 DGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVI 113
+ ++ + + + D + +SE D V +++ TP D + R +
Sbjct: 78 EELIGKVVKAGKFECTPDFSR-ISELDAVTLAIQTPFANPKDLE---PDFSALIDGIRNV 133
Query: 114 ADVSKSDKIVVEKSTVPVKTAEAIEK-ILTHNSK---GIKFQILSNPEFLAEGTAIQDLF 169
K +VV +ST+ T E + K IL S G F + PE + G ++++
Sbjct: 134 GKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIR 193
Query: 170 NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229
DR+ +GG K L Y+ + +++ + +AE++K A N F +I++
Sbjct: 194 EHDRI-VGG-IDEASTKRAVEL---YSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAA 248
Query: 230 VNAMSALCEATGANVSQVAFAVGT--DSRIGPKFLNASVGFGGSCFQKDILNLVYICECN 287
+N ++ CEA G NV V V + I L G GG C KD +L +
Sbjct: 249 INQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308
Query: 288 GLP-EVAEYWKQVIK----INDYQKSRFVNRVVASMFN---TVSNKKIAVLGFAFKKDTG 339
+ E + +ND+ + N VA++ + K+A+LG+AF KD+
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368
Query: 340 DTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399
D R TP+ L A + ++DP V
Sbjct: 369 DARNTPSEPYRDLCLKAGASVMVHDPYVVN---------------------------YPG 401
Query: 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPA-FVFDGRNVVDANKLREI 458
V + + E ++A + +L + +L K + DGRNV++ ++
Sbjct: 402 VEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFIGK 461
Query: 459 GFIVYSIGKP 468
GF+ IG+
Sbjct: 462 GFVYKGIGRE 471
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* Length = 431 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 4e-58
Identities = 115/482 (23%), Positives = 195/482 (40%), Gaps = 78/482 (16%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
K+ +G GY+G PT + A ++V VDI+ I+ + Q+ I EPGL V ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 63 GK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
L ST E +D+ ++V TP ++ D++ A I K
Sbjct: 71 SSGKLKVSTTPE----ASDVFIIAVPTPNND---DQYRSCDISLVMRALDSILPFLKKGN 123
Query: 122 IVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
++ +ST+ KT + K + N G ++ PE + G +++L + +R+ IGG
Sbjct: 124 TIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IGG 182
Query: 179 RETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
T +A K + Y +V + ++ T+ +AE+SKL N + I+ N ++ +C
Sbjct: 183 -VTKACIEAGKRV---YRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKICN 237
Query: 239 ATGANVSQVAFAVGTDSRI-----GPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA 293
NV V R+ GP G GG C D ++
Sbjct: 238 NLNINVLDVIEMANKHPRVNIHQPGP-------GVGGHCLAVDPYFIIAK---------D 281
Query: 294 EYWKQVIK----INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDV 349
++I+ IN+ +V + +S K+ V G +K D D RE+PA D+
Sbjct: 282 PENAKLIQTGREINNS-MPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDI 340
Query: 350 CKGLLGDK-ARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYE 408
+ L + + YDP V D ++ D++
Sbjct: 341 YELLNQEPDIEVCAYDPHVELDFVEHDMS------------------------------H 370
Query: 409 ATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468
A KDA V IL++ EFK L K +FD +NVV ++ + + +I
Sbjct: 371 AVKDASLVLILSDHSEFKNLSDSHFDKMKHK--VIFDTKNVVKSSFEDVLYYNYGNIFNF 428
Query: 469 LD 470
+D
Sbjct: 429 ID 430
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 5e-14
Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 33/223 (14%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGVV 58
K+C G G G T++ +A +EV V+ + W +D+L + DG
Sbjct: 4 KVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62
Query: 59 KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSK 118
+ + + + D E +S AD+V ++V E + +A +
Sbjct: 63 TEVKSRPKVITKDPEIAISGADVVILTVPA---------------FAHEGYFQAMAPYVQ 107
Query: 119 SDKIVVEKSTVPVKT--AEAIEKILTHNSKGIKFQILSNPEFLAE----GTAIQDLFNPD 172
++V +P + IL + + + G ++ L
Sbjct: 108 DSALIV---GLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKS 164
Query: 173 RVLI----GGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211
+ G +T + ++ L + L + S
Sbjct: 165 VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 8e-10
Identities = 88/577 (15%), Positives = 157/577 (27%), Gaps = 188/577 (32%)
Query: 32 VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEADIVFVSVNTPT 90
+D D L ++E V K++ D+ K + S+ +I + + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAF---VDNFDCKDV---QDMPKSILSKEEIDHI-IMSKD 59
Query: 91 KTQGLGAGKAADLTYW-------ESAARVIADVSKSD------KIVVE---KSTVPVKTA 134
G +W E + + +V + + I E S +
Sbjct: 60 AVSGT------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 135 EAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI---GGRETPEGQK---AV 188
E +++ N K+ + +L A+ +L VLI G G K A+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SG-KTWVAL 168
Query: 189 KALKD----------VYAHWV-------PEDRI-------------------------LT 206
++ W+ PE + L
Sbjct: 169 DVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 207 TNLWSAELSKLAA-----NAFL----AQRISSVNAMSALCE--ATGANVSQVAFAVGTDS 255
+ AEL +L N L Q + NA + C+ T V + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAAT 285
Query: 256 RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA---------------------- 293
+ S+ K +L C LP
Sbjct: 286 TTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 294 EYWKQV--------IK--IN----DYQKSRFVNRVVASMFNTVSNKKI--AVLG-FAFKK 336
+ WK V I+ +N + F V F + I +L F
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FP--PSAHIPTILLSLIWFDV 399
Query: 337 DTGDTRETPAIDVCKGLL---GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393
D L+ ++ +SI I +L + K + ++ LH
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPS-------IYLELKV-KLENEYALHRS--- 448
Query: 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFK-TLD---YQRI-Y-----DNMQK---- 439
+V D Y K D LD Y I + ++ ++
Sbjct: 449 --IV-------DHYNIPKTFDS------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 440 PAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDM 476
D R + K+R + G L+ L+ +
Sbjct: 494 RMVFLDFRFL--EQKIRHDSTAWNASGSILNT-LQQL 527
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} Length = 316 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 35/268 (13%), Positives = 75/268 (27%), Gaps = 94/268 (35%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI GAG +G + + L +V ++D + I A + L G + V
Sbjct: 5 KIAIAGAGAMGS-RLGI-MLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVAN--- 59
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
+F +++ + D++ KA L ++ + I +
Sbjct: 60 -LPIFSPEEIDHQNEQVDLIIALT------------KAQQL---DAMFKAIQPMITEKTY 103
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG----- 177
V+ N G+ + + L + + +L+G
Sbjct: 104 VL----------------CLLN--GL-----GHEDVLEK------YVPKENILVGITMWT 134
Query: 178 -------------------GRETPEGQKAVKALKDVY------AHWVPEDRILTTNLWSA 212
P G+K + DV+ + + + +W
Sbjct: 135 AGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSYS--SNVRYS-IW-- 189
Query: 213 ELSKLAANAFLAQRISSVNAMSALCEAT 240
K N ++N + + +
Sbjct: 190 --RKACVNG-------TLNGLCTILDCN 208
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 480 | |||
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 100.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 100.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 100.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 100.0 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 100.0 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.98 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.98 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.97 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.97 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.97 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.97 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.96 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.95 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.94 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.94 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.93 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.93 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.92 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.92 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.91 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.91 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.91 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.91 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.88 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.86 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.86 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.86 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.86 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.86 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.86 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.86 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.85 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.84 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.84 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.83 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.78 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.77 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.76 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.74 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.73 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.72 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.72 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.71 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.71 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.71 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.7 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.69 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.69 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.67 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.67 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.67 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.67 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.66 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.65 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.65 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.64 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.64 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.62 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.62 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.6 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.6 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.58 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.56 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.55 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.53 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.52 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.52 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.49 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.44 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.41 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.39 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.38 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.3 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.27 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.24 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.23 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.21 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.18 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.15 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 99.13 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.73 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.11 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.07 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.03 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.02 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.98 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.98 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.97 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.96 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.94 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.91 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.91 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.9 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.89 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.88 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.88 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.87 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.86 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.85 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.84 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.84 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.83 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.81 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.8 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.8 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.8 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.79 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.79 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.79 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.78 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.78 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.76 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.76 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.75 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.74 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.74 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.73 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.71 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.71 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.7 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.69 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.67 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.66 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.64 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.62 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.6 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.59 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.58 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.57 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.54 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.54 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.52 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.52 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.52 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.51 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.5 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.49 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.49 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.47 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.45 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.45 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.43 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.43 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.42 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.42 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.41 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.4 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.39 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.39 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.39 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.38 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.38 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.37 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.36 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.35 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.34 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.33 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.32 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.32 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.31 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.31 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.26 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.26 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.26 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.26 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.25 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.24 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.23 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.22 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.2 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.2 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.19 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.19 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.15 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.14 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.13 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.13 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.12 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.12 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.11 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.11 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.11 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.1 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.1 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.09 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.09 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.08 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.07 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.07 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.07 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.04 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.04 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.03 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.02 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.02 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.01 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.99 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.97 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.93 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.93 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.92 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.92 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.91 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.91 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.91 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.9 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.89 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.87 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.85 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.83 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.8 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.79 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.78 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.77 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.76 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.74 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.73 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.7 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.7 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.68 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.68 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.68 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.67 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.67 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.65 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.63 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.61 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.6 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.59 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.58 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.58 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.56 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.56 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.55 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.54 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.54 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.52 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.52 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.52 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.52 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.5 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.5 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.49 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.49 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.48 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.47 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.47 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.47 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.47 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.46 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.44 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.44 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.42 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.39 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.36 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.35 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 97.35 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.33 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.31 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.31 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.3 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.3 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.29 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.29 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.28 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.28 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.27 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.26 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.24 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.24 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.23 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.23 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.22 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.22 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 97.21 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.21 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.21 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.2 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.19 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 97.18 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.18 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.17 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.17 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.16 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.15 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 97.14 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.13 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.13 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 97.12 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.12 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.12 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.12 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.12 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.11 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.1 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.1 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.09 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.09 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.09 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.07 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.07 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.07 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.07 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.06 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.06 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 97.04 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.02 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.01 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.01 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.99 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.99 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 96.98 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.95 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.94 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.91 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.91 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.9 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.9 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 96.86 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.85 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.84 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.83 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.83 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.81 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.79 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.78 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.77 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.77 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 96.72 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.72 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.71 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.69 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 96.69 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.68 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.68 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.68 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.66 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.66 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.65 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.62 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.62 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.61 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.58 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.54 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.54 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.53 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.53 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 96.52 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.52 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.51 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.49 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.49 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 96.48 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.46 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.46 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 96.43 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.43 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 96.43 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.43 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.42 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.41 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.39 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.38 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 96.35 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 96.33 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.32 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.3 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.3 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.29 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.28 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.24 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.23 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.23 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.22 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.2 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.2 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.19 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.19 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.18 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.18 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 96.18 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 96.16 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.14 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.13 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.12 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 96.1 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.1 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.07 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.07 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.04 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.03 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.99 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.99 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.99 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 95.98 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.98 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 95.97 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.94 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.93 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 95.91 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.87 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.86 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 95.86 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.84 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.82 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.81 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.81 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.79 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.77 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 95.77 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.76 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.76 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.71 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.71 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.69 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.66 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.56 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.56 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.55 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 95.55 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.54 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.54 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.54 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.53 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.52 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 95.52 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.51 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.47 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.47 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.46 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 95.45 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 95.45 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 95.44 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.41 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.39 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 95.35 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.33 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.33 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 95.32 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.31 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 95.28 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.26 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.24 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.23 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.23 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.23 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.23 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 95.19 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 95.19 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.15 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.13 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.13 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 95.1 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.1 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 95.08 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.03 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.01 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.01 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.01 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 95.01 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.01 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.99 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.98 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.95 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.91 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.89 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 94.81 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 94.81 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.8 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 94.7 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.7 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.69 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.63 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 94.63 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.62 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.55 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.54 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.53 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.5 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 94.5 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.49 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.48 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.45 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 94.45 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.4 |
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-95 Score=747.73 Aligned_cols=419 Identities=35% Similarity=0.546 Sum_probs=384.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|.+|+|||+||||+++|..|+++ ||+|+|+|+|+++++.|++|+.|++||++++++.+ +..+++++|+|+++++++|
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~--G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a 98 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL--GHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT 98 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence 57899999999999999999998 99999999999999999999999999999999876 5678999999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCC---CCcEEEEecCCCcchHHHH-HHHHHhcCCCCceEEeeC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSK---SDKIVVEKSTVPVKTAEAI-EKILTHNSKGIKFQILSN 155 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~---~~~iVi~~STv~~gt~~~l-~~~l~~~~~g~~~~v~~~ 155 (480)
|++|||||||.+.++ .+|+++++++++.|+++++ ++++||++||+||||++++ .+++++.+++.+|+++|+
T Consensus 99 d~~~I~VpTP~~~d~-----~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~ 173 (444)
T 3vtf_A 99 DATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASN 173 (444)
T ss_dssp SEEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEEC
T ss_pred CceEEEecCCCCCCC-----CCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecC
Confidence 999999999998755 8999999999999999885 5789999999999999985 566776655789999999
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
|||+.||++++++.+|+|||+|+. ++++.+.++++|+.+. .++.++++++||++|+++|+|++++|+|+||++.
T Consensus 174 PErl~eG~a~~d~~~~~riViG~~----~~~a~~~~~~ly~~~~--~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ 247 (444)
T 3vtf_A 174 PEFLREGSALEDFFKPDRIVIGAG----DERAASFLLDVYKAVD--APKLVMKPREAELVKYASNVFLALKISFANEVGL 247 (444)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHTTTSC--SCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccccccCCcEEEcCC----CHHHHHHHHHHHhccC--CCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 4778899999999874 3567789999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHH
Q 011641 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV 315 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (480)
+|+++|+|+++|++++++++|+|++|++||+||||||||||+++|++.|++.|++ .+++++++++|+.||+++++++.
T Consensus 248 ice~~GiDv~eV~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~--~~li~a~~~iN~~~~~~vv~~l~ 325 (444)
T 3vtf_A 248 LAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLE--MAISKAVLRVNEYMPRYAVQLLE 325 (444)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCC--HHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 68999999999999999999998
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+ +.++++||+|||+||||||+|+|+||++.|++.|.++|++|.+|||++.++.. ..++
T Consensus 326 ~~~-~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~-~~~~------------------ 385 (444)
T 3vtf_A 326 ERL-GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKAR-AVLG------------------ 385 (444)
T ss_dssp HHH-TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHH-HHHG------------------
T ss_pred HHc-cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHH-HhcC------------------
Confidence 876 57899999999999999999999999999999999999999999999965443 2232
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 468 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~ 468 (480)
..+++++++++++++||+|||+|+|++|+++|+ +.+ +|||+||++++++ ...|.||||.
T Consensus 386 --~~~~~~~~~~~a~~~aDavvi~t~h~ef~~ld~-------~~~-vv~D~Rni~~~~~----~~~y~gigWs 444 (444)
T 3vtf_A 386 --DSVTYVEDPQALLDQVEGVIIATAWPQYEGLDY-------RGK-VVVDGRYVKKARE----AKIYEGVAWA 444 (444)
T ss_dssp --GGSEECSCHHHHHHHCSEEEECSCCGGGGGSCC-------TTC-EEEESSCCGGGGG----SSEEEESSCC
T ss_pred --CCceecCCHHHHHhCCCEEEEccCCHHHhCCCc-------CCC-EEEECCCCCChhh----hcceeeeecC
Confidence 357889999999999999999999999999986 345 9999999999754 4579999974
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-92 Score=736.01 Aligned_cols=433 Identities=37% Similarity=0.626 Sum_probs=396.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+||||++||.+|+++ ||+|++||+++++++.|+++..+++||++++++.+ +..+++++|+|+++++++||
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 4799999999999999999998 99999999999999999999999999999998865 35678999999998999999
Q ss_pred EEEEeccCCCCC-CCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKT-QGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~-~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||||.+. ++ .+|++++++++++|.+.++++++||++||++|||++++.+.+++...+.+|.++++|||+
T Consensus 87 vvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a 161 (446)
T 4a7p_A 87 AVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFL 161 (446)
T ss_dssp EEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCC
T ss_pred EEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccc
Confidence 999999999854 33 899999999999999999999999999999999999998888775444679999999999
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC--eEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED--RILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
.||.+++++.+|++||+|+. ++++.++++++|+.+.+.. ++..+++++||++|+++|++++++|+++||++.+|
T Consensus 162 ~eG~a~~d~~~p~~ivvG~~----~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~ 237 (446)
T 4a7p_A 162 REGAAIEDFKRPDRVVVGTE----DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC 237 (446)
T ss_dssp CTTSHHHHHHSCSCEEEECS----CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCCCEEEEeCC----cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 4789999999999986422 57888999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++|+++++++||+|+++++||+||||+|+|||++++++.|++.|++ .+++++++++|++||+++++++.+.
T Consensus 238 ~~~GiD~~~v~~~~~~~~rig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~--~~l~~~~~~iN~~~~~~~~~~i~~~ 315 (446)
T 4a7p_A 238 EQVGADVQEVSRGIGMDNRIGGKFLHAGPGYGGSCFPKDTLALMKTAADNETP--LRIVEATVQVNDARKRAMGRKVIKA 315 (446)
T ss_dssp HHTTCCHHHHHHHHHTSTTC---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHhcCCCCCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.++++||+|||+||||||+|+||||++.|++.|.++|++|.+|||++.++. ... +
T Consensus 316 l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~---------------------~ 373 (446)
T 4a7p_A 316 MGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQA-SKM---------------------L 373 (446)
T ss_dssp TTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHH-GGG---------------------C
T ss_pred hcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhH-HHh---------------------c
Confidence 987899999999999999999999999999999999999999999999996432 221 1
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCC
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 470 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~ 470 (480)
+++++++++++++++||+|||+|+|++|+++||+.+.+.|+.| +|||+||+++++.+++.||.|+||||+.+
T Consensus 374 ~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~iG~~~~ 445 (446)
T 4a7p_A 374 TDVEFVENPYAAADGADALVIVTEWDAFRALDLTRIKNSLKSP-VLVDLRNIYPPAELERAGLQYTGVGKPSR 445 (446)
T ss_dssp SSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCHHHHHTTBSSC-BEECSSCCSCHHHHHHTTCBCCCSSCC--
T ss_pred CCceEecChhHHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCCC-EEEECCCCCCHHHHHhcCCEEEEecCCCC
Confidence 3567888999999999999999999999999999999999988 89999999999999999999999999743
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-88 Score=708.81 Aligned_cols=432 Identities=37% Similarity=0.619 Sum_probs=392.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..+++++++++++.+ ...+++++++|+++++++||
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD 80 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD 80 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence 7999999999999999999998 99999999999999999999999999999987754 33578999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC----CCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK----GIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----g~~~~v~~~P 156 (480)
+||+|||||.+.++ .+|++++++++++|.++++++++||++||++|||++++.+.+++... +.+|.++++|
T Consensus 81 vViiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~P 155 (450)
T 3gg2_A 81 IIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNP 155 (450)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred EEEEEcCCCcccCC-----CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEech
Confidence 99999999987644 89999999999999999999999999999999999999888766431 3679999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-CeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~-~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
|++.+|.+.+++.+|+++++|+. ++++.++++++|+.+.+. .+++.+++++||++|+++|++++++++++||++.
T Consensus 156 e~a~eG~~~~~~~~p~~ivvG~~----~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 231 (450)
T 3gg2_A 156 EFLKEGNAIDDFMKPDRVVVGVD----SDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231 (450)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhccCCCEEEEEcC----CHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 478999999999988632 3577899999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHH
Q 011641 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV 315 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (480)
+|+++|+|+++|+++++++||+|+++++||+||||+|+|||++++++.|++.|++ .+++++++++|+.||+++++++.
T Consensus 232 l~~~~Gid~~~v~~~~~~~~rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~iN~~~~~~~~~~~~ 309 (450)
T 3gg2_A 232 LCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--MEVLEAVERVNEKQKSILFDKFS 309 (450)
T ss_dssp HHHHHTCCHHHHHHHHHTSTTTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCCCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+++.++++||+||||||||||+|+|+||++.|++.|.++|++|.+|||++.++. ...++
T Consensus 310 ~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~------------------ 370 (450)
T 3gg2_A 310 TYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEA-QKRLG------------------ 370 (450)
T ss_dssp HHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHH-HHHHG------------------
T ss_pred HHhcccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHH-HHhcC------------------
Confidence 99987899999999999999999999999999999999999999999999997532 22221
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 470 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~ 470 (480)
..+++++++++++++||+|||+|+|++|+++||+.+.+.|+.| +|||+||+++++ ++.||.|+||||+..
T Consensus 371 --~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~--~~~g~~y~~ig~~~~ 440 (450)
T 3gg2_A 371 --DKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVYELP--ADSDFTLLNIGNSAI 440 (450)
T ss_dssp --GGSEECSSHHHHTTTCSCEEECSCCGGGSSCCHHHHHHHSSSC-EEEESSCCCCCC------CEEEECC----
T ss_pred --ccceecCCHHHHhcCCCEEEEccCCHHHhhcCHHHHHHhcCCC-EEEECCCCCChH--HhCCCEEEEeccccc
Confidence 2477889999999999999999999999999999999999988 899999999988 789999999999754
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-88 Score=709.05 Aligned_cols=430 Identities=26% Similarity=0.397 Sum_probs=389.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHH----HHHHHHcCCCCC--cCCChHHHHhh-hcCCCEEEecCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS----RINAWNSDQLPI--YEPGLDGVVKQ-CRGKNLFFSTDV 72 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~----~v~~l~~~~~~~--~e~~l~~~~~~-~~~~~l~~t~d~ 72 (480)
||||+|||+|+||+++|.+|+++ +|| +|++||++++ +++.++++..++ +|+++++++.+ ...+++++|++
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 58999999999999999999986 479 9999999999 999999999999 89999988764 33578999999
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHH-HHHh-cCC--CC
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK-ILTH-NSK--GI 148 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~-~~~--g~ 148 (480)
.+++++||+||+|||||.+.++ ...+|++++++++++|.++++++++||++||++|||++++.+ ++++ .+. +.
T Consensus 96 ~ea~~~aDvViiaVptp~~~~~---~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~ 172 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPFANPK---DLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGE 172 (478)
T ss_dssp GGGGGGCSEEEECCCCCCCSSC---CSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTT
T ss_pred HHHHhcCCEEEEecCCchhccC---CccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence 5679999999999999986643 112899999999999999999999999999999999999875 5633 332 46
Q ss_pred ceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc-CCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~-~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
+|.++++|||+.||.+..++.++++||+|++ +++.++++++|+.+ .. .+++.+++++||++|+++|+|++++|
T Consensus 173 d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~-----~~~~~~~~~ly~~~~~~-~~~~~~~~~~aE~~Kl~~N~~~a~~I 246 (478)
T 3g79_A 173 DFALAHAPERVMVGRLLKNIREHDRIVGGID-----EASTKRAVELYSPVLTV-GQVIPMSATAAEVTKTAENTFRDLQI 246 (478)
T ss_dssp TBEEEECCCCCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHGGGCSS-CCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeCCccCCccchhhhhcCCcEEEEeCC-----HHHHHHHHHHHhhhccC-CeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999887764 77889999999998 53 57888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCC--CCCCCCccCCCCccccchhHhHHHHHHHHHHCCCC-----hhhHHHHHHH
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGTDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP-----EVAEYWKQVI 300 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~~--~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~-----~~~~~~~~~~ 300 (480)
+++||++.+|+++|+|+++|+++++++| |++.++++||+||||+|||||++++++.|++.|++ -..+++++++
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~~~~~~ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~ 326 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLAR 326 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSCCSSSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCchhhhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHH
Confidence 9999999999999999999999999999 88899999999999999999999999999999965 1257999999
Q ss_pred HHhHHhHHHHHHHHHHHhcC---cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhh
Q 011641 301 KINDYQKSRFVNRVVASMFN---TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLT 377 (480)
Q Consensus 301 ~~N~~~~~~~~~~~~~~l~~---~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~ 377 (480)
++|+.||+++++++.+.+.+ .++++||+|||+||||||+|+|+||++.|++.|+++|++|.+|||++.. +
T Consensus 327 ~iN~~~~~~~~~~i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~------~- 399 (478)
T 3g79_A 327 KVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN------Y- 399 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC------B-
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc------c-
Confidence 99999999999999998843 6889999999999999999999999999999999999999999999972 1
Q ss_pred ccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcC--CCCEEEEcCCCCChhhh
Q 011641 378 MNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ--KPAFVFDGRNVVDANKL 455 (480)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~--~~~~viD~~~~~~~~~~ 455 (480)
+.+.++.++++++++||+|||+|+|++|+++||+.+.+.|+ .| +|||+||+++++++
T Consensus 400 --------------------~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~-~i~D~rn~~~~~~~ 458 (478)
T 3g79_A 400 --------------------PGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANP-VIIDGRNVIEPDEF 458 (478)
T ss_dssp --------------------TTBCEESCHHHHHTTCSEEEECSCCHHHHSCCHHHHHHHHCCSSC-EEEESSSCSCHHHH
T ss_pred --------------------cCcceecCHHHHHhcCCEEEEecCCHHHHhhhHHHHHHHhccCCC-EEEECCCCCCHHHH
Confidence 12457789999999999999999999999999999999998 56 99999999999999
Q ss_pred hhcCcEEEEecCCC
Q 011641 456 REIGFIVYSIGKPL 469 (480)
Q Consensus 456 ~~~g~~y~~iG~~~ 469 (480)
++.||.|+||||..
T Consensus 459 ~~~g~~y~~ig~~~ 472 (478)
T 3g79_A 459 IGKGFVYKGIGREG 472 (478)
T ss_dssp HTTTCEEEETTCTT
T ss_pred HhcCCEEEEecccC
Confidence 99999999999964
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-88 Score=696.40 Aligned_cols=410 Identities=27% Similarity=0.427 Sum_probs=364.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
.|..|||+||||++||.+|+++ ||+|++||+++++++.|++++.|++||++++++++ +..+++++|+|+ ++||
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~----~~aD 85 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP----EASD 85 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSC----CCCS
T ss_pred CccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCch----hhCC
Confidence 4789999999999999999998 99999999999999999999999999999999875 446889999983 5899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHH-HHhcCC--CCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI-LTHNSK--GIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~-l~~~~~--g~~~~v~~~Pe 157 (480)
+||+|||||.+.+. +..+|+++++++.++|.++++++++||++||++|||++++.+. +++.+. +.+|.++++||
T Consensus 86 vvii~VpTp~~~~~---~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 86 VFIIAVPTPNNDDQ---YRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp EEEECCCCCBCSSS---SCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred EEEEEeCCCccccc---cCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 99999999986531 1389999999999999999999999999999999999998665 443332 56799999999
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|+.||.+.+++.+|++||+|++ +++.++++++|+.+++ ..++.+++++||++|+++|+|++++|+|+||++.+|
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~-----~~~~~~~~~ly~~~~~-~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVT-----KACIEAGKRVYRTFVQ-GEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHTTTCC-SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCC-----HHHHHHHHHHHHHHhC-CcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987764 7899999999999874 467778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++|+++++++||+ ++++||+||||||||||+++|++.|++.| +++++++++|+.||+++++++.+.
T Consensus 237 e~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~-----~li~~~~~iN~~~~~~v~~~~~~~ 309 (431)
T 3ojo_A 237 NNLNINVLDVIEMANKHPRV--NIHQPGPGVGGHCLAVDPYFIIAKDPENA-----KLIQTGREINNSMPAYVVDTTKQI 309 (431)
T ss_dssp HHTTCCHHHHHHHHTTSTTC--CCCCCCSCCCCCCBCSCC---------CC-----HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHccCCCc--ccCCCCCCccccchhhhHHHHHHHHHHHh-----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999987 68899999999999999999999999876 799999999999999999999988
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhC-CCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD-KARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~-g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+ +.++++||+|||+||||||||+||||++.|++.|.++ |++|.+|||++..+ +
T Consensus 310 l-~~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-----~-------------------- 363 (431)
T 3ojo_A 310 I-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-----F-------------------- 363 (431)
T ss_dssp H-HHSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-----T--------------------
T ss_pred h-hhcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-----c--------------------
Confidence 7 4678999999999999999999999999999999999 99999999999753 1
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPL 469 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~ 469 (480)
++.++++++++||+|||+|+|++|+++||+.+ +.|+.| +|||+||++++ +..||.|+||||-.
T Consensus 364 -----~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~-~~~~~~-~i~D~r~~~~~---~~~~~~y~~ig~~~ 426 (431)
T 3ojo_A 364 -----VEHDMSHAVKDASLVLILSDHSEFKNLSDSHF-DKMKHK-VIFDTKNVVKS---SFEDVLYYNYGNIF 426 (431)
T ss_dssp -----BCSTTHHHHTTCSEEEECSCCGGGTSCCGGGG-TTCSSC-EEEESSCCCCS---CCSSSEEEETTTGG
T ss_pred -----ccCCHHHHHhCCCEEEEecCCHHHhccCHHHH-HhCCCC-EEEECCCCCCc---hhcCeEEEeeCchh
Confidence 24578999999999999999999999999998 788876 99999999975 46899999999864
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-85 Score=694.65 Aligned_cols=460 Identities=58% Similarity=0.999 Sum_probs=404.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||+++|.+|+++++|++|++||+++++++.++++..+++++++++++.....+++++++++++++++||
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD 88 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD 88 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence 47999999999999999999997556999999999999999999999999999988776433457899999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh-cC--CCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH-NS--KGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~-~~--~g~~~~v~~~Pe 157 (480)
+||+|||||.+.++.+.+..+|++++++++++|.++++++++||++||++||+++.+.+.+++ .+ .+.+|+++++||
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe 168 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPE 168 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEECCC
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeCcc
Confidence 999999999754322223468999999999999999999999999999999999999888877 43 146788999999
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
+..+|.+.+++.+++++++|+.++.+++++.+.++++|+.++...++..++++++|++|+++|++++++++++||++.+|
T Consensus 169 ~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la 248 (481)
T 2o3j_A 169 FLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248 (481)
T ss_dssp CCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999875433346889999999998632467888999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++|+++++++||++.+++.||+||||+|+|||++++++.|++.|+++..+++++++++|++||+++++++.+.
T Consensus 249 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~~~~~~~~~~~~~~ 328 (481)
T 2o3j_A 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAE 328 (481)
T ss_dssp HHHSCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHccCCCCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHhhHHHHHHHHHHh
Confidence 99999999999999999999989999999999999999999999999999998667899999999999999999999999
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.++++||+|||+|||+||+|+|+||++.|++.|.++|++|.+|||+++.++...++.. .+..+ ...
T Consensus 329 l~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~--~~~~~---------~~~ 397 (481)
T 2o3j_A 329 LFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLAS--VTSAQ---------DVE 397 (481)
T ss_dssp TTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHH--HSCHH---------HHH
T ss_pred hccccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHh--hhccc---------ccc
Confidence 8777899999999999999999999999999999999999999999999987644332210 00000 000
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDP 471 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~ 471 (480)
+.+++++++++++++||+|||+|+|++|+++||+++.+.|+.+.+|||+||+++++++++.||.|+||||+.++
T Consensus 398 ~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~g~~~~~iG~~~~~ 471 (481)
T 2o3j_A 398 RLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQ 471 (481)
T ss_dssp HHEEEESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCSCHHHHHHHTCEEEETTSCSCC
T ss_pred CceeecCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCCCHHHHHhcCcEEEEecCcccc
Confidence 24678889999999999999999999999999999999999887899999999999999999999999997654
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-83 Score=674.07 Aligned_cols=451 Identities=36% Similarity=0.589 Sum_probs=400.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++++.+++++++++++.+ ...+++++++|+++++++||
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD 86 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD 86 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred ceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence 8999999999999999999998 99999999999999999999999999999877653 33467999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC-CC---CceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG---IKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g---~~~~v~~~P 156 (480)
+||+|||||.+.++ .+|++++++++++|.++++++++|+++||++||+++.+.+.+++.. .+ .+|.++++|
T Consensus 87 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~P 161 (478)
T 2y0c_A 87 VQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNP 161 (478)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred EEEEEeCCCcccCC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEECh
Confidence 99999999987654 8999999999999999999999999999999999999888876641 12 578999999
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC-CCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP-EDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~-~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
|++.||.+.+++.+++++++|+.++....++.+.++++|+.+.+ ..++..+++++||+.|+++|++++++++++||++.
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~ 241 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999875210001788999999998762 24678889999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHH
Q 011641 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV 315 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (480)
+|+++|+|+++++++++.++|++..++.||+|+||+|++||+.++.+.|++.|++ .++++++.++|+.|++++++++.
T Consensus 242 la~~~Gid~~~v~~~i~~~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~--~pl~~~v~~in~~~~~~~~~~~~ 319 (478)
T 2y0c_A 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQILKAVSSVNATQKRVLADKIV 319 (478)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhcCCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999888899999999999999999999999999999 79999999999999999999999
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+++.++++||+||||||||||||+||||++.|++.|.++|++|.+|||++.++ ....++. ..|..| .
T Consensus 320 ~~~~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~~~--~~~~~~--------~ 388 (478)
T 2y0c_A 320 ARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEE-ARRVIAL--DLADHP--------S 388 (478)
T ss_dssp HHHCSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHH-HHHHHHH--HTTTCH--------H
T ss_pred HHhcccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHH-HHHhhcc--cccccc--------c
Confidence 9987788999999999999999999999999999999999999999999998653 2222210 001111 1
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecCCCCccc
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWL 473 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
..+.+.+++++++++++||+|||+|+|++|+++||+.+.+.|+.+ +|||+||+++++.+++.||.|+||||+...|-
T Consensus 389 ~~~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~ig~~~~~~~ 465 (478)
T 2y0c_A 389 WLERLSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKTP-VIFDGRNLYEPETMSEQGIEYHPIGRPGSRQA 465 (478)
T ss_dssp HHTTEEECSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSSC-EEEESSCCSCHHHHHHTTCEEECSSSCCCHHH
T ss_pred cccceeecCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCCC-EEEECCCCCCHHHHHhcCCEEEEECcccchhH
Confidence 112478889999999999999999999999999999999999887 99999999999999999999999999877663
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-82 Score=668.52 Aligned_cols=459 Identities=64% Similarity=1.054 Sum_probs=402.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||+++|..|+++++|++|++||+++++++.++++..+++++++++++.+....++++++++++++++||
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 58999999999999999999987456999999999999999999999999999988775433346899999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC-CCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~ 159 (480)
+||+|||+|.+.++...+..+|++++.+++++|.+.++++++||++||+++|+++.+.+.+++.+. +.++.+.++||+.
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~ 164 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 164 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCC
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHh
Confidence 999999999764321011368999999999999999999999999999999999999888877543 5688999999999
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+|.+.+++.+++++++|+.++..++++.+.++++|+.+....+++.+++++||++|+++|++++++++++||++.+|++
T Consensus 165 ~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~ 244 (467)
T 2q3e_A 165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244 (467)
T ss_dssp CTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983221257889999999999832356788899999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhc
Q 011641 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (480)
Q Consensus 240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~ 319 (480)
+|+|++++++++++++++++.+++||+||||+|+|||++++++.|++.|++...+++++++++|++|++++++++.+.+.
T Consensus 245 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 324 (467)
T 2q3e_A 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLF 324 (467)
T ss_dssp HTCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCcCHHHHHHHHcCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999888999999999999999999999999999999877889999999999999999999999876
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+.++++||+||||||||||||+||||++.|++.|.++|++|.+|||++..++....+. ++-.+.| ....++
T Consensus 325 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~-------~~~~~~~--~~~~~~ 395 (467)
T 2q3e_A 325 NTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSED--DQVSRL 395 (467)
T ss_dssp TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHC-------C--------CHHHHH
T ss_pred cccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhc-------ccccccc--ccccCc
Confidence 6789999999999999999999999999999999999999999999998776544321 0000000 011235
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh--hhhhhcCcEEEEecCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGKP 468 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~--~~~~~~g~~y~~iG~~ 468 (480)
+++++++++++++||+|||+|+|++|+++||+++...|+.|.+|||+||++++ ++++..||.|+||||+
T Consensus 396 ~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~~~g~~~~~ig~~ 466 (467)
T 2q3e_A 396 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKK 466 (467)
T ss_dssp EEECSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTTTTCHHHHHHHTCEEEETTSC
T ss_pred eeecCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcCCchHHHHHhcCcEEEEeCCC
Confidence 78888999999999999999999999999999999999988669999999998 8899999999999984
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-77 Score=613.07 Aligned_cols=387 Identities=25% Similarity=0.377 Sum_probs=332.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||+++|..|++ |++|++||+++++++.++++..+++|+++++++.+. .+++++++|+++++++||
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~-~~~l~~ttd~~ea~~~aD 111 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ---NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK-PLNFRATTDKHDAYRNAD 111 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHTTCS
T ss_pred CCEEEEECcCHHHHHHHHHHHc---CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc-cCCeEEEcCHHHHHhCCC
Confidence 5899999999999999999985 799999999999999999999999999999887541 357999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||||.+.+ ...+|++++++++++|.+ ++++++||++||++|||++++.+.+.+. .++|+|||++
T Consensus 112 vViiaVPt~~~~~----~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~------~v~~sPe~~~ 180 (432)
T 3pid_A 112 YVIIATPTDYDPK----TNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID------NVIFSPEFLR 180 (432)
T ss_dssp EEEECCCCEEETT----TTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC------CEEECCCCCC
T ss_pred EEEEeCCCccccc----cccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc------cEeecCccCC
Confidence 9999999986542 236899999999999999 9999999999999999999998877542 4789999999
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhc--cCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH--WVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~--~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
||.+..++++|++||+|+. ++..+++.++|.. +....++..+++++||++|+++|+|++++|+|+||++.+|+
T Consensus 181 ~G~A~~~~l~p~rIvvG~~-----~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae 255 (432)
T 3pid_A 181 EGRALYDNLHPSRIVIGER-----SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAE 255 (432)
T ss_dssp TTSHHHHHHSCSCEEESSC-----SHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCceEEecCC-----HHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986 4567888888876 22223577889999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHh
Q 011641 239 ATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASM 318 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l 318 (480)
++|+|+++|+++++++||||..|++||+||||||||||+++|++. ..|++ .+++++++++|++||+++++++.+.
T Consensus 256 ~~GiD~~~v~~~~~~dprig~~~~~pg~G~GG~C~pkD~~~L~~~--~~~~~--~~li~~~~~~N~~~~~~v~~~i~~~- 330 (432)
T 3pid_A 256 SQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLAN--YESVP--NNIIAAIVDANRTRKDFIADSILAR- 330 (432)
T ss_dssp HTTCCHHHHHHHHHTSTTTCSSSCCCCSCCCTTTHHHHHHHHHHH--TTTSC--CSHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HcCCCHHHHHHHHccCCCCCcccCCCCCCCcccchhhhHHHHHHH--hcCCc--hhHHHHHHHHHHhhHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999754 45777 6899999999999999999999875
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
.+++|+||||||||||||+|+||++.|++.|+++|++|.+|||+++.+. +.
T Consensus 331 ----~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~-------------------------~~ 381 (432)
T 3pid_A 331 ----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDE-------------------------FF 381 (432)
T ss_dssp ----CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSE-------------------------ET
T ss_pred ----cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhh-------------------------cC
Confidence 3789999999999999999999999999999999999999999997431 12
Q ss_pred ceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~ 453 (480)
+..++.++++++++||+||+.+.|++|+++ .+. +++|++|..+
T Consensus 382 ~~~~~~~~~~~~~~aD~iv~~~~~~~~~~~-----~~~-------~~tr~~~~~~ 424 (432)
T 3pid_A 382 NSRVVRDLNAFKQEADVIISNRMAEELADV-----ADK-------VYTRDLFGND 424 (432)
T ss_dssp TEEECCCHHHHHHHCSEEECSSCCGGGGGG-----GGG-------EECCCSSTTC
T ss_pred CceEECCHHHHHhcCCEEEECCCChHHHHH-----hhc-------cCCCCCCCCc
Confidence 466789999999999999999999988763 221 4999999754
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-75 Score=611.13 Aligned_cols=423 Identities=26% Similarity=0.401 Sum_probs=370.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..+++++++++++.. ...+++++++++++++++||
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD 78 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence 7999999999999999999998 99999999999999999999999999999888754 22467999999998899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCC---CcEEEEecCCCcch-HHHHHHHHHhc-CC--CCceEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS---DKIVVEKSTVPVKT-AEAIEKILTHN-SK--GIKFQIL 153 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~---~~iVi~~STv~~gt-~~~l~~~l~~~-~~--g~~~~v~ 153 (480)
+||+|||+|.+.++ .+|++++++++++|.+.+++ +++|+.+||+++|+ .+.+.+.+++. +. +.++.+.
T Consensus 79 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~ 153 (436)
T 1mv8_A 79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG 153 (436)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred EEEEEcCCCcccCC-----CcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEE
Confidence 99999999986644 89999999999999999998 99999999999999 66688888764 22 3578899
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHH
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
++||+..+|.+..++.+++++++|+. ++++.+.++++|+.++. ++..++++++|+.|++.|++++++++++||+
T Consensus 154 ~~Pe~~~~G~~~~~~~~~~~iv~G~~----~~~~~~~~~~l~~~~~~--~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELDA--PIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSSS--CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcccccccccchhccCCCEEEEEcC----CHHHHHHHHHHHhccCC--CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998885 47888999999999863 5656899999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCCCCC--CCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHH
Q 011641 234 SALCEATGANVSQVAFAVGTDSRIG--PKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFV 311 (480)
Q Consensus 234 ~~l~~~~Gid~~~v~~~~~~~~~~~--~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~ 311 (480)
+.+|+++|+|++++.++++.++|++ ++++.||+||||+|++||+.++.+.|+++|++ .++++++.++|+.||++++
T Consensus 228 ~~l~~~~Gid~~~v~~~~~~~~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~--~pl~~~v~~in~~~~~~~~ 305 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQVQKAF 305 (436)
T ss_dssp HHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCC--CTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHhcCCCCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCC--cHHHHHHHHHHhHhHHHHH
Confidence 9999999999999999999999887 78889999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHH---HhhhccccCCCCCCC
Q 011641 312 NRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQ---RDLTMNKFDWDHPLH 388 (480)
Q Consensus 312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~---~~~~~~~~~~~~~~~ 388 (480)
+++.+. +++||+|||+|||+||+|+|+||++.|++.|.++|++|.+|||+++..... ..++. +++
T Consensus 306 ~~~~~~-----~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~------~~~- 373 (436)
T 1mv8_A 306 DLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIE------SKI- 373 (436)
T ss_dssp HHHTTS-----SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHH------HTS-
T ss_pred HHHHHh-----cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcc------ccc-
Confidence 998653 689999999999999999999999999999999999999999995432100 11110 000
Q ss_pred CCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecC
Q 011641 389 LQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 467 (480)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
..... .++.++++++++||+|||+|+|++|+++| .+.|+.+ +|||+||+++++. ||.|+||||
T Consensus 374 ------~~~~~-~~~~~~~~~~~~~d~~vi~~~~~~~~~~~----~~~~~~~-~i~D~r~~~~~~~----g~~~~~ig~ 436 (436)
T 1mv8_A 374 ------PHVSS-LLVSDLDEVVASSDVLVLGNGDELFVDLV----NKTPSGK-KLVDLVGFMPHTT----TAQAEGICW 436 (436)
T ss_dssp ------HHHHT-TBCSCHHHHHHHCSEEEECSCCGGGHHHH----HSCCTTC-EEEESSSCCSSSC----CSSEEESCC
T ss_pred ------ccccc-cccCCHHHHHhCCcEEEEeCCcHHHHhhh----HHhcCCC-EEEECCCCCCccc----CcEEEEecC
Confidence 00001 35678999999999999999999999887 3467766 8999999999764 999999996
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-70 Score=562.08 Aligned_cols=396 Identities=22% Similarity=0.335 Sum_probs=342.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||+++|..|++ ||+|++||+++++++.++++..+++++++++++.. ..+++++++++++++++||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~---G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~~~~l~~t~~~~~~~~~aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL---QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-ccCcEEEeCCHHHHhcCCCE
Confidence 799999999999999999996 69999999999999999999999999998887754 24568899998888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||+|.+.+ +..+|+++++++++++.+ ++++++||.+||+++|+++.+.+.+.+ + .++++||+..|
T Consensus 77 viiavpt~~~~~----~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~-----~-~v~~~Pe~~~~ 145 (402)
T 1dlj_A 77 VIIATPTNYNSR----INYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT-----D-RIIFSPEFLRE 145 (402)
T ss_dssp EEECCCCCEETT----TTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC-----S-CEEECCCCCCT
T ss_pred EEEecCCCcccC----CCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC-----C-eEEECCccccC
Confidence 999999985321 237899999999999999 999999999999999999988776543 2 57899999999
Q ss_pred cccccccCCCCeEEEecCCCc--chHHHHHHHHHHHhc-cCCCC-eEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 162 GTAIQDLFNPDRVLIGGRETP--EGQKAVKALKDVYAH-WVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~--~~~~~~e~~~~l~~~-~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|.+..++.+++++++|+.+.. ...+..+.+.++|.. ..+.. +++.+++++|||.|+++|++++++++++||++.+|
T Consensus 146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 225 (402)
T 1dlj_A 146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA 225 (402)
T ss_dssp TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988899999999986310 011556778888864 43212 47778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVAS 317 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++++++++++||++..|+.||+||||||||||++++++.|+ |++ .+++++++++|++||+++++++.+.
T Consensus 226 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~--~~l~~~~~~~N~~~~~~~~~~~~~~ 301 (402)
T 1dlj_A 226 ESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIP--QTLIEAIVSSNNVRKSYIAKQIINV 301 (402)
T ss_dssp HHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSS--CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHhccCCCCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCC--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999889999999999999999999999885 776 6899999999999999999999998
Q ss_pred hcC-cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc
Q 011641 318 MFN-TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM 396 (480)
Q Consensus 318 l~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+++ .++++||+||||||||||+|+|+||++.|++.|+++|++|.+|||+++... ..
T Consensus 302 ~~~~~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~--~~--------------------- 358 (402)
T 1dlj_A 302 LKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SE--------------------- 358 (402)
T ss_dssp HTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TT---------------------
T ss_pred hhhcCCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH--HH---------------------
Confidence 864 678999999999999999999999999999999999999999999976421 10
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
.+..++.++++++++||++|+.|+|++|+++. + -+.+|.+|..
T Consensus 359 -~~~~~~~~~~~~~~~~d~~v~~~~h~~~~~~~-----~-------~~~~~~~~~~ 401 (402)
T 1dlj_A 359 -DQSVLVNDLENFKKQANIIVTNRYDNELQDVK-----N-------KVYSRDIFGR 401 (402)
T ss_dssp -CCSEECCCHHHHHHHCSEEECSSCCGGGGGGG-----G-------GEECCCCSSC
T ss_pred -cCCeecCCHHHHHhCCcEEEEecCChHHHHHh-----h-------ccccccccCC
Confidence 12466788999999999999999999998742 1 1458888753
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.74 Aligned_cols=248 Identities=17% Similarity=0.206 Sum_probs=202.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||.++|.+|+++ ||+|++||+++++++.+++. +++++++++++++ ||+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIEAMTPLAEA-------------------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTTTSHHHHHT-------------------TCEECSSHHHHTT-SSE
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCEEcCCHHHHHh-CCE
Confidence 5899999999999999999998 99999999999988887752 3577889999888 999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||++ ..++++++++.+.++++++||++||++|++++.+.+.+.+.+ ..++.+|....+
T Consensus 74 vi~~vp~~--------------~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~g~~ 135 (296)
T 3qha_A 74 IHITVLDD--------------AQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARD----IHIVDAPVSGGA 135 (296)
T ss_dssp EEECCSSH--------------HHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGT----CEEEECCEESCH
T ss_pred EEEECCCh--------------HHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcC----CEEEeCCCcCCH
Confidence 99999964 245777899999999999999999999999999988887653 234567766554
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhC
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~G 241 (480)
..+..+. ..+++|++ +++.++++++|+.++. .+++.++++.++++|+++|.+.+.++++++|+..+|+++|
T Consensus 136 ~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G 206 (296)
T 3qha_A 136 AAAARGE---LATMVGAD-----REVYERIKPAFKHWAA-VVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG 206 (296)
T ss_dssp HHHHHTC---EEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCC---ccEEecCC-----HHHHHHHHHHHHHHcC-CeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4332221 24678875 7899999999999863 4566678999999999999999999999999999999999
Q ss_pred CCHHHH------HHHhcCCCCC-----CCCCcc-CCCCccc-----cchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 242 ANVSQV------AFAVGTDSRI-----GPKFLN-ASVGFGG-----SCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 242 id~~~v------~~~~~~~~~~-----~~~~~~-pg~g~gG-----~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+|++++ .++++..+.- +++++. .++||++ .|++||+.++.+.|++.|++ .++++.+.
T Consensus 207 ~d~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~--~p~~~~~~ 280 (296)
T 3qha_A 207 LDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVD--LPLARLAY 280 (296)
T ss_dssp CCHHHHHHHHHHHHHHHCCGGGGCCCSSCSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred CCHHHHhhhcchHHHHhcCcccCHHhhchhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999 9988753210 223332 3678888 99999999999999999998 56666554
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=265.36 Aligned_cols=250 Identities=17% Similarity=0.157 Sum_probs=207.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||.+|.++ ||+|++|||++++++.+.+. +.+..+++.++++.||
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~a~s~~e~~~~~d 61 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD 61 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTTCS
T ss_pred cCEEEEeeehHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCC
Confidence 78999999999999999999998 99999999999999988752 3577889999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---HHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++ ..+++++. .+.+.++++++||++||+.|.+++++.+.+++.+ ..++.+|.
T Consensus 62 vv~~~l~~~--------------~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G----~~~lDaPV 123 (300)
T 3obb_A 62 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV 123 (300)
T ss_dssp EEEECCSCH--------------HHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCE
T ss_pred ceeecCCch--------------HHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEecCC
Confidence 999999864 34556654 3667888999999999999999999999888764 35678998
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+.+ .+++||+ ++++++++++|+.+++ ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 124 sGg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la 194 (300)
T 3obb_A 124 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMGR-NIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALG 194 (300)
T ss_dssp ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCE---EEEEeCC-----HHHHHHHHHHHHHhCC-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766655433 4788996 8899999999999974 456778999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC--------------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGP--------------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~--------------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|++.+.++++..+..++ ... .+.++|....+.||+.+..+.|++.|++ .++.+.+.
T Consensus 195 ~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~a~ 271 (300)
T 3obb_A 195 VANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASS--TPMGSLAL 271 (300)
T ss_dssp HHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 9999999999999986532111 001 2456788889999999999999999998 56555544
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=266.64 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=205.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|+||.++|..|+++ |++|++||+++++++.+.+. +++.++++++++++||
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~e~~~~aD 89 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTPARAASLAAL-------------------GATIHEQARAAARDAD 89 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCEEESSHHHHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHC-------------------CCEeeCCHHHHHhcCC
Confidence 47999999999999999999998 99999999999999988753 3577889999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH--HHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~--~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||++. .++.++. ++.+.++++++||+.||++|++++.+.+.+.+.+ ..++.+|..
T Consensus 90 vVi~~vp~~~--------------~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~ 151 (320)
T 4dll_A 90 IVVSMLENGA--------------VVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALG----IAHLDTPVS 151 (320)
T ss_dssp EEEECCSSHH--------------HHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred EEEEECCCHH--------------HHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcC----CEEEeCCCc
Confidence 9999998642 3466666 7788899999999999999999999888877653 244567876
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+..+ ...+++|++ +++.++++++|+.+ . .+++.++.+.++++|+++|.+.+.++++++|+..+|+
T Consensus 152 g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~-~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~ 221 (320)
T 4dll_A 152 GGTVGAEQG---TLVIMAGGK-----PADFERSLPLLKVF-G-RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFAT 221 (320)
T ss_dssp CHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHH-E-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHhcC---CeeEEeCCC-----HHHHHHHHHHHHhc-C-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655333322 124778875 78999999999998 4 5667778999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCC-------CCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+.|+|++++.++++.++..+ +.++ .+++||++.|++||+.++.+.+++.|++ .++.+.+.
T Consensus 222 ~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 290 (320)
T 4dll_A 222 KGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNALATAQEIGFD--APITGLFE 290 (320)
T ss_dssp HTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999998765211 1222 2467899999999999999999999998 56666544
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=265.94 Aligned_cols=251 Identities=12% Similarity=0.110 Sum_probs=205.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. +++.++++++++++||
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~~~~~~aD 79 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTLSKCDELVEH-------------------GASVCESPAEVIKKCK 79 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeEcCCHHHHHHhCC
Confidence 68999999999999999999998 99999999999998887752 3567789999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++. .+++++ +++.+.++++++||++||++|++++.+.+.+++.+ ..++.+|.
T Consensus 80 vvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g----~~~v~~pv 141 (310)
T 3doj_A 80 YTIAMLSDPC--------------AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKG----GRFVEGPV 141 (310)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred EEEEEcCCHH--------------HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEeCCC
Confidence 9999998652 346666 77888899999999999999999999888887653 23456787
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+ ...+++|++ +++.++++++|+.++. .+++.++++.++++|+++|.+.+.++++++|+..+|
T Consensus 142 ~g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 212 (310)
T 3doj_A 142 SGSKKPAEDG---QLIILAAGD-----KALFEESIPAFDVLGK-RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLA 212 (310)
T ss_dssp ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHhcC---CeEEEEcCC-----HHHHHHHHHHHHHhCC-CEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555443322 224677875 7899999999999863 455666899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++.++..++ .++ .+.+||++.|+.||+.++.+.|++.|++ .++.+.+.+
T Consensus 213 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 283 (310)
T 3doj_A 213 DKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVS--MPVAAAANE 283 (310)
T ss_dssp HHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999999987642211 122 3467899999999999999999999998 566665443
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=262.56 Aligned_cols=248 Identities=16% Similarity=0.171 Sum_probs=197.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||||||+|+||.+||.+|+++ ||+|++||+++++++.+.+. +.+.++++.++++.||+|
T Consensus 7 kIgfIGLG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 7 KIAFLGLGNLGTPIAEILLEA--GYELVVWNRTASKAEPLTKL-------------------GATVVENAIDAITPGGIV 65 (297)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEC-------CTTTTT-------------------TCEECSSGGGGCCTTCEE
T ss_pred cEEEEecHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHc-------------------CCeEeCCHHHHHhcCCce
Confidence 899999999999999999998 99999999999988766542 356778899999999999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHH-HHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESA-ARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~-~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
|+|||++. .++++ ...+.+.+++++++|++||+.|.+++++.+.+.+.+ +.++.+|....+
T Consensus 66 i~~l~~~~--------------~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g----~~~ldapVsGg~ 127 (297)
T 4gbj_A 66 FSVLADDA--------------AVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYG----AHYVGAPIFARP 127 (297)
T ss_dssp EECCSSHH--------------HHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEECCH
T ss_pred eeeccchh--------------hHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcC----CceecCCcCCCc
Confidence 99999652 22333 255778889999999999999999999998888764 456799998877
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
..+..+.. .+++|++ ++++++++++|+.++. ..++.+ +++.++.+|+++|.+.+.+++.++|...+|+++
T Consensus 128 ~~a~~g~l---~im~gG~-----~~~~~~~~~~l~~~g~-~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~ 198 (297)
T 4gbj_A 128 EAVRAKVG---NICLSGN-----AGAKERIKPIVENFVK-GVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKN 198 (297)
T ss_dssp HHHHHTCC---EEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccc---eeecccc-----hhHHHHHHHHHHHhhC-CeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66654433 4788886 7899999999999973 345566 579999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCC-------Cc--cCC-CCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 241 GANVSQVAFAVGTDSRIGPK-------FL--NAS-VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~~~~~-------~~--~pg-~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|+|+++++++++..+.-++. ++ .+. .||....+.||+.+.++.|++.|++ .++.+.+.
T Consensus 199 Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~~~ 266 (297)
T 4gbj_A 199 GISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASDVNAP--MPFADIIR 266 (297)
T ss_dssp TCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred CCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 99999999999876532221 11 222 4788899999999999999999998 56666544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=255.20 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=205.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. +++.++++++++++||
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD 59 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSPEKAEELAAL-------------------GAERAATPCEVVESCP 59 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 48999999999999999999998 99999999999998887753 3577889999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++ ..+++++ +++.+.++++++|+++||++|.+++.+.+.+++.+ ..++.+|.
T Consensus 60 vvi~~vp~~--------------~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g----~~~~~~pv 121 (287)
T 3pef_A 60 VTFAMLADP--------------AAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKG----GRFLEAPV 121 (287)
T ss_dssp EEEECCSSH--------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred EEEEEcCCH--------------HHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhC----CEEEECCC
Confidence 999999864 2356777 78888999999999999999999999888877653 23455787
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+ ...+++|++ +++.++++++|+.++. .+++.++.+.++++|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~ 192 (287)
T 3pef_A 122 SGSKKPAEDG---TLIILAAGD-----RNLYDEAMPGFEKMGK-KIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALG 192 (287)
T ss_dssp ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcC---CEEEEEeCC-----HHHHHHHHHHHHHhCC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655443222 124677875 7899999999999863 455667899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCC-------CCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++.++-.+ ..++ .+.+||++.|+.||+.++.+.|++.|++ .++.+.+.+
T Consensus 193 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~ 263 (287)
T 3pef_A 193 EKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQP--LVASAAANE 263 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 999999999999998754211 1122 2467899999999999999999999998 566665543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=255.79 Aligned_cols=251 Identities=17% Similarity=0.144 Sum_probs=203.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. +++.++++++++++||
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~ad 59 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNPAKCAPLVAL-------------------GARQASSPAEVCAACD 59 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH--TCCEEEECSSGGGGHHHHHH-------------------TCEECSCHHHHHHHCS
T ss_pred CCeEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHHcCC
Confidence 78999999999999999999998 99999999999988887652 3567789999899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++ ..+++++ +++.+.++++++|++.||+.|++++.+.+.+++.+ ..++.+|.
T Consensus 60 vvi~~v~~~--------------~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g----~~~~~~pv 121 (287)
T 3pdu_A 60 ITIAMLADP--------------AAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARG----GRFLEAPV 121 (287)
T ss_dssp EEEECCSSH--------------HHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred EEEEEcCCH--------------HHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEECCc
Confidence 999999864 2356666 77788889999999999999999999888877653 23456676
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+. ..+++|++ ++..++++++|+.++. .+++.++++.+++.|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (287)
T 3pdu_A 122 SGTKKPAEDGT---LIILAAGD-----QSLFTDAGPAFAALGK-KCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALG 192 (287)
T ss_dssp ECCHHHHHHTC---EEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCC---EEEEEeCC-----HHHHHHHHHHHHHhCC-CEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543332221 14677875 7899999999999863 345667899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCC-------CCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++.++..+ ..++ .+.+||++.|+.||..++.+.|++.|++ .++.+.+.+
T Consensus 193 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~ 263 (287)
T 3pdu_A 193 RNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQP--LHGAATANE 263 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 999999999999998754211 1122 2467899999999999999999999998 566665543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=253.96 Aligned_cols=251 Identities=14% Similarity=0.102 Sum_probs=200.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||.++|..|+++ |++|++||+++++++.+.+. +...+++++++++++||+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~~e~~~~aDv 67 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE------------------GACGAAASAREFAGVVDA 67 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------TCSEEESSSTTTTTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc------------------CCccccCCHHHHHhcCCE
Confidence 7899999999999999999998 99999999999999988753 112236778888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .++.++ +++.+.++++++||+.||++|++++.+.+.+.+.+ ..++.+|..
T Consensus 68 vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~ 129 (303)
T 3g0o_A 68 LVILVVNAA--------------QVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALN----LNMLDAPVS 129 (303)
T ss_dssp EEECCSSHH--------------HHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcC----CeEEeCCCC
Confidence 999998642 345555 67788899999999999999999999888777643 234457766
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+..+..+ ...+++|++ +++.++++++|+.++. ..++.++ ++.+++.|+++|.+.++++++++|+..+|
T Consensus 130 g~~~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 200 (303)
T 3g0o_A 130 GGAVKAAQG---EMTVMASGS-----EAAFTRLKPVLDAVAS-NVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALA 200 (303)
T ss_dssp SCHHHHHTT---CEEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhcC---CeEEEeCCC-----HHHHHHHHHHHHHHCC-CEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433222 124677764 7899999999999863 3455666 89999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++.....++ .++ .+.+||+..|+.||+.++++.|++.|++ .++.+.+.+
T Consensus 201 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~--~p~~~~~~~ 271 (303)
T 3g0o_A 201 ARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP--LPLASTALN 271 (303)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999999987532111 122 2457899999999999999999999998 566665543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=242.72 Aligned_cols=242 Identities=12% Similarity=0.082 Sum_probs=181.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCH-------HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec-C
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV-------SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-D 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~-------~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d 71 (480)
+|||+|||+|+||.++|..|+++ | ++|++||+++ +..+.+.+. + + ++ +
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~~~~~~------------------g-~--~~~s 80 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRFNDPAASGALRARAAEL------------------G-V--EPLD 80 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGGGCTTTHHHHHHHHHHT------------------T-C--EEES
T ss_pred CCeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCCccccchHHHHHHHHHC------------------C-C--CCCC
Confidence 47999999999999999999998 9 9999999997 344443321 2 3 44 6
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceE
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
+++++++||+||+|||++. ..+.++++.+.++++++||++||++|++++.+.+.+++.+ ..
T Consensus 81 ~~e~~~~aDvVi~avp~~~---------------~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g--~~-- 141 (317)
T 4ezb_A 81 DVAGIACADVVLSLVVGAA---------------TKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGK--GS-- 141 (317)
T ss_dssp SGGGGGGCSEEEECCCGGG---------------HHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSS--CE--
T ss_pred HHHHHhcCCEEEEecCCHH---------------HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--Ce--
Confidence 7788899999999999653 1334588899999999999999999999999988887653 22
Q ss_pred EeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHHHHHHH
Q 011641 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 152 v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++.+|....+. +..+ ...+++|+. ++ ++++++|+.++. ..++.++ ++.|+++|+++|++.+++++++
T Consensus 142 ~~d~pv~g~~~-a~~g---~l~i~vgg~-----~~--~~~~~ll~~~g~-~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~ 209 (317)
T 4ezb_A 142 FVEGAVMARVP-PYAE---KVPILVAGR-----RA--VEVAERLNALGM-NLEAVGETPGQASSLKMIRSVMIKGVEALL 209 (317)
T ss_dssp EEEEEECSCST-TTGG---GSEEEEEST-----TH--HHHHHHHHTTTC-EEEEEESSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCCch-hhcC---CEEEEEeCC-----hH--HHHHHHHHHhCC-CeEEeCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 23444433221 1111 124788886 22 789999999863 4455665 8999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCC-CCC-----CCCcc--CCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHH
Q 011641 231 NAMSALCEATGANVSQVAFAVGTDS-RIG-----PKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~~~~-~~~-----~~~~~--pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (480)
+|+..+|+++|+|+ ++++.+..+. ... ..++. +++||+ ++||+..+.+.|++.|++ .++++.+.++
T Consensus 210 ~E~~~la~~~Gid~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~ 283 (317)
T 4ezb_A 210 IEALSSAERAGVTE-RILDSVQETFPGLDWRDVADYYLSRTFEHGAR---RVTEMTEAAETIESFGLN--APMSRAACET 283 (317)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHhcCccccHHHhhhhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 99999999999999 5777766432 211 11221 234444 699999999999999998 6666665543
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=237.84 Aligned_cols=248 Identities=11% Similarity=0.062 Sum_probs=188.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC--HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS--VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~--~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|+||.++|..|+++ |+ +|++||++ +++.+.+.+. +++.+++++++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~-------------------g~~~~~~~~e~~~ 82 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAASAESWRPRAEEL-------------------GVSCKASVAEVAG 82 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSSCHHHHHHHHHHT-------------------TCEECSCHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCCCCHHHHHHHHHC-------------------CCEEeCCHHHHHh
Confidence 58999999999999999999998 99 99999997 5777766542 3567788888899
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|||++. ..++++++.+.++++++||+.||+.|++++.+.+.+.+...|. .++.+|.
T Consensus 83 ~aDvVi~~vp~~~---------------~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~--~~vd~pv 145 (312)
T 3qsg_A 83 ECDVIFSLVTAQA---------------ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSA--QYAAVAV 145 (312)
T ss_dssp HCSEEEECSCTTT---------------HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTC--EEEEEEE
T ss_pred cCCEEEEecCchh---------------HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCC--eEEeccc
Confidence 9999999999753 1346688999999999999999999999999888776652122 2344555
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
...+..+ .+ ...+++|+. ++ ++++++|+.++. ..++.++ ++.|+++|+++|.+.+.++++++|++.+
T Consensus 146 ~g~~~~~-~g---~l~i~vgg~-----~~--~~~~~ll~~~g~-~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 213 (312)
T 3qsg_A 146 MSAVKPH-GH---RVPLVVDGD-----GA--RRFQAAFTLYGC-RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAA 213 (312)
T ss_dssp CSCSTTT-GG---GSEEEEEST-----TH--HHHHHHHHTTTC-EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhh-cC---CEEEEecCC-----hH--HHHHHHHHHhCC-CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222 11 225778886 22 889999999863 3445555 8999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCC--C----CCCCCcc--CCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHhH
Q 011641 237 CEATGANVSQVAFAVGTDS--R----IGPKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIND 304 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~~~--~----~~~~~~~--pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (480)
|+++|+|+ ++++.++.+. + ++..++. +++||. +.||+..+++.+++.|++ .++++.+.+.-+
T Consensus 214 a~~~Gld~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~~~ 283 (312)
T 3qsg_A 214 AEKMGLAD-RVLASLDASFPEHHLRDLALYLVERNLEHADR---RAHELGEVAATLCSVGVE--PLVAEAGYRRLT 283 (312)
T ss_dssp HHTTTCHH-HHHHHHHHHSGGGTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHcCCCH-HHHHHHHhcCCchhHHHhhhHhhcCCCCcccc---hHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Confidence 99999999 7888887543 1 0111222 234443 489999999999999998 677776665443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=225.25 Aligned_cols=246 Identities=11% Similarity=0.073 Sum_probs=186.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+. +++.++++++++++||
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~aD 67 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQ--GKRVAIWNRSPGKAAALVAA-------------------GAHLCESVKAALSASP 67 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHH-------------------TCEECSSHHHHHHHSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 37899999999999999999998 99999999999999887641 2466788899899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH--HHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~--~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||++. .+++++. .+.. +.++++||++||+.|.+++.+.+.+.+.+ . .++.+|..
T Consensus 68 vVi~~vp~~~--------------~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g--~--~~vdapv~ 128 (306)
T 3l6d_A 68 ATIFVLLDNH--------------ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAG--G--HYVKGMIV 128 (306)
T ss_dssp EEEECCSSHH--------------HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTT--C--EEEEEEEE
T ss_pred EEEEEeCCHH--------------HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcC--C--eEEecccc
Confidence 9999998642 2455554 5544 46799999999999999999888777653 2 33455655
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe--CC-chhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT--TN-LWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~--~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+..+-.. ...+++|++ ++++++++++|+.++. ..++. ++ ++.++++| .+.+.++++++|...
T Consensus 129 g~~~~~~~~---~~~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~ 195 (306)
T 3l6d_A 129 AYPRNVGHR---ESHSIHTGD-----REAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVG 195 (306)
T ss_dssp SCGGGTTCT---TCEEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cCcccccCC---ceEEEEcCC-----HHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHH
Confidence 433211111 124778885 7899999999999853 34555 43 78899999 455678999999999
Q ss_pred HHHHhCCCHHHHHHHhcCCC--CC-------CCCCc--cCCC-CccccchhHhHHHHHHHHHHCCCChhhHHHHHHHH
Q 011641 236 LCEATGANVSQVAFAVGTDS--RI-------GPKFL--NASV-GFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (480)
Q Consensus 236 l~~~~Gid~~~v~~~~~~~~--~~-------~~~~~--~pg~-g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+|+++|+|++++.++++... .. ++.++ .+.+ +|...|+.||+.++++.+++.|++ .++.+.+.+
T Consensus 196 la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 271 (306)
T 3l6d_A 196 AGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVW--TPVFDAVCQ 271 (306)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCC--chHHHHHHH
Confidence 99999999999999987642 11 11122 1233 368899999999999999999998 566666554
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=222.16 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=194.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA-- 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a-- 79 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++++.+.+. ++..+++++++++.+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~a~~ 81 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-------------------GIAGARSIEEFCAKLVK 81 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCBCCSSHHHHHHHSCS
T ss_pred CEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCEEeCCHHHHHhcCCC
Confidence 7999999999999999999998 99999999999999988763 244567888888888
Q ss_pred -cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 80 -DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 80 -DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||++ .++++++++.+.++++++||+.||+.|.+++++.+.+.+.+ +.++.+|..
T Consensus 82 ~DvVi~~vp~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~vdapVs 142 (358)
T 4e21_A 82 PRVVWLMVPAA---------------VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQG----ITYVDVGTS 142 (358)
T ss_dssp SCEEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTT----CEEEEEEEE
T ss_pred CCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCC----CEEEeCCCC
Confidence 9999999854 25778899999999999999999999999998887776653 233456665
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC-------------------CCeEEeCCchhHHHhhhhH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP-------------------EDRILTTNLWSAELSKLAA 219 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~-------------------~~~v~~~~~~~ae~~Kl~~ 219 (480)
..+..+..+ + .+++|++ ++++++++++|+.++. ...+++++.++++++|+++
T Consensus 143 Gg~~~a~~G---~-~im~GG~-----~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~ 213 (358)
T 4e21_A 143 GGIFGLERG---Y-CLMIGGE-----KQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVH 213 (358)
T ss_dssp CGGGHHHHC---C-EEEEESC-----HHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHH
T ss_pred CCHHHHhcC---C-eeeecCC-----HHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHH
Confidence 554333332 2 5888986 7899999999999872 1356677899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHh------------------------CCCHHHHHHHhcCCCCCCCCCc---------cCCC
Q 011641 220 NAFLAQRISSVNAMSALCEAT------------------------GANVSQVAFAVGTDSRIGPKFL---------NASV 266 (480)
Q Consensus 220 N~~~~~~ia~~nE~~~l~~~~------------------------Gid~~~v~~~~~~~~~~~~~~~---------~pg~ 266 (480)
|.+.+.++++++|...++++. |+|..++.+.++.++.+++.++ .|+.
T Consensus 214 n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~p~~ 293 (358)
T 4e21_A 214 NGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPDL 293 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhCCCh
Confidence 999999999999999999998 8999999999998764433222 2433
Q ss_pred -CccccchhHhH---HHHHHHHHHCCCChhhHHHHHHH
Q 011641 267 -GFGGSCFQKDI---LNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 267 -g~gG~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|.+. .||. +..+..|.+.|+| .+++.+++
T Consensus 294 ~~~~~~--~~d~g~~r~~~~~A~~~gvp--~p~~~~al 327 (358)
T 4e21_A 294 QEFQGR--VSDSGEGRWTVAAAIDEGVP--AHVLSSAL 327 (358)
T ss_dssp TTC--C--CCCCSHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHcCCC--hHHHHHHH
Confidence 13322 3444 5678889999999 66666554
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=215.99 Aligned_cols=249 Identities=18% Similarity=0.226 Sum_probs=194.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|++||+++++++.+.+. +++.+++++++++++|+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D~ 64 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV 64 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred ceEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCCE
Confidence 6999999999999999999998 89999999999998887752 24567788888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|+|++. .++.++ +++.+.++++++|++.|+..+.+.+.+.+.+.+.+ +.++.+|..
T Consensus 65 vi~~v~~~~--------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~pv~ 126 (299)
T 1vpd_A 65 IITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG----VEMLDAPVS 126 (299)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEecCC
Confidence 999998642 345566 67778889999999999998888888888776642 234456765
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+... ...+++|+. ++..+.++++|+.++. ..++.++.+.+.+.|+++|.+.++.+++++|+..+++
T Consensus 127 ~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~ 197 (299)
T 1vpd_A 127 GGEPKAIDG---TLSVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLAT 197 (299)
T ss_dssp SHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHhcC---CEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322221 124666763 7789999999999862 3455568899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+.|+|.+++.+++.....- .+.++ ...+|+...++.||...+.+.+++.|++ .++.+.+.
T Consensus 198 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~ 266 (299)
T 1vpd_A 198 KAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQ--LPLTAAVM 266 (299)
T ss_dssp HTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 9999999999998765311 11112 1246788899999999999999999998 56555544
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-25 Score=216.60 Aligned_cols=252 Identities=18% Similarity=0.156 Sum_probs=193.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||..+|..|++. |++|++|| ++++++.+.+. ++..+++++++++++|
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~-~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA--GHQLHVTT-IGPVADELLSL-------------------GAVNVETARQVTEFAD 60 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT--TCEEEECC-SSCCCHHHHTT-------------------TCBCCSSHHHHHHTCS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--CCEEEEEc-CHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 68999999999999999999998 99999999 98888777652 1334567888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---HHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|++. .++.++. ++.+.++++++|+..|+..+++.+.+.+.+.+.+ +.++.+|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~p~ 122 (295)
T 1yb4_A 61 IIFIMVPDTP--------------QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMG----ADYLDAPV 122 (295)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCE
T ss_pred EEEEECCCHH--------------HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEccC
Confidence 9999998642 2455565 6777788899999999988888888887776532 34456776
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+ ...+++|+. ++..+.++++|+.++. ..++.++.+.+.+.|++.|.+..+.+++++|+..++
T Consensus 123 ~~~~~~a~~g---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~ 193 (295)
T 1yb4_A 123 SGGEIGAREG---TLSIMVGGE-----QKVFDRVKPLFDILGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFA 193 (295)
T ss_dssp ESHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHcC---CeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544322221 113567763 7788999999999862 345566889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHHh
Q 011641 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (480)
++.|+|.+++.+.+.....-.+ .++ ...+|+...++.||+.++++.+++.|++ .++.+.+.+..
T Consensus 194 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~ 266 (295)
T 1yb4_A 194 SKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLNLALQSAKALALN--LPNTATCQELF 266 (295)
T ss_dssp HHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 9999999999999986541111 111 2346788899999999999999999998 56666655443
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=210.80 Aligned_cols=249 Identities=15% Similarity=0.159 Sum_probs=188.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ |++|++||+++++++.+.+. +++.+++++++++++|+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv 59 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH--GYPLIIYDVFPDACKEFQDA-------------------GEQVVSSPADVAEKADR 59 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT--TCCEEEECSSTHHHHHHHTT-------------------TCEECSSHHHHHHHCSE
T ss_pred CeEEEEeccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 7999999999999999999998 89999999999999888752 25667788888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHH---HHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARV---IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||.+. .++.++.+ +.+.++++++|+..|++++.+.+.+.+.+.+.+ . .+..+|..
T Consensus 60 vi~~vp~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g--~--~~~~~p~~ 121 (296)
T 2gf2_A 60 IITMLPTSI--------------NAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMG--A--VFMDAPVS 121 (296)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEECCEE
T ss_pred EEEeCCCHH--------------HHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--EEEEcCCC
Confidence 999998642 23555554 345678899999889999988888777776532 2 23456765
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+... ...+++|+. ++..+.++++|+.++. ..+.....+.+.+.|+++|.+.++.+++++|+..+++
T Consensus 122 ~g~~~a~~~---~~~~~~~~~-----~~~~~~v~~l~~~~g~-~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~ 192 (296)
T 2gf2_A 122 GGVGAARSG---NLTFMVGGV-----EDEFAAAQELLGCMGS-NVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGI 192 (296)
T ss_dssp SHHHHHHHT---CEEEEEESC-----GGGHHHHHHHHTTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhcC---cEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443211111 113566754 6678899999998863 3445566788999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCC---------CCCc-------cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRIG---------PKFL-------NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~---------~~~~-------~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+.|+|.+++.+++......+ +..+ ...+||...++.||..++.+.+++.|++ .++.+.+.
T Consensus 193 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~ 268 (296)
T 2gf2_A 193 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSP--ILLGSLAH 268 (296)
T ss_dssp HTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999887632100 1111 1235788999999999999999999998 56555444
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=206.45 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=193.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||..+|..|++. |++|++||+++++.+.+.+. ++..+++++++++++|
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D 62 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKE--GVTVYAFDLMEANVAAVVAQ-------------------GAQACENNQKVAAASD 62 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHTT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCC
Confidence 37999999999999999999998 89999999999999887752 2456678888888999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---HHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|.+. .++.++. ++.+.++++++|+..|+..+++.+.+.+.+.+.+ +.++.+|.
T Consensus 63 ~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g----~~~~~~p~ 124 (301)
T 3cky_A 63 IIFTSLPNAG--------------IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKG----IDYVDAPV 124 (301)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred EEEEECCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEccC
Confidence 9999998642 3455664 7778889999999988888888888887776642 23346776
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+ ...+++|+. ++..+.++++|+.++. ..++.++.+.+.+.|++.|.+..+.+++++|+..++
T Consensus 125 ~~~~~~a~~g---~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~ 195 (301)
T 3cky_A 125 SGGTKGAEAG---TLTIMVGAS-----EAVFEKIQPVLSVIGK-DIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLG 195 (301)
T ss_dssp ESHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHcC---CeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443211111 113566763 7788999999999862 344566789999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCC-------CCC-CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSR-------IGP-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~-------~~~-~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|.+++.+.+..... ..+ .++ ...+|+...++.||...+.+.+++.|++ .++.+.+.+
T Consensus 196 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~ 267 (301)
T 3cky_A 196 VKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVP--LPMTAMATQ 267 (301)
T ss_dssp HHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence 9999999999998875421 112 232 2345778899999999999999999998 566555443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-24 Score=213.98 Aligned_cols=280 Identities=14% Similarity=0.131 Sum_probs=200.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|+||+++|..|+++ |++|++||+++++++.+++ +.++.+.|+.. ...++++++|++++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~------l~~~i~~t~d~~ea~~~a 100 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYP------FPETLKAYCDLKASLEGV 100 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCC------CCTTEEEESCHHHHHTTC
T ss_pred CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCc------cCCCeEEECCHHHHHhcC
Confidence 37999999999999999999998 9999999999999999986 44555555542 134689999999889999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||+ ..++++++++.+.++++++|+..++ +.+++ +.+.+.+++..++..+.+.++|++
T Consensus 101 DvVilaVp~---------------~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~~~~~vlsgP~~ 164 (356)
T 3k96_A 101 TDILIVVPS---------------FAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQVPMAVISGPSL 164 (356)
T ss_dssp CEEEECCCH---------------HHHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCSCCEEEEESSCC
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCCCCEEEEECccH
Confidence 999999985 2478899999999999998877654 67777 656666655432235678899998
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHh-----------------hhhHhH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS-----------------KLAANA 221 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~-----------------Kl~~N~ 221 (480)
..+... ..|..+++++. +++..+.++++|+..+ ...+...|+..+||. |+..|+
T Consensus 165 a~ev~~----g~pt~~via~~----~~~~~~~v~~lf~~~~-~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~ 235 (356)
T 3k96_A 165 ATEVAA----NLPTAVSLASN----NSQFSKDLIERLHGQR-FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNA 235 (356)
T ss_dssp HHHHHT----TCCEEEEEEES----CHHHHHHHHHHHCCSS-EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHc----CCCeEEEEecC----CHHHHHHHHHHhCCCC-eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchH
Confidence 776432 34556777876 4788999999999754 234556788888875 677788
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCCCc---cCCCCccc----------cchhHhHHHHH
Q 011641 222 FLAQRISSVNAMSALCEATGANVSQVAFAVGTD-------SRIGPKFL---NASVGFGG----------SCFQKDILNLV 281 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-------~~~~~~~~---~pg~g~gG----------~cl~kD~~~l~ 281 (480)
..++.+.+++|+.++|+++|+|++++.+..+.. +..+.++- .-|-|..- --=.++...+.
T Consensus 236 ~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~ 315 (356)
T 3k96_A 236 RAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVH 315 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHH
Confidence 889999999999999999999999887554321 00111110 00001000 01134567777
Q ss_pred HHHHHCCCChhhHHHHHHHHH--hHHhHHHHHHHHH
Q 011641 282 YICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVV 315 (480)
Q Consensus 282 ~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (480)
.+++++|++ .++.+++-++ ++.-|+..++.++
T Consensus 316 ~la~~~~v~--~Pi~~~v~~il~~~~~~~~~~~~l~ 349 (356)
T 3k96_A 316 ALAQKHAIE--MPLTFQVHRILHEDLDPQQAVQELL 349 (356)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788888887 5666665543 3344555555443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=219.88 Aligned_cols=207 Identities=12% Similarity=0.152 Sum_probs=167.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc---
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
||+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.+.. ..++..+++++++++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK--------------GTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT--------------TSSCEECSSHHHHHHTBC
T ss_pred CCEEEEEChhHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcccC--------------CCceeccCCHHHHHhhcc
Confidence 58999999999999999999998 99999999999999998763210 124566788888766
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||++ ..++++++++.+.++++++||+.||+.+.++.++.+.+.+.+ +.++.+|.
T Consensus 68 ~aDvVil~Vp~~--------------~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~G----i~fvd~pV 129 (484)
T 4gwg_A 68 KPRRIILLVKAG--------------QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG----ILFVGSGV 129 (484)
T ss_dssp SSCEEEECSCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEE
T ss_pred CCCEEEEecCCh--------------HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhc----cccccCCc
Confidence 599999999964 245778899999999999999999999988888877776653 23345666
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCe-------EEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR-------ILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
...+..+..+ +.+++|++ +++.++++++|+.++. .. ++.++.++++.+|+++|.+.+.+++++
T Consensus 130 sGg~~gA~~G----~~im~GG~-----~ea~~~v~pll~~ig~-~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~i 199 (484)
T 4gwg_A 130 SGGEEGARYG----PSLMPGGN-----KEAWPHIKTIFQGIAA-KVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLI 199 (484)
T ss_dssp ESHHHHHHHC----CEEEEEEC-----GGGHHHHHHHHHHHSC-BCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcC----CeeecCCC-----HHHHHHHHHHHHHhcC-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence 5544333222 26788986 6789999999998864 22 456678999999999999999999999
Q ss_pred HHHHHHHHH-hCCCHHHHHHHh
Q 011641 231 NAMSALCEA-TGANVSQVAFAV 251 (480)
Q Consensus 231 nE~~~l~~~-~Gid~~~v~~~~ 251 (480)
+|+..++++ +|+|+.++.+++
T Consensus 200 aEa~~l~~~~~Gld~~~l~~v~ 221 (484)
T 4gwg_A 200 CEAYHLMKDVLGMAQDEMAQAF 221 (484)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999 999999988876
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-23 Score=204.41 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=188.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|++. |++|++||+++++++.+.+. ++..+++++++++++|+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv 89 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM--GHTVTVWNRTAEKCDLFIQE-------------------GARLGRTPAEVVSTCDI 89 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSGGGGHHHHHT-------------------TCEECSCHHHHHHHCSE
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCCE
Confidence 7899999999999999999998 89999999999988877642 23556778888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHH---HhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVI---ADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i---~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .++.++..+ .+.++++++|++.|++.+.+.+.+.+.+.+.+ ..++.+|..
T Consensus 90 Vi~av~~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~----~~~v~~p~~ 151 (316)
T 2uyy_A 90 TFACVSDPK--------------AAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRG----GRFLEAPVS 151 (316)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred EEEeCCCHH--------------HHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEEcCcc
Confidence 999998642 345555543 36788899999999988888888877775532 233455654
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+.. ....+++|++ ++..+.++++|+.++. ..++..+++.+.+.|++.|.+....+++++|+..+++
T Consensus 152 g~~~~~~~---g~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~ 222 (316)
T 2uyy_A 152 GNQQLSND---GMLVILAAGD-----RGLYEDCSSCFQAMGK-TSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQ 222 (316)
T ss_dssp SCHHHHHH---TCEEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhh---CCEEEEeCCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221111 1113556764 6788999999999862 3344457899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+.|++.+++.++++....-.+ .++ ...+|+...++.||..++++.+++.|++ .++.+.+.
T Consensus 223 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~ 291 (316)
T 2uyy_A 223 VTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHP--TPMAAAAN 291 (316)
T ss_dssp HTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 999999999998876531111 111 2456788899999999999999999998 56555444
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=202.98 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=188.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||..+|..|++ |++|++||+++++.+.+.+. ++..++ ++++++++|
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~-~~~~~~~~D 57 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE-------------------FGSEAV-PLERVAEAR 57 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH-------------------HCCEEC-CGGGGGGCS
T ss_pred CCeEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC-------------------CCcccC-HHHHHhCCC
Confidence 7899999999999999999986 68999999999998887642 112233 566788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|++. .++.+++++.+.++++++|++.|+..+.+.+.+.+.+.+.+ ..++.+|....
T Consensus 58 ~vi~~v~~~~--------------~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~p~~~~ 119 (289)
T 2cvz_A 58 VIFTCLPTTR--------------EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG----VTYLDAPVSGG 119 (289)
T ss_dssp EEEECCSSHH--------------HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCEESH
T ss_pred EEEEeCCChH--------------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEEecCCCC
Confidence 9999998642 24667788888899999999999988888888887776532 33445675433
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+..+.. ....+++|+. ++..+.++++| .++. ..++..+.+.+.+.|++.|.+..+.+++++|+..++++.
T Consensus 120 ~~~~~~---g~~~~~~~~~-----~~~~~~~~~ll-~~g~-~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 189 (289)
T 2cvz_A 120 TSGAEA---GTLTVMLGGP-----EEAVERVRPFL-AYAK-KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ 189 (289)
T ss_dssp HHHHHH---TCEEEEEESC-----HHHHHHHGGGC-TTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhh---CCeEEEECCC-----HHHHHHHHHHH-hhcC-CeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 321111 1223556653 77889999999 8752 345667888999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCC-------CCC-CCc--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHHHH
Q 011641 241 GANVSQVAFAVGTDSR-------IGP-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (480)
Q Consensus 241 Gid~~~v~~~~~~~~~-------~~~-~~~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (480)
|+|.+++.+.+..... .++ .++ ...+|+...++.||...+.+.+++.|++ .++.+.+.+.
T Consensus 190 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~~~ 259 (289)
T 2cvz_A 190 GVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAP--SPLLRLAREV 259 (289)
T ss_dssp TCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCC--CHHHHHHHHH
T ss_pred CcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 9999999999876431 111 122 2345778899999999999999999998 5666654443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-22 Score=207.47 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=186.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
.+|+|||+|.||.+||.+|+++ |++|++||+++++++.++++..+ + .+++.+++++++++.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----~----------~gi~~~~s~~e~v~~l~~ 74 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH--GFTVCAYNRTQSKVDHFLANEAK----G----------KSIIGATSIEDFISKLKR 74 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSHHHHHHHHTTTT----T----------SSEECCSSHHHHHHTSCS
T ss_pred CCEEEEeeHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHccccc----C----------CCeEEeCCHHHHHhcCCC
Confidence 4799999999999999999998 99999999999999998863211 0 146778889887776
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..++++++++.+.++++++||+.||..+.+++++.+.+++.+ .. ++.+|..
T Consensus 75 aDvVil~Vp~~--------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g--~~--~v~~pVs 136 (497)
T 2p4q_A 75 PRKVMLLVKAG--------------APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKG--IL--FVGSGVS 136 (497)
T ss_dssp SCEEEECCCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CE--EEEEEEE
T ss_pred CCEEEEEcCCh--------------HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcC--Cc--eeCCCcc
Confidence 99999999964 246788899999999999999999999888888877776643 22 2344544
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..|..+.. .+.+++|+. +++.+.++++|+.++. . +.+.+..+.+.++|+++|.+.+..+++++|
T Consensus 137 gg~~~a~~----G~~im~gg~-----~e~~~~v~~ll~~~g~-~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laE 206 (497)
T 2p4q_A 137 GGEEGARY----GPSLMPGGS-----EEAWPHIKNIFQSISA-KSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICE 206 (497)
T ss_dssp SHHHHHHH----CCEEEEEEC-----GGGHHHHHHHHHHHSC-EETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHhhc----CCeEEecCC-----HHHHHHHHHHHHHhcC-ccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432222 124778875 6788999999999863 2 244556789999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc---CCCCCCC-------CCc--cCCCCccccchh-----HhHH-HHHHHHHHCCCChhh
Q 011641 233 MSALCEA-TGANVSQVAFAVG---TDSRIGP-------KFL--NASVGFGGSCFQ-----KDIL-NLVYICECNGLPEVA 293 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~~~---~~~~~~~-------~~~--~pg~g~gG~cl~-----kD~~-~l~~~a~~~g~~~~~ 293 (480)
+..++++ +|+|++++.+++. ...--++ .+. .+..++-...+. ||+. .....|++.|++ .
T Consensus 207 a~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~--~ 284 (497)
T 2p4q_A 207 AYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMP--V 284 (497)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCC--C
T ss_pred HHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCC--C
Confidence 9999999 6999999998883 2211000 001 111124444444 7765 567889999998 4
Q ss_pred HHHHH
Q 011641 294 EYWKQ 298 (480)
Q Consensus 294 ~~~~~ 298 (480)
+++..
T Consensus 285 P~~~~ 289 (497)
T 2p4q_A 285 TLIGE 289 (497)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 55554
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=189.62 Aligned_cols=275 Identities=14% Similarity=0.115 Sum_probs=190.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC--CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec--CHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~ 77 (480)
|||+|||+|.||.++|..|+++ |++|++||+ ++++++.+++....+.. +.. . .++.+++ +++++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~-g~~------~-~~~~~~~~~~~~~~~~ 70 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRL-GVK------L-NGVEIFWPEQLEKCLE 70 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTT-TBC------C-CSEEEECGGGHHHHHT
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHhCcCccc-Ccc------c-cceEEecHHhHHHHHh
Confidence 7999999999999999999998 999999999 99999999875432211 110 0 2456777 8878789
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec-CC---CcchHHHHHHHHHhcCCC-CceEE
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TV---PVKTAEAIEKILTHNSKG-IKFQI 152 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv---~~gt~~~l~~~l~~~~~g-~~~~v 152 (480)
++|+||+|||++ .+.++++++.+ ++++++|+..+ ++ ++++.+.+.+.+.+..++ ..+.+
T Consensus 71 ~~D~vi~~v~~~---------------~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 134 (335)
T 1txg_A 71 NAEVVLLGVSTD---------------GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVA 134 (335)
T ss_dssp TCSEEEECSCGG---------------GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEE
T ss_pred cCCEEEEcCChH---------------HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEE
Confidence 999999999853 24678888999 98899888776 66 778878888877653211 23455
Q ss_pred eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHh-----------------
Q 011641 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS----------------- 215 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~----------------- 215 (480)
..+|.+...+.. ..+..+++|+. +++..+.++++|+..+. ......|+..++|.
T Consensus 135 ~~~p~~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~ 205 (335)
T 1txg_A 135 ITGPAIAREVAK----RMPTTVVFSSP----SESSANKMKEIFETEYF-GVEVTTDIIGTEITSALKNVYSIAIAWIRGY 205 (335)
T ss_dssp EESSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHc----cCCcEEEEEeC----CHHHHHHHHHHhCCCcE-EEEecCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667765433211 12234667765 46788999999998652 34556788888886
Q ss_pred hhh-----HhHHHHHHHHHHHHHHHHHHHhCCCHHHHH------HHhcCCCCCCCCC-c--cCCCCcccc----------
Q 011641 216 KLA-----ANAFLAQRISSVNAMSALCEATGANVSQVA------FAVGTDSRIGPKF-L--NASVGFGGS---------- 271 (480)
Q Consensus 216 Kl~-----~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~------~~~~~~~~~~~~~-~--~pg~g~gG~---------- 271 (480)
|+. +|.++++..+.++|+..+++++|+|+.++. +.+.+... +.++ + ..+.|+...
T Consensus 206 ~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~d~~~~~~~~ 284 (335)
T 1txg_A 206 ESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGMLGELLGKGLSIDEAMEELERRG 284 (335)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccHHHHHHHhCCCCHHHHHHHhccCC
Confidence 555 677788899999999999999999987654 33332210 0011 0 112233211
Q ss_pred -ch---hHhHHHHHHHHHHCCCChhhHHHHHHHHHhHH--hHHHHHHHH
Q 011641 272 -CF---QKDILNLVYICECNGLPEVAEYWKQVIKINDY--QKSRFVNRV 314 (480)
Q Consensus 272 -cl---~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~ 314 (480)
+. .||..++.+.+++.|++ .++.+.+.++... .|+..++.+
T Consensus 285 ~~~~E~~~~~~~~~~~a~~~gv~--~P~~~~~~~~~~~~~~~~~~~~~l 331 (335)
T 1txg_A 285 VGVVEGYKTAEKAYRLSSKINAD--TKLLDSIYRVLYEGLKVEEVLFEL 331 (335)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ceecchHHHHHHHHHHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHH
Confidence 33 39999999999999998 6777777665543 344444443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=195.76 Aligned_cols=254 Identities=16% Similarity=0.113 Sum_probs=183.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEEecCHHHhhc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
|||+|||+|.||.++|..|+++ |++|++||+++++++.+++. ... +. ..++..+++++++++
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~g~~---~~---------~~~i~~~~~~~e~v~~l~ 67 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASA---PF---------AGNLKAFETMEAFAASLK 67 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTS---TT---------GGGEEECSCHHHHHHHBC
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcCCC---CC---------CCCeEEECCHHHHHhccc
Confidence 7999999999999999999998 99999999999999988752 111 10 013677889888776
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||++ ..++++++++.+.++++++||+.|+..+..++++.+.+++.+ .. ++.+|.
T Consensus 68 ~aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g--~~--~v~~pv 129 (478)
T 1pgj_A 68 KPRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG--LR--FLGMGI 129 (478)
T ss_dssp SSCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTT--CE--EEEEEE
T ss_pred CCCEEEEecCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCC--Ce--EEEeec
Confidence 499999999864 235778889999999999999988887777777777776532 22 223444
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
...+..+.. .+.+++|+. ++..+.++++|+.++... ..+.++.+.+.++|+++|.+.+..+++++
T Consensus 130 ~gg~~~a~~----g~~i~~gg~-----~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~ 200 (478)
T 1pgj_A 130 SGGEEGARK----GPAFFPGGT-----LSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWG 200 (478)
T ss_dssp ESHHHHHHH----CCEEEEEEC-----HHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhc----CCeEeccCC-----HHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHH
Confidence 332221111 124677874 778999999999886320 34556778899999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHhc----CCCC------CCCCCc-cCC-CC-ccccchh-----HhH-HHHHHHHHHCCCChh
Q 011641 232 AMSALCEATGANVSQVAFAVG----TDSR------IGPKFL-NAS-VG-FGGSCFQ-----KDI-LNLVYICECNGLPEV 292 (480)
Q Consensus 232 E~~~l~~~~Gid~~~v~~~~~----~~~~------~~~~~~-~pg-~g-~gG~cl~-----kD~-~~l~~~a~~~g~~~~ 292 (480)
|+..+++++|++.+++.+++. .... +....+ .-. .| +-...+. ||+ ..+...|+++|++
T Consensus 201 Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~-- 278 (478)
T 1pgj_A 201 EVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP-- 278 (478)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCC--
Confidence 999999999999999988885 2211 000111 111 12 2222222 444 5888999999999
Q ss_pred hHHHHH
Q 011641 293 AEYWKQ 298 (480)
Q Consensus 293 ~~~~~~ 298 (480)
.+++++
T Consensus 279 ~Pi~~~ 284 (478)
T 1pgj_A 279 APSLNM 284 (478)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 666665
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=198.81 Aligned_cols=249 Identities=12% Similarity=0.111 Sum_probs=181.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc---c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS---E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~---~ 78 (480)
|||+|||+|.||.++|.+|+++ |++|++||+++++++.++++..+ + .++..+++++++++ +
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----g----------~gi~~~~~~~e~v~~l~~ 66 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK----G----------TKVLGAHSLEEMVSKLKK 66 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT----T----------SSCEECSSHHHHHHHBCS
T ss_pred CeEEEEChHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcccc----C----------CCeEEeCCHHHHHhhccC
Confidence 7899999999999999999998 99999999999999998863211 1 13677888888764 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..++++++++.+.++++++||+.|+..+..++++.+.+++.+ . .++.+|..
T Consensus 67 aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g--~--~~v~~pv~ 128 (482)
T 2pgd_A 67 PRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG--I--LFVGSGVS 128 (482)
T ss_dssp SCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEEEEEE
T ss_pred CCEEEEeCCCh--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--eEeCCCCC
Confidence 99999999964 245778889999999999999988888777777777776542 2 23345554
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCe-------EEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR-------ILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
..+..+. .++.+++|+. ++..+.++++|+.++. .. .+.+..+.+.++|+++|.+.+..+++++
T Consensus 129 g~~~~a~----~g~~i~~gg~-----~e~~~~v~~ll~~~g~-~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~ 198 (482)
T 2pgd_A 129 GGEDGAR----YGPSLMPGGN-----KEAWPHIKAIFQGIAA-KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLIC 198 (482)
T ss_dssp SHHHHHH----HCCEEEEEEC-----TTTHHHHHHHHHHHSC-BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhc----cCCeEEeCCC-----HHHHHHHHHHHHHhhh-hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 2225677875 5678899999998763 22 3445678899999999999999999999
Q ss_pred HHHHHHHHh-CCCHHHHHHHhc---CCCCCCCC-------Ccc---CCCCccccch------hHhHHHHHHHHHHCCCCh
Q 011641 232 AMSALCEAT-GANVSQVAFAVG---TDSRIGPK-------FLN---ASVGFGGSCF------QKDILNLVYICECNGLPE 291 (480)
Q Consensus 232 E~~~l~~~~-Gid~~~v~~~~~---~~~~~~~~-------~~~---pg~g~gG~cl------~kD~~~l~~~a~~~g~~~ 291 (480)
|+..++++. |++.+++.+++. ... .++. .+. ++.++-..-+ .+|...+...|+++|++
T Consensus 199 Ea~~l~~~~~G~~~~~~~~~~~~w~~g~-~~S~l~~~~~~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~- 276 (482)
T 2pgd_A 199 EAYHLMKDVLGLGHKEMAKAFEEWNKTE-LDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVP- 276 (482)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHhcCCC-cCchHHHHHhHHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCC-
Confidence 999999999 999999998884 221 1110 011 1112221212 24456788899999998
Q ss_pred hhHHHH
Q 011641 292 VAEYWK 297 (480)
Q Consensus 292 ~~~~~~ 297 (480)
.+++.
T Consensus 277 -~P~i~ 281 (482)
T 2pgd_A 277 -VTLIG 281 (482)
T ss_dssp -CHHHH
T ss_pred -cchHH
Confidence 55553
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-21 Score=199.13 Aligned_cols=206 Identities=12% Similarity=0.148 Sum_probs=165.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|+|+|||+|.||.+||.+|+++ |++|++||+++++++.+++... + .+++.+++++++++.
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~~r~~~~~~~l~~~~~-----~----------~gi~~~~s~~e~v~~l~~ 78 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR--GYTVSIFNRSREKTEEVIAENP-----G----------KKLVPYYTVKEFVESLET 78 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHST-----T----------SCEEECSSHHHHHHTBCS
T ss_pred CeEEEEccHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhCC-----C----------CCeEEeCCHHHHHhCCCC
Confidence 6799999999999999999998 9999999999999998875210 0 147788899888776
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++. .++++++++.+.++++++||+.|+..+.+++++.+.+++.+ . .++.+|..
T Consensus 79 aDvVil~Vp~~~--------------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g--~--~~v~~pv~ 140 (480)
T 2zyd_A 79 PRRILLMVKAGA--------------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEG--F--NFIGTGVS 140 (480)
T ss_dssp SCEEEECSCSSS--------------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEEEEEE
T ss_pred CCEEEEECCCHH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCC--C--CeeCCccc
Confidence 999999999642 35778899999999999999999998888888877776643 2 22345654
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED------RILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..|..+.. .+ .+++|+. ++..+.++++|+.++... +.+.+..+.+.++|++.|.+.+..+..++|
T Consensus 141 gg~~~a~~---g~-~i~~gg~-----~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laE 211 (480)
T 2zyd_A 141 GGEEGALK---GP-SIMPGGQ-----KEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAE 211 (480)
T ss_dssp SHHHHHHH---CC-EEEEESC-----HHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHhHHhc---CC-eEEecCC-----HHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433322 12 4778875 788999999999986420 345567899999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHh
Q 011641 233 MSALCEA-TGANVSQVAFAV 251 (480)
Q Consensus 233 ~~~l~~~-~Gid~~~v~~~~ 251 (480)
+..++++ +|+|++++.+++
T Consensus 212 a~~l~~~~lGl~~~~~~~l~ 231 (480)
T 2zyd_A 212 AYSLLKGGLNLTNEELAQTF 231 (480)
T ss_dssp HHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHH
Confidence 9999999 799999999887
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=198.94 Aligned_cols=279 Identities=18% Similarity=0.170 Sum_probs=189.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||+|.||.++|..|+++ ||+|++||+++++++.+++.. ...+.++.. ...+++++++++++++++|+
T Consensus 17 kI~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~aDv 88 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGAEI 88 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTCSS
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccccccc------cccceeeeCCHHHHHcCCCE
Confidence 999999999999999999998 999999999999999987632 222323321 11357888899888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHH----HHhhCCC-CcEEEEec-CCCcchHHHHHHHHHhcCCCCceEEeeC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARV----IADVSKS-DKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----i~~~l~~-~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
||+|||+ ..+.+++++ +.+.+++ +++|+..+ ++.+++.+.+.+.+.+..++..+.+..+
T Consensus 89 Vilav~~---------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~g 153 (366)
T 1evy_A 89 ILFVIPT---------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAG 153 (366)
T ss_dssp EEECCCH---------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEES
T ss_pred EEECCCh---------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeC
Confidence 9999984 245778888 8888887 88887776 6777766666666665422223556677
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc--CCCCeEEeCCchhHHHhhhh---------------
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW--VPEDRILTTNLWSAELSKLA--------------- 218 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~--~~~~~v~~~~~~~ae~~Kl~--------------- 218 (480)
|.+..+... ..+..+++++. +++..+.++++|+.. +. ..+...++...+|.|++
T Consensus 154 p~~~~~~~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~g~-~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~ 224 (366)
T 1evy_A 154 PSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTGDRSF-VCWATTDTVGCEVASAVKNVLAIGSGVANGLG 224 (366)
T ss_dssp SCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCTTSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHh----CCceEEEEecC----CHHHHHHHHHHhcCCCCeE-EEEEcCCchHHHHHHHHHhHHHHHHHHHhhcc
Confidence 766542111 12223455654 467889999999987 42 33455677777776654
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc--------CCC--C---CCCCCccCCCCcc------ccc--hhH
Q 011641 219 --ANAFLAQRISSVNAMSALCEATGANVSQVAFAVG--------TDS--R---IGPKFLNASVGFG------GSC--FQK 275 (480)
Q Consensus 219 --~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~--------~~~--~---~~~~~~~pg~g~g------G~c--l~k 275 (480)
+|.++++.+++++|+..+|++.|+|+.++.++.+ .++ + ++..+. -|..+. +.| ..|
T Consensus 225 ~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~e~~~ 303 (366)
T 1evy_A 225 MGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLG-KGLPIEEIQRTSKAVAEGVA 303 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHH-TTCCHHHHHC---CCCHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHh-CCCCHHHHHHHcCCeeehHH
Confidence 5667788999999999999999999865543211 011 0 010110 111111 223 359
Q ss_pred hHHHHHHHHHHCCCChhhHHHHHHHHHhHH--hHHHHHHHHHH
Q 011641 276 DILNLVYICECNGLPEVAEYWKQVIKINDY--QKSRFVNRVVA 316 (480)
Q Consensus 276 D~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~~~ 316 (480)
|..++.++++++|++ .++.+.+.++... .|+..++.+++
T Consensus 304 ~~~~v~~~a~~~gv~--~P~~~~v~~~~~~~~~~~~~~~~l~~ 344 (366)
T 1evy_A 304 TADPLMRLAKQLKVK--MPLCHQIYEIVYKKKNPRDALADLLS 344 (366)
T ss_dssp HHHHHHHHHHHHTCC--CHHHHHHHHHHHSCCCHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 999999999999998 6777777765543 56666666543
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=197.34 Aligned_cols=269 Identities=15% Similarity=0.147 Sum_probs=185.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC-------CeEEEEECCHH-----HHHHHHcC-CCCCcCCChHHHHhhhcCCCEE
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSD-QLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
||||+|||+|+||.++|..|+++ | ++|++||++++ +++.+++. ....+.++.. ...+++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~--G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~i~ 92 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN--AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVP------LPHNIV 92 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH--HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCB------CCTTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHc--CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCccc------CcCCeE
Confidence 57999999999999999999998 8 99999999998 88888763 2333333321 113578
Q ss_pred EecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh----hCCCCcEEEEec-CCCc--chHHHHHHH
Q 011641 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD----VSKSDKIVVEKS-TVPV--KTAEAIEKI 140 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~----~l~~~~iVi~~S-Tv~~--gt~~~l~~~ 140 (480)
+++|++++++++|+||+|||+ ..++++++++.+ .++++++|+..+ ++.+ ++.+.+.+.
T Consensus 93 ~~~~~~ea~~~aDvVilav~~---------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~ 157 (375)
T 1yj8_A 93 AHSDLASVINDADLLIFIVPC---------------QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNY 157 (375)
T ss_dssp EESSTHHHHTTCSEEEECCCH---------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHH
T ss_pred EECCHHHHHcCCCEEEEcCCH---------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHH
Confidence 889988888999999999984 246888899988 888899888776 4555 344455555
Q ss_pred HHhcCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhh--
Q 011641 141 LTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA-- 218 (480)
Q Consensus 141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~-- 218 (480)
+++.. +..+.+..+|.+..+... ..+..+++|+. +++..+.++++|+..+ ...+...|+..++|.|++
T Consensus 158 l~~~~-~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g-~~~~~~~di~~~~~~k~l~N 227 (375)
T 1yj8_A 158 ISDFL-NIPCSALSGANIAMDVAM----ENFSEATIGGN----DKDSLVIWQRVFDLPY-FKINCVNETIEVEICGALKN 227 (375)
T ss_dssp HHHHS-SSCEEEEECSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTT-EEEEEESCSHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEeCCchHHHHHh----CCCeEEEEecC----CHHHHHHHHHHhCCCC-eEEEEeCCcHHHHHHHHHHH
Confidence 55432 134556677766542111 12233555655 4678899999999864 234556788888887665
Q ss_pred ---------------HhHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHH------hc--CCCC---CCCCCccCC--CCc
Q 011641 219 ---------------ANAFLAQRISSVNAMSALCEAT--GANVSQVAFA------VG--TDSR---IGPKFLNAS--VGF 268 (480)
Q Consensus 219 ---------------~N~~~~~~ia~~nE~~~l~~~~--Gid~~~v~~~------~~--~~~~---~~~~~~~pg--~g~ 268 (480)
+|.+.++.+++++|+..+++++ |+|+.++.+. +. ...+ ++..+...| ..+
T Consensus 228 ~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~~~~~~~~g~~~~~ 307 (375)
T 1yj8_A 228 IITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTW 307 (375)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHHHHHHHHhcCCCCCH
Confidence 5557889999999999999999 6998666432 11 1111 111111102 111
Q ss_pred c--------ccch--hHhHHHHHHHHHHCCC--ChhhHHHHHHHHHhH
Q 011641 269 G--------GSCF--QKDILNLVYICECNGL--PEVAEYWKQVIKIND 304 (480)
Q Consensus 269 g--------G~cl--~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N~ 304 (480)
. |.+. .+|..++.+.++++|+ + .++.+.+.++..
T Consensus 308 ~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~~~--~P~~~~v~~~~~ 353 (375)
T 1yj8_A 308 EELENEILKGQKLQGTVTLKYVYHMIKEKNMTNE--FPLFTVLHKISF 353 (375)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCGGG--CHHHHHHHHHHH
T ss_pred HHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHh
Confidence 1 4554 8899999999999999 7 677777665543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-21 Score=184.39 Aligned_cols=231 Identities=13% Similarity=0.115 Sum_probs=164.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC--CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+++ |++|++||+ ++++++.+.+. +++ ++++++++++
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~--g~~V~~~~~~~~~~~~~~~~~~-------------------g~~--~~~~~~~~~a 57 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERARTV-------------------GVT--ETSEEDVYSC 57 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHHHH-------------------TCE--ECCHHHHHTS
T ss_pred CeEEEEechHHHHHHHHHHHHC--CCeEEEeCCccCHHHHHHHHHC-------------------CCc--CCHHHHHhcC
Confidence 7999999999999999999998 999999999 77877776541 123 5566778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++.. ++ .+.++.+.+++ +|++.||+.+.+.+.+.+.+.+. + +..+|...
T Consensus 58 Dvvi~~v~~~~~--------------~~-~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~--g----~~~~~v~~ 114 (264)
T 1i36_A 58 PVVISAVTPGVA--------------LG-AARRAGRHVRG--IYVDINNISPETVRMASSLIEKG--G----FVDAAIMG 114 (264)
T ss_dssp SEEEECSCGGGH--------------HH-HHHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSS--E----EEEEEECS
T ss_pred CEEEEECCCHHH--------------HH-HHHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhC--C----eeeeeeeC
Confidence 999999986421 12 23567777765 88888999888888877766542 1 12234322
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
.+..+..+ .. +++|+. +. +.+++ |+.++. ..+...+ ++.+++.|++.|.+....+++++|+..+++
T Consensus 115 ~~~~~~~g---~~-~~~~g~----~~---~~~~~-l~~~g~-~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~ 181 (264)
T 1i36_A 115 SVRRKGAD---IR-IIASGR----DA---EEFMK-LNRYGL-NIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAH 181 (264)
T ss_dssp CHHHHGGG---CE-EEEEST----TH---HHHHG-GGGGTC-EEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccC---Ce-EEecCC----cH---HHhhh-HHHcCC-eeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111 12 667775 22 67888 998863 2344454 899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCCCCCC-------c--cCCCCccccchhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 239 ATGANVSQVAFAVGTDSRIGPKF-------L--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~~~~~~~~-------~--~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++|+|.+ +++.+.... |..+ + ...+|+. +.||+..+.+.+++. ++ .++.+.+.
T Consensus 182 ~~G~~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~--~p~~~~v~ 243 (264)
T 1i36_A 182 RLGLEED-VLEMLEYTE--GNDFRESAISRLKSSCIHARR---RYEEMKEVQDMLAEV-ID--PVMPTCII 243 (264)
T ss_dssp HTTCHHH-HHHHHHTTS--CSSTHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHTT-SC--CSHHHHHH
T ss_pred HcCCcHH-HHHHHHHhc--CccHHHHHHHHhcCCCCcchh---hHHHHHHHHHHHHHh-cC--chHHHHHH
Confidence 9999986 778877542 2111 1 1223332 679999999999999 88 55555544
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-20 Score=193.75 Aligned_cols=250 Identities=11% Similarity=0.138 Sum_probs=181.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+... ..++..+++++++++.
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~---------------~~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR--GYTVAIYNRTTSKTEEVFKEHQ---------------DKNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTT---------------TSCEEECSSHHHHHHTBCS
T ss_pred CcEEEEeeHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHhCc---------------CCCeEEeCCHHHHHhhccC
Confidence 6899999999999999999998 9999999999999988875210 0146778898887776
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..++++++++.+.++++++||+.|+..+..++++.+.+++.+ . .++.+|..
T Consensus 69 aDvVilavp~~--------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g--~--~~v~~pv~ 130 (474)
T 2iz1_A 69 PRRIMLMVQAG--------------AATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSG--I--NFIGTGVS 130 (474)
T ss_dssp SCEEEECCCTT--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSS--C--EEEEEEEC
T ss_pred CCEEEEEccCc--------------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCC--C--eEECCCCC
Confidence 99999999864 235778889999999999999988887777777766665432 2 23345654
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC-------eEEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-------RILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~-------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
..+..+..+ + .++.|+. ++..+.++++|+.++... ..+.++.+.+.++|+++|.+.+..+.+++
T Consensus 131 gg~~~a~~g---~-~i~~gg~-----~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~la 201 (474)
T 2iz1_A 131 GGEKGALLG---P-SMMPGGQ-----KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIA 201 (474)
T ss_dssp SHHHHHHHC---C-CEEEEEC-----HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhccC---C-eEEecCC-----HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHH
Confidence 333222221 2 3677874 788999999999886420 24556788999999999999999999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc---CCCCCCC-------C-Cc--cCCCC-ccccchh-----HhHH-HHHHHHHHCCCC
Q 011641 232 AMSALCEA-TGANVSQVAFAVG---TDSRIGP-------K-FL--NASVG-FGGSCFQ-----KDIL-NLVYICECNGLP 290 (480)
Q Consensus 232 E~~~l~~~-~Gid~~~v~~~~~---~~~~~~~-------~-~~--~pg~g-~gG~cl~-----kD~~-~l~~~a~~~g~~ 290 (480)
|+..++++ +|++.+++.+++. ... .++ . +. ++.+| +-..-+. ||.. .....|++.|++
T Consensus 202 Ea~~l~~~~~Gl~~~~~~~l~~~w~~g~-~~s~l~~~~~~~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~ 280 (474)
T 2iz1_A 202 ESYDLLKRILGLSNAEIQAIFEEWNEGE-LDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVP 280 (474)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCC-ccccHHHhhhhHhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCC
Confidence 99999999 8999999988883 221 110 1 11 12222 2222222 6665 567889999998
Q ss_pred hhhHHHHH
Q 011641 291 EVAEYWKQ 298 (480)
Q Consensus 291 ~~~~~~~~ 298 (480)
.+++..
T Consensus 281 --~P~~~~ 286 (474)
T 2iz1_A 281 --LPLITE 286 (474)
T ss_dssp --CHHHHH
T ss_pred --CchHHH
Confidence 555554
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=190.98 Aligned_cols=267 Identities=16% Similarity=0.177 Sum_probs=180.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-------CeEEEEECCHH-----HHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|||+|||+|+||.++|..|+++ | ++|++||++++ +++.+++.+ ...+.++.. ...++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~--g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~ 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN--AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHK------LPPNVVA 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCC------CCTTEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCccc------CccCeEE
Confidence 7999999999999999999998 8 99999999998 888887532 222222211 0135788
Q ss_pred ecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CC--cchHHHHHHHHHhcC
Q 011641 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP--VKTAEAIEKILTHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~--~gt~~~l~~~l~~~~ 145 (480)
++++++++++||+||+|||+. .+.++++++.+.++++++|+..++ +. +++.+.+.+.+++..
T Consensus 81 ~~~~~~~~~~aD~Vilav~~~---------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~ 145 (354)
T 1x0v_A 81 VPDVVQAAEDADILIFVVPHQ---------------FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERL 145 (354)
T ss_dssp ESSHHHHHTTCSEEEECCCGG---------------GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHH
T ss_pred EcCHHHHHcCCCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHc
Confidence 889988889999999999842 257888999999998998887765 44 454444555554432
Q ss_pred CCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhh-------
Q 011641 146 KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA------- 218 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~------- 218 (480)
+..+.+..+|.+..+.. . ..+..+++++. +++..+.++++|+..+. ..+...|+..++|.|++
T Consensus 146 -~~~~~v~~gp~~a~~v~--~--g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~ 215 (354)
T 1x0v_A 146 -GIPMSVLMGANIASEVA--D--EKFCETTIGCK----DPAQGQLLKELMQTPNF-RITVVQEVDTVEICGALKNVVAVG 215 (354)
T ss_dssp -TCCEEEEECSCCHHHHH--T--TCCEEEEEECS----SHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCcHHHHH--h--cCCceEEEEEC----CHHHHHHHHHHhCCCCE-EEEEcCCchHhHHHHHHHHHHHHH
Confidence 12355667776543211 0 12234556655 46788999999998642 33455788888888776
Q ss_pred ----------HhHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHH------hcC--CCC---CCCCCccCCCCcc-----
Q 011641 219 ----------ANAFLAQRISSVNAMSALCEATGA---NVSQVAFA------VGT--DSR---IGPKFLNASVGFG----- 269 (480)
Q Consensus 219 ----------~N~~~~~~ia~~nE~~~l~~~~Gi---d~~~v~~~------~~~--~~~---~~~~~~~pg~g~g----- 269 (480)
+|.++++....++|+..++++.|+ ++.++.+. +.+ ..+ ++..+..+|..+.
T Consensus 216 ~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (354)
T 1x0v_A 216 AGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKE 295 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccHHHHHHHHhcCCCHHHHHHh
Confidence 666778999999999999999999 87665321 110 011 1111111111111
Q ss_pred ---ccch--hHhHHHHHHHHHHCCC--ChhhHHHHHHHHHh
Q 011641 270 ---GSCF--QKDILNLVYICECNGL--PEVAEYWKQVIKIN 303 (480)
Q Consensus 270 ---G~cl--~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N 303 (480)
|.+. .||..++.+.++++|+ + .++.+.+.++.
T Consensus 296 ~~~g~~~E~~~~~g~v~~~a~~~gv~~~--~P~~~~v~~~~ 334 (354)
T 1x0v_A 296 LLNGQKLQGPETARELYSILQHKGLVDK--FPLFMAVYKVC 334 (354)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHTCGGG--SHHHHHHHHHH
T ss_pred hcCCcEeehHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHH
Confidence 3333 6889999999999999 7 66666655543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=179.68 Aligned_cols=266 Identities=13% Similarity=0.082 Sum_probs=171.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh---c
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV---S 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~ 77 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++.+++....+...+- . . ..++.++++ .+.. +
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~-~----~~~~~~~~~-~~~~~~~~ 73 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKNGLIADFNGE-E-V----VANLPIFSP-EEIDHQNE 73 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHCEEEEETTE-E-E----EECCCEECG-GGCCTTSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhCCEEEEeCCC-e-e----Eecceeecc-hhhcccCC
Confidence 58999999999999999999998 99999999999999988763221111000 0 0 012333332 3333 4
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||++ .+.++++++.+.++++++|+..++ ..++.+.+.+.+.+... ..-....+.+
T Consensus 74 ~~d~vi~~v~~~---------------~~~~v~~~l~~~l~~~~~iv~~~~-g~~~~~~l~~~~~~~~v-i~g~~~~~~~ 136 (316)
T 2ew2_A 74 QVDLIIALTKAQ---------------QLDAMFKAIQPMITEKTYVLCLLN-GLGHEDVLEKYVPKENI-LVGITMWTAG 136 (316)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHGGGCCTTCEEEECCS-SSCTHHHHTTTSCGGGE-EEEEECCCCE
T ss_pred CCCEEEEEeccc---------------cHHHHHHHHHHhcCCCCEEEEecC-CCCcHHHHHHHcCCccE-EEEEeeeeeE
Confidence 899999999842 357888999999998998887654 34454555544433210 0001122334
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH---------------
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~--------------- 222 (480)
+..|+........ .+.++.. ...+++..+.++++|+..+. ......++..++|.|++.|+.
T Consensus 137 ~~~p~~~~~~~~g--~~~i~~~-~~~~~~~~~~~~~ll~~~g~-~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~ 212 (316)
T 2ew2_A 137 LEGPGRVKLLGDG--EIELENI-DPSGKKFALEVVDVFQKAGL-NPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEF 212 (316)
T ss_dssp EEETTEEEECSCC--CEEEEES-SGGGHHHHHHHHHHHHHTTC-CEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHH
T ss_pred EcCCCEEEEecCC--cEEEeec-CCCccHHHHHHHHHHHhCCC-CcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHH
Confidence 5556554332222 2334432 11247788999999999863 345567899999999999963
Q ss_pred ------HHHHHHHHHHHHHHHHHhCCCH--HHHHHHhcC--C----CCCCCCCc-cC-CCCccccchhHhHHHHHHHHHH
Q 011641 223 ------LAQRISSVNAMSALCEATGANV--SQVAFAVGT--D----SRIGPKFL-NA-SVGFGGSCFQKDILNLVYICEC 286 (480)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~Gid~--~~v~~~~~~--~----~~~~~~~~-~p-g~g~gG~cl~kD~~~l~~~a~~ 286 (480)
+.+..+.++|+..+++++|+++ ..+.+.+.. . ++..+.++ .. ..|+--. +.+|..++.+.+++
T Consensus 213 ~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~~E-~~~~~~~~~~~a~~ 291 (316)
T 2ew2_A 213 GALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRLTE-IDYINGAVWRKGQK 291 (316)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCCCS-GGGTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCCCcHHHHHHHHcCCcch-HHHHhhHHHHHHHH
Confidence 3677889999999999999986 355555432 1 11101010 12 3344445 78999999999999
Q ss_pred CCCChhhHHHHHH
Q 011641 287 NGLPEVAEYWKQV 299 (480)
Q Consensus 287 ~g~~~~~~~~~~~ 299 (480)
+|++ .++.+.+
T Consensus 292 ~gv~--~P~~~~~ 302 (316)
T 2ew2_A 292 YNVA--TPFCAML 302 (316)
T ss_dssp HTCC--CHHHHHH
T ss_pred hCCC--CCHHHHH
Confidence 9998 5555543
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=186.65 Aligned_cols=257 Identities=15% Similarity=0.172 Sum_probs=173.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||+++|..|+++ |++|++||+++++++.+++.+...++++.. .++++++++++ ++++|+
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~--G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~~~~-~~~aDv 83 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN--GEEVILWARRKEIVDLINVSHTSPYVEESK--------ITVRATNDLEE-IKKEDI 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHSCBTTBTTCC--------CCSEEESCGGG-CCTTEE
T ss_pred CcEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCcccCCCCe--------eeEEEeCCHHH-hcCCCE
Confidence 8999999999999999999998 999999999999999998643222333331 03677888888 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec-CCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
||+|||++ .++++++++.+ ++++||..+ ++.+++.+.+.+.+.+..+ ..+.+..+|.+..
T Consensus 84 Vil~vk~~---------------~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~ 144 (335)
T 1z82_A 84 LVIAIPVQ---------------YIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAE 144 (335)
T ss_dssp EEECSCGG---------------GHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHH
T ss_pred EEEECCHH---------------HHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHH
Confidence 99999842 24666666554 678888777 5677666666666655322 2345566776544
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhH-----------------hHHH
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAA-----------------NAFL 223 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~-----------------N~~~ 223 (480)
+... ..+..+++|+. + .+.++++|+..+. ......|+...+|.|++. |.++
T Consensus 145 ~~~~----g~~~~~~~g~~-----~--~~~~~~ll~~~g~-~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~ 212 (335)
T 1z82_A 145 EVAK----KLPTAVTLAGE-----N--SKELQKRISTEYF-RVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKA 212 (335)
T ss_dssp HHHT----TCCEEEEEEET-----T--HHHHHHHHCCSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhC----CCceEEEEEeh-----h--HHHHHHHhCCCCE-EEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHH
Confidence 2111 12224556654 2 6788999988652 334556777777765554 4556
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--------CC--C---CCCCCccCCCCcc------ccch--hHhHHHHHH
Q 011641 224 AQRISSVNAMSALCEATGANVSQVAFAVGT--------DS--R---IGPKFLNASVGFG------GSCF--QKDILNLVY 282 (480)
Q Consensus 224 ~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~--------~~--~---~~~~~~~pg~g~g------G~cl--~kD~~~l~~ 282 (480)
++...+++|+..++++.|+|+.++.++.+. ++ + .+..+. -|..+. |.+. .||..++.+
T Consensus 213 a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~-~g~~~~~~~~~~g~~~e~~~~~~~v~~ 291 (335)
T 1z82_A 213 ALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIA-RGFNPLKLLESSNQVVEGAFTVKAVMK 291 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHH-HTCCHHHHHHTCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHh-CCCCHHHHHHhcCCeeeHHHHHHHHHH
Confidence 788899999999999999999877543210 11 0 111111 111111 3333 599999999
Q ss_pred HHHHCCCChhhHHHHHHHHHh
Q 011641 283 ICECNGLPEVAEYWKQVIKIN 303 (480)
Q Consensus 283 ~a~~~g~~~~~~~~~~~~~~N 303 (480)
++++.|++ .++.+.+.++.
T Consensus 292 ~a~~~gv~--~P~~~~v~~~~ 310 (335)
T 1z82_A 292 IAKENKID--MPISEEVYRVV 310 (335)
T ss_dssp HHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHhCCC--CcHHHHHHHHH
Confidence 99999998 67777666544
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=167.00 Aligned_cols=198 Identities=14% Similarity=0.143 Sum_probs=131.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.|||+|||+|.||.++|..|+++ |++|++||+++++ .+...... .....+++... .+... ++++++++++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~-~~~~~e~~~~ 90 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPKATLARAEPDAM---GAPPFSQWLPE--HPHVH-LAAFADVAAG 90 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHTCC----------CCHHHHGGG--STTCE-EEEHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhhhhh---cchhhhHHHhh--cCcee-ccCHHHHHhc
Confidence 37999999999999999999998 9999999999987 11110000 00001111111 02233 4567788899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHH-HhhCCCCcEEEEec-----------CCCcchHHHHHHHHHhcCC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVI-ADVSKSDKIVVEKS-----------TVPVKTAEAIEKILTHNSK 146 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~S-----------Tv~~gt~~~l~~~l~~~~~ 146 (480)
||+||+|||++. +.+++.++ .+.+ ++++||+.| |+.|++...+.+.+++..+
T Consensus 91 aDvVilavp~~~---------------~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~ 154 (245)
T 3dtt_A 91 AELVVNATEGAS---------------SIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP 154 (245)
T ss_dssp CSEEEECSCGGG---------------HHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST
T ss_pred CCEEEEccCcHH---------------HHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC
Confidence 999999998532 34556667 6666 789999988 7777776655555554321
Q ss_pred CC----ceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH
Q 011641 147 GI----KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF 222 (480)
Q Consensus 147 g~----~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~ 222 (480)
+. .+..+.+|....+..+... +..+++++. ++++.+.++++|+.++....++.++++.|..+|+++|.+
T Consensus 155 ~~~vv~~~~~~~a~v~~~~~~a~~g---~~~~~v~g~----d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~ 227 (245)
T 3dtt_A 155 EAKVVKTLNTMNASLMVDPGRAAGG---DHSVFVSGN----DAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVW 227 (245)
T ss_dssp TSEEEECSTTSCHHHHHCGGGTGGG---CCCEEEECS----CHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHH
T ss_pred CCeEEEeecccCHHHhcCccccCCC---CeeEEEECC----CHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHH
Confidence 10 1223455655554433221 223667776 478999999999998732246788999999999999999
Q ss_pred HHHHHHH
Q 011641 223 LAQRISS 229 (480)
Q Consensus 223 ~~~~ia~ 229 (480)
..+++++
T Consensus 228 ~~l~~~~ 234 (245)
T 3dtt_A 228 IRLWGAL 234 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9888654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-17 Score=159.37 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=143.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
||||+|||+|.||..+|..|+++ |+ +|++||+++++++.+++... ....+++++++++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~--g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~ 61 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDF 61 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGGGGT
T ss_pred CcEEEEEecCHHHHHHHHHHHhc--CCCcEEEEEeCCHHHHHHHHHCCC-----------------cccccCCHHHHhcC
Confidence 78999999999999999999998 88 99999999999887764210 0134567777788
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|||.. .+.++++++.+.++++++|++.+++.+.+.+.+.+.+.+.. ...+-.++++
T Consensus 62 ~aDvVilavp~~---------------~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~--v~~~p~~~~~ 124 (281)
T 2g5c_A 62 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHPIAGTE 124 (281)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGE--ECEEEECCCS
T ss_pred CCCEEEEcCCHH---------------HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccc--eeeccccCCc
Confidence 999999999842 34677788888899999999888887776677777765410 0112234455
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHhhhhHhHHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+|+.+..+++....+++... ...+++..+.++++|+.++ ..++. .+....+++|++.|....+.+++++.+..
T Consensus 125 ~~gp~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g--~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~ 200 (281)
T 2g5c_A 125 KSGVEYSLDNLYEGKKVILTPT-KKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIH 200 (281)
T ss_dssp CCSGGGCCSSTTTTCEEEECCC-SSSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCChhhhhhHHhCCCCEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566776666655554445421 1125788999999999985 34544 44566899999999988888888887765
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-16 Score=156.72 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=137.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH-hhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~ 77 (480)
+|||+|||+|.||.++|..|++. |+ +|++||+++++++.+.+.+. .-..++++++ +++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~G~-----------------~~~~~~~~~~~~~~ 93 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDF 93 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCTTGGGGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHCCC-----------------cchhcCCHHHHhhc
Confidence 37999999999999999999998 88 99999999998887664210 0145677787 899
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|||.. .+.++++++.+.++++++|++.+++.+...+.+.+.+.+.. ...+-.++|+
T Consensus 94 ~aDvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~--v~~hPm~G~e 156 (314)
T 3ggo_A 94 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHPIAGTE 156 (314)
T ss_dssp CCSEEEECSCGG---------------GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGE--ECEEECCCCC
T ss_pred cCCEEEEeCCHH---------------HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCE--EecCcccCCc
Confidence 999999999842 24677889999999999999988887766777766664310 0112233445
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCc-hhHHHhhhhHhHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNL-WSAELSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
..++..+..+++....+++.. .+..+++..+.++++|+.++ ..+..++. +....++++...-..+..++++.+
T Consensus 157 ~sG~~~A~~~Lf~g~~~il~~-~~~~~~~~~~~v~~l~~~~G--~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~ 230 (314)
T 3ggo_A 157 KSGVEYSLDNLYEGKKVILTP-TKKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDTL 230 (314)
T ss_dssp CCSGGGCCTTTTTTCEEEECC-CTTSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcCCEEEEEe-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655555532 22236889999999999986 35555554 455777777776665555665554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=161.70 Aligned_cols=192 Identities=21% Similarity=0.291 Sum_probs=133.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.||.+||.+|+ + |++|++||+++++++.+.+. + .++. .++++.++|+++ +++||+
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~---l----~~~~-----~~~i~~~~~~~~-~~~aDl 76 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQ---I----PEEL-----LSKIEFTTTLEK-VKDCDI 76 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHH---S----CGGG-----GGGEEEESSCTT-GGGCSE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHH---H----HHHH-----hCCeEEeCCHHH-HcCCCE
Confidence 68999999999999999999 8 99999999999998887653 1 1111 136888899876 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--CCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~ 158 (480)
||.|||... +++ ..++.++.+. ++++++ +.||+++..... .+..... |.+| ++|..
T Consensus 77 Vieavpe~~-----------~vk--~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf---~~Pv~ 135 (293)
T 1zej_A 77 VMEAVFEDL-----------NTK--VEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHW---MNPPH 135 (293)
T ss_dssp EEECCCSCH-----------HHH--HHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEE---CSSTT
T ss_pred EEEcCcCCH-----------HHH--HHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEe---cCccc
Confidence 999998642 222 3455667666 788774 678888764322 1111110 2222 34543
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHHHH
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+ + -.++.|.. + ++++++++.++++.+++ .+++..+. |+++|.+ +++++|...+++
T Consensus 136 ~~~------l---veiv~g~~-t--~~~~~~~~~~l~~~lGk-~~v~v~d~------fi~Nrll----~~~~~EA~~l~~ 192 (293)
T 1zej_A 136 VMP------L---VEIVISRF-T--DSKTVAFVEGFLRELGK-EVVVCKGQ------SLVNRFN----AAVLSEASRMIE 192 (293)
T ss_dssp TCC------E---EEEEECTT-C--CHHHHHHHHHHHHHTTC-EEEEEESS------CHHHHHH----HHHHHHHHHHHH
T ss_pred cCC------E---EEEECCCC-C--CHHHHHHHHHHHHHcCC-eEEEeccc------ccHHHHH----HHHHHHHHHHHH
Confidence 321 1 12444432 2 58999999999999873 45555543 6666644 468999999999
Q ss_pred HhCCCHHHHHHHhcCC
Q 011641 239 ATGANVSQVAFAVGTD 254 (480)
Q Consensus 239 ~~Gid~~~v~~~~~~~ 254 (480)
+ |+|++++.+++...
T Consensus 193 ~-Gv~~e~id~~~~~g 207 (293)
T 1zej_A 193 E-GVRAEDVDRVWKHH 207 (293)
T ss_dssp H-TCCHHHHHHHHHTT
T ss_pred h-CCCHHHHHHHHHhc
Confidence 9 88999999999854
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=168.22 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=140.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----CCCcCCC-hHH-HHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDG-VVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----~~~~e~~-l~~-~~~~~~~~~l~~t~d~~~a 75 (480)
+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+.. ....+.+ ++. -... ...++++++|++ +
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-~~~~i~~~~~~~-~ 81 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCER-TLKRLIPVTDIH-A 81 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHH-HHHTEEEECCGG-G
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-HHhceeEeCCHH-H
Confidence 5899999999999999999998 999999999999988765310 0000011 000 0000 013688899986 5
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--CCceEE
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (480)
+++||+||+|||+. +....++++++.+.+++++++ .+.||+++.. +.+.+..... |.+|
T Consensus 82 ~~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~~IlasntSti~i~~---ia~~~~~p~~~ig~hf-- 143 (483)
T 3mog_A 82 LAAADLVIEAASER-------------LEVKKALFAQLAEVCPPQTLLTTNTSSISITA---IAAEIKNPERVAGLHF-- 143 (483)
T ss_dssp GGGCSEEEECCCCC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTSSSGGGEEEEEE--
T ss_pred hcCCCEEEEcCCCc-------------HHHHHHHHHHHHHhhccCcEEEecCCCCCHHH---HHHHccCccceEEeee--
Confidence 89999999999853 223367888999999999988 5678887642 2222211110 1111
Q ss_pred eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
++|....+ + ..++++..+ ++++.+.+.++++.+++ .++.+.+.. .|+++|.+. +++||
T Consensus 144 -~~Pa~v~~------L----vevv~g~~T--s~e~~~~~~~l~~~lGk-~~v~v~d~~----Gfi~Nr~l~----~~~~E 201 (483)
T 3mog_A 144 -FNPAPVMK------L----VEVVSGLAT--AAEVVEQLCELTLSWGK-QPVRCHSTP----GFIVNRVAR----PYYSE 201 (483)
T ss_dssp -CSSTTTCC------E----EEEEECSSC--CHHHHHHHHHHHHHTTC-EEEEEESCT----TTTHHHHTH----HHHHH
T ss_pred -cChhhhCC------e----EEEecCCCC--CHHHHHHHHHHHHHhCC-EEEEEeccC----cchHHHHHH----HHHHH
Confidence 33332221 1 234565432 68899999999999874 456665543 266666443 48999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC
Q 011641 233 MSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 233 ~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
...++++.++|++++.+++...
T Consensus 202 a~~l~~~g~~~~~~id~a~~~~ 223 (483)
T 3mog_A 202 AWRALEEQVAAPEVIDAALRDG 223 (483)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999999999999999754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=155.92 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=135.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc------------CCCCCcCC-----ChHHHHhhhcC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEP-----GLDGVVKQCRG 63 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------~~~~~~e~-----~l~~~~~~~~~ 63 (480)
|+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+ |... +. ..+.. .
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~--~~~~~~~~~~~~-----~ 85 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAE--NPKAGDEFVEKT-----L 85 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSS--CHHHHHHHHHHH-----H
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCC--ccccchhhHHHH-----H
Confidence 57899999999999999999998 9999999999998876432 1100 00 00000 1
Q ss_pred CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE-ecCCCcchHHHHHHHHH
Q 011641 64 KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILT 142 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~ 142 (480)
.++++++|+++++++||+||+|||++. .....+++++.+.++++++|+. .|++++. .+.+.+.
T Consensus 86 ~~i~~~~~~~~~~~~aD~Vi~avp~~~-------------~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~---~l~~~~~ 149 (302)
T 1f0y_A 86 STIATSTDAASVVHSTDLVVEAIVENL-------------KVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATT 149 (302)
T ss_dssp HTEEEESCHHHHTTSCSEEEECCCSCH-------------HHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSS
T ss_pred hceEEecCHHHhhcCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcC
Confidence 257889999888999999999998532 2235677889888988888763 4565543 2322221
Q ss_pred hcCCCCceEEe---eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhH
Q 011641 143 HNSKGIKFQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAA 219 (480)
Q Consensus 143 ~~~~g~~~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~ 219 (480)
... .+ +. ++|.+..+ ...+ +++.. .+++..+.+.++|+.++. .++...+. . .++++
T Consensus 150 ~~~---~~-~g~h~~~P~~~~~---------~~~i-~~g~~--~~~e~~~~~~~l~~~~G~-~~v~~~~~-~---g~i~n 208 (302)
T 1f0y_A 150 RQD---RF-AGLHFFNPVPVMK---------LVEV-IKTPM--TSQKTFESLVDFSKALGK-HPVSCKDT-P---GFIVN 208 (302)
T ss_dssp CGG---GE-EEEEECSSTTTCC---------EEEE-ECCTT--CCHHHHHHHHHHHHHTTC-EEEEECSC-T---TTTHH
T ss_pred Ccc---cE-EEEecCCCcccCc---------eEEE-eCCCC--CCHHHHHHHHHHHHHcCC-ceEEecCc-c---cccHH
Confidence 110 11 11 23433221 1123 44432 258899999999999863 34444432 1 14444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 220 NAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 220 N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
| +.++++||.+.++++.++|++++..++...
T Consensus 209 r----~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g 239 (302)
T 1f0y_A 209 R----LLVPYLMEAIRLYERGDASKEDIDTAMKLG 239 (302)
T ss_dssp H----HHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 4 345789999999999999999999988643
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=158.88 Aligned_cols=264 Identities=14% Similarity=0.117 Sum_probs=160.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcC--C-C-CeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKC--P-S-IEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~--~-G-~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+|||+|||+|.||.++|..|+++. + | ++|++||+ +++++.+++ .+..+.++..+.. ..++.++++.+ .
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~~-~ 80 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFL-----ARPTCVTDNPA-E 80 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEE-----ECCSEEESCHH-H
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeE-----EecceEecCcc-c
Confidence 379999999999999999999740 0 5 89999999 888999887 4433322111000 01345667765 4
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEee-
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS- 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~- 154 (480)
+..+|+||+|||++. +.++++++.+.++++++|+..++ ..+..+.+.+.+.+.. .-..+.+
T Consensus 81 ~~~~D~vil~vk~~~---------------~~~v~~~i~~~l~~~~~iv~~~n-G~~~~~~l~~~l~~~~--v~~g~~~~ 142 (317)
T 2qyt_A 81 VGTVDYILFCTKDYD---------------MERGVAEIRPMIGQNTKILPLLN-GADIAERMRTYLPDTV--VWKGCVYI 142 (317)
T ss_dssp HCCEEEEEECCSSSC---------------HHHHHHHHGGGEEEEEEEEECSC-SSSHHHHHTTTSCTTT--BCEEEEEE
T ss_pred cCCCCEEEEecCccc---------------HHHHHHHHHhhcCCCCEEEEccC-CCCcHHHHHHHCCCCc--EEEEEEEE
Confidence 789999999998642 46788899998888888776543 4555555544443311 0011112
Q ss_pred CCccccccccccccCCCCeEEEecC-CCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHH----------
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGR-ETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL---------- 223 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~-~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~---------- 223 (480)
...+..||...+.. ....+++|+. +.. +.+.. .++++|+..+. ...+..++..++|.|++.|+..
T Consensus 143 ~a~~~~pg~~~~~~-~g~~~~ig~~~~~~-~~~~~-~~~~ll~~~g~-~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~ 218 (317)
T 2qyt_A 143 SARKSAPGLITLEA-DRELFYFGSGLPEQ-TDDEV-RLAELLTAAGI-RAYNPTDIDWYIMKKFMMISVTATATAYFDKP 218 (317)
T ss_dssp EEEEEETTEEEEEE-EEEEEEEECCSSSC-CHHHH-HHHHHHHHTTC-CEECCSCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred EEEEcCCCEEEEcC-CCceEEEcCCCCCC-cCHHH-HHHHHHHHCCC-CCEEchHHHHHHHHHHHHHHhhHHHHHHHCCC
Confidence 22233455433221 1122336753 221 24556 88999998753 3455679999999999999853
Q ss_pred ---------HHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC----CCCCCCCCc---cCCCCccccchhHhHHHHHHHHH
Q 011641 224 ---------AQRISSVNAMSALCEATGANVS--QVAFAVGT----DSRIGPKFL---NASVGFGGSCFQKDILNLVYICE 285 (480)
Q Consensus 224 ---------~~~ia~~nE~~~l~~~~Gid~~--~v~~~~~~----~~~~~~~~~---~pg~g~gG~cl~kD~~~l~~~a~ 285 (480)
.+..+.++|+..+++++|+++. .+.+.+.. .++..+.++ .+|...-..- ...++.++|+
T Consensus 219 ~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~g~~~E~~~---~~g~~~~~a~ 295 (317)
T 2qyt_A 219 IGSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTEVET---LTGYVVREAE 295 (317)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC--------------------CT---TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCCCCChHHHHHHcCCccCHHH---HhhHHHHHHH
Confidence 5677899999999999999863 34443322 111111111 1221111112 2568889999
Q ss_pred HCCCChhhHHHHH
Q 011641 286 CNGLPEVAEYWKQ 298 (480)
Q Consensus 286 ~~g~~~~~~~~~~ 298 (480)
++|++ .++.+.
T Consensus 296 ~~gv~--~P~~~~ 306 (317)
T 2qyt_A 296 ALRVD--LPMYKR 306 (317)
T ss_dssp HTTCC--CHHHHH
T ss_pred HcCCC--CCHHHH
Confidence 99998 555443
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=162.03 Aligned_cols=253 Identities=15% Similarity=0.130 Sum_probs=158.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ |++|++||+++++++.++.... .+. .+ ...+. +++. ++++++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~l~~~~~----~~~-~~-----~~~~~-~~~~-~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVET----DGS-IF-----NESLT-ANDP-DFLATSDL 66 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECT----TSC-EE-----EEEEE-ESCH-HHHHTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCccceeeEEEEcC----CCc-ee-----eeeee-ecCc-cccCCCCE
Confidence 7999999999999999999998 9999999999876554432110 000 00 00122 3444 45789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCc--eEEeeCCccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK--FQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~--~~v~~~Pe~~ 159 (480)
||+|||++ .+.++++++.+.++++++|+..++ ..++.+.+.+.+.+...+.. .....+| .
T Consensus 67 vi~~v~~~---------------~~~~v~~~l~~~l~~~~~vv~~~~-g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~- 128 (291)
T 1ks9_A 67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEELQNIQQPLLMGTTTHAARRDGN-V- 128 (291)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGGGTTCCSCEEEEEECCEEEEETT-E-
T ss_pred EEEEecHH---------------hHHHHHHHHHhhCCCCCEEEEecC-CCCcHHHHHHhcCCeEEEEEeEccEEcCC-E-
Confidence 99999853 147788999999998888876643 44554444433322000000 0012344 2
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHH----------------
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL---------------- 223 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~---------------- 223 (480)
.. ..... ++.+|.... +++..+.++++|+..+. ...+..++..+.+.|++.|+..
T Consensus 129 ----~~-~~~~g-~~~i~~~~~--~~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~ 199 (291)
T 1ks9_A 129 ----II-HVANG-ITHIGPARQ--QDGDYSYLADILQTVLP-DVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRH 199 (291)
T ss_dssp ----EE-EEECC-CEEEEESSG--GGTTCTHHHHHHHTTSS-CEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred ----EE-Eeccc-ceEEccCCC--CcchHHHHHHHHHhcCC-CCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHh
Confidence 11 11122 244554211 34567788999998763 3456679999999999999877
Q ss_pred --HHHHHHHHHHHHHHHHhCCCH--HHH----HHHhcCCC-CCCCCCccCCCCccccchhHhHHHHHHHHHHCCCChhhH
Q 011641 224 --AQRISSVNAMSALCEATGANV--SQV----AFAVGTDS-RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294 (480)
Q Consensus 224 --~~~ia~~nE~~~l~~~~Gid~--~~v----~~~~~~~~-~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~~~~~~ 294 (480)
.+..+.++|+..+++++|++. .++ .+.+...+ ..++++.....|..- -+..+..++.+.++++|++ .+
T Consensus 200 ~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~~d~~~g~~~-e~~~~~g~~~~~a~~~gv~--~P 276 (291)
T 1ks9_A 200 HPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHT-EIDYINGFLLRRARAHGIA--VP 276 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHHHTTCCC-SGGGTHHHHHHHHHHHTCC--CH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHcCCcc-HHHHHHHHHHHHHHHhCCC--CC
Confidence 788899999999999999986 444 33333221 111111111112111 2336778899999999998 55
Q ss_pred HHHH
Q 011641 295 YWKQ 298 (480)
Q Consensus 295 ~~~~ 298 (480)
+.+.
T Consensus 277 ~~~~ 280 (291)
T 1ks9_A 277 ENTR 280 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=164.37 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=136.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHH--------HH-HcCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN--------AW-NSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--------~l-~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
|+||+|||+|.||.+||..|+++ |++|++||+++++.. .+ .+|... +...+.. ..++++++|
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~--~~~~~~~-----~~~i~~t~d 124 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLN--DKRIEKI-----NANLKITSD 124 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCC--HHHHHHH-----HTTEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCC--HHHHHHH-----hcceEEeCC
Confidence 57999999999999999999998 999999999998432 11 222111 0001111 146889999
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--CC
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
++ ++++||+||+|||+. +.....+++++.+.+++++||+ +.||+++.. +.+.+..... |.
T Consensus 125 l~-al~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~---ia~~~~~p~r~iG~ 187 (460)
T 3k6j_A 125 FH-KLSNCDLIVESVIED-------------MKLKKELFANLENICKSTCIFGTNTSSLDLNE---ISSVLRDPSNLVGI 187 (460)
T ss_dssp GG-GCTTCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH---HHTTSSSGGGEEEE
T ss_pred HH-HHccCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCCEEEecCCChhHHH---HHHhccCCcceEEE
Confidence 86 589999999999853 2234677889999999999885 557777532 3222211100 11
Q ss_pred ceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHH
Q 011641 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| ++|....+ + ..|+.|.. +++++++.+.++++.+++ .++.+.+. .+++.| .+.++
T Consensus 188 Hf---fnPv~~m~------L---vEIv~g~~---Ts~e~~~~~~~l~~~lGk-~~v~v~d~-----pGfi~N---ril~~ 243 (460)
T 3k6j_A 188 HF---FNPANVIR------L---VEIIYGSH---TSSQAIATAFQACESIKK-LPVLVGNC-----KSFVFN---RLLHV 243 (460)
T ss_dssp EC---CSSTTTCC------E---EEEECCSS---CCHHHHHHHHHHHHHTTC-EEEEESSC-----CHHHHH---HHHHH
T ss_pred Ee---cchhhhCC------E---EEEEeCCC---CCHHHHHHHHHHHHHhCC-EEEEEecc-----cHHHHH---HHHHH
Confidence 11 34443221 1 12444432 268999999999999874 55666542 234555 34457
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Q 011641 229 SVNAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
+++|+..++++.|+|++++.+++.
T Consensus 244 ~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 244 YFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999999999999999986
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=160.05 Aligned_cols=293 Identities=18% Similarity=0.193 Sum_probs=175.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCE-EEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~a 79 (480)
|||+|||+|.||..+|..|+++ |++|++||+++++++.+++. ...+.+.+.+. ..++ .++++++++++++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG------TAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE------EECCSEEESCHHHHHTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcCCeEEecccccc------ccccceecCCHHHHHhcC
Confidence 7899999999999999999998 99999999999999988753 22221111100 0123 4678888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC-CCceE-EeeCCc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQ-ILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~-v~~~Pe 157 (480)
|+||+|||++. ..++++++.+.++++++|+...++.+++.+ +.+.+.+.+. ...|. +..+|.
T Consensus 77 D~vi~~v~~~~---------------~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~-~~~~l~~~~~~~v~~~~~~~~~~ 140 (359)
T 1bg6_A 77 DVILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGGALE-FRKILRENGAPEVTIGETSSMLF 140 (359)
T ss_dssp SEEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSHHHH-HHHHHHHTTCCCCEEEEESSCSE
T ss_pred CEEEEeCCchH---------------HHHHHHHHHHhCCCCCEEEEcCCCchHHHH-HHHHHHhcCCCCeEEEEecCCcE
Confidence 99999998642 367788999999999988776443344433 4555555321 11111 123554
Q ss_pred cc---cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhh----------------
Q 011641 158 FL---AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA---------------- 218 (480)
Q Consensus 158 ~~---~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~---------------- 218 (480)
.. .||... .+....++.+|......+++..+.++++|..+. ...++ |.|++
T Consensus 141 ~~~~~gpg~v~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-----~~~di----~~k~~~nvn~~~n~~~al~~~ 210 (359)
T 1bg6_A 141 TCRSERPGQVT-VNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV-----AVENV----LHTSLTNVNAVMHPLPTLLNA 210 (359)
T ss_dssp EEECSSTTEEE-EEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE-----ECSCH----HHHHHCCHHHHHTHHHHHTTH
T ss_pred EEEeCCCCEEE-EEEeecceEEEeccccccHHHHHHHHHHhhhcE-----EcCCh----HhhhccCCCccccHHHHHhhh
Confidence 32 355432 111123456665322224556777777775431 11221 12211
Q ss_pred ----------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCC---C-------CCCCcc--CCC-Ccc
Q 011641 219 ----------------ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSR---I-------GPKFLN--ASV-GFG 269 (480)
Q Consensus 219 ----------------~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~---~-------~~~~~~--pg~-g~g 269 (480)
.|..+.+..+.++|+..+++++|++..++.+.+..... . .+.++. .++ .+-
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~~e~~ 290 (359)
T 1bg6_A 211 ARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLN 290 (359)
T ss_dssp HHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSC
T ss_pred chhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCCCCCC
Confidence 22345777889999999999999998666666543210 0 011111 111 133
Q ss_pred ccchhHhH----HHHHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHHHhcCcC--CCCeEEEEeeccCCCCCccc
Q 011641 270 GSCFQKDI----LNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTV--SNKKIAVLGFAFKKDTGDTR 342 (480)
Q Consensus 270 G~cl~kD~----~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~~v~ilGla~K~~~~d~r 342 (480)
+.-+.||+ .++++.|+++|++ .++.+.+.+. +.....+.. .++++..+|++ +.+++|+|
T Consensus 291 ~~~~~~D~~~~~g~~~~~a~~~gv~--~P~~~~l~~~-----------~~~~~~~~~~~~g~~~~~lgl~-~~~~~~~~ 355 (359)
T 1bg6_A 291 TRYFFEDVSTGLVPLSELGRAVNVP--TPLIDAVLDL-----------ISSLIDTDFRKEGRTLEKLGLS-GLTAAGIR 355 (359)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHTTCC--CHHHHHHHHH-----------HHHHTTCCHHHHSCCTTTTTCT-TCCHHHHH
T ss_pred ccceecCcCccHHHHHHHHHHcCCC--chHHHHHHHH-----------HHHHHCCChhhcCCCHHhcCCC-CCCHHHHH
Confidence 33677887 6889999999998 5555543321 111111111 36678888998 77777765
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=147.92 Aligned_cols=207 Identities=14% Similarity=0.169 Sum_probs=139.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-----------CCCcCCChHHHHhhhcCCCEEEec
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-----------LPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+.. ..+.....+... .+++.++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~~ 77 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKAL-----GGIRYSD 77 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHH-----HHCEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----cCeEEeC
Confidence 5899999999999999999998 999999999999888766420 001111111111 2467889
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++++++++||+||+|||.. ......+++++.+.++++++++ +.|++++ ..+.+.+..... +
T Consensus 78 ~~~~~~~~aDlVi~av~~~-------------~~~~~~v~~~l~~~~~~~~il~s~tS~~~~---~~la~~~~~~~~~ig 141 (283)
T 4e12_A 78 DLAQAVKDADLVIEAVPES-------------LDLKRDIYTKLGELAPAKTIFATNSSTLLP---SDLVGYTGRGDKFLA 141 (283)
T ss_dssp CHHHHTTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHHHHHSCGGGEEE
T ss_pred CHHHHhccCCEEEEeccCc-------------HHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcceEE
Confidence 9998899999999999853 2234677889999999999887 4456653 344444432211 1
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| ++|....+. ..++++.. +++++.+.++++++.++. .++.+.... -.++.|- +..
T Consensus 142 ~h~---~~p~~~~~l----------vevv~~~~--t~~~~~~~~~~l~~~~g~-~~v~v~~~~----~g~i~nr---~~~ 198 (283)
T 4e12_A 142 LHF---ANHVWVNNT----------AEVMGTTK--TDPEVYQQVVEFASAIGM-VPIELKKEK----AGYVLNS---LLV 198 (283)
T ss_dssp EEE---CSSTTTSCE----------EEEEECTT--SCHHHHHHHHHHHHHTTC-EEEECSSCC----TTTTHHH---HHH
T ss_pred Ecc---CCCcccCce----------EEEEeCCC--CCHHHHHHHHHHHHHcCC-EEEEEecCC----CCEEehH---HHH
Confidence 111 234332221 12344432 268899999999999873 445442211 1234452 335
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
++++|...++++.++|++++.+++...
T Consensus 199 ~~~~ea~~l~~~g~~~~~~id~~~~~~ 225 (283)
T 4e12_A 199 PLLDAAAELLVDGIADPETIDKTWRIG 225 (283)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 789999999999999999999998753
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=159.86 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=152.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--------eEEEEECCHH-----HHHHHHcC-CCCCcCCChHHHHhhhcCCCEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--------EVAVVDISVS-----RINAWNSD-QLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--------~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
.||+|||+|.||+++|..|+++ || +|.+|.++++ .++.+++. .++-|.|++. ...+++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n--g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~------Lp~~i~ 106 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN--CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGIT------LPDNLV 106 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCC------CCSSEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc--CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCc------CCCCcE
Confidence 3899999999999999999987 54 5999998865 46777764 4566666652 245799
Q ss_pred EecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-Ccch--HHHHHHHHHhc
Q 011641 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKT--AEAIEKILTHN 144 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt--~~~l~~~l~~~ 144 (480)
+++|++++++++|+||++||+. +++++++++.++++++.++|..+.. .+++ .+.+.+.+.+.
T Consensus 107 ~t~dl~~al~~ad~ii~avPs~---------------~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~ 171 (391)
T 4fgw_A 107 ANPDLIDSVKDVDIIVFNIPHQ---------------FLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEE 171 (391)
T ss_dssp EESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHH
T ss_pred EeCCHHHHHhcCCEEEEECChh---------------hhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHH
Confidence 9999999999999999999963 4788999999999999988877653 3333 23455555554
Q ss_pred CCCCceEEeeCCccccccccccccCCCCeEEEecCCCcc-----hHHHHHHHHHHHhccCCCCeEEeCCchhHHHh----
Q 011641 145 SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPE-----GQKAVKALKDVYAHWVPEDRILTTNLWSAELS---- 215 (480)
Q Consensus 145 ~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~-----~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~---- 215 (480)
. +..+.++++|.+..+-.. ..|+.+++++.+... ++...+.++++|..-. ..++...|+...|+.
T Consensus 172 ~-~~~~~vLsGPs~A~EVa~----~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~-frvy~s~DviGvElgGAlK 245 (391)
T 4fgw_A 172 L-GIQCGALSGANIATEVAQ----EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPY-FHVSVIEDVAGISICGALK 245 (391)
T ss_dssp H-CCEEEEEECSCCHHHHHT----TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTT-EEEEEESCHHHHHHHHHHH
T ss_pred h-CccceeccCCchHHHhhc----CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCC-EEEEEeCCccceehHHHHH
Confidence 3 246778899998765321 345567788753211 1123467888887632 123444687777764
Q ss_pred -------------hhhHhHHHHHHHHHHHHHHHHHHHh
Q 011641 216 -------------KLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 216 -------------Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
++-.|+..++....++||.+|+..+
T Consensus 246 NViAIAaGi~dGlg~G~NakAALitrGl~Em~rlg~al 283 (391)
T 4fgw_A 246 NVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMF 283 (391)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888889999999999998
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-15 Score=147.18 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=121.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||.++|..|+++++|++|++||+++++++.+.+... ....+++++++++++|
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-----------------VDEATADFKVFAALAD 68 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-----------------CSEEESCTTTTGGGCS
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-----------------cccccCCHHHhhcCCC
Confidence 48999999999999999999987445899999999999888764210 0145667777789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC---
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP--- 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P--- 156 (480)
+||+|||.+ .+.++++++.+. ++++++|++.|++.++.++.+.+.+.+.. ..| +..+|
T Consensus 69 vVilavp~~---------------~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~--~~~-v~~~P~~g 130 (290)
T 3b1f_A 69 VIILAVPIK---------------KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKP--VQF-VGSHPMAG 130 (290)
T ss_dssp EEEECSCHH---------------HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSS--CEE-EEEEEC--
T ss_pred EEEEcCCHH---------------HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccC--CEE-EEeCCcCC
Confidence 999999842 246788889888 88899999888887777777777765411 222 33334
Q ss_pred -ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011641 157 -EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (480)
Q Consensus 157 -e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
+...++.+..+++....+++... ...+++..+.++++|+.++ ..++.++.+.
T Consensus 131 ~~~~g~~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~G--~~~~~~~~~~ 183 (290)
T 3b1f_A 131 SHKSGAVAANVNLFENAYYIFSPS-CLTKPNTIPALQDLLSGLH--ARYVEIDAAE 183 (290)
T ss_dssp ---CCTTSCCTTTTTTSEEEEEEC-TTCCTTHHHHHHHHTGGGC--CEEEECCHHH
T ss_pred CCcchHHHhhHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHH
Confidence 44466666555666555544421 1124678899999999985 3555555544
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=152.87 Aligned_cols=257 Identities=19% Similarity=0.219 Sum_probs=164.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||+.+|..|+++ |++|++||++ ++++.+++.+..+..++.+. ..++++++++++ +.++|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~-~~~~D 72 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARG-ATLQALQTAGLRLTEDGATH------TLPVRATHDAAA-LGEQD 72 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCH-HHHHHHHHTCEEEEETTEEE------EECCEEESCHHH-HCCCS
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEECh-HHHHHHHHCCCEEecCCCeE------EEeeeEECCHHH-cCCCC
Confidence 48999999999999999999998 9999999996 67888876443332222110 113567788876 68999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-C-----------------cchHHHHHHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-P-----------------VKTAEAIEKILT 142 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~-----------------~gt~~~l~~~l~ 142 (480)
+||+|||++ .++++++++.+.++++++|+..+.. + .+..+.+.+.+.
T Consensus 73 ~Vilavk~~---------------~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 137 (335)
T 3ghy_A 73 VVIVAVKAP---------------ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP 137 (335)
T ss_dssp EEEECCCHH---------------HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC
T ss_pred EEEEeCCch---------------hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC
Confidence 999999853 3577888899999889887754332 2 233344555543
Q ss_pred hcCCCCceEEee-CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH
Q 011641 143 HNSKGIKFQILS-NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA 221 (480)
Q Consensus 143 ~~~~g~~~~v~~-~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~ 221 (480)
... .-..+.+ +-.+..||.+.+.. ..++.+|..+.. ..+..+.++++|+..+ .......|+....|.|++.|+
T Consensus 138 ~~~--v~~gv~~~~a~~~~pg~v~~~~--~g~~~iG~~~~~-~~~~~~~l~~~l~~~g-~~~~~~~di~~~~w~Kl~~na 211 (335)
T 3ghy_A 138 TRH--VLGCVVHLTCATVSPGHIRHGN--GRRLILGEPAGG-ASPRLASIAALFGRAG-LQAECSEAIQRDIWFKLWGNM 211 (335)
T ss_dssp GGG--EEEEEECCCEEESSTTEEEECS--CCEEEEECTTCS-CCHHHHHHHHHHHHTT-CEEEECSCHHHHHHHHHHTTT
T ss_pred ccc--EEEEEEEEEEEEcCCcEEEECC--CCeEEEecCCCC-cCHHHHHHHHHHHhCC-CCcEeCchHHHHHHHHHHHHh
Confidence 321 0011222 22345666664432 246778864322 2356788888998764 234455799999999977654
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhcCCCCCCCCCccCCCCcccc-chhH
Q 011641 222 ---------------------FLAQRISSVNAMSALCEATGANV----SQVAFAVGTDSRIGPKFLNASVGFGGS-CFQK 275 (480)
Q Consensus 222 ---------------------~~~~~ia~~nE~~~l~~~~Gid~----~~v~~~~~~~~~~~~~~~~pg~g~gG~-cl~k 275 (480)
.+++....++|+..+++++|+++ .++++.....+...+.+++ .. --|. -..-
T Consensus 212 ~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~sSM~q-D~-~~gr~~tEi 289 (335)
T 3ghy_A 212 TMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAFKTSMLQ-DA-EAGRGPLEI 289 (335)
T ss_dssp THHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSCCCTTTC-------CCCCCH
T ss_pred hhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCCCcHHHH-HH-HcCCCCchH
Confidence 46788899999999999999764 4455544432221111211 00 1122 2233
Q ss_pred h--HHHHHHHHHHCCCC
Q 011641 276 D--ILNLVYICECNGLP 290 (480)
Q Consensus 276 D--~~~l~~~a~~~g~~ 290 (480)
| ..++++.|+++|++
T Consensus 290 d~i~G~vv~~a~~~gv~ 306 (335)
T 3ghy_A 290 DALVASVREIGLHVGVP 306 (335)
T ss_dssp HHHTHHHHHHHHHHTCC
T ss_pred HHHhhHHHHHHHHhCCC
Confidence 3 24788999999998
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=169.26 Aligned_cols=207 Identities=17% Similarity=0.174 Sum_probs=137.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----CCCcCCC-hHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|+||+|||+|.||.++|.+|+++ ||+|++||++++.++..++.. ....+.+ +...-.....+++++++|+ ++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~ 388 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ES 388 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GG
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HH
Confidence 57899999999999999999998 999999999999887653210 0000000 0000000112568899998 46
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--CCceEE
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (480)
+++||+||+|||++. ...+.+++++.++++++++|+ ++||+++.. +.+.+..... |.+|
T Consensus 389 ~~~aDlVIeaVpe~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~p~~~iG~hf-- 450 (725)
T 2wtb_A 389 FRDVDMVIEAVIENI-------------SLKQQIFADLEKYCPQHCILASNTSTIDLNK---IGERTKSQDRIVGAHF-- 450 (725)
T ss_dssp GTTCSEEEECCCSCH-------------HHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTCSCTTTEEEEEE--
T ss_pred HCCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHHhcCCCCEEEecC--
Confidence 899999999998642 223567788999999999885 456776643 2222211110 1121
Q ss_pred eeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHH
Q 011641 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
++|.+..+ ...|+.|.. + ++++++.+.++++.+++ .++++.+. .+++.| .+.++++||
T Consensus 451 -~~P~~~~~---------lvevv~g~~-t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~Gfi~N---ril~~~~~E 508 (725)
T 2wtb_A 451 -FSPAHIMP---------LLEIVRTNH-T--SAQVIVDLLDVGKKIKK-TPVVVGNC-----TGFAVN---RMFFPYTQA 508 (725)
T ss_dssp -CSSTTTCC---------EEEEEECSS-C--CHHHHHHHHHHHHHTTC-EEEEEESS-----TTTTHH---HHHHHHHHH
T ss_pred -CCCcccCc---------eEEEEECCC-C--CHHHHHHHHHHHHHhCC-EEEEECCC-----ccHHHH---HHHHHHHHH
Confidence 35554322 112444432 2 58999999999999873 45666543 456677 344678999
Q ss_pred HHHHHHHhCCCHHHHHHHh
Q 011641 233 MSALCEATGANVSQVAFAV 251 (480)
Q Consensus 233 ~~~l~~~~Gid~~~v~~~~ 251 (480)
+..++++ |+|++++.+++
T Consensus 509 a~~l~~~-G~~~e~id~~~ 526 (725)
T 2wtb_A 509 AMFLVEC-GADPYLIDRAI 526 (725)
T ss_dssp HHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHH
Confidence 9999998 99999999998
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-16 Score=169.00 Aligned_cols=203 Identities=17% Similarity=0.214 Sum_probs=136.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh---------hcCCCEEEecC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ---------CRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~---------~~~~~l~~t~d 71 (480)
+|||+|||+|.||.++|.+|+++ |++|++||+++++++...+.. +..++.+++. ...+++++++|
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d 387 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEA----AKLLVGRVDKGRMTPAKMAEVLNGIRPTLS 387 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH----HHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred CCEEEEECCChhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHhcCeEEECC
Confidence 47899999999999999999998 999999999999887632100 0001111110 00124788888
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--CC
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
+ +++++||+||+|||++. .....+++++.+.++++++|+ ++||+++.. +.+.+..... |.
T Consensus 388 ~-~~~~~aDlVIeaV~e~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~~~~~ig~ 450 (715)
T 1wdk_A 388 Y-GDFGNVDLVVEAVVENP-------------KVKQAVLAEVENHVREDAILASNTSTISISL---LAKALKRPENFVGM 450 (715)
T ss_dssp S-TTGGGCSEEEECCCSCH-------------HHHHHHHHHHHTTSCTTCEEEECCSSSCHHH---HGGGCSCGGGEEEE
T ss_pred H-HHHCCCCEEEEcCCCCH-------------HHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH---HHHHhcCccceEEE
Confidence 8 56899999999998632 223567888999999999886 456776542 3222211000 11
Q ss_pred ceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHH
Q 011641 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| ++|.+..+ ...++.|.. + ++++++.+.++++.+++ .++++.+. .+++.|. +.++
T Consensus 451 hf---~~P~~~~~---------lvevv~g~~-t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~Gfi~Nr---il~~ 506 (715)
T 1wdk_A 451 HF---FNPVHMMP---------LVEVIRGEK-S--SDLAVATTVAYAKKMGK-NPIVVNDC-----PGFLVNR---VLFP 506 (715)
T ss_dssp EC---CSSTTTCC---------EEEEEECSS-C--CHHHHHHHHHHHHHTTC-EEEEEESC-----TTTTHHH---HHHH
T ss_pred Ec---cCCcccCc---------eEEEEECCC-C--CHHHHHHHHHHHHHhCC-EeEEEcCC-----CChhhhH---HHHH
Confidence 11 34543322 112444432 2 58999999999999873 45665543 4556663 4458
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Q 011641 229 SVNAMSALCEATGANVSQVAFAV 251 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~ 251 (480)
++||+..++++ |+|++++.+++
T Consensus 507 ~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 507 YFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Confidence 89999999997 99999999998
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-15 Score=143.61 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=131.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|++||+++++++.+++... ....+++++++ .++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~~~-~~~D~ 60 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----------------VDEAGQDLSLL-QTAKI 60 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGG-TTCSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhCCC-----------------CccccCCHHHh-CCCCE
Confidence 7999999999999999999998 8999999999999888764211 01356777787 89999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||.. .+.++++++.+.++++++|+..+++.+...+.+.+.+... ...+-..+++..+|
T Consensus 61 vi~av~~~---------------~~~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~---~~~~p~~g~~~~gp 122 (279)
T 2f1k_A 61 IFLCTPIQ---------------LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQGI 122 (279)
T ss_dssp EEECSCHH---------------HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSSG
T ss_pred EEEECCHH---------------HHHHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhCCE---eecCcccCCccCCH
Confidence 99999842 3577888999999999999887777665555554433210 01112233344456
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
+.+..+++....+++... ...+++..+.++++|+.++. .++...+....+++|++.|.-..+..++++
T Consensus 123 ~~a~~~~~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~p~~i~~al~~ 190 (279)
T 2f1k_A 123 DGAEENLFVNAPYVLTPT-EYTDPEQLACLRSVLEPLGV-KIYLCTPADHDQAVAWISHLPVMVSAALIQ 190 (279)
T ss_dssp GGCCTTTTTTCEEEEEEC-TTCCHHHHHHHHHHHGGGTC-EEEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhHHHhCCCcEEEecC-CCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 665545444433333321 11247889999999999862 344556678899999999975554444443
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=146.91 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=134.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||..+|..|++. |++ |.+||+++++++.+.+. -++..+++++++++++|
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~------------------~g~~~~~~~~~~~~~~D 70 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQK------------------VEAEYTTDLAEVNPYAK 70 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHH------------------TTCEEESCGGGSCSCCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHH------------------cCCceeCCHHHHhcCCC
Confidence 7899999999999999999998 898 99999999998887642 12456778888788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.+ .+.++++++.+.++++++|+..|+..+... +.+.+.+. ......+|-...
T Consensus 71 vvi~av~~~---------------~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~----~~~~~~~~~~g~ 129 (266)
T 3d1l_A 71 LYIVSLKDS---------------AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHY----GVFYPMQTFSKQ 129 (266)
T ss_dssp EEEECCCHH---------------HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSE----EEEEECCCC---
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhc----cCcCCceecCCC
Confidence 999998842 246778888888888999998887654332 32222211 111234442211
Q ss_pred ccccccccCCCCeEEE-ecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch---hHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 161 EGTAIQDLFNPDRVLI-GGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW---SAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 161 ~G~a~~~~~~~~~vvi-G~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~---~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
+. ..+.+.+ +++ |+ +++..+.++++|+.++. .++...+.. ...++|+++|.. ..+..+.|. +
T Consensus 130 ~~---~~~~~~~-~~v~~~-----~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l 195 (266)
T 3d1l_A 130 RE---VDFKEIP-FFIEAS-----STEDAAFLKAIASTLSN-RVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--L 195 (266)
T ss_dssp CC---CCCTTCC-EEEEES-----SHHHHHHHHHHHHTTCS-CEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
T ss_pred ch---hhcCCCe-EEEecC-----CHHHHHHHHHHHHhcCC-cEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
Confidence 11 1223333 445 54 37889999999999862 344444332 457889998862 233444453 6
Q ss_pred HHHhCCCHHHHHHHhcC
Q 011641 237 CEATGANVSQVAFAVGT 253 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~ 253 (480)
+++.|+|.+++.+++..
T Consensus 196 ~~~~Gl~~~~~~~l~~~ 212 (266)
T 3d1l_A 196 LKKYNLPFDVMLPLIDE 212 (266)
T ss_dssp HHHTTCCGGGGHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 78999999888877764
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-15 Score=147.02 Aligned_cols=247 Identities=19% Similarity=0.170 Sum_probs=158.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||+.+|..|+++ |++|++| +++++++.+++.+..+..++.+. ..++.+++++++ +.++|
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~------~~~~~~~~~~~~-~~~~D 88 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEATGLRLETQSFDE------QVKVSASSDPSA-VQGAD 88 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHHCEEEECSSCEE------EECCEEESCGGG-GTTCS
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhCCeEEEcCCCcE------EEeeeeeCCHHH-cCCCC
Confidence 48999999999999999999998 9999999 99999999986433332232210 124567788765 68999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHH-hcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~-~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||+. .++++++++.+.++++++|+.. +...+..+.+.+.+. +...+. +..+-.+.
T Consensus 89 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~-~nGi~~~~~l~~~~~~~vl~g~---~~~~a~~~ 149 (318)
T 3hwr_A 89 LVLFCVKST---------------DTQSAALAMKPALAKSALVLSL-QNGVENADTLRSLLEQEVAAAV---VYVATEMA 149 (318)
T ss_dssp EEEECCCGG---------------GHHHHHHHHTTTSCTTCEEEEE-CSSSSHHHHHHHHCCSEEEEEE---EEEEEEEE
T ss_pred EEEEEcccc---------------cHHHHHHHHHHhcCCCCEEEEe-CCCCCcHHHHHHHcCCcEEEEE---EEEeEEEc
Confidence 999999853 2578899999999999877653 334444455666653 111010 00111223
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH------------------
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------ 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------ 221 (480)
+|+.+.+... .++.+|.. +..+.++++|+..+ .......|+...+|.|++.|+
T Consensus 150 gP~~~~~~~~--g~~~ig~~------~~~~~l~~~l~~~~-~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~ 220 (318)
T 3hwr_A 150 GPGHVRHHGR--GELVIEPT------SHGANLAAIFAAAG-VPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVR 220 (318)
T ss_dssp ETTEEEEEEE--EEEEECCC------TTTHHHHHHHHHTT-CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTT
T ss_pred CCeEEEEcCC--ceEEEcCC------HHHHHHHHHHHhCC-CCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhc
Confidence 3444332221 13556752 23467888888754 234556799999999999886
Q ss_pred ---HHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhcCCCCCCCCCc---cCCCCccccchhHh--HHHHHHHHHHCC
Q 011641 222 ---FLAQRISSVNAMSALCEATGANV-----SQVAFAVGTDSRIGPKFL---NASVGFGGSCFQKD--ILNLVYICECNG 288 (480)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~Gid~-----~~v~~~~~~~~~~~~~~~---~pg~g~gG~cl~kD--~~~l~~~a~~~g 288 (480)
.+.+....+.|+..++++.|++. +.+++.+...+...+.++ .-| .-..-| ..++++.|+++|
T Consensus 221 ~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~g-----r~tEid~i~G~vv~~a~~~g 295 (318)
T 3hwr_A 221 GEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRRIAETMPRQSSSTAQDLARG-----KRSEIDHLNGLIVRRGDALG 295 (318)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSTTCCCHHHHHHHTT-----CCCSGGGTHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCcHHHHHHHcC-----ChhHHHHHHHHHHHHHHHhC
Confidence 34566788999999999999863 334444432221111111 111 111222 247889999999
Q ss_pred CC
Q 011641 289 LP 290 (480)
Q Consensus 289 ~~ 290 (480)
++
T Consensus 296 v~ 297 (318)
T 3hwr_A 296 IP 297 (318)
T ss_dssp CC
T ss_pred CC
Confidence 98
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=154.90 Aligned_cols=205 Identities=15% Similarity=0.150 Sum_probs=136.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh--h-----cCCCEEEecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--C-----RGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~--~-----~~~~l~~t~d~~ 73 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++...+.. +..++..+.. . .....+++++++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 110 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKII----TFTLEKEASRAHQNGQASAKPKLRFSSSTK 110 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHH----HHHHHHHHHHHHHTTCCCCCCCEEEESCGG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhhcCCHH
Confidence 47899999999999999999998 999999999999887765310 0011111111 0 012245678884
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--CCceE
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (480)
++++||+||+|||+. +.....+++++.+.++++++|+. ||..+.++ .+.+.+..... |.+|
T Consensus 111 -~~~~aDlVIeaVpe~-------------~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf- 173 (463)
T 1zcj_A 111 -ELSTVDLVVEAVFED-------------MNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHF- 173 (463)
T ss_dssp -GGTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEE-
T ss_pred -HHCCCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeec-
Confidence 589999999999852 23346788889999999998875 77766654 44443321110 2222
Q ss_pred EeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHH
Q 011641 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (480)
Q Consensus 152 v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
++|....+ ...++.| ..+ ++++++.+.++++.+++ .++++.+ ..+++.|. +...+++
T Consensus 174 --~~P~~~~~---------lvevv~g-~~t--~~e~~~~~~~l~~~lGk-~~v~v~~-----~~gfi~Nr---ll~~~~~ 230 (463)
T 1zcj_A 174 --FSPAHVMR---------LLEVIPS-RYS--SPTTIATVMSLSKKIGK-IGVVVGN-----CYGFVGNR---MLAPYYN 230 (463)
T ss_dssp --CSSTTTCC---------EEEEEEC-SSC--CHHHHHHHHHHHHHTTC-EEEEBCC-----STTTTHHH---HHHHHHH
T ss_pred --CCCcccce---------eEEEeCC-CCC--CHHHHHHHHHHHHHhCC-EEEEECC-----CccHHHHH---HHHHHHH
Confidence 35654322 1124444 322 68999999999999863 4555554 23345563 3345779
Q ss_pred HHHHHHHHhCCCHHHHHHHhc
Q 011641 232 AMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 232 E~~~l~~~~Gid~~~v~~~~~ 252 (480)
|...++++ |++++++.+++.
T Consensus 231 ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 231 QGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp HHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHH
Confidence 99999988 899999999996
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-15 Score=146.44 Aligned_cols=206 Identities=14% Similarity=0.112 Sum_probs=144.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc------------CCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||..+|..++.+ |++|++||++++.++...+ +... .....++.+ .+++.+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~l-----~~i~~~ 78 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLK-GSLSAEEQL-----SLISSC 78 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCC-SSSCHHHHH-----HTEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCC-CccCHHHHH-----hhcccc
Confidence 5899999999999999999998 9999999999986554221 1111 011222222 368899
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+|+++++++||+||.|||.. .+++ ++++++|.+++++++|+. +.|++++.. +...+.....
T Consensus 79 ~~l~~a~~~ad~ViEav~E~-----------l~iK--~~lf~~l~~~~~~~aIlaSNTSsl~is~---ia~~~~~p~r~i 142 (319)
T 3ado_A 79 TNLAEAVEGVVHIQECVPEN-----------LDLK--RKIFAQLDSIVDDRVVLSSSSSCLLPSK---LFTGLAHVKQCI 142 (319)
T ss_dssp CCHHHHTTTEEEEEECCCSC-----------HHHH--HHHHHHHHTTCCSSSEEEECCSSCCHHH---HHTTCTTGGGEE
T ss_pred cchHhHhccCcEEeeccccH-----------HHHH--HHHHHHHHHHhhhcceeehhhhhccchh---hhhhccCCCcEE
Confidence 99999999999999999852 3444 789999999999999884 445556532 2211111110
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHH
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| |+|.+..|- ..||- +..+ ++++.+.+..+++.+++ .++... -+.-.++.| .+.
T Consensus 143 g~Hf---fNP~~~m~L---------VEiv~-g~~T--s~~~~~~~~~~~~~~gk-~pv~v~----kd~pGFi~N---Rl~ 199 (319)
T 3ado_A 143 VAHP---VNPPYYIPL---------VELVP-HPET--SPATVDRTHALMRKIGQ-SPVRVL----KEIDGFVLN---RLQ 199 (319)
T ss_dssp EEEE---CSSTTTCCE---------EEEEE-CTTC--CHHHHHHHHHHHHHTTC-EEEECS----SCCTTTTHH---HHH
T ss_pred EecC---CCCccccch---------HHhcC-CCCC--cHHHHHHHHHHHHHhCC-ccCCcC----CCCCCEeHH---HHH
Confidence 1121 466554431 13554 4433 78999999999999873 444332 234467888 677
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011641 227 ISSVNAMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.++++|...+.++.+++++++..++...
T Consensus 200 ~~~~~EA~~lv~eGvas~edID~~~~~g 227 (319)
T 3ado_A 200 YAIISEAWRLVEEGIVSPSDLDLVMSDG 227 (319)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 9999999999999999999999998765
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=139.87 Aligned_cols=197 Identities=18% Similarity=0.251 Sum_probs=127.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC----eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+|||+|.||.++|..|+++ |+ +|++||+++++++.+.+. .+++.++++++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~--g~~~~~~V~~~~r~~~~~~~~~~~------------------~g~~~~~~~~e~~ 61 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK--NIVSSNQIICSDLNTANLKNASEK------------------YGLTTTTDNNEVA 61 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TSSCGGGEEEECSCHHHHHHHHHH------------------HCCEECSCHHHHH
T ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCCCCeEEEEeCCHHHHHHHHHH------------------hCCEEeCChHHHH
Confidence 47999999999999999999998 88 999999999999887641 0256778888888
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEE-EecCCCcchHHHHHHHHHhcCCCCceEEe--
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGIKFQIL-- 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~-- 153 (480)
+++|+||+||| |. .+.++++++.+.++++++|+ +.++++ .+.+.+.+.... . .+.
T Consensus 62 ~~aDvVilav~-~~--------------~~~~v~~~l~~~l~~~~~vvs~~~gi~---~~~l~~~~~~~~---~-~v~~~ 119 (247)
T 3gt0_A 62 KNADILILSIK-PD--------------LYASIINEIKEIIKNDAIIVTIAAGKS---IESTENAFNKKV---K-VVRVM 119 (247)
T ss_dssp HHCSEEEECSC-TT--------------THHHHC---CCSSCTTCEEEECSCCSC---HHHHHHHHCSCC---E-EEEEE
T ss_pred HhCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEecCCCC---HHHHHHHhCCCC---c-EEEEe
Confidence 99999999996 32 24677888988898888877 233444 334555554311 1 122
Q ss_pred -eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-hhhhHhHHHHHHHHHHH
Q 011641 154 -SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-SKLAANAFLAQRISSVN 231 (480)
Q Consensus 154 -~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~-~Kl~~N~~~~~~ia~~n 231 (480)
..|....+|. ..+..+. ..+++..+.++++|+.++. .+.. +...... +.+. ...-+....++.
T Consensus 120 p~~p~~~~~g~---------~~~~~~~--~~~~~~~~~~~~l~~~~G~--~~~~-~e~~~d~~~a~~-g~gpa~~~~~~e 184 (247)
T 3gt0_A 120 PNTPALVGEGM---------SALCPNE--MVTEKDLEDVLNIFNSFGQ--TEIV-SEKLMDVVTSVS-GSSPAYVYMIIE 184 (247)
T ss_dssp CCGGGGGTCEE---------EEEEECT--TCCHHHHHHHHHHHGGGEE--EEEC-CGGGHHHHHHHH-HHHHHHHHHHHH
T ss_pred CChHHHHcCce---------EEEEeCC--CCCHHHHHHHHHHHHhCCC--EEEe-CHHHccHHHHHh-ccHHHHHHHHHH
Confidence 3444333332 1233322 1257889999999999862 4444 3222222 2222 222233344555
Q ss_pred HHHHHHHHhCCCHHHHHHHhcCC
Q 011641 232 AMSALCEATGANVSQVAFAVGTD 254 (480)
Q Consensus 232 E~~~l~~~~Gid~~~v~~~~~~~ 254 (480)
.+...+.+.|+|.++..+++...
T Consensus 185 al~~a~~~~Gl~~~~a~~~~~~~ 207 (247)
T 3gt0_A 185 AMADAAVLDGMPRNQAYKFAAQA 207 (247)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 55555889999999999988743
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=147.00 Aligned_cols=204 Identities=14% Similarity=0.087 Sum_probs=134.5
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+ |.||.++|..|+++ |++|++||+++++++.+.+.. ++.+ +..+++++|
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~g-------------------~~~~-~~~~~~~~a 68 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGMG-------------------IPLT-DGDGWIDEA 68 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHTT-------------------CCCC-CSSGGGGTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhcC-------------------CCcC-CHHHHhcCC
Confidence 479999999 99999999999998 999999999999988876521 1122 445668899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.. .+.++++++.+.++++++|+..|+..+ .+.+. +...+.. ++..+|.+.
T Consensus 69 DvVi~av~~~---------------~~~~v~~~l~~~l~~~~ivv~~s~~~~--~~~l~----~~~~~~~-~v~~~P~~~ 126 (286)
T 3c24_A 69 DVVVLALPDN---------------IIEKVAEDIVPRVRPGTIVLILDAAAP--YAGVM----PERADIT-YFIGHPCHP 126 (286)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEESCSHHH--HHTCS----CCCTTSE-EEEEEECCS
T ss_pred CEEEEcCCch---------------HHHHHHHHHHHhCCCCCEEEECCCCch--hHHHH----hhhCCCe-EEecCCCCc
Confidence 9999999842 357888899999999999987666432 22222 1111222 333666543
Q ss_pred cc---cc---cccccCC----CCeEEEecCCCcchHHHHHHHHHHHhccCCCC---eEEeCCchhHHHh-hhhHhHHHHH
Q 011641 160 AE---GT---AIQDLFN----PDRVLIGGRETPEGQKAVKALKDVYAHWVPED---RILTTNLWSAELS-KLAANAFLAQ 225 (480)
Q Consensus 160 ~~---G~---a~~~~~~----~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~---~v~~~~~~~ae~~-Kl~~N~~~~~ 225 (480)
.+ +. ...+... ...++++... +++..+.++++|+.++ . .++..+....... |.+.|.....
T Consensus 127 ~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~---~~~~~~~v~~l~~~~G--~~~~~~~~v~~~~~~~~~~a~~n~~~~~ 201 (286)
T 3c24_A 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQG---PEEHYAIGADICETMW--SPVTRTHRVTTEQLAILEPGLSEMVAMP 201 (286)
T ss_dssp CSSCCCCSHHHHTCSSSSSSCEEEEEEEEES---CTHHHHHHHHHHHHHT--CSEEEEEECCHHHHHHHTTHHHHTTHHH
T ss_pred cccccccchhhccCcccccccceeeeeccCC---CHHHHHHHHHHHHHhc--CCcceEEEeChhHhHHHHHHHHHHHHHH
Confidence 22 11 1111100 0112222111 3678999999999985 3 3444444444444 9999865554
Q ss_pred -HHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 226 -RISSVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 226 -~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
.+++++++...+.+.|+|.+++.+++..
T Consensus 202 ~~~~~~eal~~~~~~~Gl~~~~~~~~~~~ 230 (286)
T 3c24_A 202 FVETMVHAVDECADRYGIDRQAALDFMIG 230 (286)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4455555778888889999998888764
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-14 Score=143.22 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=132.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+|||+|||+|.||.++|..|+++ | ++|++||++++ +++.+++. +++++++..+
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~--G~~~~~~V~v~~r~~~~~~~~~l~~~-------------------G~~~~~~~~e 80 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA--GVLAAHKIMASSPDMDLATVSALRKM-------------------GVKLTPHNKE 80 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT--TSSCGGGEEEECSCTTSHHHHHHHHH-------------------TCEEESCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCCcceEEEECCCccHHHHHHHHHc-------------------CCEEeCChHH
Confidence 47899999999999999999998 8 89999999986 77776531 2566778888
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEe
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
++++||+||+||| |. .+.++++++.+.++++++||..++ ++ .+.+.+.+.+..+... .+.
T Consensus 81 ~~~~aDvVilav~-~~--------------~~~~vl~~l~~~l~~~~ivvs~s~gi~---~~~l~~~l~~~~~~~~-vv~ 141 (322)
T 2izz_A 81 TVQHSDVLFLAVK-PH--------------IIPFILDEIGADIEDRHIVVSCAAGVT---ISSIEKKLSAFRPAPR-VIR 141 (322)
T ss_dssp HHHHCSEEEECSC-GG--------------GHHHHHHHHGGGCCTTCEEEECCTTCC---HHHHHHHHHTTSSCCE-EEE
T ss_pred HhccCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEeCCCCC---HHHHHHHHhhcCCCCe-EEE
Confidence 8899999999998 32 357788899999988998887654 33 2346666654311111 222
Q ss_pred eCC---ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhh--HhHHHHHHHH
Q 011641 154 SNP---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA--ANAFLAQRIS 228 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~--~N~~~~~~ia 228 (480)
..| .....| ..++.++.. .+++..+.++++|+.++ ..+....-....++.+. .|.|.. .
T Consensus 142 ~~p~~p~~~~~g---------~~v~~~g~~--~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~a~~g~gpa~~~---~ 205 (322)
T 2izz_A 142 CMTNTPVVVREG---------ATVYATGTH--AQVEDGRLMEQLLSSVG--FCTEVEEDLIDAVTGLSGSGPAYAF---T 205 (322)
T ss_dssp EECCGGGGGTCE---------EEEEEECTT--CCHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHTTTHHHHHH---H
T ss_pred EeCCcHHHHcCC---------eEEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHHHHHHHHhcCHHHHHH---H
Confidence 333 222221 135555542 24678899999999985 34444322222333333 243433 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 229 SVNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 229 ~~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+++.++..+.+.|+|.+...+++..
T Consensus 206 ~~eala~a~~~~Gl~~~~a~~l~~~ 230 (322)
T 2izz_A 206 ALDALADGGVKMGLPRRLAVRLGAQ 230 (322)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5556666688999999888887764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=139.88 Aligned_cols=255 Identities=15% Similarity=0.078 Sum_probs=158.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCC-ChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||+.+|..|+++ |++|++|++++ .+.+++.+..+..+ +-.. . ..+.+++++++ +..+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~----~--~~~~~~~~~~~-~~~~D 71 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD--YEAIAGNGLKVFSINGDFT----L--PHVKGYRAPEE-IGPMD 71 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT--HHHHHHTCEEEEETTCCEE----E--SCCCEESCHHH-HCCCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc--HHHHHhCCCEEEcCCCeEE----E--eeceeecCHHH-cCCCC
Confidence 7999999999999999999998 99999999986 37777543222110 0000 0 02345677765 78999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ....+..+-.+..
T Consensus 72 ~vilavk~~~---------------~~~~l~~l~~~l~~~~~iv~l-~nGi~~~~~l~~~~~~~~v-~~~~~~~~a~~~~ 134 (312)
T 3hn2_A 72 LVLVGLKTFA---------------NSRYEELIRPLVEEGTQILTL-QNGLGNEEALATLFGAERI-IGGVAFLCSNRGE 134 (312)
T ss_dssp EEEECCCGGG---------------GGGHHHHHGGGCCTTCEEEEC-CSSSSHHHHHHHHTCGGGE-EEEEEEEECCBCS
T ss_pred EEEEecCCCC---------------cHHHHHHHHhhcCCCCEEEEe-cCCCCcHHHHHHHCCCCcE-EEEEEEeeeEEcC
Confidence 9999998532 356789999999988877642 3344445566666543210 0001112223445
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-------------------
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
||.+.+.. +..+.+|..+.. +.+..+.+.++|+..+ .......|+...+|.|++.|+
T Consensus 135 p~~v~~~~--~g~~~ig~~~~~-~~~~~~~l~~~l~~~g-~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~ 210 (312)
T 3hn2_A 135 PGEVHHLG--AGRIILGEFLPR-DTGRIEELAAMFRQAG-VDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILAR 210 (312)
T ss_dssp SSEEEECE--EEEEEEEESSCC-CSHHHHHHHHHHHHTT-CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTS
T ss_pred CcEEEECC--CCeEEEecCCCC-ccHHHHHHHHHHHhCC-CCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhC
Confidence 66654332 345778865322 2456778889998764 234556799999999998876
Q ss_pred --HHHHHHHHHHHHHHHHHHhC--CC-----HHHHHHHhcCCCCCCCCCccCCCCccccchhHh--HHHHHHHHHHCCCC
Q 011641 222 --FLAQRISSVNAMSALCEATG--AN-----VSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD--ILNLVYICECNGLP 290 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~G--id-----~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD--~~~l~~~a~~~g~~ 290 (480)
.+.+....+.|+..++++.| ++ .+.+++.....++..+.+++ .. --|.-..-| ..++++.|+++|++
T Consensus 211 ~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~~sSM~q-D~-~~gr~tEid~i~G~vv~~a~~~gv~ 288 (312)
T 3hn2_A 211 DVSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEYKPSMEI-DR-EEGRPLEIAAIFRTPLAYGAREGIA 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSSCCCTTHHHHHHHHHTTSCSCCCHHHH-HH-HTTCCCCHHHHTHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHhcCCCCCchHHH-HH-HhCCCccHHHHhhHHHHHHHHhCCC
Confidence 34566788999999999999 65 34455544432221111110 00 011112222 23678889999998
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-14 Score=139.83 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=156.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcC---CChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYE---PGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e---~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||+.+|..|+++ |++|++|++++ .+.+++....+.. .... . ..+.++++++++.+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~-----~--~~~~~~~~~~~~~~~ 71 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD--YETVKAKGIRIRSATLGDYT-----F--RPAAVVRSAAELETK 71 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT--HHHHHHHCEEEEETTTCCEE-----E--CCSCEESCGGGCSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh--HHHHHhCCcEEeecCCCcEE-----E--eeeeeECCHHHcCCC
Confidence 8999999999999999999998 99999999987 3667653221111 1000 0 023456787775558
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC--
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-- 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-- 156 (480)
+|+||+|||+... .++++.+.+.++++++|+... ...+..+.+.+.+... .++++|
T Consensus 72 ~DlVilavK~~~~---------------~~~l~~l~~~l~~~t~Iv~~~-nGi~~~~~l~~~~~~~------~vl~g~~~ 129 (320)
T 3i83_A 72 PDCTLLCIKVVEG---------------ADRVGLLRDAVAPDTGIVLIS-NGIDIEPEVAAAFPDN------EVISGLAF 129 (320)
T ss_dssp CSEEEECCCCCTT---------------CCHHHHHTTSCCTTCEEEEEC-SSSSCSHHHHHHSTTS------CEEEEEEE
T ss_pred CCEEEEecCCCCh---------------HHHHHHHHhhcCCCCEEEEeC-CCCChHHHHHHHCCCC------cEEEEEEE
Confidence 9999999996432 356788999999888776432 3334445565555432 123333
Q ss_pred ---ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH-----------
Q 011641 157 ---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF----------- 222 (480)
Q Consensus 157 ---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~----------- 222 (480)
.+..||...+.. +..+++|..+.. +.+..+.+.++|+..+ .......|+...+|.|++.|+-
T Consensus 130 ~~a~~~~pg~v~~~~--~~~~~ig~~~~~-~~~~~~~l~~~l~~~~-~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~ 205 (320)
T 3i83_A 130 IGVTRTAPGEIWHQA--YGRLMLGNYPGG-VSERVKTLAAAFEEAG-IDGIATENITTARWQKCVWNAAFNPLSVLSGGL 205 (320)
T ss_dssp EEEEEEETTEEEEEE--EEEEEEEESSSC-CCHHHHHHHHHHHHTT-SCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred eceEEcCCCEEEECC--CCEEEEecCCCC-ccHHHHHHHHHHHhCC-CCceECHHHHHHHHHHHHHHHhhhHHHHHHCCC
Confidence 233455543332 346778854222 2356788889998754 2345567999999999998851
Q ss_pred ---------HHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhcCCCCCCCCCccCCCCccccchhHh--HHHHHHHHHH
Q 011641 223 ---------LAQRISSVNAMSALCEATGANV-----SQVAFAVGTDSRIGPKFLNASVGFGGSCFQKD--ILNLVYICEC 286 (480)
Q Consensus 223 ---------~~~~ia~~nE~~~l~~~~Gid~-----~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD--~~~l~~~a~~ 286 (480)
+.+....+.|+..++++.|++. +.+++.....+...+.+++ .. --|.-..-| ..++++.|++
T Consensus 206 ~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~q-D~-~~gr~tEid~i~G~vv~~a~~ 283 (320)
T 3i83_A 206 DTLDILSTQEGFVRAIMQEIRAVAAANGHPLPEDIVEKNVASTYKMPPYKTSMLV-DF-EAGQPMETEVILGNAVRAGRR 283 (320)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSCCCCCHHHH-HH-HHTCCCCHHHHTHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCCCcHHH-HH-HhCCCchHHHHccHHHHHHHH
Confidence 3456688999999999999873 3444444322211111110 00 001111222 2378889999
Q ss_pred CCCC
Q 011641 287 NGLP 290 (480)
Q Consensus 287 ~g~~ 290 (480)
+|++
T Consensus 284 ~gv~ 287 (320)
T 3i83_A 284 TRVA 287 (320)
T ss_dssp TTCC
T ss_pred hCCC
Confidence 9998
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-14 Score=142.41 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=124.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc---
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
+|||+|||+|.||.++|..|.++ |++|++||+++++++.+.+. ++..+++++++++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~~a~~~-------------------G~~~~~~~~e~~~~a~ 66 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDE-------------------GFDVSADLEATLQRAA 66 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHT-------------------TCCEESCHHHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeeeCCHHHHHHhcc
Confidence 47899999999999999999998 99999999999988876542 1344567776665
Q ss_pred -cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC
Q 011641 78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
+||+||+|||. ..+.++++++.+. +++++|++.+++.+...+.+.+.+.. .. ++..+|
T Consensus 67 ~~aDlVilavP~---------------~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~~----~~-~v~~HP 125 (341)
T 3ktd_A 67 AEDALIVLAVPM---------------TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNMQ----HR-YVGSHP 125 (341)
T ss_dssp HTTCEEEECSCH---------------HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTCG----GG-EECEEE
T ss_pred cCCCEEEEeCCH---------------HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCCC----Cc-EecCCc
Confidence 47999999983 2356778888886 78899998888877666665543321 12 334455
Q ss_pred cc----ccccccccccCCCCeEEEecCCCcchHH--------HHHHHHHHHhccCCCCeEEeCCc-hhHHHhhhhHhHHH
Q 011641 157 EF----LAEGTAIQDLFNPDRVLIGGRETPEGQK--------AVKALKDVYAHWVPEDRILTTNL-WSAELSKLAANAFL 223 (480)
Q Consensus 157 e~----~~~G~a~~~~~~~~~vviG~~~~~~~~~--------~~e~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~ 223 (480)
-. .++..+..+++....+++-.. +..+++ .++.++++|+.++ ..+..++. .....+.++...-.
T Consensus 126 maG~e~sG~~aa~~~Lf~g~~~iltp~-~~~~~e~~~~~~~~~~~~v~~l~~~~G--a~v~~~~~~~HD~~~A~vshlPh 202 (341)
T 3ktd_A 126 MAGTANSGWSASMDGLFKRAVWVVTFD-QLFDGTDINSTWISIWKDVVQMALAVG--AEVVPSRVGPHDAAAARVSHLTH 202 (341)
T ss_dssp CCSCC-CCGGGCCSSTTTTCEEEECCG-GGTSSCCCCHHHHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHH
T ss_pred cccccccchhhhhhHHhcCCeEEEEeC-CCCChhhhccchHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHHHHhHHHH
Confidence 43 344445555655544444221 112345 7889999999986 34555554 44566777766555
Q ss_pred HHHHHHH
Q 011641 224 AQRISSV 230 (480)
Q Consensus 224 ~~~ia~~ 230 (480)
.+..+++
T Consensus 203 ~ia~aL~ 209 (341)
T 3ktd_A 203 ILAETLA 209 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=140.24 Aligned_cols=224 Identities=14% Similarity=0.122 Sum_probs=145.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||+||| +|+||.++|..|++. |++|++||++++. +..+++++|
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~--G~~V~~~~~~~~~--------------------------------~~~~~~~~a 66 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWA--------------------------------VAESILANA 66 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGG--------------------------------GHHHHHTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhC--CCeEEEEECCccc--------------------------------CHHHHhcCC
Confidence 35899999 999999999999998 9999999987531 234568899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ .+.++++++.+.++++++|++.+++.....+.+.+.+ . .. ++..+|.+.
T Consensus 67 DvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~--~~-~v~~hP~~g 125 (298)
T 2pv7_A 67 DVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---T--GA-VLGLHPMFG 125 (298)
T ss_dssp SEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---S--SE-EEEEEECSC
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---C--CC-EEeeCCCCC
Confidence 9999999853 2577888999999999999988887766555544332 1 12 344455433
Q ss_pred cccccccccCCCCeEEE-ecCCCcchHHHHHHHHHHHhccCCCCeEEeCCc-hhHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLI-GGRETPEGQKAVKALKDVYAHWVPEDRILTTNL-WSAELSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vvi-G~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
.+. ..+....+++ .+. +++..+.++++|+.++ ..+..++. ...++++++.+....+.+++++.++
T Consensus 126 ~~~----~~~~g~~~~l~~~~----~~~~~~~v~~l~~~~G--~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~--- 192 (298)
T 2pv7_A 126 ADI----ASMAKQVVVRCDGR----FPERYEWLLEQIQIWG--AKIYQTNATEHDHNMTYIQALRHFSTFANGLHLS--- 192 (298)
T ss_dssp TTC----SCCTTCEEEEEEEE----CGGGTHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT---
T ss_pred CCc----hhhcCCeEEEecCC----CHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 222 1122222333 232 3567889999999985 35555554 4578999999987777778877665
Q ss_pred HHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHH-HHHHHHHCCCChhhHHHHHHHHHhHHhHHHHHHHHHH
Q 011641 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILN-LVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (480)
Q Consensus 238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~-l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
+.|.+..+..+.+. .|| +|... +..++ +.+ ..+|+.....|..... .++.+.+
T Consensus 193 -~~g~~~~~~~~la~-------------~~f------~~~~~~~~ria---~~~--p~~~~di~~sn~~~~~-~l~~~~~ 246 (298)
T 2pv7_A 193 -KQPINLANLLALSS-------------PIY------RLELAMIGRLF---AQD--AELYADIIMDKSENLA-VIETLKQ 246 (298)
T ss_dssp -TSSCCHHHHHHTCC-------------HHH------HHHHHHHHHHH---TSC--HHHHHHHHC----CHH-HHHHHHH
T ss_pred -hcCCCHHHHHhhcC-------------HHH------HHHHHHHHHHh---cCC--HHHHHHHHHHCHHHHH-HHHHHHH
Confidence 37777765554332 112 33222 33333 223 5678877778877776 6666655
Q ss_pred Hh
Q 011641 317 SM 318 (480)
Q Consensus 317 ~l 318 (480)
.+
T Consensus 247 ~l 248 (298)
T 2pv7_A 247 TY 248 (298)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=133.22 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=128.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC---eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+|||+|||+|.||.++|..|+++ |+ +|++||+++++++.+.+. -+++.+++..++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~--g~~~~~V~v~dr~~~~~~~l~~~------------------~gi~~~~~~~~~~~ 62 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN--GYDPNRICVTNRSLDKLDFFKEK------------------CGVHTTQDNRQGAL 62 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT--TCCGGGEEEECSSSHHHHHHHHT------------------TCCEEESCHHHHHS
T ss_pred CCEEEEEcccHHHHHHHHHHHHC--CCCCCeEEEEeCCHHHHHHHHHH------------------cCCEEeCChHHHHh
Confidence 37899999999999999999998 88 999999999999888753 13567788888899
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-CCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++|+||+|||. . .+.++++++.+. ++++++|+.. +.++ .+.+.+.+.... . .+-..
T Consensus 63 ~aDvVilav~p-~--------------~~~~vl~~l~~~~l~~~~iiiS~~agi~---~~~l~~~l~~~~---~-vvr~m 120 (280)
T 3tri_A 63 NADVVVLAVKP-H--------------QIKMVCEELKDILSETKILVISLAVGVT---TPLIEKWLGKAS---R-IVRAM 120 (280)
T ss_dssp SCSEEEECSCG-G--------------GHHHHHHHHHHHHHTTTCEEEECCTTCC---HHHHHHHHTCCS---S-EEEEE
T ss_pred cCCeEEEEeCH-H--------------HHHHHHHHHHhhccCCCeEEEEecCCCC---HHHHHHHcCCCC---e-EEEEe
Confidence 99999999973 1 257888999988 8888777632 2233 345666664321 1 22233
Q ss_pred Cc---cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHhhh--hHhHHHHHHHHH
Q 011641 156 PE---FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW-SAELSKL--AANAFLAQRISS 229 (480)
Q Consensus 156 Pe---~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl--~~N~~~~~~ia~ 229 (480)
|. ....|. ..+..+. ..+++..+.++++|+.++ ..+...+-. -...+-+ ..+.|.. .+
T Consensus 121 Pn~p~~v~~g~---------~~l~~~~--~~~~~~~~~v~~l~~~iG--~~~~v~~E~~~d~~talsgsgpa~~~---~~ 184 (280)
T 3tri_A 121 PNTPSSVRAGA---------TGLFANE--TVDKDQKNLAESIMRAVG--LVIWVSSEDQIEKIAALSGSGPAYIF---LI 184 (280)
T ss_dssp CCGGGGGTCEE---------EEEECCT--TSCHHHHHHHHHHHGGGE--EEEECSSHHHHHHHHHHTTSHHHHHH---HH
T ss_pred cCChHHhcCcc---------EEEEeCC--CCCHHHHHHHHHHHHHCC--CeEEECCHHHhhHHHHHhccHHHHHH---HH
Confidence 42 222211 1233332 235789999999999986 244443311 1111222 2233443 33
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcC
Q 011641 230 VNAMSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 230 ~nE~~~l~~~~Gid~~~v~~~~~~ 253 (480)
+.-+..-+.+.|++.++..+++..
T Consensus 185 ~eal~~a~v~~Gl~~~~a~~l~~~ 208 (280)
T 3tri_A 185 MEALQEAAEQLGLTKETAELLTEQ 208 (280)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444445577899999888887663
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=133.85 Aligned_cols=193 Identities=11% Similarity=0.170 Sum_probs=126.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||..+|..|++. |++|.+||+++++++.+.+.. ++..+++++++++++|
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQL------------------ALPYAMSHQDLIDQVD 62 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHHH------------------TCCBCSSHHHHHHTCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHHc------------------CCEeeCCHHHHHhcCC
Confidence 68999999999999999999987 899999999999988876420 1334567888888999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEeeCC---
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSNP--- 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P--- 156 (480)
+||+|+| |. .+.++++. +.++++|+.. +++++. .+.+.++.. ..+ +-..|
T Consensus 63 ~Vi~~v~-~~--------------~~~~v~~~----l~~~~~vv~~~~~~~~~---~l~~~~~~~---~~~-v~~~p~~~ 116 (259)
T 2ahr_A 63 LVILGIK-PQ--------------LFETVLKP----LHFKQPIISMAAGISLQ---RLATFVGQD---LPL-LRIMPNMN 116 (259)
T ss_dssp EEEECSC-GG--------------GHHHHHTT----SCCCSCEEECCTTCCHH---HHHHHHCTT---SCE-EEEECCGG
T ss_pred EEEEEeC-cH--------------hHHHHHHH----hccCCEEEEeCCCCCHH---HHHHhcCCC---CCE-EEEcCCch
Confidence 9999998 32 12333333 4467777766 356544 344444431 122 11222
Q ss_pred ccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHHHHHHHH
Q 011641 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
.....| ...++.|+. .+++..+.++++|+.++ ..+..........+|+..+.. .....+++.++..
T Consensus 117 ~~~~~g--------~~~i~~~~~---~~~~~~~~~~~ll~~~G--~~~~~~~~~~d~~~al~g~~~-~~~~~~~~~la~~ 182 (259)
T 2ahr_A 117 AQILQS--------STALTGNAL---VSQELQARVRDLTDSFG--STFDISEKDFDTFTALAGSSP-AYIYLFIEALAKA 182 (259)
T ss_dssp GGGTCE--------EEEEEECTT---CCHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHHTTHH-HHHHHHHHHHHHH
T ss_pred HHHcCc--------eEEEEcCCC---CCHHHHHHHHHHHHhCC--CEEEecHHHccHHHHHhccHH-HHHHHHHHHHHHH
Confidence 222222 112333332 14788999999999985 244444445566677653321 1234566677777
Q ss_pred HHHhCCCHHHHHHHhcC
Q 011641 237 CEATGANVSQVAFAVGT 253 (480)
Q Consensus 237 ~~~~Gid~~~v~~~~~~ 253 (480)
+++.|+|.+++.+++..
T Consensus 183 ~~~~Gl~~~~~~~~~~~ 199 (259)
T 2ahr_A 183 GVKNGIPKAKALEIVTQ 199 (259)
T ss_dssp HHHTTCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 99999999999988874
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=129.01 Aligned_cols=186 Identities=15% Similarity=0.104 Sum_probs=125.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||..+|..|+++ |++|+++|+++++.+.+.+.. ...+ ....+.. ++++++++++|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~--g~~V~~~~r~~~~~~~~~~~~--------~~~~---~~~~~~~-~~~~~~~~~~D 66 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAAEY--------RRIA---GDASITG-MKNEDAAEACD 66 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHHHH--------HHHH---SSCCEEE-EEHHHHHHHCS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh--------cccc---ccCCCCh-hhHHHHHhcCC
Confidence 7999999 999999999999998 899999999999888776420 0000 0123553 56777789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CCc-----------chHHHHHHHHHhcCCCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPV-----------KTAEAIEKILTHNSKGI 148 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~-----------gt~~~l~~~l~~~~~g~ 148 (480)
+||+|+|.+ .+.++++++.+.++ +++|+..++ +.+ ...+.+.+.+.. .
T Consensus 67 ~Vi~~~~~~---------------~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~ 126 (212)
T 1jay_A 67 IAVLTIPWE---------------HAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----E 126 (212)
T ss_dssp EEEECSCHH---------------HHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----S
T ss_pred EEEEeCChh---------------hHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----C
Confidence 999998732 24566777777674 888887776 332 225666666642 1
Q ss_pred ceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc-CCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~-~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+.-++.|.......... ......+++++. +++..+.++++|+.+ +. ..+...+.+.+.++|.+.|.+..++.
T Consensus 127 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~g~----~~~~~~~v~~l~~~~~G~-~~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 127 KVVSALHTIPAARFANLD-EKFDWDVPVCGD----DDESKKVVMSLISEIDGL-RPLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp CEEECCTTCCHHHHHCTT-CCCCEEEEEEES----CHHHHHHHHHHHHHSTTE-EEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred eEEEEccchHHHHhhCcC-CCCCccEEEECC----cHHHHHHHHHHHHHcCCC-CceeccchhHHHHhcchHHHHHHHHH
Confidence 233334465443322111 111123456665 378899999999998 63 45566789999999999998765543
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=130.40 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=123.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC----CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+|||+|||+|.||.++|..|+++ | ++|++||+++++ . +++.++++.+++
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~--g~~~~~~v~~~~~~~~~-----~--------------------g~~~~~~~~~~~ 56 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA--NIIKKENLFYYGPSKKN-----T--------------------TLNYMSSNEELA 56 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH--TSSCGGGEEEECSSCCS-----S--------------------SSEECSCHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCCCCCeEEEEeCCccc-----C--------------------ceEEeCCHHHHH
Confidence 37999999999999999999998 8 799999998764 1 145667888888
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce-EE-ee
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF-QI-LS 154 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~v-~~ 154 (480)
+++|+||+|||.. .++++++++.+.++++.+|.+.+++++. .+.+.+.+.. .+ .+ ..
T Consensus 57 ~~~D~vi~~v~~~---------------~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~~---~~v~~~p~ 115 (262)
T 2rcy_A 57 RHCDIIVCAVKPD---------------IAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSEN---KIVWVMPN 115 (262)
T ss_dssp HHCSEEEECSCTT---------------THHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTTS---EEEEEECC
T ss_pred hcCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCCC---cEEEECCC
Confidence 9999999999832 2467788888888544455666777664 3444444310 11 11 12
Q ss_pred CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhH--hHHHHHHHHHHHH
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAA--NAFLAQRISSVNA 232 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--N~~~~~~ia~~nE 232 (480)
.|.....| ..++.++.. .+++..+.++++|+.++ .++...+-....++++.. |.+. ..++..
T Consensus 116 ~p~~~~~g---------~~~~~~~~~--~~~~~~~~~~~ll~~~G--~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~a 179 (262)
T 2rcy_A 116 TPCLVGEG---------SFIYCSNKN--VNSTDKKYVNDIFNSCG--IIHEIKEKDMDIATAISGCGPAYV---YLFIES 179 (262)
T ss_dssp GGGGGTCE---------EEEEEECTT--CCHHHHHHHHHHHHTSE--EEEECCGGGHHHHHHHTTSHHHHH---HHHHHH
T ss_pred hHHHHcCC---------eEEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHccHHHHHHccHHHHH---HHHHHH
Confidence 33332222 123444431 24778999999999985 244444323344455433 4333 455555
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 011641 233 MSALCEATGANVSQVAFAVGT 253 (480)
Q Consensus 233 ~~~l~~~~Gid~~~v~~~~~~ 253 (480)
++..+.+.|++.++..+.+..
T Consensus 180 l~~~~~~~Gl~~~~~~~~~~~ 200 (262)
T 2rcy_A 180 LIDAGVKNGLSRELSKNLVLQ 200 (262)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 666678999999887777753
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=132.14 Aligned_cols=190 Identities=9% Similarity=0.163 Sum_probs=119.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||..+|..|+++ | ++|++||+++++++.+.+. -+++.++++.+++ ++|
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~~~------------------~g~~~~~~~~~~~-~~D 59 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKE------------------LGVETSATLPELH-SDD 59 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCCCC-TTS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEECCCHHHHHHHHHh------------------cCCEEeCCHHHHh-cCC
Confidence 7999999999999999999998 8 9999999999999887652 0245566766777 999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCCCCceEEe-e-CCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQIL-S-NPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~-~-~Pe 157 (480)
+||+||| |. .++++++++.+ + +++|+.. |++++ +.+.+.+.+. ..+.-+ . .|.
T Consensus 60 ~vi~~v~-~~--------------~~~~v~~~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~~---~~~v~~~~~~~~ 115 (263)
T 1yqg_A 60 VLILAVK-PQ--------------DMEAACKNIRT--N-GALVLSVAAGLSV---GTLSRYLGGT---RRIVRVMPNTPG 115 (263)
T ss_dssp EEEECSC-HH--------------HHHHHHTTCCC--T-TCEEEECCTTCCH---HHHHHHTTSC---CCEEEEECCGGG
T ss_pred EEEEEeC-ch--------------hHHHHHHHhcc--C-CCEEEEecCCCCH---HHHHHHcCCC---CcEEEEcCCHHH
Confidence 9999998 42 34556655544 4 7888776 66665 4455554431 122111 1 122
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHhhhh--HhHHHHHHHHHHHHHH
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLA--ANAFLAQRISSVNAMS 234 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~--~N~~~~~~ia~~nE~~ 234 (480)
....|. ..++.|+. .+++..+.++++|+.++ ..++.. +-.-..++-+. .+.+. ..++..+.
T Consensus 116 ~~~~g~--------~~i~~~~~---~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~al~g~~~~~~---~~~~~~l~ 179 (263)
T 1yqg_A 116 KIGLGV--------SGMYAEAE---VSETDRRIADRIMKSVG--LTVWLDDEEKMHGITGISGSGPAYV---FYLLDALQ 179 (263)
T ss_dssp GGTCEE--------EEEECCTT---SCHHHHHHHHHHHHTTE--EEEECSSTTHHHHHHHHTTSHHHHH---HHHHHHHH
T ss_pred HHcCce--------EEEEcCCC---CCHHHHHHHHHHHHhCC--CEEEeCChhhccHHHHHHccHHHHH---HHHHHHHH
Confidence 222221 12333331 24778899999999875 344443 21111122221 22232 33444445
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 011641 235 ALCEATGANVSQVAFAVG 252 (480)
Q Consensus 235 ~l~~~~Gid~~~v~~~~~ 252 (480)
..+++.|++.+++.+.+.
T Consensus 180 e~~~~~G~~~~~~~~~~~ 197 (263)
T 1yqg_A 180 NAAIRQGFDMAEARALSL 197 (263)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 558899999988887764
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-12 Score=132.16 Aligned_cols=219 Identities=16% Similarity=0.116 Sum_probs=131.3
Q ss_pred CcEEEEECCChhHHHHHHHHHH-cCCCCeEEEEE---CCHHHHHH-HHcCCCCC--cCCChHHHHhhhcCCCEE-EecCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIAL-KCPSIEVAVVD---ISVSRINA-WNSDQLPI--YEPGLDGVVKQCRGKNLF-FSTDV 72 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~-~~~G~~V~~~D---~~~~~v~~-l~~~~~~~--~e~~l~~~~~~~~~~~l~-~t~d~ 72 (480)
||||+|||+|+||+.+|..|++ + |++|++|| +++++++. ++++...+ .+++.+.. . ...++. +++|+
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~--G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 76 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD--GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQT-E--VKSRPKVITKDP 76 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST--TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEE-E--EEECCSEEESCH
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccc-e--eeccceEEeCCH
Confidence 5899999999999999999987 5 89999999 88888888 45443111 11111000 0 001233 78899
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCce-E
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF-Q 151 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~ 151 (480)
+++++++|+||+|||++. +.++++++.+.++++++|+.. +...|......+.+.+.....-+ .
T Consensus 77 ~~a~~~aD~Vilav~~~~---------------~~~v~~~l~~~l~~~~ivv~~-~~~~G~~~~~~~~l~~~~~~~v~~~ 140 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFA---------------HEGYFQAMAPYVQDSALIVGL-PSQAGFEFQCRDILGDKAAAVSMMS 140 (404)
T ss_dssp HHHHTTCSEEEECSCGGG---------------HHHHHHHHTTTCCTTCEEEET-TCCTTHHHHHHHHHGGGGGTSEEEE
T ss_pred HHHhCCCCEEEEeCchHH---------------HHHHHHHHHhhCCCCcEEEEc-CCCccHHHHHHHHHHhcCCCeEEEE
Confidence 888899999999998642 467889999999988887753 22235333333445432111101 1
Q ss_pred EeeCCcc---ccccccccccCCCCeEEEecCCC--cchHHHHHHHHHHHhccCCCC-eEEeCCchhHHHh----------
Q 011641 152 ILSNPEF---LAEGTAIQDLFNPDRVLIGGRET--PEGQKAVKALKDVYAHWVPED-RILTTNLWSAELS---------- 215 (480)
Q Consensus 152 v~~~Pe~---~~~G~a~~~~~~~~~vviG~~~~--~~~~~~~e~~~~l~~~~~~~~-~v~~~~~~~ae~~---------- 215 (480)
+...|.. ..||.+........++.+|.... ...++..+.++++|.. . .....|+...++.
T Consensus 141 ~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~di~~~~l~~N~~~~~~~~ 216 (404)
T 3c7a_A 141 FETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAE----PVFRLAKHFLEMLIMSYSFVHPAIL 216 (404)
T ss_dssp ESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSS----SEEEECSCHHHHHHTTCTTHHHHHH
T ss_pred ecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHHhCCC----CceeEcCCEeeeeecCCceeccHHH
Confidence 1123322 34675544444444666675422 2234455556665541 1 1122333211111
Q ss_pred --------h--------hhHh---HHHHHHHHHHHHHHHHHHHh-----CCCH
Q 011641 216 --------K--------LAAN---AFLAQRISSVNAMSALCEAT-----GANV 244 (480)
Q Consensus 216 --------K--------l~~N---~~~~~~ia~~nE~~~l~~~~-----Gid~ 244 (480)
. +..| ..+.+..+++.|+..+++++ |++.
T Consensus 217 l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~ 269 (404)
T 3c7a_A 217 FGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDL 269 (404)
T ss_dssp HHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 1 3343 56678889999999999999 9886
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=123.91 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=106.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||.++|..|+++ |++|++||++++ ++++||
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~~-------------------------------------~~~~aD 59 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKDQ-------------------------------------ATTLGE 59 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCC-------------------------------------CSSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH-------------------------------------HhccCC
Confidence 48999999999999999999998 999999998642 256899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC-CC-cc-------h----HHHHHHHHHhcCCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP-VK-------T----AEAIEKILTHNSKG 147 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~-~g-------t----~~~l~~~l~~~~~g 147 (480)
+||+|+|+ ..++++++++.+.++ +++|+..|+ ++ ++ + .+.+++.+..
T Consensus 60 ~vi~av~~---------------~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~---- 119 (209)
T 2raf_A 60 IVIMAVPY---------------PALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD---- 119 (209)
T ss_dssp EEEECSCH---------------HHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT----
T ss_pred EEEEcCCc---------------HHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC----
Confidence 99999983 235677888888888 888887766 33 12 3 3444444321
Q ss_pred Cce----EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHH
Q 011641 148 IKF----QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF 222 (480)
Q Consensus 148 ~~~----~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~ 222 (480)
..+ ...++|.+..+... + ..+..+++++. +++..+.++++|+.++ ...+..++++.+.++|.+.|..
T Consensus 120 ~~vv~~~~~~~~p~~~~~~~~--g-~~~~~~~~~g~----~~~~~~~v~~ll~~~G-~~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 120 SQVLKAFNTTFAATLQSGQVN--G-KEPTTVLVAGN----DDSAKQRFTRALADSP-LEVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp SEEEECSTTSCHHHHHHSEET--T-TEECEEEEEES----CHHHHHHHHHHTTTSS-CEEEEEESGGGHHHHHHHHHHH
T ss_pred CcEEEeeecccHhhccccccC--C-CCCceeEEcCC----CHHHHHHHHHHHHHcC-CceEeCCCHhHHHHhcchHHHH
Confidence 111 11225655443221 1 01224556765 4688999999999986 2456677899999999887753
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=128.55 Aligned_cols=192 Identities=13% Similarity=0.139 Sum_probs=123.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++.... .+. .....+.+..+++ ..+|
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~-------~g~---------~~~~~~~~~~~~~~~~~D 64 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRHAKTITYYTV-------PHA---------PAQDIVVKGYEDVTNTFD 64 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESSCEEEEEESS-------TTS---------CCEEEEEEEGGGCCSCEE
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeccCcEEEEec-------CCe---------eccceecCchHhcCCCCC
Confidence 8999999999999999999998 8999999998654321110 010 0122333444444 7899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC--CCceEEeeCCcc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~ 158 (480)
+||+|||+. .+.++++.+.+.++++++|+... ...+..+. +..... +. +..+-.+
T Consensus 65 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~~-nGi~~~~~----~~~~~v~~g~---~~~~a~~ 121 (294)
T 3g17_A 65 VIIIAVKTH---------------QLDAVIPHLTYLAHEDTLIILAQ-NGYGQLEH----IPFKNVCQAV---VYISGQK 121 (294)
T ss_dssp EEEECSCGG---------------GHHHHGGGHHHHEEEEEEEEECC-SSCCCGGG----CCCSCEEECE---EEEEEEE
T ss_pred EEEEeCCcc---------------CHHHHHHHHHHhhCCCCEEEEec-cCcccHhh----CCCCcEEEEE---EEEEEEE
Confidence 999999842 25778889999988887766432 22333222 221110 10 1111123
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH-----------------
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA----------------- 221 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~----------------- 221 (480)
..||..... +.++.+|. .+..+.+.++|+.-+ .......|+...+|.|++.|+
T Consensus 122 ~~pg~v~~~---~~~~~~~~------~~~~~~l~~~l~~~~-~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~ 191 (294)
T 3g17_A 122 KGDVVTHFR---DYQLRIQD------NALTRQFRDLVQDSQ-IDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMH 191 (294)
T ss_dssp ETTEEEEEE---EEEEEEEC------SHHHHHHHHHTTTSS-CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGG
T ss_pred cCCCEEEEC---CCEEecCc------cHHHHHHHHHHHhCC-CceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHc
Confidence 445554221 34555542 346778888998754 234456799999999999887
Q ss_pred ---HHHHHHHHHHHHHHHHHHhCCCH
Q 011641 222 ---FLAQRISSVNAMSALCEATGANV 244 (480)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~Gid~ 244 (480)
.+.+....+.|+..++++.|++.
T Consensus 192 ~~~~~~l~~~~~~E~~~va~a~G~~l 217 (294)
T 3g17_A 192 NPEIRILCRQLLLDGCRVAQAEGLNF 217 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555678999999999999863
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=141.64 Aligned_cols=204 Identities=16% Similarity=0.159 Sum_probs=140.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-------hcCCCEEEecCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-------CRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-------~~~~~l~~t~d~~ 73 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.++...+... ..++..... ....+++.+++.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~a--G~~V~l~D~~~~~l~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIIT----FTLEKEASRAHQNGQASAKPKLRFSSSTK 389 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHH----HHHHHHHHHHHTTTCCCCCCCEEEESCGG
T ss_pred ccEEEEEcccHHHHHHHHHHHhC--CCchhcccchHhhhhhHHHHHH----HHHHHHHHhccccchhhhhhhhcccCcHH
Confidence 46899999999999999999998 9999999999987665432100 001111110 1224678899987
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEE-EEecCCCcchHHHHHHHHHhcCC--CCce
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKF 150 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
+ +++||+||.||+.. .+++ +++++++.+++++++|+ .+.||+++.. +...+..... |.+|
T Consensus 390 ~-l~~aDlVIEAV~E~-----------l~iK--~~vf~~le~~~~~~aIlASNTSsl~i~~---ia~~~~~p~r~ig~HF 452 (742)
T 3zwc_A 390 E-LSTVDLVVEAVFED-----------MNLK--KKVFAELSALCKPGAFLCTNTSALNVDD---IASSTDRPQLVIGTHF 452 (742)
T ss_dssp G-GGSCSEEEECCCSC-----------HHHH--HHHHHHHHHHSCTTCEEEECCSSSCHHH---HHTTSSCGGGEEEEEC
T ss_pred H-HhhCCEEEEecccc-----------HHHH--HHHHHHHhhcCCCCceEEecCCcCChHH---HHhhcCCccccccccc
Confidence 6 89999999999853 3444 78999999999999988 4556676543 2211111110 2222
Q ss_pred EEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHHHHH
Q 011641 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
|+|....+- ..||-|.. + ++++++.+..+.+.+++ .++.+.| ...++.| .+...++
T Consensus 453 ---fnP~~~m~L---------VEvi~g~~-T--s~e~~~~~~~~~~~lgK-~pV~vkd-----~pGFi~N---Ri~~~~~ 508 (742)
T 3zwc_A 453 ---FSPAHVMRL---------LEVIPSRY-S--SPTTIATVMSLSKKIGK-IGVVVGN-----CYGFVGN---RMLAPYY 508 (742)
T ss_dssp ---CSSTTTCCE---------EEEEECSS-C--CHHHHHHHHHHHHHTTC-EEEECCC-----STTTTHH---HHHHHHH
T ss_pred ---cCCCCCCce---------EEEecCCC-C--CHHHHHHHHHHHHHhCC-CCcccCC-----CCCccHH---HHhhHHH
Confidence 456544331 13555443 3 78999999999999874 4555543 3357888 5778999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhc
Q 011641 231 NAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 231 nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
+|...+.++ |+++.++.+++.
T Consensus 509 ~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 509 NQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHH
Confidence 999999876 799999998874
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-13 Score=125.29 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=104.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|+||.++|..|+++ |++|++ +|+++++++.+.+.. +....+++ .++++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~--g~~V~~v~~r~~~~~~~l~~~~-----------------g~~~~~~~-~~~~~~a 82 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA--QIPAIIANSRGPASLSSVTDRF-----------------GASVKAVE-LKDALQA 82 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT--TCCEEEECTTCGGGGHHHHHHH-----------------TTTEEECC-HHHHTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCCHHHHHHHHHHh-----------------CCCcccCh-HHHHhcC
Confidence 57999999999999999999998 999999 999999888876420 11122334 4458999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc-------------hHHHHHHHHHhcCC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-------------TAEAIEKILTHNSK 146 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-------------t~~~l~~~l~~~~~ 146 (480)
|+||+|||.. .+.++++++.+ + ++++|+..++ +.+ +.+.+++.+...
T Consensus 83 DvVilavp~~---------------~~~~v~~~l~~-~-~~~ivi~~~~-g~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 142 (220)
T 4huj_A 83 DVVILAVPYD---------------SIADIVTQVSD-W-GGQIVVDASN-AIDFPAFKPRDLGGRLSTEIVSELVPGA-- 142 (220)
T ss_dssp SEEEEESCGG---------------GHHHHHTTCSC-C-TTCEEEECCC-CBCTTTCCBCCCTTCCHHHHHHHHSTTC--
T ss_pred CEEEEeCChH---------------HHHHHHHHhhc-c-CCCEEEEcCC-CCCcccccccccCCCcHHHHHHHHCCCC--
Confidence 9999999732 24667777766 4 4777766543 222 455666555421
Q ss_pred CCceEEee--CCc-cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH
Q 011641 147 GIKFQILS--NPE-FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL 214 (480)
Q Consensus 147 g~~~~v~~--~Pe-~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.+.-++ .|. ....|..... .+..+++++. ++++.+.++++|+.++ ..++..++++.|.+
T Consensus 143 --~vv~~~~~~~~~v~~~g~~~~~--~~~~v~~~g~----~~~~~~~v~~l~~~~G-~~~~~~G~l~~a~~ 204 (220)
T 4huj_A 143 --KVVKAFNTLPAAVLAADPDKGT--GSRVLFLSGN----HSDANRQVAELISSLG-FAPVDLGTLAASGP 204 (220)
T ss_dssp --EEEEESCSSCHHHHTSCSBCSS--CEEEEEEEES----CHHHHHHHHHHHHHTT-CEEEECCSHHHHHH
T ss_pred --CEEECCCCCCHHHhhhCcccCC--CCeeEEEeCC----CHHHHHHHHHHHHHhC-CCeEeeCChhhcch
Confidence 111111 111 1111211111 1234556665 4789999999999986 34566677766644
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=113.91 Aligned_cols=172 Identities=16% Similarity=0.072 Sum_probs=105.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||..+|..|++. |++|+++|+++++.+.+.+. +++.+ +.+++++++|
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~-------------------g~~~~-~~~~~~~~~D 85 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGS--GFKVVVGSRNPKRTARLFPS-------------------AAQVT-FQEEAVSSPE 85 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHSBT-------------------TSEEE-EHHHHTTSCS
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCcee-cHHHHHhCCC
Confidence 47899999999999999999998 89999999999988877542 13334 6677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc-chHH---HHHHHHHhcCCCCceEEeeCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV-KTAE---AIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~-gt~~---~l~~~l~~~~~g~~~~v~~~P 156 (480)
+||+|+|.. .. ..+++ +.+.+ ++++|+..|+..+ .+.+ ...+.+.+..++..+.-.+++
T Consensus 86 vVi~av~~~-~~--------------~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~ 148 (215)
T 2vns_A 86 VIFVAVFRE-HY--------------SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNV 148 (215)
T ss_dssp EEEECSCGG-GS--------------GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTT
T ss_pred EEEECCChH-HH--------------HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEecccc
Confidence 999999842 11 12222 44445 6788887766533 2111 112233332111111111222
Q ss_pred ccc---cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHh
Q 011641 157 EFL---AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAAN 220 (480)
Q Consensus 157 e~~---~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N 220 (480)
... .++.. . .....++.|+ +++..+.++++|+.++. ..+..++++.|..++.+.+
T Consensus 149 ~~~~~~~~~~~-~--g~~~~~~~g~-----~~~~~~~v~~ll~~~G~-~~~~~g~~~~~~~~e~~~~ 206 (215)
T 2vns_A 149 ISAWTLQAGPR-D--GNRQVPICGD-----QPEAKRAVSEMALAMGF-MPVDMGSLASAWEVEAMPL 206 (215)
T ss_dssp BCHHHHHTCSC-S--SCCEEEEEES-----CHHHHHHHHHHHHHTTC-EEEECCSGGGHHHHHHSCC
T ss_pred ccHhHhccccc-C--CceeEEEecC-----CHHHHHHHHHHHHHcCC-ceEeecchhhhhHhhhhhh
Confidence 111 12211 1 1112344443 37889999999999863 4566678888877764433
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=122.43 Aligned_cols=195 Identities=16% Similarity=0.132 Sum_probs=117.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.|||+|||+|.||.++|..|++. |++|+++|+++++ .+...+. ++..+ ++++++++|
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~--G~~V~~~~~~~~~~~~~a~~~-------------------G~~~~-~~~e~~~~a 73 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEAH-------------------GLKVA-DVKTAVAAA 73 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHHT-------------------TCEEE-CHHHHHHTC
T ss_pred CCEEEEECchHHHHHHHHHHHHC--cCEEEEEECChHHHHHHHHHC-------------------CCEEc-cHHHHHhcC
Confidence 37899999999999999999998 8999999998765 3333321 23445 777888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC-C-CCceEEeeCC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K-GIKFQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~-g~~~~v~~~P 156 (480)
|+||+|||.. ...++++ ++.+.++++++|++.+++ ... ++... . +.+| +..+|
T Consensus 74 DvVilavp~~---------------~~~~v~~~~i~~~l~~~~ivi~~~gv----~~~----~~~~~~~~~~~v-v~~~P 129 (338)
T 1np3_A 74 DVVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHGF----SIH----YNQVVPRADLDV-IMIAP 129 (338)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCCH----HHH----TTSSCCCTTCEE-EEEEE
T ss_pred CEEEEeCCcH---------------HHHHHHHHHHHhhCCCCCEEEEcCCc----hhH----HHhhcCCCCcEE-EeccC
Confidence 9999999842 2356777 888899999988865432 111 11111 1 2333 34456
Q ss_pred ccccccccccccC----CCCeEEE-ecCCCcchHHHHHHHHHHHhccCCCCe--EEeCCch-hHHHhhhhHhH-HHHHHH
Q 011641 157 EFLAEGTAIQDLF----NPDRVLI-GGRETPEGQKAVKALKDVYAHWVPEDR--ILTTNLW-SAELSKLAANA-FLAQRI 227 (480)
Q Consensus 157 e~~~~G~a~~~~~----~~~~vvi-G~~~~~~~~~~~e~~~~l~~~~~~~~~--v~~~~~~-~ae~~Kl~~N~-~~~~~i 227 (480)
..|+.+...++ ..+.++. +.. .++++.+.+.++++.++. .+ +..++.. ..+...+.+++ +....-
T Consensus 130 --~gp~~a~~~l~~~G~g~~~ii~~~~~---~~~~a~~~~~~l~~~lG~-~~agv~~~~~~~~~~~~~~~s~~~l~G~lp 203 (338)
T 1np3_A 130 --KAPGHTVRSEFVKGGGIPDLIAIYQD---ASGNAKNVALSYACGVGG-GRTGIIETTFKDETETDLFGEQAVLCGGCV 203 (338)
T ss_dssp --SSCSHHHHHHHHTTCCCCEEEEEEEC---SSSCHHHHHHHHHHHTTH-HHHCEEECCHHHHHHHHHHHHHHTTTHHHH
T ss_pred --CCCchhHHHHHhccCCCeEEEEecCC---CCHHHHHHHHHHHHHcCC-CccceEeechhcccchHHHHHHHHHhhhHH
Confidence 34554433322 2223322 221 135678889999998852 13 5555543 44555555541 111122
Q ss_pred HHHHHHHHHHHHhCCCHHHH
Q 011641 228 SSVNAMSALCEATGANVSQV 247 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v 247 (480)
+++........+.|+++++.
T Consensus 204 ~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 204 ELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 23333333334678876543
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=120.76 Aligned_cols=203 Identities=15% Similarity=0.098 Sum_probs=118.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||+.+|..|+ + |++|++|++++++++.+++.+..+..++.. .. ..+..+ .++...+|
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~-~~-----~~~~~~---~~~~~~~D 69 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRRQEQAAAIQSEGIRLYKGGEE-FR-----ADCSAD---TSINSDFD 69 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHCEEEEETTEE-EE-----ECCEEE---SSCCSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHh-c--CCceEEEECCHHHHHHHHhCCceEecCCCe-ec-----cccccc---ccccCCCC
Confidence 389999999999999999999 8 999999999999998887643222211110 00 011221 12467899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEee-CCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS-NPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~ 159 (480)
+||+|||+. .+.++++.+.+. .+++ |+. -....+..+.+.+.+.... .-..+.+ +-.+.
T Consensus 70 ~vilavK~~---------------~~~~~l~~l~~~-~~~~-ivs-~~nGi~~~e~l~~~~~~~~--vl~g~~~~~a~~~ 129 (307)
T 3ego_A 70 LLVVTVKQH---------------QLQSVFSSLERI-GKTN-ILF-LQNGMGHIHDLKDWHVGHS--IYVGIVEHGAVRK 129 (307)
T ss_dssp EEEECCCGG---------------GHHHHHHHTTSS-CCCE-EEE-CCSSSHHHHHHHTCCCSCE--EEEEEECCEEEEC
T ss_pred EEEEEeCHH---------------HHHHHHHHhhcC-CCCe-EEE-ecCCccHHHHHHHhCCCCc--EEEEEEeeceEEC
Confidence 999999842 246777777764 5555 432 2333343333332222110 0011222 22344
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhH------------------
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------ 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------ 221 (480)
.||...+... .++.+|..+.. .+..+.+.++|...+ .......|+....|.|++-|+
T Consensus 130 ~pg~v~~~~~--g~~~iG~~~~~--~~~~~~l~~~l~~ag-~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 204 (307)
T 3ego_A 130 SDTAVDHTGL--GAIKWSAFDDA--EPDRLNILFQHNHSD-FPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLT 204 (307)
T ss_dssp SSSEEEEEEC--CCEEEEECTTC--CGGGGTTTTSSCCTT-SCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CCCEEEEeee--eeEEEEeCCCC--cHHHHHHHHHhhhCC-CCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhc
Confidence 5676544332 35678875322 122333334444322 123455799999999999986
Q ss_pred ---HHHHHHHHHHHHHHHHHHh
Q 011641 222 ---FLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~ 240 (480)
.+.+....+.|+..+++..
T Consensus 205 ~~~~~~l~~~l~~E~~~va~~~ 226 (307)
T 3ego_A 205 TPAYLAFMKLVFQEACRILKLE 226 (307)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCS
T ss_pred ChhHHHHHHHHHHHHHHHHhcc
Confidence 2445567788888887654
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=8e-12 Score=121.87 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=105.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ++| .+||+++++.+.+.+.. +. .+++++++++++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~~-----------------g~--~~~~~~~~~~~~ 59 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEVY-----------------GG--KAATLEKHPELN 59 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHT-----------------CC--CCCSSCCCCC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHHc-----------------CC--ccCCHHHHHhcC
Confidence 47999999999999999999864 688 59999999988776410 11 345566667889
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||... +.++++++. +++++|+..|+..+... +++. +.....|...
T Consensus 60 DvVilav~~~~---------------~~~v~~~l~---~~~~ivi~~s~~~~~~~------l~~~-----~~~~~~p~~~ 110 (276)
T 2i76_A 60 GVVFVIVPDRY---------------IKTVANHLN---LGDAVLVHCSGFLSSEI------FKKS-----GRASIHPNFS 110 (276)
T ss_dssp -CEEECSCTTT---------------HHHHHTTTC---CSSCCEEECCSSSCGGG------GCSS-----SEEEEEECSC
T ss_pred CEEEEeCChHH---------------HHHHHHHhc---cCCCEEEECCCCCcHHH------HHHh-----hccccchhhh
Confidence 99999998531 244555443 56788887775433221 1111 1122333332
Q ss_pred ccc--ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchh---HHHhhhhHhHHHHHHHHHHHHHH
Q 011641 160 AEG--TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS---AELSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G--~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~---ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.+| .....+...+ +++++. ++..+.++++++.++. .++....... ....+++.|... .+++|+.
T Consensus 111 ~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~l~~~lG~-~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~ 179 (276)
T 2i76_A 111 FSSLEKALEMKDQIV-FGLEGD-----ERGLPIVKKIAEEISG-KYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSK 179 (276)
T ss_dssp C--CTTGGGCGGGCC-EEECCC-----TTTHHHHHHHHHHHCS-CEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHH
T ss_pred cCCCchhHHHhCCCe-EEEEeC-----hHHHHHHHHHHHHhCC-CEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 222 1111122222 344554 3458889999999863 3444432221 233477777332 3557777
Q ss_pred HHHHHhCCCHH
Q 011641 235 ALCEATGANVS 245 (480)
Q Consensus 235 ~l~~~~Gid~~ 245 (480)
.++++.|++..
T Consensus 180 ~~~~~~Gl~~~ 190 (276)
T 2i76_A 180 RIYTLLGLDEP 190 (276)
T ss_dssp HHHHTTTCSCH
T ss_pred HHHHHcCCChH
Confidence 89999999876
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=116.88 Aligned_cols=134 Identities=14% Similarity=0.201 Sum_probs=95.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|+.. |++|++||+++++.+...+. ++..+ ++++++++||+
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~-------------------g~~~~-~l~e~l~~aDv 213 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPF--GVQRFLYTGRQPRPEEAAEF-------------------QAEFV-STPELAAQSDF 213 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCCEEEEESSSCCHHHHHTT-------------------TCEEC-CHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcchhHHHhc-------------------CceeC-CHHHHHhhCCE
Confidence 6899999999999999999987 99999999987655544321 23444 77888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC---CCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|.+....+ ..+ +.+.+.++++.++|+.|+.++..++.+.+.+++... +.++ +.||.
T Consensus 214 Vi~~vp~~~~t~~-----~i~--------~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~ep 277 (330)
T 2gcg_A 214 IVVACSLTPATEG-----LCN--------KDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV---TSPEP 277 (330)
T ss_dssp EEECCCCCTTTTT-----CBS--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred EEEeCCCChHHHH-----hhC--------HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCC---CCCCC
Confidence 9999986532211 111 345567889999999999988888888888876431 2333 57776
Q ss_pred ccccccccccCCCCeEEE
Q 011641 159 LAEGTAIQDLFNPDRVLI 176 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vvi 176 (480)
..+++.+ +..+.+++
T Consensus 278 l~~~~~l---~~~~nvi~ 292 (330)
T 2gcg_A 278 LPTNHPL---LTLKNCVI 292 (330)
T ss_dssp CCTTCGG---GGCTTEEE
T ss_pred CCCCChh---hcCCCEEE
Confidence 5555443 34455665
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-11 Score=117.87 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=93.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|+.. |++|++||++++. +...+. ++.. +++++++++||+
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~~~l~~aDv 207 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGF--NMRILYYSRTRKE-EVEREL-------------------NAEF-KPLEDLLRESDF 207 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHH-------------------CCEE-CCHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHhC--CCEEEEECCCcch-hhHhhc-------------------Cccc-CCHHHHHhhCCE
Confidence 6899999999999999999987 9999999998876 333210 1233 477888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC---CCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|.+.... .+. .+.+.+.+++++++|+.|+.++...+.+.+.+++... +.|+ +.||.
T Consensus 208 Vil~vp~~~~t~-----------~~i--~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~EP 271 (334)
T 2dbq_A 208 VVLAVPLTRETY-----------HLI--NEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV---FEEEP 271 (334)
T ss_dssp EEECCCCCTTTT-----------TCB--CHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred EEECCCCChHHH-----------Hhh--CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecC---CCCCC
Confidence 999998754221 111 1345667889999999999888888888888876321 2332 56663
Q ss_pred ccccccccccCCCCeEEE
Q 011641 159 LAEGTAIQDLFNPDRVLI 176 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vvi 176 (480)
.+...++..+++++
T Consensus 272 ----~~~~~L~~~~~vi~ 285 (334)
T 2dbq_A 272 ----YYNEELFKLDNVVL 285 (334)
T ss_dssp ----CCCHHHHHCTTEEE
T ss_pred ----CCCchhhcCCCEEE
Confidence 23345555666766
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-10 Score=104.08 Aligned_cols=155 Identities=9% Similarity=0.047 Sum_probs=100.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||.+||..|.++ ||+|++||+. ++ +++||
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~--G~~V~~~~~~-------------------------------------~~-~~~aD 45 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSV--GHYVTVLHAP-------------------------------------ED-IRDFE 45 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHT--TCEEEECSSG-------------------------------------GG-GGGCS
T ss_pred CcEEEEEeeCHHHHHHHHHHHHC--CCEEEEecCH-------------------------------------HH-hccCC
Confidence 38999999999999999999998 9999999872 11 46788
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-CcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||.. .+.++++++.+.++++++|++.|+. +....+.+ ...+ . .++..+|-+.
T Consensus 46 --ilavP~~---------------ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~----~~~g--~-~fvg~HPm~g 101 (232)
T 3dfu_A 46 --LVVIDAH---------------GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPL----ETSG--G-IVMSAHPIGQ 101 (232)
T ss_dssp --EEEECSS---------------CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHH----HHTT--C-EEEEEEEEET
T ss_pred --EEEEcHH---------------HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHH----HhCC--C-cEEEeeeCCC
Confidence 9998853 2577889999999999999987543 33322222 2222 2 3566677642
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhh-hHhHHHHHHHHHHHHHHHHHH
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL-AANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl-~~N~~~~~~ia~~nE~~~l~~ 238 (480)
. +.++.++ +++..+.++++++.++ ..+..++.+. -.++ +.-...-..++++++..++.+
T Consensus 102 ~-----------~~~i~a~-----d~~a~~~l~~L~~~lG--~~vv~~~~~~--hd~~~AAvsh~nhLv~L~~~A~~ll~ 161 (232)
T 3dfu_A 102 D-----------RWVASAL-----DELGETIVGLLVGELG--GSIVEIADDK--RAQLAAALTYAGFLSTLQRDASYFLD 161 (232)
T ss_dssp T-----------EEEEEES-----SHHHHHHHHHHHHHTT--CEECCCCGGG--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----------ceeeeCC-----CHHHHHHHHHHHHHhC--CEEEEeCHHH--HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1344443 3778999999999986 3555555432 2222 111112233455566666653
Q ss_pred H
Q 011641 239 A 239 (480)
Q Consensus 239 ~ 239 (480)
+
T Consensus 162 ~ 162 (232)
T 3dfu_A 162 E 162 (232)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-10 Score=113.41 Aligned_cols=122 Identities=23% Similarity=0.238 Sum_probs=86.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||.++|..|+.+..|++|++||+++++++.+...... .... .....++++++|+++ +++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~----~~~~---~~~~~~i~~t~d~~~-l~~aDv 72 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE----SGPV---GLFDTKVTGSNDYAD-TANSDI 72 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHT----THHH---HTCCCEEEEESCGGG-GTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHh----hhhc---ccCCcEEEECCCHHH-HCCCCE
Confidence 79999999999999999999852379999999999888765421000 0000 001245788889876 999999
Q ss_pred EEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+|+|+|...++ .+.|+ +.++++.+.+.++.+ +.+|++ -|+|+++...+
T Consensus 73 Viiav~~p~~~g~----~r~dl~~~n~~i~~~i~~~i~~~~~-~~~viv-~tNP~~~~~~~ 127 (310)
T 1guz_A 73 VIITAGLPRKPGM----TREDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIMTHV 127 (310)
T ss_dssp EEECCSCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHHHHH
T ss_pred EEEeCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEE-EcCchHHHHHH
Confidence 9999999865421 13454 666788888888864 554444 37898886443
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-12 Score=117.47 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=100.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|++. |++|++||++++ .+.+... +++.+ +..++++.+|+
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~-~~~~~~~-------------------g~~~~-~~~~~~~~aDv 76 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQC--GYSVVFGSRNPQ-VSSLLPR-------------------GAEVL-CYSEAASRSDV 76 (201)
Confidence 7899999999999999999988 899999999876 4333210 12333 55667889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc------chHHHHHHHHHhcCCCCceEEeeC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV------KTAEAIEKILTHNSKGIKFQILSN 155 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~------gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
||+|||... ++.++ ++.+ +.++++||+.++..+ +..+.+.+.+..... .. .+...
T Consensus 77 Vilav~~~~---------------~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~v-vr-a~~n~ 137 (201)
T 2yjz_A 77 IVLAVHREH---------------YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHV-VK-AFNTI 137 (201)
Confidence 999998531 12233 3433 345778887766543 223334333322110 00 00111
Q ss_pred Cc-cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhh
Q 011641 156 PE-FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA 218 (480)
Q Consensus 156 Pe-~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~ 218 (480)
|. ...+|.. . .....++.|++ ++..+.++++|+.++. ..+..++++.+.+.|.+
T Consensus 138 ~a~~~~~g~l-~--g~~~~~~~g~~-----~~~~~~v~~ll~~~G~-~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 138 SAWALQSGTL-D--ASRQVFVCGND-----SKAKDRVMDIARTLGL-TPLDQGSLVAAKEIENY 192 (201)
Confidence 11 1222321 1 01113455543 6788899999999873 45667788888888754
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=116.02 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=81.7
Q ss_pred cEEEEECCChhHHHHHHHHH-HcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+. .. |++|++||++++..+...+. ++..++++++.++.||
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~--G~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~l~ell~~aD 222 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGL--GMKLVYYDVAPADAETEKAL-------------------GAERVDSLEELARRSD 222 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHH-------------------TCEECSSHHHHHHHCS
T ss_pred CEEEEEEECHHHHHHHHHHHHhc--CCEEEEECCCCcchhhHhhc-------------------CcEEeCCHHHHhccCC
Confidence 68999999999999999998 76 99999999987654433210 2344567888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|..... ..+. .+.+.+.+++++++|+.|+.++...+.+.+.|++.
T Consensus 223 vVil~vp~~~~t-----------~~li--~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~ 273 (348)
T 2w2k_A 223 CVSVSVPYMKLT-----------HHLI--DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273 (348)
T ss_dssp EEEECCCCSGGG-----------TTCB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEEeCCCChHH-----------HHHh--hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhC
Confidence 999999864321 1111 12445678899999999998888888888888763
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=108.89 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=86.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|+||.++|..|+.+ |+ +|++||+++++++..... +...... ....++++++|+++++++|
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~~ea~~~a 79 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA 79 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECChhHHHHHHHH--------HHhhhhccCCCCEEEEeCCHHHHhCCC
Confidence 7999999999999999999998 88 999999999887763211 1111111 1235688899998789999
Q ss_pred cEEEEeccCCCCCCCC-CCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 80 DIVFVSVNTPTKTQGL-GAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 80 DvVii~Vptp~~~~~~-~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
|+||+++++|.....- .+....| ...++++++.|.++. ++.++++ .|+|.++...+
T Consensus 80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNP~~~~t~~ 141 (331)
T 1pzg_A 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIV-VTNPLDCMVKV 141 (331)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CCSSHHHHHHH
T ss_pred CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-EcCchHHHHHH
Confidence 9999999777543100 0001334 244678888888887 5666554 68888876443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-10 Score=109.75 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=81.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..+... |++|++||++++..+ .....++++++++.||+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------~~~~~~~l~ell~~aDi 176 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAF--GMRVIAYTRSSVDQN------------------------VDVISESPADLFRQSDF 176 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSCCCTT------------------------CSEECSSHHHHHHHCSE
T ss_pred chheeeccCchhHHHHHHHHhh--CcEEEEEeccccccc------------------------cccccCChHHHhhccCe
Confidence 6899999999999999999988 999999999754211 12445688888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++|+|......+ .. -+...+.++++.++|+.|+.++-..+.+.+.|++..
T Consensus 177 V~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~ 227 (290)
T 3gvx_A 177 VLIAIPLTDKTRG-----MV--------NSRLLANARKNLTIVNVARADVVSKPDMIGFLKERS 227 (290)
T ss_dssp EEECCCCCTTTTT-----CB--------SHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred EEEEeeccccchh-----hh--------hHHHHhhhhcCceEEEeehhcccCCcchhhhhhhcc
Confidence 9999984322110 11 145667889999999999988888888888887643
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-09 Score=106.61 Aligned_cols=122 Identities=19% Similarity=0.211 Sum_probs=84.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|+||.++|..|+.+ |+ +|+++|+++++++..... +...... ....+++.++|+ +++++|
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a 73 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTY-DDLAGA 73 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence 7999999999999999999998 77 899999999887754321 1111111 123568888998 679999
Q ss_pred cEEEEeccCCCCCCCCC-CCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 80 DIVFVSVNTPTKTQGLG-AGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~-~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||+++++|...+..+ +....|+ ..++++++.|.++. ++.++++ -|.|.++...
T Consensus 74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNP~~~~t~ 134 (322)
T 1t2d_A 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIV-VTNPVDVMVQ 134 (322)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-CSSSHHHHHH
T ss_pred CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-ecCChHHHHH
Confidence 99999998776431100 0002333 45677888888887 5666655 3778877543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=108.85 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=78.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||++++..+ .....+++++++++||+
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------g~~~~~~l~ell~~aDv 218 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAF--DCPISYFSRSKKPNT------------------------NYTYYGSVVELASNSDI 218 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCCTTC------------------------CSEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCchhcc------------------------CceecCCHHHHHhcCCE
Confidence 6899999999999999999987 999999999764310 12345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..+ +++.+.+++++++|+.|+..+-.++.+.+.|++.
T Consensus 219 Vil~vP~~~~t~~-----li~--------~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g 268 (333)
T 3ba1_A 219 LVVACPLTPETTH-----IIN--------REVIDALGPKGVLINIGRGPHVDEPELVSALVEG 268 (333)
T ss_dssp EEECSCCCGGGTT-----CBC--------HHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCChHHHH-----Hhh--------HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 9999986321100 111 2344567889999999988888888888888764
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-09 Score=104.91 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=83.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +...... ....++++++|+ +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK--DLGDVYMFDIIEGVPQGKALD--------LNHCMALIGSPAKIFGENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHH--------HHhHhhccCCCCEEEECCCH-HHHCCC
Confidence 6899999999999999999998 88 999999999888753211 1111111 123568888998 679999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+||+++++|..... ...|+ ..++++++++.++. ++.++++- |.|.++..
T Consensus 84 D~VI~avg~p~k~g~----tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~~~~t 138 (328)
T 2hjr_A 84 DVVIITAGVPRKPNM----TRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI-TNPLDAMV 138 (328)
T ss_dssp SEEEECCSCCCCTTC----CSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHH
T ss_pred CEEEEcCCCCCCCCC----chhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe-cCchHHHH
Confidence 999999987764311 12344 44677888888887 56666553 66776643
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-09 Score=104.75 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=80.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~ 77 (480)
||||+|||+|.||.++|..|+.+ | ++|++||+++++++.+.... ..... ......++ ++|+ ++++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~--g~~~~V~l~d~~~~~~~~~~~~l--------~~~~~-~~~~~~~~~~~d~-~~~~ 68 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ--GVADDYVFIDANEAKVKADQIDF--------QDAMA-NLEAHGNIVINDW-AALA 68 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHH--------HHHGG-GSSSCCEEEESCG-GGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEcCCHHHHHHHHHHH--------Hhhhh-hcCCCeEEEeCCH-HHhC
Confidence 79999999999999999999998 7 89999999999887765310 00000 00112343 5777 6689
Q ss_pred cCcEEEEeccCCCC----CCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 78 EADIVFVSVNTPTK----TQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~----~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+||+|+|+|.. ... .+. +...+.++++.+.++.+ +.+|++ .|.|.++...
T Consensus 69 ~aDvViiav~~~~~~~~~~g~----~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~-~tNp~~~~~~ 130 (309)
T 1hyh_A 69 DADVVISTLGNIKLQQDNPTG----DRFAELKFTSSMVQSVGTNLKESGF-HGVLVV-ISNPVDVITA 130 (309)
T ss_dssp TCSEEEECCSCGGGTC-----------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred CCCEEEEecCCcccCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE-EcCcHHHHHH
Confidence 99999999997642 100 011 23345777888887764 666655 6788877443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=105.76 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=81.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++........ +++..++++++++.||+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDi 218 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAF--GMNVLVWGRENSKERARAD--------------------GFAVAESKDALFEQSDV 218 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSHHHHHHHHHT--------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHhc--------------------CceEeCCHHHHHhhCCE
Confidence 5899999999999999999987 9999999998643222221 24556688898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++++|......+ .. -+...+.++++.++|+.|+.++-..+.+.+.|++..
T Consensus 219 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 269 (352)
T 3gg9_A 219 LSVHLRLNDETRS-----II--------TVADLTRMKPTALFVNTSRAELVEENGMVTALNRGR 269 (352)
T ss_dssp EEECCCCSTTTTT-----CB--------CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTS
T ss_pred EEEeccCcHHHHH-----hh--------CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCC
Confidence 9999984322111 11 134567889999999999887777777888887643
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-09 Score=106.80 Aligned_cols=132 Identities=11% Similarity=0.142 Sum_probs=89.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..++.. |++|++||++++. +...+ .++..+ ++++++++||+
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~-~l~e~l~~aDi 203 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPF--GVKLYYWSRHRKV-NVEKE-------------------LKARYM-DIDELLEKSDI 203 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCH-HHHHH-------------------HTEEEC-CHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcch-hhhhh-------------------cCceec-CHHHHHhhCCE
Confidence 6899999999999999999987 9999999998775 32211 023443 77888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC---CCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK---GIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|..... ..+. -+.+.+.++++ ++++.|+..+-..+.+.+.+++... +.|+ +.||.
T Consensus 204 Vil~vp~~~~t-----------~~~i--~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv---~~~EP 266 (333)
T 2d0i_A 204 VILALPLTRDT-----------YHII--NEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDV---FEKEP 266 (333)
T ss_dssp EEECCCCCTTT-----------TTSB--CHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESC---CSSSS
T ss_pred EEEcCCCChHH-----------HHHh--CHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecC---CCCCC
Confidence 99999865221 1111 12344567888 9999998887777778777776321 2332 46554
Q ss_pred ccccccccccCCCC-eEEEe
Q 011641 159 LAEGTAIQDLFNPD-RVLIG 177 (480)
Q Consensus 159 ~~~G~a~~~~~~~~-~vviG 177 (480)
.. . +.++..+ .+++.
T Consensus 267 ~~-~---~~L~~~~~nvilt 282 (333)
T 2d0i_A 267 VR-E---HELFKYEWETVLT 282 (333)
T ss_dssp CS-C---CGGGGCTTTEEEC
T ss_pred CC-C---chHHcCCCCEEEc
Confidence 32 2 3455555 66654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-09 Score=103.89 Aligned_cols=120 Identities=20% Similarity=0.279 Sum_probs=80.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHh-hhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|+||.++|..|+.+ |+ +|.++|+++++++..... +.+... .....++++++|+ +++++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~--g~~~v~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~ 70 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALD--------LYEASPIEGFDVRVTGTNNY-ADTAN 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCccHHHHHHHh--------HHHhHhhcCCCeEEEECCCH-HHHCC
Confidence 37999999999999999999988 76 899999999877643321 111100 0113467888898 66999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+||+++++|..... .+.|+ ..++++++.+.++. ++.+|++ .|+|.++...+
T Consensus 71 aD~Vi~a~g~p~~~g~----~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNPv~~~t~~ 128 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGM----SREDLIKVNADITRACISQAAPLS-PNAVIIM-VNNPLDAMTYL 128 (309)
T ss_dssp CSEEEECCCC------------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEE-CCSSHHHHHHH
T ss_pred CCEEEEcCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-cCCchHHHHHH
Confidence 9999999998865411 12333 44556677777775 5666655 58898876443
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-09 Score=104.26 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=78.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC-CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+... |++|++||+ +++....... +....++++++++.||
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~l~ell~~aD 204 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEASY--------------------QATFHDSLDSLLSVSQ 204 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHHH--------------------TCEECSSHHHHHHHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcChhhhhhc--------------------CcEEcCCHHHHHhhCC
Confidence 6899999999999999999977 999999999 7765322111 1344557888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|......+ ..+ +...+.++++.++|+.|+..+-..+.+.+.+++.
T Consensus 205 vVil~~p~~~~t~~-----~i~--------~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g 255 (320)
T 1gdh_A 205 FFSLNAPSTPETRY-----FFN--------KATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 255 (320)
T ss_dssp EEEECCCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEEeccCchHHHh-----hcC--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999985321100 111 3455778999999998887665667777777764
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-09 Score=104.39 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=79.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.......| ... .++++.++.||+
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~g--------------------~~~-~~l~ell~~aDv 199 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAM--GMKVLAYDILDIREKAEKIN--------------------AKA-VSLEELLKNSDV 199 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHTT--------------------CEE-CCHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCcchhHHHhcC--------------------cee-cCHHHHHhhCCE
Confidence 6899999999999999999987 99999999987664321111 233 377888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 200 Vvl~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 249 (313)
T 2ekl_A 200 ISLHVTVSKDAKP-----IID--------YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG 249 (313)
T ss_dssp EEECCCCCTTSCC-----SBC--------HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT
T ss_pred EEEeccCChHHHH-----hhC--------HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 9999985432111 111 3345678899999999987776677788888764
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=101.01 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=78.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++. +...+. +++. .++++.++.||+
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~ell~~aDv 199 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANAL--GMNILLYDPYPNE-ERAKEV-------------------NGKF-VDLETLLKESDV 199 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHT-------------------TCEE-CCHHHHHHHCSE
T ss_pred ceEEEEccCHHHHHHHHHHHHC--CCEEEEECCCCCh-hhHhhc-------------------Cccc-cCHHHHHhhCCE
Confidence 5899999999999999999987 9999999998765 222211 1233 367788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 200 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g 249 (307)
T 1wwk_A 200 VTIHVPLVESTYH-----LIN--------EERLKLMKKTAILINTSRGPVVDTNALVKALKEG 249 (307)
T ss_dssp EEECCCCSTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCChHHhh-----hcC--------HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999985322100 111 2345678899999999887666667787778764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-09 Score=106.49 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=81.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||+++...+...+. ++...+++++.++.||+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~l~ell~~aDv 223 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPF--GCNLLYHDRLQMAPELEKET-------------------GAKFVEDLNEMLPKCDV 223 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--CCEEEEECSSCCCHHHHHHH-------------------CCEECSCHHHHGGGCSE
T ss_pred CEEeEEEeCHHHHHHHHHHHHC--CCEEEEeCCCccCHHHHHhC-------------------CCeEcCCHHHHHhcCCE
Confidence 6899999999999999999987 99999999975433332220 23455688899999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ ..+ +...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 224 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 273 (351)
T 3jtm_A 224 IVINMPLTEKTRG-----MFN--------KELIGKLKKGVLIVNNARGAIMERQAVVDAVESG 273 (351)
T ss_dssp EEECSCCCTTTTT-----CBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEECCCCCHHHHH-----hhc--------HHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhC
Confidence 9999984322111 111 3455678999999999988777778888888764
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=101.95 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=79.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++...+... ..+...++++.++.||+
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~---------------------g~~~~~~l~ell~~sDv 230 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGF--GLAIHYHNRTRLSHALEE---------------------GAIYHDTLDSLLGASDI 230 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHT---------------------TCEECSSHHHHHHTCSE
T ss_pred CEEEEEEeChhHHHHHHHHHHC--CCEEEEECCCCcchhhhc---------------------CCeEeCCHHHHHhhCCE
Confidence 5899999999999999999976 999999999753322211 13455688898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ .. -+...+.++++.++|+.|..+.-..+.+.+.|++.
T Consensus 231 V~l~~Plt~~T~~-----li--------~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 280 (345)
T 4g2n_A 231 FLIAAPGRPELKG-----FL--------DHDRIAKIPEGAVVINISRGDLINDDALIEALRSK 280 (345)
T ss_dssp EEECSCCCGGGTT-----CB--------CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 9999985322111 11 13455678999999999988777777788888764
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=106.03 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=79.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++..+.+ .......++++.+++||+
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv 194 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASAL--GMHVIGVNTTGHPADHF---------------------HETVAFTATADALATANF 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCCCCTTC---------------------SEEEEGGGCHHHHHHCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCEEEEECCCcchhHhH---------------------hhccccCCHHHHHhhCCE
Confidence 5899999999999999999987 99999999975432111 011223567788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ .. -+.....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 195 V~l~lPlt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 244 (324)
T 3evt_A 195 IVNALPLTPTTHH-----LF--------STELFQQTKQQPMLINIGRGPAVDTTALMTALDHH 244 (324)
T ss_dssp EEECCCCCGGGTT-----CB--------SHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCCCchHHHH-----hc--------CHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhC
Confidence 9999984322111 11 13456778999999999998888888888888764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=100.06 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=79.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++.+... +..........++.. ++. +++++|
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~--g~~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~i~~-~d~-~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVDKKRAEGDALD--------LIHGTPFTRRANIYA-GDY-ADLKGS 68 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSCCCEEEE-CCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHHH--------HHhhhhhcCCcEEEe-CCH-HHhCCC
Confidence 7999999999999999999998 88 999999999888775421 000000000123454 464 468999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||+|+|++.... ....|+ ..++++++.|.++. ++.++++ .|.|.++...
T Consensus 69 DvViiav~~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~-~tNp~~~~~~ 124 (319)
T 1a5z_A 69 DVVIVAAGVPQKPG----ETRLQLLGRNARVMKEIARNVSKYA-PDSIVIV-VTNPVDVLTY 124 (319)
T ss_dssp SEEEECCCCCCCSS----CCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHHH
T ss_pred CEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-eCCcHHHHHH
Confidence 99999999876431 012232 33577888888875 4665554 5778877543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=100.26 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=80.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHH--HH--HcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRIN--AW--NSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~--~l--~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++ .+ ..+ .++.. ..+++.+++.+
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~-----------~~~v~~~~~~~- 71 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAKERVEAEVLDMQHG-SSFYP-----------TVSIDGSDDPE- 71 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHHHT-GGGST-----------TCEEEEESCGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHHHHHHHHHHhh-hhhcC-----------CeEEEeCCCHH-
Confidence 48999999999999999999998 88 9999999998776 23 222 11110 12456666754
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIE 138 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~ 138 (480)
++++||+||+|+++|..... ... +...+.++++.+.++ .++++|+. .|.|.++...+.
T Consensus 72 ~~~~aD~Vii~v~~~~~~g~----~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~-~~Np~~~~~~~~ 134 (319)
T 1lld_A 72 ICRDADMVVITAGPRQKPGQ----SRLELVGATVNILKAIMPNLVKV-APNAIYML-ITNPVDIATHVA 134 (319)
T ss_dssp GGTTCSEEEECCCCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE-CCSSHHHHHHHH
T ss_pred HhCCCCEEEECCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE-ecCchHHHHHHH
Confidence 58999999999987753210 011 224455778888876 56776654 577877765543
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-09 Score=102.81 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=65.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++. . .......+++++++.||+
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~------~------------------~~~~~~~sl~ell~~aDv 225 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAF--GMSVRYWNRSTLS------G------------------VDWIAHQSPVDLARDSDV 225 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCT------T------------------SCCEECSSHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCccc------c------------------cCceecCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999997642 0 013445688898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+ +-+...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 226 Vil~vP~t~~t-----------~~l--i~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 275 (340)
T 4dgs_A 226 LAVCVAASAAT-----------QNI--VDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG 275 (340)
T ss_dssp EEECC-----------------------CHHHHHHTTTTCEEEECSCC--------------C
T ss_pred EEEeCCCCHHH-----------HHH--hhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 99999842211 111 124566778999999998887766666777777653
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=106.60 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=78.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|... |++|++||+++........| +..+ +++++++.||+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g--------------------~~~~-~l~e~~~~aDv 199 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQLG--------------------IELL-SLDDLLARADF 199 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHHHT--------------------CEEC-CHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEECCCCChhHHHhcC--------------------cEEc-CHHHHHhcCCE
Confidence 6899999999999999999987 99999999976432211111 2333 67888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..++ +.+.+.+++++++++.|+..+-..+.+.+.+++.
T Consensus 200 V~l~~P~~~~t--------------~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g 249 (529)
T 1ygy_A 200 ISVHLPKTPET--------------AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 249 (529)
T ss_dssp EEECCCCSTTT--------------TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred EEECCCCchHH--------------HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcC
Confidence 99999854211 1112 2356778999999999988887777788878763
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=7.7e-09 Score=102.73 Aligned_cols=115 Identities=17% Similarity=0.314 Sum_probs=74.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHH----HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ |+ +|.++|+++++++. +.... ++. ...+++.+..++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~~~~~~g~~~dl~~~~-~~~-------------~~~~i~~~~~~a 71 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFKEKAIGEAMDINHGL-PFM-------------GQMSLYAGDYSD 71 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC---CCHHHHHHTTSC-CCT-------------TCEEEC--CGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChHHHHHHHHHHHHhH-Hhc-------------CCeEEEECCHHH
Confidence 6899999999999999999987 66 99999999876543 22211 110 123333223456
Q ss_pred hccCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++||+||+++++|..... ++ ..+.+.++++.+.+.++. ++.+|++ .|+|+++...+
T Consensus 72 ~~~aDvVii~~g~p~k~g~---~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~~~~ 132 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKPGE---TRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV-VSNPVDIITYM 132 (318)
T ss_dssp GTTCSEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE-CSSSHHHHHHH
T ss_pred hCCCCEEEEcCCCCCCCCc---CHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHHH
Confidence 9999999999999864310 00 123445678888888885 5666666 58999986654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-08 Score=98.70 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=79.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.......| ... .++++.++.||+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~g--------------------~~~-~~l~ell~~aDv 222 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSF--GMKTIGYDPIISPEVSASFG--------------------VQQ-LPLEEIWPLCDF 222 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSCHHHHHHTT--------------------CEE-CCHHHHGGGCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchhhhhhcC--------------------cee-CCHHHHHhcCCE
Confidence 5899999999999999999876 99999999986652211111 232 377888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 223 V~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g 272 (335)
T 2g76_A 223 ITVHTPLLPSTTG-----LLN--------DNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 272 (335)
T ss_dssp EEECCCCCTTTTT-----SBC--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEecCCCHHHHH-----hhC--------HHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC
Confidence 9999986432110 111 3456788999999999987776677788878764
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-08 Score=98.97 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=80.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++....... +.....++++.++.||+
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDv 226 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVERAL--------------------GLQRVSTLQDLLFHSDC 226 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHHHHH--------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchhhHhhc--------------------CCeecCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999987542111000 13445578888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 227 V~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 276 (347)
T 1mx3_A 227 VTLHCGLNEHNHH-----LIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 276 (347)
T ss_dssp EEECCCCCTTCTT-----SBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHHHH-----HhH--------HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence 9999985322110 111 3455678999999999999888888888888764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-08 Score=99.36 Aligned_cols=115 Identities=18% Similarity=0.312 Sum_probs=80.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHh-hhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +..... .....+++.++|+ +++++|
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~a~~~a 73 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAEGIPQGKALD--------ITHSMVMFGSTSKVIGTDDY-ADISGS 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCchHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence 7999999999999999999998 88 999999999887764210 000000 0012467888888 679999
Q ss_pred cEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||+|++.|..... .+. +...++++++++.++.+ +++++.. |.|.+.
T Consensus 74 DiVi~avg~p~~~g~----~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~-sNp~~~ 126 (317)
T 2ewd_A 74 DVVIITASIPGRPKD----DRSELLFGNARILDSVAEGVKKYCP-NAFVICI-TNPLDV 126 (317)
T ss_dssp SEEEECCCCSSCCSS----CGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEEC-CSSHHH
T ss_pred CEEEEeCCCCCCCCC----cHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEe-CChHHH
Confidence 999999988765411 111 23446778888888865 7776654 345444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=103.67 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+++...+.... .+++...++++.++.||+
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~~~~~-------------------~G~~~~~~l~ell~~aDv 250 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV 250 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred CEEEEEeECHHHHHHHHHHHhC--CCEEEEEcCCccchhhHhh-------------------cCceecCCHHHHHhcCCE
Confidence 6899999999999999999887 9999999997543322221 023444578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus 251 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 300 (393)
T 2nac_A 251 VTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRDAVARALESG 300 (393)
T ss_dssp EEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEecCCchHHHH-----Hhh--------HHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence 9999985322100 111 3455778999999999887666667788888764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-08 Score=98.81 Aligned_cols=116 Identities=18% Similarity=0.332 Sum_probs=74.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcC---CCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSD---QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++..... ..++. ...+++. ++. +++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~-----------~~~~i~~-~~~-~a~ 65 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDEDRAQAEAEDIAHAAPVS-----------HGTRVWH-GGH-SEL 65 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHTTSCCTT-----------SCCEEEE-ECG-GGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCHHHHHHHHHhhhhhhhhc-----------CCeEEEE-CCH-HHh
Confidence 7999999999999999999998 88 999999999876643321 11110 0123443 455 569
Q ss_pred ccCcEEEEeccCCCCCCCC-CCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 77 SEADIVFVSVNTPTKTQGL-GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~-~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
++||+||+|++.|...... ++.-..++..++++++.+.++. ++.+|++ .|.|.++.
T Consensus 66 ~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~-~tNP~~~~ 122 (304)
T 2v6b_A 66 ADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLV-TSNPVDLL 122 (304)
T ss_dssp TTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEE-CSSSHHHH
T ss_pred CCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEE-ecCchHHH
Confidence 9999999999877532100 0000124455678888888884 6776665 57777653
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-09 Score=105.24 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=78.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++..+. . .......++++.++.||+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~------------~---------~~~~~~~~l~ell~~aDv 197 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHF--GMKVLGVSRSGRERAG------------F---------DQVYQLPALNKMLAQADV 197 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCCTT------------C---------SEEECGGGHHHHHHTCSE
T ss_pred ceEEEEEECHHHHHHHHHHHhC--CCEEEEEcCChHHhhh------------h---------hcccccCCHHHHHhhCCE
Confidence 6899999999999999999987 9999999997531110 0 011223578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..+ +.....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 198 V~l~lPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 247 (324)
T 3hg7_A 198 IVSVLPATRETHH-----LFT--------ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG 247 (324)
T ss_dssp EEECCCCCSSSTT-----SBC--------TTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHH-----HhH--------HHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcC
Confidence 9999984322111 111 2345678899999999988877778888888764
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.7e-08 Score=94.28 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=79.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.++|..|+.+ |+ +|.+||+++++++..... +...... ....++++++| .+++++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d-~~a~~~ 69 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGAD-YSLLKG 69 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHH--------HHHHHHTTTCCCEEEEESC-GGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECChHHHHHHHHH--------HHhhhhhcCCCCEEEEeCC-HHHhCC
Confidence 8999999999999999999988 77 999999999887632210 0000000 01235777788 667999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.+.|.... ..+. +.+.+++..+.|.++. ++.++++- |.|..+.-.
T Consensus 70 aDiVViaag~~~kpG----~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivv-sNPvd~~t~ 126 (294)
T 1oju_A 70 SEIIVVTAGLARKPG----MTRLDLAHKNAGIIKDIAKKIVENA-PESKILVV-TNPMDVMTY 126 (294)
T ss_dssp CSEEEECCCCCCCSS----CCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEEC-SSSHHHHHH
T ss_pred CCEEEECCCCCCCCC----CcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-CCcchHHHH
Confidence 999999999886441 1122 2344566667777774 45665554 477776433
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.4e-08 Score=97.05 Aligned_cols=108 Identities=9% Similarity=0.096 Sum_probs=79.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++...+.... .+... .++++.++.||+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~-~~l~ell~~aDv 203 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGW--GATLQYHEAKALDTQTEQR-------------------LGLRQ-VACSELFASSDF 203 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTS--CCEEEEECSSCCCHHHHHH-------------------HTEEE-CCHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCCCcHhHHHh-------------------cCcee-CCHHHHHhhCCE
Confidence 6899999999999999999876 9999999998633222211 02333 378888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ .. -+...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 204 V~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 253 (330)
T 4e5n_A 204 ILLALPLNADTLH-----LV--------NAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253 (330)
T ss_dssp EEECCCCSTTTTT-----CB--------CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 9999985322110 11 14566788999999999988777777888888764
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-08 Score=98.96 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=77.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++ +. + .....++++.++.||+
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~dr~~~--~~---~--------------------~~~~~~l~ell~~aDv 177 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK--EG---P--------------------WRFTNSLEEALREARA 177 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC--CS---S--------------------SCCBSCSHHHHTTCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcc--cc---C--------------------cccCCCHHHHHhhCCE
Confidence 6899999999999999999987 999999999764 11 1 0112456778899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|...... .+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 178 V~l~~P~~~~t~-----------~~i--~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g 227 (303)
T 1qp8_A 178 AVCALPLNKHTR-----------GLV--KYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER 227 (303)
T ss_dssp EEECCCCSTTTT-----------TCB--CHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred EEEeCcCchHHH-----------HHh--CHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence 999998642211 111 13456788999999999997776677788888764
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-08 Score=96.86 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=78.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++......... +... .++++.++.||+
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~--------------------g~~~-~~l~ell~~aDv 233 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGF--RARIRVFDPWLPRSMLEEN--------------------GVEP-ASLEDVLTKSDF 233 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTS--CCEEEEECSSSCHHHHHHT--------------------TCEE-CCHHHHHHSCSE
T ss_pred CEEEEecCCcccHHHHHhhhhC--CCEEEEECCCCCHHHHhhc--------------------Ceee-CCHHHHHhcCCE
Confidence 5899999999999999998876 9999999997533221111 1233 478888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|..... ..+. -+.....++++.++|+.|..++-..+.+.+.|++.
T Consensus 234 V~l~~Plt~~T-----------~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 283 (365)
T 4hy3_A 234 IFVVAAVTSEN-----------KRFL--GAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSG 283 (365)
T ss_dssp EEECSCSSCC--------------CC--CHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT
T ss_pred EEEcCcCCHHH-----------Hhhc--CHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcC
Confidence 99999854221 1111 14456778999999999988777777888888764
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-08 Score=99.58 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=80.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+... |++ |++||+++...+...+ .+.....++++.++.||
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~--G~~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aD 223 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPF--NPKELLYYDYQALPKDAEEK-------------------VGARRVENIEELVAQAD 223 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--CCSEEEEECSSCCCHHHHHH-------------------TTEEECSSHHHHHHTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEECCCccchhHHHh-------------------cCcEecCCHHHHHhcCC
Confidence 5899999999999999999887 897 9999998644433222 12444567888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 224 vV~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g 274 (364)
T 2j6i_A 224 IVTVNAPLHAGTKG-----LIN--------KELLSKFKKGAWLVNTARGAICVAEDVAAALESG 274 (364)
T ss_dssp EEEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEECCCCChHHHH-----HhC--------HHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 99999985422110 111 3455778999999999987776777788888764
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-08 Score=99.91 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=78.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++.. .. +......++++.++.||+
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~yd~~~~~---------~~--------------~~~~~~~sl~ell~~aDv 211 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESL--GMTVRYYDTSDKL---------QY--------------GNVKPAASLDELLKTSDV 211 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCCC---------CB--------------TTBEECSSHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCcchh---------cc--------------cCcEecCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999986320 00 123455788999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ ..+ +.....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 212 V~lhvPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g 261 (416)
T 3k5p_A 212 VSLHVPSSKSTSK-----LIT--------EAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG 261 (416)
T ss_dssp EEECCCC-----C-----CBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred EEEeCCCCHHHhh-----hcC--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence 9999985322110 111 3455678999999999998887788888888764
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=102.72 Aligned_cols=209 Identities=14% Similarity=0.032 Sum_probs=115.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHc----CCCCeEEEEECCHH-HHHHHH-cCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALK----CPSIEVAVVDISVS-RINAWN-SDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~----~~G~~V~~~D~~~~-~v~~l~-~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
++||+|||+|.||.++|.+|.+. +.|++|++.+++.+ ..+... .|.... .. .+.++++
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~--------------d~--ta~s~aE 117 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEE--------------SG--TLGDIWE 117 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTT--------------TT--CEEEHHH
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEe--------------cC--CCCCHHH
Confidence 47999999999999999999875 23688886665432 222222 221000 00 1246788
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH-HHHHHHHhcCCCCceEEe
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~-~l~~~l~~~~~g~~~~v~ 153 (480)
++++||+||++||.. ...+++++|.++++++++|++.+ |.+- .+.+.......+.++ +.
T Consensus 118 Aa~~ADVVILaVP~~---------------~~~eVl~eI~p~LK~GaILs~Aa----Gf~I~~le~~~i~~p~dv~V-Vr 177 (525)
T 3fr7_A 118 TVSGSDLVLLLISDA---------------AQADNYEKIFSHMKPNSILGLSH----GFLLGHLQSAGLDFPKNISV-IA 177 (525)
T ss_dssp HHHHCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEESS----SHHHHHHHHTTCCCCTTSEE-EE
T ss_pred HHhcCCEEEECCChH---------------HHHHHHHHHHHhcCCCCeEEEeC----CCCHHHHhhhcccCCCCCcE-EE
Confidence 899999999998831 23456778999999999976543 4322 222100011112232 33
Q ss_pred eCCcccccccccc-----c----cCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhh-Hh-H
Q 011641 154 SNPEFLAEGTAIQ-----D----LFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA-AN-A 221 (480)
Q Consensus 154 ~~Pe~~~~G~a~~-----~----~~~~~-~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~-~N-~ 221 (480)
.+|.. ||..+. + +...+ -+-+..+. +.+..+.+..++..++. ..+..++...---..++ +- +
T Consensus 178 VmPNt--Pg~~VR~~y~~G~~~~g~Gv~~liAv~qd~---tgea~e~alala~aiG~-~~vieTtf~eE~e~DLfgeqtv 251 (525)
T 3fr7_A 178 VCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATDVALGWSVALGS-PFTFATTLEQEYKSDIFGERGI 251 (525)
T ss_dssp EEESS--CHHHHHHHHHHHTTSTTCSCCEEEEEEECS---SSCHHHHHHHHHHHTTC-SEEEECCHHHHHHHHHHHHHTT
T ss_pred EecCC--CchhHHHHHhcccccccCCccEEEEcCCCC---CHHHHHHHHHHHHHCCC-CeeeeeeeeeehhHhhhhhHhh
Confidence 45532 333210 1 01223 22222221 34678899999999874 33433443311111111 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 011641 222 FLAQRISSVNAMSALCEATGANVSQVAFAV 251 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~ 251 (480)
+.....+++.-+.....+.|++++..+..+
T Consensus 252 LsG~~pAlieA~~d~lVe~G~~pe~Ay~~~ 281 (525)
T 3fr7_A 252 LLGAVHGIVEALFRRYTEQGMDEEMAYKNT 281 (525)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 223334566667777778999987665544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.6e-08 Score=95.13 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=79.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|++|.++|..|+.+ | .+|.++|+++++++..... +.... ......++++.+..+++++|
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~--~~~~ei~L~Di~~~~~~g~~~d--------l~~~~-~~~~~~~~v~~~~~~a~~~a 75 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ--SIVDELVIIDLDTEKVRGDVMD--------LKHAT-PYSPTTVRVKAGEYSDCHDA 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--CSCSEEEEECSCHHHHHHHHHH--------HHHHG-GGSSSCCEEEECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHhhhhhhh--------HHhhh-hhcCCCeEEEeCCHHHhCCC
Confidence 5999999999999999999987 5 5999999999876642210 00100 01111233433446679999
Q ss_pred cEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||++++.|..... ++ ..+...++++.+.|.++. ++.+|++ .|.|.++...
T Consensus 76 DvVvi~ag~~~~~g~---~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~t~ 131 (317)
T 3d0o_A 76 DLVVICAGAAQKPGE---TRLDLVSKNLKIFKSIVGEVMASK-FDGIFLV-ATNPVDILAY 131 (317)
T ss_dssp SEEEECCCCCCCTTC---CHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHHHH
T ss_pred CEEEECCCCCCCCCC---cHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHH
Confidence 999999998865310 00 123456677777887774 5666666 6789888544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=95.01 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=79.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++. ... ...... +++++++.||+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~--~~~--------------------~~~~~~-~l~ell~~aDv 203 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAM--GAKVIAYDVAYNP--EFE--------------------PFLTYT-DFDTVLKEADI 203 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCG--GGT--------------------TTCEEC-CHHHHHHHCSE
T ss_pred CeEEEEecCHHHHHHHHHHhhC--CCEEEEECCChhh--hhh--------------------cccccc-CHHHHHhcCCE
Confidence 5899999999999999999987 9999999998643 111 112333 78888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++++|......+ ..+ +.....++++.++|+.|+.++-..+.+.+.|++..
T Consensus 204 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 254 (343)
T 2yq5_A 204 VSLHTPLFPSTEN-----MIG--------EKQLKEMKKSAYLINCARGELVDTGALIKALQDGE 254 (343)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred EEEcCCCCHHHHH-----Hhh--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCC
Confidence 9999985322211 111 34456789999999999888777788888887643
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6e-08 Score=99.21 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=79.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++.. . .+......++++.++.||+
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-----~------------------~~~~~~~~~l~ell~~aDv 200 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL-----P------------------LGNATQVQHLSDLLNMSDV 200 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC-----C------------------CTTCEECSCHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEEcCCchh-----c------------------cCCceecCCHHHHHhcCCE
Confidence 5899999999999999999887 9999999986431 0 0123455678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ -.+ +.....++++.++|+.|+..+-..+.+.+.|++.
T Consensus 201 V~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 250 (404)
T 1sc6_A 201 VSLHVPENPSTKN-----MMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK 250 (404)
T ss_dssp EEECCCSSTTTTT-----CBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred EEEccCCChHHHH-----Hhh--------HHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence 9999985422111 111 3345678999999999998777777888888763
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-08 Score=101.18 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=77.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++..+. +. ......++++.++.||+
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~------------~~---------~~~~~~~l~ell~~aDi 196 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAW--GFPLRCWSRSRKSWPG------------VE---------SYVGREELRAFLNQTRV 196 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCCCCTT------------CE---------EEESHHHHHHHHHTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCchhhhh------------hh---------hhcccCCHHHHHhhCCE
Confidence 6899999999999999999987 9999999997642110 00 01112467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ .. -+.....++++.++|+.|..+.-..+.+.+.|++.
T Consensus 197 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 246 (315)
T 3pp8_A 197 LINLLPNTAQTVG-----II--------NSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG 246 (315)
T ss_dssp EEECCCCCGGGTT-----CB--------SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCchhhhh-----hc--------cHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhC
Confidence 9999984321110 11 13456778999999999988777778888888764
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=94.10 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=79.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++..... +...... ....++++++|+ +++++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~--~~~~v~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~v~~t~d~-~a~~~ 75 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLK--ELGDVVLFDIAEGTPQGKGLD--------IAESSPVDGFDAKFTGANDY-AAIEG 75 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHHTCCCCEEEESSG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCchhHHHHHHH--------HhchhhhcCCCCEEEEeCCH-HHHCC
Confidence 37999999999999999999998 77 999999999887543210 1111000 012457778887 67999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.++|.... ..+. +...+++..+.|.++. ++.++++- |.|..+.-.
T Consensus 76 aDiVIiaag~p~k~G----~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivv-tNPvd~~t~ 132 (324)
T 3gvi_A 76 ADVVIVTAGVPRKPG----MSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICI-TNPLDAMVW 132 (324)
T ss_dssp CSEEEECCSCCCC---------CHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHH
T ss_pred CCEEEEccCcCCCCC----CCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEec-CCCcHHHHH
Confidence 999999998886541 1122 3345566677777776 45555443 467665443
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.1e-08 Score=95.87 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=77.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHH----HHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~ 74 (480)
|||+|||+|+||.++|..|+.. |+ +|+++|+++++++. |+.+ .++.. ..+++ +++. +
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~------------~~v~i~~~~~-~ 69 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ--GITDELVVIDVNKEKAMGDVMDLNHG-KAFAP------------QPVKTSYGTY-E 69 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHT-GGGSS------------SCCEEEEECG-G
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHHHHHhc-ccccc------------CCeEEEeCcH-H
Confidence 7999999999999999999988 65 99999999998776 5544 33321 12233 3454 5
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++||+||+|.++|..... .+.| .+.+++..+.+.++.+ +.++++ -|.|..+...
T Consensus 70 a~~~aDvVvi~ag~p~kpG~----~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlv-vtNPvd~~t~ 130 (326)
T 3pqe_A 70 DCKDADIVCICAGANQKPGE----TRLELVEKNLKIFKGIVSEVMASGF-DGIFLV-ATNPVDILTY 130 (326)
T ss_dssp GGTTCSEEEECCSCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred HhCCCCEEEEecccCCCCCc----cHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEE-cCChHHHHHH
Confidence 69999999999998865411 1223 3445666677777654 555544 3567765433
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-08 Score=96.68 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=74.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++..+ .. ..++++.++.||+
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~-------------------------~~-~~~l~ell~~aDv 196 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAF--GMRVVYHARTPKPLP-------------------------YP-FLSLEELLKEADV 196 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSSS-------------------------SC-BCCHHHHHHHCSE
T ss_pred CEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCcccc-------------------------cc-cCCHHHHHhhCCE
Confidence 6899999999999999999987 999999999764321 01 2466777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT 142 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~ 142 (480)
|++|+|......+ ..+ +...+.++++.++|+.|+..+-..+.+.+.++
T Consensus 197 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 197 VSLHTPLTPETHR-----LLN--------RERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred EEEeCCCChHHHh-----hcC--------HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 9999986422100 111 23456789999999999877666677877776
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=80.64 Aligned_cols=126 Identities=13% Similarity=0.226 Sum_probs=77.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEEecCH---HH-hh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDV---EK-HV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~-a~ 76 (480)
|+|+|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+. .......+ .++. .+ .+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~~~~~~~~d---------------~~~~~~l~~~~~ 67 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEIDALVINGD---------------CTKIKTLEDAGI 67 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCSSEEEESC---------------TTSHHHHHHTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhcCcEEEEcC---------------CCCHHHHHHcCc
Confidence 7999999999999999999998 89999999999998887642 11110000 0111 11 25
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
.++|+||+|+|.+. ....+..+++.++++.+|+. + ..++..+ .+++.+ .+ .+.+|
T Consensus 68 ~~~d~vi~~~~~~~---------------~~~~~~~~~~~~~~~~ii~~-~-~~~~~~~----~l~~~g--~~--~v~~p 122 (140)
T 1lss_A 68 EDADMYIAVTGKEE---------------VNLMSSLLAKSYGINKTIAR-I-SEIEYKD----VFERLG--VD--VVVSP 122 (140)
T ss_dssp TTCSEEEECCSCHH---------------HHHHHHHHHHHTTCCCEEEE-C-SSTTHHH----HHHHTT--CS--EEECH
T ss_pred ccCCEEEEeeCCch---------------HHHHHHHHHHHcCCCEEEEE-e-cCHhHHH----HHHHcC--CC--EEECH
Confidence 68999999977421 12233344555666676653 2 2334433 333332 22 45788
Q ss_pred ccccccccccccC
Q 011641 157 EFLAEGTAIQDLF 169 (480)
Q Consensus 157 e~~~~G~a~~~~~ 169 (480)
++...+.....+.
T Consensus 123 ~~~~~~~~~~~~~ 135 (140)
T 1lss_A 123 ELIAANYIEKLIE 135 (140)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 7766554443333
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=99.41 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=81.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..|++.. |+ +|++||+++++.+.+.+.. ...+..+++++++++++|
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~-g~~~V~v~dr~~~~~~~l~~~~----------------~~~~~~~~~~~e~v~~aD 198 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQF-SFKEVRIWNRTKENAEKFADTV----------------QGEVRVCSSVQEAVAGAD 198 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-CCSEEEEECSSHHHHHHHHHHS----------------SSCCEECSSHHHHHTTCS
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHh----------------hCCeEEeCCHHHHHhcCC
Confidence 68999999999999999998752 44 8999999999988876421 002456788888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|++|+|... . ++.. +.++++++|+..|+..|+. +++.+.+.+.+ ..++.+++
T Consensus 199 iVi~atp~~~-~----------------v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g----~~~vD~~~ 251 (312)
T 2i99_A 199 VIITVTLATE-P----------------ILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEA----VLYVDSQE 251 (312)
T ss_dssp EEEECCCCSS-C----------------CBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHS----EEEESCHH
T ss_pred EEEEEeCCCC-c----------------ccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcC----EEEECCHH
Confidence 9999987421 1 0111 4678899999888887776 34433343332 24456443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-07 Score=91.53 Aligned_cols=119 Identities=15% Similarity=0.160 Sum_probs=81.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..|+.+ |+ +|.++|+++++++..... +..........++..++|+++ +++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~--g~~~ev~L~Di~~~~~~g~a~D--------L~~~~~~~~~~~i~~t~d~~~-~~d 89 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMK--DLADEVALVDVMEDKLKGEMMD--------LEHGSLFLHTAKIVSGKDYSV-SAG 89 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHH--CCCSEEEEECSCHHHHHHHHHH--------HHHHGGGSCCSEEEEESSSCS-CSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHH--------hhhhhhcccCCeEEEcCCHHH-hCC
Confidence 47999999999999999999988 65 999999999887654321 000000001235677889876 999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.++|.... ..+.| .+.+++..+.+.++. ++.++++- |.|..+.-.
T Consensus 90 aDiVIitaG~p~kpG----~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvv-tNPvdi~t~ 146 (330)
T 3ldh_A 90 SKLVVITAGARQQEG----ESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELH-PELGTDKNK 146 (330)
T ss_dssp CSEEEECCSCCCCSS----CCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEEC-SSSHHHHHH
T ss_pred CCEEEEeCCCCCCCC----CCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeC-CCccHHHHH
Confidence 999999999886541 11233 344566777888874 56655543 467766443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=92.99 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=77.4
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHH----HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+|||+|||+ |++|.++|..++..+...+|.++|+++++++. |+.+. + + ..++++++++.++
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--~--~----------~~~i~~t~d~~~a 73 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--F--E----------GLNLTFTSDIKEA 73 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--C--T----------TCCCEEESCHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--C--C----------CCceEEcCCHHHH
Confidence 379999997 99999999999987222589999999987765 33321 1 0 1357788998888
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++||+||+|..+|.... ..+.| ...+++..+.+.++.+...+|++ -|.|..+.-.+
T Consensus 74 l~dADvVvitaG~p~kpG----~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlv-vsNPvd~~t~i 135 (343)
T 3fi9_A 74 LTDAKYIVSSGGAPRKEG----MTREDLLKGNAEIAAQLGKDIKSYCPDCKHVII-IFNPADITGLV 135 (343)
T ss_dssp HTTEEEEEECCC-----------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEE-CSSSHHHHHHH
T ss_pred hCCCCEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE-ecCchHHHHHH
Confidence 999999999998876431 11233 24445566667777654432333 36787765443
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=4e-07 Score=90.34 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=79.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..|+.+ |+ +|.++|+++++++..... +...... ....+++.+++. +++++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~--~~~~v~l~Di~~~~~~g~a~d--------L~~~~~~~~~~~~v~~t~d~-~a~~~ 73 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIK--QLGDVVLFDIAQGMPNGKALD--------LLQTCPIEGVDFKVRGTNDY-KDLEN 73 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCChHHHHHHHHH--------HHhhhhhcCCCcEEEEcCCH-HHHCC
Confidence 37999999999999999999987 66 999999999876543211 0000000 012356667786 56999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.+.|.... ..+. +.+.+++..+.|.++. ++.++++- |.|.++.-.
T Consensus 74 aDvVIi~ag~p~k~G----~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvd~~t~ 130 (321)
T 3p7m_A 74 SDVVIVTAGVPRKPG----MSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICI-TNPLDIMVN 130 (321)
T ss_dssp CSEEEECCSCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHH
T ss_pred CCEEEEcCCcCCCCC----CCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEe-cCchHHHHH
Confidence 999999998886541 1111 3455667777777777 45555543 678776543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-07 Score=90.72 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=80.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCC--CeEEEEECCHHHHH--HHHcCCCCCcCCChHHHHhhhcCCCEEE---ecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPS--IEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFF---STDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~---t~d~~ 73 (480)
|||+|||+ |++|.+++..|+.. | ++|.++|+++.... .|.... ...+++. ++|++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~--~~~~ev~L~Di~~~~~~a~dL~~~~---------------~~~~l~~~~~t~d~~ 63 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYDIAHTPGVAADLSHIE---------------TRATVKGYLGPEQLP 63 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEESSSHHHHHHHHTTSS---------------SSCEEEEEESGGGHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEeCCccHHHHHHHhccC---------------cCceEEEecCCCCHH
Confidence 79999998 99999999999987 6 79999999873222 222211 0123555 36788
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++++||+||++.+.|.... ..+.|+ ..++++.+.+.++.+ +.++++ .|.|.++...+
T Consensus 64 ~a~~~aDvVvi~ag~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv-~sNPv~~~~~i 126 (314)
T 1mld_A 64 DCLKGCDVVVIPAGVPRKPG----MTRDDLFNTNATIVATLTAACAQHCP-DAMICI-ISNPVNSTIPI 126 (314)
T ss_dssp HHHTTCSEEEECCSCCCCTT----CCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSCHHHHHHH
T ss_pred HHhCCCCEEEECCCcCCCCC----CcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE-ECCCcchhHHH
Confidence 88999999999998886441 123455 677788888888775 445544 47888876543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.1e-07 Score=88.27 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=78.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC--HHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS--VSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~--~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~ 77 (480)
+||+|||+|.||.++|..|+.+ |+ +|+++|++ +++.+..... +....... ...+++.+++++ +++
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~~~~~~~~g~a~d--------l~~~~~~~~~~~~i~~t~d~~-a~~ 77 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIPQLENPTKGKALD--------MLEASPVQGFDANIIGTSDYA-DTA 77 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCGGGHHHHHHHHHH--------HHHHHHHHTCCCCEEEESCGG-GGT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeccchHHHHHHhhhh--------HHHhhhhccCCCEEEEcCCHH-HhC
Confidence 5899999999999999999998 88 99999999 5555544311 11110000 234677788865 599
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+||++.++|..+.. .+.| .+.+++..+.+.++.+ +.++++- |.|..+.-.
T Consensus 78 ~aDvVIiaag~p~kpg~----~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvv-sNPvd~~t~ 135 (315)
T 3tl2_A 78 DSDVVVITAGIARKPGM----SRDDLVATNSKIMKSITRDIAKHSP-NAIIVVL-TNPVDAMTY 135 (315)
T ss_dssp TCSEEEECCSCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEC-CSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEC-CChHHHHHH
Confidence 99999999998865411 1222 2345666677777754 5555443 467666443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.5e-08 Score=95.80 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=78.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+++++. +.+. .++.+++++.++.||+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~~--------------------~~~~~~l~ell~~aDv 202 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPE--LEKK--------------------GYYVDSLDDLYKQADV 202 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHH--HHHT--------------------TCBCSCHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcchh--HHhh--------------------CeecCCHHHHHhhCCE
Confidence 5899999999999999999987 99999999987653 2211 1122467788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus 203 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 252 (333)
T 1j4a_A 203 ISLHVPDVPANVH-----MIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252 (333)
T ss_dssp EEECSCCCGGGTT-----CBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCcHHHHH-----HHh--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 9999985322100 111 3345678899999999987777777888888764
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-07 Score=90.77 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=77.6
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCC--CeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhhhcCCCEEE---ecCH
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPS--IEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFF---STDV 72 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G--~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~---t~d~ 72 (480)
+|||+|+| +|++|.+++..|+.. | ++|+++|++++. +..+..... ...++. ++|+
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~--g~~~ev~l~Di~~~~~~~~dL~~~~~---------------~~~v~~~~~t~d~ 70 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMN--PLVSVLHLYDVVNAPGVTADISHMDT---------------GAVVRGFLGQQQL 70 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHC--TTEEEEEEEESSSHHHHHHHHHTSCS---------------SCEEEEEESHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEeCCCcHhHHHHhhcccc---------------cceEEEEeCCCCH
Confidence 38999999 899999999999987 7 899999998762 222332110 013444 4577
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++++||+||+|.+.|.... ....|+ ..++++++.+.+.. ++.+|++ +|+|.+++-.
T Consensus 71 ~~al~gaDvVi~~ag~~~~~g----~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv-~SNPv~~~~~ 133 (326)
T 1smk_A 71 EAALTGMDLIIVPAGVPRKPG----MTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL-ISNPVNSTVP 133 (326)
T ss_dssp HHHHTTCSEEEECCCCCCCSS----CCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE-CCSSHHHHHH
T ss_pred HHHcCCCCEEEEcCCcCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-ECCchHHHHH
Confidence 888999999999998876431 113344 45566666666665 4555555 6899988543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=6.8e-07 Score=88.63 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=74.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.+|.+++..|+.+ +. ++.++|+++++++..... +..... .. ..++++.+..+++++|
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~~~d--------l~~~~~-~~-~~~~v~~~~~~a~~~a 73 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ--GIAEEFVIVDVVKDRTKGDALD--------LEDAQA-FT-APKKIYSGEYSDCKDA 73 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHGGGG-GS-CCCEEEECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHHHHHHHH--------HHHHHH-hc-CCeEEEECCHHHhCCC
Confidence 7999999999999999999987 54 899999999887753321 000000 00 2334444445679999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||++.+.|.... ..+.|+ ..+++..+.+.++. ++.++++ -|.|.++...
T Consensus 74 DvVii~ag~~~~~g----~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNPv~~~t~ 129 (318)
T 1ez4_A 74 DLVVITAGAPQKPG----ESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLV-AANPVDILTY 129 (318)
T ss_dssp SEEEECCCC--------------CHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHHHH
T ss_pred CEEEECCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-eCCcHHHHHH
Confidence 99999998876431 112344 55667777777775 4565555 3788887544
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=94.66 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=77.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.. + .. . ... .++++.++.||+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~-~~------------------~-~~~-~~l~ell~~aDv 200 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMKG--D-HP------------------D-FDY-VSLEDLFKQSDV 200 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSS--C-CT------------------T-CEE-CCHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCcchh--h-Hh------------------c-ccc-CCHHHHHhcCCE
Confidence 5899999999999999999987 99999999975421 0 00 1 222 377888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 201 V~~~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g 250 (333)
T 1dxy_A 201 IDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 250 (333)
T ss_dssp EEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred EEEcCCCchhHHH-----HhC--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 9999986432110 111 3455678999999999998777778888888764
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-07 Score=93.57 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=57.8
Q ss_pred cEEEEECCChhH--HHHHHHHHHc--CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVG--GPTMAVIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G--~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.|| .++|..|+.. .+|++|++||+++++++.++.. ....+.. ....++++++|+++++
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~--------~~~~l~~~~~~~~I~~ttD~~eal 75 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI 75 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHH--------HHHHhccCCCCcEEEEECCHHHHh
Confidence 699999999974 5557777742 1378999999999998875531 1111111 1134688899998889
Q ss_pred ccCcEEEEeccC
Q 011641 77 SEADIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||+++|+
T Consensus 76 ~dAD~VIiaagv 87 (480)
T 1obb_A 76 IDADFVINTAMV 87 (480)
T ss_dssp TTCSEEEECCCT
T ss_pred CCCCEEEECCCc
Confidence 999999999975
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=87.10 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=76.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||.++|..++.++...+|+++|+++++.+....+ +.+... ......+++++..+++++||
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~d--------l~~~~~-~~~~~~~i~~~~~~al~~aD 76 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD--------FNHGKV-FAPKPVDIWHGDYDDCRDAD 76 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHTT-SSSSCCEEEECCGGGTTTCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhh--------HHHHhh-hcCCCeEEEcCcHHHhCCCC
Confidence 379999999999999999998872224899999998866643221 000000 00112344344456799999
Q ss_pred EEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|.|.|.... ..+.| .+.+.++++.+.++. ++.++++ -|.|......
T Consensus 77 vViia~~~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv-~tNPv~~~~~ 131 (316)
T 1ldn_A 77 LVVICAGANQKPG----ETRLDLVDKNIAIFRSIVESVMASG-FQGLFLV-ATNPVDILTY 131 (316)
T ss_dssp EEEECCSCCCCTT----TCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEE-CSSSHHHHHH
T ss_pred EEEEcCCCCCCCC----CCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEE-eCCchHHHHH
Confidence 9999998876431 11223 244556667777776 4555554 4678776544
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=92.97 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=77.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++.+..+ . + . ...+++++++.||+
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~----~------------------~-~-~~~sl~ell~~aDi 173 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEAL--GIRTLLCDPPRAARG----D------------------E-G-DFRTLDELVQEADV 173 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHTT----C------------------C-S-CBCCHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCChHHhc----c------------------C-c-ccCCHHHHHhhCCE
Confidence 5899999999999999999987 999999998543211 0 0 1 12467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|..... ..-+..+. -+.....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 174 V~l~~Plt~~g-------~~~T~~li--~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 227 (381)
T 3oet_A 174 LTFHTPLYKDG-------PYKTLHLA--DETLIRRLKPGAILINACRGPVVDNAALLARLNAG 227 (381)
T ss_dssp EEECCCCCCSS-------TTCCTTSB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCcCCccc-------cccchhhc--CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999853220 00011111 13455678999999999998877778888888764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-07 Score=88.97 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=73.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.++|..|+.+ |. +|+++|+++++++.... .+....... ...+++.+++. +++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~--------DL~~~~~~~~~~~~v~~~~~~-~a~~~ 69 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ--DVAKEVVMVDIKDGMPQGKAL--------DMRESSPIHGFDTRVTGTNDY-GPTED 69 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSSEEEEECSSTTHHHHHHH--------HHHHHHHHHTCCCEEEEESSS-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCchHHHHHHHH--------HHhccccccCCCcEEEECCCH-HHhCC
Confidence 8999999999999999999987 65 99999999987664321 011110000 11234445554 56999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||+|.+.|.... ..+.| ...+++..+.+.++. ++.++++ -|.|..+.-.
T Consensus 70 aDvVii~ag~~~kpG----~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~viv-vtNPvd~~t~ 126 (314)
T 3nep_X 70 SDVCIITAGLPRSPG----MSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIV-VANPLDVMTY 126 (314)
T ss_dssp CSEEEECCCC-----------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEE-CCSSHHHHHH
T ss_pred CCEEEECCCCCCCCC----CCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEe-cCCchhHHHH
Confidence 999999999886441 11222 344556666777765 4555544 3567766444
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=94.48 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=77.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++.. ..+ .. ..++++.++.||+
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~---~~g--------------------~~-~~~l~ell~~aDv 170 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGL--GWKVLVCDPPRQAR---EPD--------------------GE-FVSLERLLAEADV 170 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHH---STT--------------------SC-CCCHHHHHHHCSE
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCChhhh---ccC--------------------cc-cCCHHHHHHhCCE
Confidence 6899999999999999999987 99999999866432 111 01 2467788899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..-+..+. -+...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 171 V~l~~Plt~~g-------~~~T~~li--~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g 224 (380)
T 2o4c_A 171 ISLHTPLNRDG-------EHPTRHLL--DEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG 224 (380)
T ss_dssp EEECCCCCSSS-------SSCCTTSB--CHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEeccCcccc-------ccchhhhc--CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99998854320 00011111 13456778999999999988777777888888764
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=93.86 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=77.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.. + .. .... .++++.++.||+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~-~~-------------------~~~~-~~l~ell~~aDv 201 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGM--GATVIGEDVFEIKG--I-ED-------------------YCTQ-VSLDEVLEKSDI 201 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCS--C-TT-------------------TCEE-CCHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCccHH--H-Hh-------------------cccc-CCHHHHHhhCCE
Confidence 5899999999999999999987 99999999975421 1 00 1222 377888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ ..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 202 V~~~~p~t~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g 251 (331)
T 1xdw_A 202 ITIHAPYIKENGA-----VVT--------RDFLKKMKDGAILVNCARGQLVDTEAVIEAVESG 251 (331)
T ss_dssp EEECCCCCTTTCC-----SBC--------HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCchHHHH-----HhC--------HHHHhhCCCCcEEEECCCcccccHHHHHHHHHhC
Confidence 9999985322111 111 3445678999999999988777777888888764
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-06 Score=84.59 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=77.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC---CCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD---QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|++|.+++..|+.+....++.++|+++++++..... ..++. ..-+++. ++ .+++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~-----------~~~~v~~-~~-~~a~~~ 67 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFA-----------HPVWVWA-GS-YGDLEG 67 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGS-----------CCCEEEE-CC-GGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhc-----------CCeEEEE-CC-HHHhCC
Confidence 79999999999999999999873336899999999887653321 01110 0112333 34 556999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+||++.+.|... + ..+.| ...+++..+.+.++. ++.++++- |.|.++...+
T Consensus 68 aD~Vii~ag~~~~~-g---~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~~ 125 (310)
T 2xxj_A 68 ARAVVLAAGVAQRP-G---ETRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLVA-TNPVDVMTQV 125 (310)
T ss_dssp EEEEEECCCCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-SSSHHHHHHH
T ss_pred CCEEEECCCCCCCC-C---cCHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe-cCchHHHHHH
Confidence 99999999887643 1 11123 445666677777775 45555553 7888876543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=77.10 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=53.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|+|+|+|+|.||..++..|.+. | ++|+++|+++++.+.+......... ..+.-..+..++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~~~~~~~~~~~~~~~~------------~d~~~~~~~~~~~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDLAALAVLNRMGVATKQ------------VDAKDEAGLAKALGGF 70 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCHHHHHHHHTTTCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhCCCcEEE------------ecCCCHHHHHHHHcCC
Confidence 47899999999999999999998 8 9999999999998887732211110 0010112344556789
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||.|+|
T Consensus 71 d~vi~~~~ 78 (118)
T 3ic5_A 71 DAVISAAP 78 (118)
T ss_dssp SEEEECSC
T ss_pred CEEEECCC
Confidence 99999986
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=87.70 Aligned_cols=114 Identities=24% Similarity=0.333 Sum_probs=76.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHc---CCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNS---DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~---~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.+|.+++..|+.+ +. ++.++|+++++++.... ...++ ...++++.+..+++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~--~~~~el~L~Di~~~~~~g~~~dl~~~~~~-------------~~~~~i~~~~~~a~ 74 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLSNALPF-------------TSPKKIYSAEYSDA 74 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGG-------------SCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHhHHHHHHHHHHHHh-------------cCCeEEEECCHHHh
Confidence 7999999999999999999987 54 89999999988765332 11111 02334444446679
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++.+.|... | ..+.|+ ..+++..+.+.++. ++.+|++- |.|.++...
T Consensus 75 ~~aDvVii~ag~~~k~-g---~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~ 133 (326)
T 2zqz_A 75 KDADLVVITAGAPQKP-G---ETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA-ANPVDILTY 133 (326)
T ss_dssp GGCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEEC-SSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCcHHHHHH
Confidence 9999999999887543 1 112233 45666777777775 45555553 788887544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.8e-07 Score=84.28 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=67.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||..++..|.+. |++| .+||+++ +. . . ..+|+++.+ .++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~--g~~lv~v~d~~~-~~-----~-------------------~--~~~~~~~l~~~~~ 51 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN--GFEIAAILDVRG-EH-----E-------------------K--MVRGIDEFLQREM 51 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSC-CC-----T-------------------T--EESSHHHHTTSCC
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEEEecCc-ch-----h-------------------h--hcCCHHHHhcCCC
Confidence 7999999999999999999865 8997 6899863 11 0 1 456788877 689
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH---HHHHHHHHhc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~ 144 (480)
|+|++|+|... ..+.+...++.|..|+.+||...... +++.+..++.
T Consensus 52 DvVv~~~~~~~------------------~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~ 101 (236)
T 2dc1_A 52 DVAVEAASQQA------------------VKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKT 101 (236)
T ss_dssp SEEEECSCHHH------------------HHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHH
T ss_pred CEEEECCCHHH------------------HHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhc
Confidence 99999987421 12223344567888888887654433 4565555544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=85.38 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=77.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcC---CCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSD---QLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.|||+|||+|.||.++|..|+.+ |. +|.++|+++++++..... ..++. ....+..++|++ +
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-----------~~~~i~~~~d~~-~ 84 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMK--DLADELALVDVIEDKLKGEMMDLQHGSLFL-----------KTPKIVSSKDYS-V 84 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHHHHHTGGGC-----------SCCEEEECSSGG-G
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEeCChHHHHHHHHhhhhhhhcc-----------CCCeEEEcCCHH-H
Confidence 37999999999999999999987 65 899999999877763321 00110 012355677886 4
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+++||+||+|...|.... ..+.|+ ..+++..+.|.++. ++.++++ -|.|..+.-
T Consensus 85 ~~~aDiVvi~aG~~~kpG----~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlv-vtNPvdi~t 143 (331)
T 4aj2_A 85 TANSKLVIITAGARQQEG----ESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLI-VSNPVDILT 143 (331)
T ss_dssp GTTEEEEEECCSCCCCTT----CCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHH
T ss_pred hCCCCEEEEccCCCCCCC----ccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-ecChHHHHH
Confidence 999999999998875431 123343 44556667777774 4555544 356776543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-07 Score=80.83 Aligned_cols=70 Identities=13% Similarity=0.309 Sum_probs=57.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|... |++|+++|+++++.+.+.+.. .......++..++++++|+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNIDHVRAFAEKY----------------EYEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCHHHHHHHHHHH----------------TCEEEECSCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHHh----------------CCceEeecCHHHHhcCCCE
Confidence 6899999999999999999887 889999999999988765420 0123456778888899999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|.+
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99998865
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=91.56 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=59.4
Q ss_pred cEEEEECCChh-HHHHHHHHHHc--C-CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYV-GGPTMAVIALK--C-PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~--~-~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.+ |.++|..|+.+ . ++++|.+||+++++++.++.-. +.++.. ....++++++|+++++
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~--------~~~l~~~~~~~~I~~t~D~~eal 100 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGAC--------DVFIREKAPDIEFAATTDPEEAF 100 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHH--------HHHHHHHCTTSEEEEESCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHH--------HHHhccCCCCCEEEEECCHHHHH
Confidence 39999999999 66678777765 2 2679999999999988765310 111111 1134688889998889
Q ss_pred ccCcEEEEeccCCC
Q 011641 77 SEADIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||+++|++.
T Consensus 101 ~~AD~VViaag~~~ 114 (472)
T 1u8x_X 101 TDVDFVMAHIRVGK 114 (472)
T ss_dssp SSCSEEEECCCTTH
T ss_pred cCCCEEEEcCCCcc
Confidence 99999999998753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-07 Score=86.27 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=69.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|++. |++|+++|+++++.+.+.+.. ++.+.+++.++++++|+
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~--g~~V~v~~r~~~~~~~l~~~~------------------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKE--GAKVFLWNRTKEKAIKLAQKF------------------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSHHHHHHHTTTS------------------CEEECSCGGGTGGGCSE
T ss_pred CEEEEECchHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHc------------------CCeeehhHHhhhcCCCE
Confidence 6899999999999999999998 889999999999988876421 24455577777889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||.|+|.+...+ ... .+ . .+.++++++|++.++
T Consensus 190 Vi~atp~~~~~~------~~~--~i----~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 190 IVNTTSVGLKDE------DPE--IF----N--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp EEECSSTTSSTT------CCC--SS----C--GGGCCTTSEEEESSS
T ss_pred EEEeCCCCCCCC------CCC--CC----C--HHHcCCCCEEEEcCC
Confidence 999998654210 000 01 0 245778999988776
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=85.66 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=73.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |. ++.++|+++++++.......+.. + .. ...+++++..+++++|
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~-~--------~~-~~~~i~~~~~~a~~~a 77 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDAL-P--------FT-SPKKIYSAEYSDAKDA 77 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTG-G--------GS-CCCEEEECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhhh-h--------hc-CCcEEEECcHHHhcCC
Confidence 7999999999999999999987 65 89999999998775432100000 0 00 1344444445569999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+||++.+.|..... .+.| ...+++..+.+.++.+ +.++++- |.|..+..
T Consensus 78 DiVvi~ag~~~kpG~----tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvv-tNPvdi~t 132 (326)
T 3vku_A 78 DLVVITAGAPQKPGE----TRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVA-ANPVDILT 132 (326)
T ss_dssp SEEEECCCCC--------------------CHHHHHHHHHTTTC-CSEEEEC-SSSHHHHH
T ss_pred CEEEECCCCCCCCCc----hHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEc-cCchHHHH
Confidence 999999988754311 1222 3445677777777665 5555443 56776543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-06 Score=84.26 Aligned_cols=119 Identities=21% Similarity=0.240 Sum_probs=79.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHh-hhcCCCEEEecCHHHhhccCc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (480)
||+|||+|.||.++|..++.+ |+ +|.++|+++++++..... +.+... .....+++.++|+ +++++||
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~--~l~el~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~aD 69 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR--GYDDLLLIARTPGKPQGEALD--------LAHAAAELGVDIRISGSNSY-EDMRGSD 69 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred CEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCChhhHHHHHHH--------HHHhhhhcCCCeEEEECCCH-HHhCCCC
Confidence 799999999999999999987 66 799999998877653221 111100 0012357777887 5699999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+||++.+.|.... .++ .-+...+++.++.+.++. ++.++++- |.|.+....+
T Consensus 70 ~Vi~~ag~~~k~G---~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~~ 125 (308)
T 2d4a_B 70 IVLVTAGIGRKPG---MTREQLLEANANTMADLAEKIKAYA-KDAIVVIT-TNPVDAMTYV 125 (308)
T ss_dssp EEEECCSCCCCSS---CCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHHH
T ss_pred EEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCchHHHHHH
Confidence 9999998876431 010 112334566777777776 56655553 6787765443
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=86.94 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=57.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
|+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. +....+|+++.++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~------------------g~~~~~~~~~~l~~~ 64 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAAN-PDLELVVIADPFIEGAQRLAEAN------------------GAEAVASPDEVFARD 64 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHTT------------------TCEEESSHHHHTTCS
T ss_pred ceEEEEECCcHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc------------------CCceeCCHHHHhcCC
Confidence 36899999999999999999875 578876 7999999988776521 2466789999887
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 65 ~~D~V~i~tp~~ 76 (344)
T 3euw_A 65 DIDGIVIGSPTS 76 (344)
T ss_dssp CCCEEEECSCGG
T ss_pred CCCEEEEeCCch
Confidence 899999998754
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=86.47 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=55.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
|+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+. .++. .+|+++.++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~------------------~~~~-~~~~~~~l~~~ 62 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGN-ADARLVAVADAFPAAAEAIAGA------------------YGCE-VRTIDAIEAAA 62 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH------------------TTCE-ECCHHHHHHCT
T ss_pred ceEEEEECCCHHHHHHHHHHhhC-CCcEEEEEECCCHHHHHHHHHH------------------hCCC-cCCHHHHhcCC
Confidence 46999999999999999999875 578877 699999998877642 1234 678888777
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 63 ~~D~V~i~tp~~ 74 (331)
T 4hkt_A 63 DIDAVVICTPTD 74 (331)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCCch
Confidence 799999998754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=84.31 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=70.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+++++.+.+.+.. ....-..++++.++++|+
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~g-----------------~~~~~~~~l~~~l~~aDv 218 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEMG-----------------LVPFHTDELKEHVKDIDI 218 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT-----------------CEEEEGGGHHHHSTTCSE
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC-----------------CeEEchhhHHHHhhCCCE
Confidence 5899999999999999999987 899999999998776654310 011112466777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|... .+ +.....++++.++|+.+..+.++
T Consensus 219 Vi~~~p~~~----------i~--------~~~~~~mk~g~~lin~a~g~~~~ 252 (300)
T 2rir_A 219 CINTIPSMI----------LN--------QTVLSSMTPKTLILDLASRPGGT 252 (300)
T ss_dssp EEECCSSCC----------BC--------HHHHTTSCTTCEEEECSSTTCSB
T ss_pred EEECCChhh----------hC--------HHHHHhCCCCCEEEEEeCCCCCc
Confidence 999988532 11 12346688899999988766555
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=83.78 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=70.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCC--eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|||+|.||..+|..++.+ |+ +|.++|++++ ..... .++.. ....+++.++|+ +++++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~~-~~g~a-----------~dl~~-~~~~~i~~t~d~-~~l~~ 77 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSEG-TKGAT-----------MDLEI-FNLPNVEISKDL-SASAH 77 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC------CH-----------HHHHH-HTCTTEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCcc-hHHHH-----------HHHhh-hcCCCeEEeCCH-HHHCC
Confidence 57999999999999999999988 77 9999999985 21100 01111 112367888898 56999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+++..+ .. | .++ .-+...+.++++.+.++. ++.++++ -|.|...
T Consensus 78 aD~Vi~aag~~-~p-G--~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~sNP~~~ 130 (303)
T 2i6t_A 78 SKVVIFTVNSL-GS-S--QSYLDVVQSNVDMFRALVPALGHYS-QHSVLLV-ASQPVEI 130 (303)
T ss_dssp CSEEEECCCC--------CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEE-CSSSHHH
T ss_pred CCEEEEcCCCC-CC-C--CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-cCChHHH
Confidence 99999998654 11 1 000 112334566777788776 5666655 3556554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.1e-07 Score=87.49 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=54.4
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+.. ++...+|+++.++++
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~------------------~~~~~~~~~~ll~~~ 67 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-ERFEFVGAFTPNKVKREKICSDY------------------RIMPFDSIESLAKKC 67 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-SSSEEEEEECSCHHHHHHHHHHH------------------TCCBCSCHHHHHTTC
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHHhcC
Confidence 68999999999996 88888764 478877 7999999988776420 112267888888899
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 68 D~V~i~tp~~ 77 (308)
T 3uuw_A 68 DCIFLHSSTE 77 (308)
T ss_dssp SEEEECCCGG
T ss_pred CEEEEeCCcH
Confidence 9999998854
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-06 Score=83.14 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=69.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE--ecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~~a 79 (480)
++|+|||+|.||..+|..+... |.+|+++|+++++.+.+.+. + .+. ..++++.++++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g-~~~~~~~~l~~~l~~a 214 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIAEM------------------G-MEPFHISKAAQELRDV 214 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT------------------T-SEEEEGGGHHHHTTTC
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC------------------C-CeecChhhHHHHhcCC
Confidence 5899999999999999999987 89999999999876655431 1 111 24567778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+|++|+|... .+ . .....++++.++|+.+..+.++
T Consensus 215 DvVi~~~p~~~----------i~----~----~~l~~mk~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 215 DVCINTIPALV----------VT----A----NVLAEMPSHTFVIDLASKPGGT 250 (293)
T ss_dssp SEEEECCSSCC----------BC----H----HHHHHSCTTCEEEECSSTTCSB
T ss_pred CEEEECCChHH----------hC----H----HHHHhcCCCCEEEEecCCCCCC
Confidence 99999987432 11 1 1234578899999988766555
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=87.00 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=56.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
||||+|||+|.||..++..|.+. ++++++ ++|+++++.+.+.+.. +..+..+|+++.++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~ 63 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMI-DDAILYAISDVREDRLREMKEKL-----------------GVEKAYKDPHELIEDP 63 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGS-TTEEEEEEECSCHHHHHHHHHHH-----------------TCSEEESSHHHHHHCT
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHh-----------------CCCceeCCHHHHhcCC
Confidence 46999999999999999999874 578876 6899999988765420 11246788888777
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 64 ~~D~V~i~tp~~ 75 (344)
T 3ezy_A 64 NVDAVLVCSSTN 75 (344)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEcCCCc
Confidence 799999998753
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.9e-07 Score=76.52 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=69.0
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.||..++.+|.+. |++|+.++.+.+.+ .++++..+++++.+
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~--G~~V~~vnp~~~~i------------------------~G~~~~~s~~el~~ 68 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK 68 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC--CCEEEEeCCCCCeE------------------------CCeeecCCHHHhCC
Confidence 57999999 99999999999998 99866655532111 13566778888667
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
.+|++++|+|. ..+.++++++.+ ...+.+++..||. .+++.+..++.+
T Consensus 69 ~vDlvii~vp~---------------~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~G 116 (138)
T 1y81_A 69 DVDVIVFVVPP---------------KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAG 116 (138)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHT
T ss_pred CCCEEEEEeCH---------------HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCC
Confidence 89999999983 235666776665 4456677765553 466666666543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.9e-06 Score=81.27 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=76.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..|+.+..-.++.++|+++++.+..... +....... ...++..++|+++ +++||
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D--------L~h~~~~~~~~~~i~~~~d~~~-~~~aD 71 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGADYSL-LKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH--------HHHHHGGGTCCCEEEEESCGGG-GTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh--------hhcccccCCCCCeEecCCCHHH-hCCCC
Confidence 89999999999999999988762224899999998765532210 11100000 1123566778764 99999
Q ss_pred EEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|+++-..|..+.. .+.| .+.+++..++|.++.+ +.++++ -|.|..+.-.
T Consensus 72 vVvitAG~prkpGm----tR~dLl~~Na~I~~~i~~~i~~~~p-~aivlv-vsNPvd~~t~ 126 (294)
T 2x0j_A 72 IIVVTAGLARKPGM----TRLDLAHKNAGIIKDIAKKIVENAP-ESKILV-VTNPMDVMTY 126 (294)
T ss_dssp EEEECCCCCCCSSS----CHHHHHHHHHHHHHHHHHHHHTTST-TCEEEE-CSSSHHHHHH
T ss_pred EEEEecCCCCCCCC----chHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE-ecCcchhhHH
Confidence 99999887765421 1222 3444556667777765 444433 3677766433
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-06 Score=86.43 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=56.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
++||+|||+|.||..++..|.+..++++++ ++|+++++.+.+.+. .++...+|+++.++
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~ 74 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER------------------TGARGHASLTDMLAQT 74 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------HCCEEESCHHHHHHHC
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH------------------cCCceeCCHHHHhcCC
Confidence 368999999999999999998753477865 889999998876642 12467789998776
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 75 ~~D~V~i~tp~~ 86 (354)
T 3q2i_A 75 DADIVILTTPSG 86 (354)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEECCCcH
Confidence 799999998854
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.8e-06 Score=82.92 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=78.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEECC----HHHHHH----HHcCCCCCcCCChHHHHhhhcCCC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDIS----VSRINA----WNSDQLPIYEPGLDGVVKQCRGKN 65 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~----~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~ 65 (480)
|||+|+|+ |.+|.+++..|+.+ |+ +|.++|++ +++.+. +.....++ .+.
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~--~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-------------~~~ 70 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG--DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-------------LAG 70 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-------------EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-------------cCc
Confidence 79999997 99999999999987 64 89999999 655543 33321111 124
Q ss_pred EEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCC-----CChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 66 LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKA-----ADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 66 l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~-----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
++.+++..+++++||+||++...|.... ... .+...+++.++.+.++..++.++++.| .|.++...+
T Consensus 71 i~~~~~~~~al~~aD~Vi~~ag~~~~~g----~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S-NPv~~~t~~ 142 (329)
T 1b8p_A 71 MTAHADPMTAFKDADVALLVGARPRGPG----MERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG-NPANTNAYI 142 (329)
T ss_dssp EEEESSHHHHTTTCSEEEECCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHHHHH
T ss_pred EEEecCcHHHhCCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc-CchHHHHHH
Confidence 6778898888999999999988765321 011 122345566677777754555665544 777765443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.3e-06 Score=73.59 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=36.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|+|+|.+|..+|..|.+. |++|+++|+++++++.++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~ 59 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLN 59 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence 6899999999999999999998 899999999999887665
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=86.35 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=54.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh--cc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--SE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~ 78 (480)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. ++...+|+++.+ .+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~~l~~~~ 66 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-EKLKLVTCYSRTEDKREKFGKRY------------------NCAGDATMEALLARED 66 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEECSSHHHHHHHHHHH------------------TCCCCSSHHHHHHCSS
T ss_pred ceEEEEccCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHhcCCC
Confidence 5899999999999999999875 578865 7899999988765420 123357888877 56
Q ss_pred CcEEEEeccCCC
Q 011641 79 ADIVFVSVNTPT 90 (480)
Q Consensus 79 aDvVii~Vptp~ 90 (480)
+|+|++|+|+..
T Consensus 67 ~D~V~i~tp~~~ 78 (354)
T 3db2_A 67 VEMVIITVPNDK 78 (354)
T ss_dssp CCEEEECSCTTS
T ss_pred CCEEEEeCChHH
Confidence 999999988653
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=84.18 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=56.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCC-CEEEecCHHHhhcc-
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK-NLFFSTDVEKHVSE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||..++..|.++.++++++ ++|+++++.+.+.+.. + .....+|+++.+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~ll~~~ 65 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-----------------QLNATVYPNDDSLLADE 65 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-----------------TCCCEEESSHHHHHHCT
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence 69999999999999999998333578866 7899999988776421 1 14667899988765
Q ss_pred -CcEEEEeccCC
Q 011641 79 -ADIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 66 ~~D~V~i~tp~~ 77 (344)
T 3mz0_A 66 NVDAVLVTSWGP 77 (344)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEECCCch
Confidence 89999998754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=72.26 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=39.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
|++|.|+|+|.+|..+|..|.++ |++|+++|+++++++.+.+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~ 48 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE 48 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC
Confidence 35799999999999999999998 99999999999999988753
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=87.22 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=57.4
Q ss_pred cEEEEECCChh--HHHHHHHHHHcC--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYV--GGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~--G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.| |..++..|+... .| +|++||+++++++.++.-...+.. ...++++|+|++++++
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~----------~~~~I~~TtD~~eAl~ 74 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGN----------GRWRYEAVSTLKKALS 74 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTT----------SCEEEEEESSHHHHHT
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhc----------cCCeEEEECCHHHHhc
Confidence 59999999996 688998888621 26 999999999887765431111111 1236889999999999
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||++++.
T Consensus 75 dADfVI~airv 85 (450)
T 3fef_A 75 AADIVIISILP 85 (450)
T ss_dssp TCSEEEECCCS
T ss_pred CCCEEEecccc
Confidence 99999999973
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=83.37 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=71.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
+|+|||+|.||.++|..|.+. |++|+++|+++++.+.+.+.. + .. .++++++ +++|+|
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~--g~~v~v~~r~~~~~~~l~~~~-----------------~-~~-~~~~~~~-~~~Div 175 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREA--GLEVWVWNRTPQRALALAEEF-----------------G-LR-AVPLEKA-REARLL 175 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH-----------------T-CE-ECCGGGG-GGCSEE
T ss_pred eEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-----------------c-cc-hhhHhhc-cCCCEE
Confidence 699999999999999999988 889999999998887765310 1 12 3466776 899999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|+|+|.+... +.. ..+. .+.++++++|++.++.+..+ + +.+..++
T Consensus 176 i~~tp~~~~~---------~~~---~~l~--~~~l~~g~~viD~~~~p~~t-~-l~~~a~~ 220 (263)
T 2d5c_A 176 VNATRVGLED---------PSA---SPLP--AELFPEEGAAVDLVYRPLWT-R-FLREAKA 220 (263)
T ss_dssp EECSSTTTTC---------TTC---CSSC--GGGSCSSSEEEESCCSSSSC-H-HHHHHHH
T ss_pred EEccCCCCCC---------CCC---CCCC--HHHcCCCCEEEEeecCCccc-H-HHHHHHH
Confidence 9999865321 000 0011 34577889998887765544 3 4444444
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.4e-06 Score=83.86 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=74.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|....+..+|++||+++++.+++.+.... .++ -.+...++++++++++|+
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~--~~g----------~~~~~~~~~~eav~~aDi 197 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YSG----------LTIRRASSVAEAVKGVDI 197 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CTT----------CEEEECSSHHHHHTTCSE
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh--ccC----------ceEEEeCCHHHHHhcCCE
Confidence 58999999999999998886532357999999999999887642100 000 124567888898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|++... +- +. ...+++++.|+..+|..|+.
T Consensus 198 Vi~aTps~~~~--------pv-------l~--~~~l~~G~~V~~vgs~~p~~ 232 (350)
T 1x7d_A 198 ITTVTADKAYA--------TI-------IT--PDMLEPGMHLNAVGGDCPGK 232 (350)
T ss_dssp EEECCCCSSEE--------EE-------EC--GGGCCTTCEEEECSCCBTTB
T ss_pred EEEeccCCCCC--------ce-------ec--HHHcCCCCEEEECCCCCCCc
Confidence 99998864211 00 00 24678899999989887774
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.23 E-value=6e-06 Score=82.47 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=54.3
Q ss_pred CcEEEEECCChhHHHHHHHHH-HcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
++||+|||+|.||..++..|. +. +++++ .++|+++++.+.+.+.. +...+.+|+++.++
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~-~~~~~vav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~ 69 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKI-QGVKLVAACALDSNQLEWAKNEL-----------------GVETTYTNYKDMIDT 69 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTC-SSEEEEEEECSCHHHHHHHHHTT-----------------CCSEEESCHHHHHTT
T ss_pred cceEEEEcCCHHHHHHHHHHHhcC-CCcEEEEEecCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcC
Confidence 378999999999999999988 43 47775 57899999987765421 11145678888775
Q ss_pred -cCcEEEEeccCC
Q 011641 78 -EADIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 70 ~~~D~V~i~tp~~ 82 (346)
T 3cea_A 70 ENIDAIFIVAPTP 82 (346)
T ss_dssp SCCSEEEECSCGG
T ss_pred CCCCEEEEeCChH
Confidence 699999998753
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=87.18 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=59.1
Q ss_pred cEEEEECCChh-HHHHHHHHHH--cC-CCCeEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHH
Q 011641 2 VKICCIGAGYV-GGPTMAVIAL--KC-PSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~--~~-~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~ 74 (480)
|||+|||+|.+ |.+++..|+. .. ++++|.+||+++ ++++.++.-. +.++.. ....+++.++|+.+
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~--------~~~~~~~~~~~~i~~t~D~~e 79 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--------KRMVEKAGVPIEIHLTLDRRR 79 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--------HHHHHHTTCCCEEEEESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHH--------HHHHhhcCCCcEEEEeCCHHH
Confidence 69999999999 8888888886 21 257899999999 8877754210 111111 11235788899988
Q ss_pred hhccCcEEEEeccCCC
Q 011641 75 HVSEADIVFVSVNTPT 90 (480)
Q Consensus 75 a~~~aDvVii~Vptp~ 90 (480)
++++||+||+++|.+.
T Consensus 80 al~gAD~VVitagv~~ 95 (450)
T 1s6y_A 80 ALDGADFVTTQFRVGG 95 (450)
T ss_dssp HHTTCSEEEECCCTTH
T ss_pred HhCCCCEEEEcCCCCC
Confidence 8999999999998753
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.3e-06 Score=71.78 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=52.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHH-hhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEK-HVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
++|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+++...+.. +....+. +++ .+.+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~--------------l~~a~i~~ 71 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRERGVRAVLGNAANEEI--------------MQLAHLEC 71 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHH--------------HHHTTGGG
T ss_pred CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHH--------------HHhcCccc
Confidence 4799999999999999999998 9999999999999998876322211 1111111 111 2568
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|++|+|+|+
T Consensus 72 ad~vi~~~~~ 81 (140)
T 3fwz_A 72 AKWLILTIPN 81 (140)
T ss_dssp CSEEEECCSC
T ss_pred CCEEEEECCC
Confidence 9999999875
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=84.94 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=54.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. +..+..+|+++.+. +
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~~ 67 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-AQAEVRGIASRRLENAQKMAKEL-----------------AIPVAYGSYEELCKDET 67 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-SSEEEEEEBCSSSHHHHHHHHHT-----------------TCCCCBSSHHHHHHCTT
T ss_pred EEEEEECchHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHc-----------------CCCceeCCHHHHhcCCC
Confidence 5899999999999999999885 477876 6899999888766421 11134678888776 7
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 68 ~D~V~i~tp~~ 78 (330)
T 3e9m_A 68 IDIIYIPTYNQ 78 (330)
T ss_dssp CSEEEECCCGG
T ss_pred CCEEEEcCCCH
Confidence 99999998854
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=76.19 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=67.6
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.||..++.+|.+. |++|+.++.+. . +. .+ .++++..+++++..
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~--G~~v~~vnp~~--~-----g~-~i--------------~G~~~~~sl~el~~ 69 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ--GYHVIPVSPKV--A-----GK-TL--------------LGQQGYATLADVPE 69 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH--TCCEEEECSSS--T-----TS-EE--------------TTEECCSSTTTCSS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC--CCEEEEeCCcc--c-----cc-cc--------------CCeeccCCHHHcCC
Confidence 47999999 89999999999998 89876666543 1 00 00 13566667777667
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
.+|++++|+|.+ .+.++++++.+ ...+.+++..||. .+++.+..++.+
T Consensus 70 ~~Dlvii~vp~~---------------~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~G 117 (145)
T 2duw_A 70 KVDMVDVFRNSE---------------AAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAG 117 (145)
T ss_dssp CCSEEECCSCST---------------HHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTT
T ss_pred CCCEEEEEeCHH---------------HHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcC
Confidence 899999999832 34666666665 3445666654444 456666666543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=83.05 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=52.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+|||+|||+|.||..++..|.+. +++++ .++|+++++.+.+.+. +...+|++++++
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~-~~~~~v~v~d~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~ 68 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGL-PGAALVRLASSNPDNLALVPPG--------------------CVIESDWRSVVSAP 68 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHC-TTEEEEEEEESCHHHHTTCCTT--------------------CEEESSTHHHHTCT
T ss_pred cceEEEECCcHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHhh--------------------CcccCCHHHHhhCC
Confidence 36899999999999999999875 46775 5899999876543321 345677888775
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 69 ~~D~V~i~tp~~ 80 (315)
T 3c1a_A 69 EVEAVIIATPPA 80 (315)
T ss_dssp TCCEEEEESCGG
T ss_pred CCCEEEEeCChH
Confidence 799999998753
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.6e-06 Score=81.66 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=52.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+...+. ++...+|+++.++ +
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~a~~~-------------------g~~~~~~~~~ll~~~~ 65 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-DNLEVHGVFDILAEKREAAAQK-------------------GLKIYESYEAVLADEK 65 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-TTEEEEEEECSSHHHHHHHHTT-------------------TCCBCSCHHHHHHCTT
T ss_pred CcEEEECcCHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHhc-------------------CCceeCCHHHHhcCCC
Confidence 4799999999999999988875 578876 679999987654321 2345578888776 7
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 66 ~D~V~i~tp~~ 76 (359)
T 3e18_A 66 VDAVLIATPND 76 (359)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEEcCCcH
Confidence 89999998854
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=83.79 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=55.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCC-CEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK-NLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||..++..|..+.++++|+ ++|+++++.+.+.+.. + ..+..+|+++.++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~ll~~~ 86 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-----------------AIEAKDYNDYHDLINDK 86 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-----------------TCCCEEESSHHHHHHCT
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence 58999999999999999998433578866 7899999888766420 1 1466788888776
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 87 ~~D~V~i~tp~~ 98 (357)
T 3ec7_A 87 DVEVVIITASNE 98 (357)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEcCCcH
Confidence 589999998854
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.5e-06 Score=82.70 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=50.3
Q ss_pred CcEEEEECCChhHH-HHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-cc
Q 011641 1 MVKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~-~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~ 78 (480)
||||+|||+|.||. .++..|.+. ++++|+++|+++++.+.+.+.. +.-....+..+.+ .+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~-~~~~l~v~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~ 63 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYG 63 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGC
T ss_pred CcEEEEECCCHHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHc-----------------CCCccccCHHHHhhcC
Confidence 36999999999998 488888764 4788889999999988776421 0001012223345 68
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 64 ~D~V~i~tp~~ 74 (323)
T 1xea_A 64 VDAVMIHAATD 74 (323)
T ss_dssp CSEEEECSCGG
T ss_pred CCEEEEECCch
Confidence 99999998853
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=81.10 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=54.0
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||. .++..|.+. ++++|+ ++|+++++.+.+.+. -++...+|+++.++
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~~ll~~~ 88 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-PLTEVTAIASRRWDRAKRFTER------------------FGGEPVEGYPALLERD 88 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-TTEEEEEEEESSHHHHHHHHHH------------------HCSEEEESHHHHHTCT
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-CCeEEEEEEcCCHHHHHHHHHH------------------cCCCCcCCHHHHhcCC
Confidence 6899999999998 788888875 578876 789999988876542 02344588888775
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 89 ~~D~V~i~tp~~ 100 (350)
T 3rc1_A 89 DVDAVYVPLPAV 100 (350)
T ss_dssp TCSEEEECCCGG
T ss_pred CCCEEEECCCcH
Confidence 589999998854
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.5e-06 Score=69.62 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=37.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
++|.|+|+|.+|..++..|.+. |++|+++|+++++++.+.+
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~ 47 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS 47 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHTTTT
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4699999999999999999998 8999999999998877654
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=83.15 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=72.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+... |.+|++||+++.+. +....+ ++. .+++++++.||
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~--G~~Viv~d~~~~~~~~a~~~g--------------------~~~-~~l~ell~~aD 314 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVMEG--------------------FNV-VTLDEIVDKGD 314 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTTT--------------------CEE-CCHHHHTTTCS
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--cCEEEEEeCChhhHHHHHHcC--------------------CEe-cCHHHHHhcCC
Confidence 5899999999999999999987 99999999999875 332221 233 46888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc-hHHHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEK 139 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~ 139 (480)
+|++|+.|+. ..+ +...+.++++.++++.++.++. ..+.+.+
T Consensus 315 iVi~~~~t~~---------lI~--------~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 315 FFITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp EEEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred EEEECCChhh---------hcC--------HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 9999965431 111 2344668999999999887663 4455544
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.5e-06 Score=77.78 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=65.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|+|+|.||..++..+.+. ++++.+ +|++++. . .++.+++|+++.+ ++
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~--~~eLva~~d~~~~~-----~-------------------~gv~v~~dl~~l~-~~ 55 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK--GHEIVGVIENTPKA-----T-------------------TPYQQYQHIADVK-GA 55 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSCC--------------------------CCSCBCSCTTTCT-TC
T ss_pred ceEEEEECcCHHHHHHHHHHHhC--CCEEEEEEecCccc-----c-------------------CCCceeCCHHHHh-CC
Confidence 68999999999999999999987 447665 7887542 0 1234557777766 89
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|++|-+.. | ..+.+.+ . +..+.-+|+.+| |.+++-.+.+.+... ...++++|.+.
T Consensus 56 DVvIDft~-p-----------------~a~~~~~-~-l~~g~~vVigTT---G~s~e~~~~l~~aa~--~~~v~~a~N~S 110 (243)
T 3qy9_A 56 DVAIDFSN-P-----------------NLLFPLL-D-EDFHLPLVVATT---GEKEKLLNKLDELSQ--NMPVFFSANMS 110 (243)
T ss_dssp SEEEECSC-H-----------------HHHHHHH-T-SCCCCCEEECCC---SSHHHHHHHHHHHTT--TSEEEECSSCC
T ss_pred CEEEEeCC-h-----------------HHHHHHH-H-HhcCCceEeCCC---CCCHHHHHHHHHHHh--cCCEEEECCcc
Confidence 99885532 2 1222333 3 666665666555 333332233333321 24567888763
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=81.06 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=54.2
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.. ++..|.+. ++.+|+ ++|+++++.+.+.+.. +.....+|+++.++
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 67 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-QDIRIVAACDSDLERARRVHRFI-----------------SDIPVLDNVPAMLNQV 67 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-TTEEEEEEECSSHHHHGGGGGTS-----------------CSCCEESSHHHHHHHS
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCC
Confidence 58999999999985 88888764 578876 7899999988776531 12456788888776
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 68 ~vD~V~i~tp~~ 79 (359)
T 3m2t_A 68 PLDAVVMAGPPQ 79 (359)
T ss_dssp CCSEEEECSCHH
T ss_pred CCCEEEEcCCcH
Confidence 459999998753
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.5e-06 Score=83.50 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=70.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE---------EecCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF---------FSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~---------~t~d~ 72 (480)
.||+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+-...+.+...+. .. ..+..+ -..++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~lGa~~~~l~~~~-~~--~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSVGAQWLDLGIDA-AG--EGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHTTCEECCCC----------------CHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccc-cc--cccchhhhhHHHHhhhHHHH
Confidence 4899999999999999999888 8999999999998887775222111100000 00 000000 01346
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++.++++|+||.|+..|... .+-+ +.+...+.++++.+||+.|.
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~-------ap~L-----vt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRP-------APRL-----VTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSC-------CCCC-----BCHHHHHTSCTTCEEEETTG
T ss_pred HHHHhcCCEEEECCCCCCcc-------ccee-----ecHHHHhcCCCCcEEEEEeC
Confidence 67789999999997544321 1111 12456677889999998654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-06 Score=84.15 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=71.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-E-E--------ecC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-F-F--------STD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~-~--------t~d 71 (480)
.||+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+-...+.+...++.-.....+.. + . ..+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~ 268 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL 268 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhH
Confidence 4899999999999999999887 89999999999988887753222111000000000000000 0 0 124
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++++++++|+||.|+..|... .+.+ +.++..+.++++.+||+.|.
T Consensus 269 l~e~l~~aDVVI~tvlipg~~-------ap~L-----vt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRP-------APRL-----VTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSC-------CCCC-----BCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhcCCCEEEECCcCCCCC-------CCEE-----ecHHHHhcCCCCCEEEEEeC
Confidence 677789999999997555321 1221 12566778899999998764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=84.95 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=49.8
Q ss_pred CcEEEEECCChhHHHHHHH-HHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAV-IALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~-La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|||+|.||..+... +....++++|+ ++|+++++.+...+ .......+|+++.+.+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~------------------~~~~~~~~~~~~ll~~ 63 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPI------------------YSHIHFTSDLDEVLND 63 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGG------------------GTTCEEESCTHHHHTC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHh------------------cCCCceECCHHHHhcC
Confidence 4799999999999864433 42333578877 78998776532221 0235677899988765
Q ss_pred --CcEEEEeccCC
Q 011641 79 --ADIVFVSVNTP 89 (480)
Q Consensus 79 --aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 64 ~~~D~V~i~tp~~ 76 (345)
T 3f4l_A 64 PDVKLVVVCTHAD 76 (345)
T ss_dssp TTEEEEEECSCGG
T ss_pred CCCCEEEEcCChH
Confidence 89999998754
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.3e-06 Score=81.00 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=51.0
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+.. ++.+++++++...++
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~l~~~~ 66 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICESW------------------RIPYADSLSSLAASC 66 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHHH------------------TCCBCSSHHHHHTTC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCccCcHHHhhcCC
Confidence 68999999999996 88888764 478876 8999998877665410 112456666544689
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 67 D~V~i~tp~~ 76 (319)
T 1tlt_A 67 DAVFVHSSTA 76 (319)
T ss_dssp SEEEECSCTT
T ss_pred CEEEEeCCch
Confidence 9999998853
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.09 E-value=7e-06 Score=74.18 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=51.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHh--hc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKH--VS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a--~~ 77 (480)
++|.|+|+|.||..+|..|.+.+ |++|+++|+++++++.+.+...... +..-.+ .+.++ +.
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~--------------~l~~~~~~~ 104 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRSEGRNVISGDATDPD--------------FWERILDTG 104 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHHTTCCEEECCTTCHH--------------HHHTBCSCC
T ss_pred CcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHH--------------HHHhccCCC
Confidence 57999999999999999998731 6899999999999988875322211 100000 12233 56
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||+|+|.
T Consensus 105 ~ad~vi~~~~~ 115 (183)
T 3c85_A 105 HVKLVLLAMPH 115 (183)
T ss_dssp CCCEEEECCSS
T ss_pred CCCEEEEeCCC
Confidence 89999999774
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-06 Score=81.17 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=54.0
Q ss_pred CcEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.||.. ++..+... ++.+|+ ++|+++++.+++.+.. +-.++.+|+++.++
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~-~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~ell~~ 84 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDA-ENCVVTAIASRDLTRAREMADRF-----------------SVPHAFGSYEEMLAS 84 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHC-SSEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHHHHHHC
T ss_pred ccEEEEEcChHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc-----------------CCCeeeCCHHHHhcC
Confidence 689999999999975 45666654 577876 6899999988876520 11256789998774
Q ss_pred -cCcEEEEeccCCC
Q 011641 78 -EADIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 85 ~~iDaV~I~tP~~~ 98 (350)
T 4had_A 85 DVIDAVYIPLPTSQ 98 (350)
T ss_dssp SSCSEEEECSCGGG
T ss_pred CCCCEEEEeCCCch
Confidence 5899999988643
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-05 Score=80.08 Aligned_cols=67 Identities=21% Similarity=0.362 Sum_probs=51.0
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++++-. +..++.+|+++.++
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~ 66 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-PGLNLAFVASRDEEKVKRDL--------------------PDVTVIASPEAAVQHP 66 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESCHHHHHTCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCcEECCHHHHhcCC
Confidence 58999999999997 66666654 578875 7899998765211 23467789999877
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 67 ~~D~V~i~tp~~ 78 (364)
T 3e82_A 67 DVDLVVIASPNA 78 (364)
T ss_dssp TCSEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 789999998754
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=79.94 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=71.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..++..|+...+..+|.+||+++++.+++.+.. .. ..-.+. .+++++++ ++|+
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~------------~~-~~~~~~-~~~~~e~v-~aDv 190 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYC------------ED-RGISAS-VQPAEEAS-RCDV 190 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHH------------HH-TTCCEE-ECCHHHHT-SSSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHH------------Hh-cCceEE-ECCHHHHh-CCCE
Confidence 589999999999999999987423578999999999998876420 00 001245 67888888 9999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.... .+ ...++++++|+..++..|+.
T Consensus 191 Vi~aTp~~~pv--------~~-----------~~~l~~G~~V~~ig~~~p~~ 223 (322)
T 1omo_A 191 LVTTTPSRKPV--------VK-----------AEWVEEGTHINAIGADGPGK 223 (322)
T ss_dssp EEECCCCSSCC--------BC-----------GGGCCTTCEEEECSCCSTTC
T ss_pred EEEeeCCCCce--------ec-----------HHHcCCCeEEEECCCCCCCc
Confidence 99998753210 00 14678899998887776664
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=83.06 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=68.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+++.+....... +.+. .+++++++.||+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~--G~~V~v~d~~~~~~~~a~~~-------------------G~~~-~~l~ell~~aDi 335 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGL--GATVWVTEIDPICALQAAME-------------------GYRV-VTMEYAADKADI 335 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSCHHHHHHHHTT-------------------TCEE-CCHHHHTTTCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCChHhHHHHHHc-------------------CCEe-CCHHHHHhcCCE
Confidence 5899999999999999999877 99999999998864222211 1233 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
|++++.|+. ..+ +...+.++++.+|++.+..+.
T Consensus 336 Vi~~~~t~~---------lI~--------~~~l~~MK~gAilINvgrg~v 368 (494)
T 3d64_A 336 FVTATGNYH---------VIN--------HDHMKAMRHNAIVCNIGHFDS 368 (494)
T ss_dssp EEECSSSSC---------SBC--------HHHHHHCCTTEEEEECSSSSC
T ss_pred EEECCCccc---------ccC--------HHHHhhCCCCcEEEEcCCCcc
Confidence 999985532 111 234567899999999887655
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.6e-05 Score=75.66 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=72.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCC--eEEEEEC--CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSI--EVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|+| +|.+|.+++..|+.+ |+ ++.++|+ ++++++.... .+.+... .....+++.+..+++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~--~~~~el~L~Di~~~~~~~~~~~~--------dl~~~~~--~~~~~~v~~~~~~a~ 68 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA--YDSNTRVRQGGYEDT 68 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT--TTCCCEEEECCGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEcCCCChhhHHHHHH--------HHHHHHh--hCCCcEEEeCCHHHh
Confidence 7999999 999999999999886 54 7999999 8876543221 0111110 012233332335679
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++.+.|... + ....|+ ..+++.++.+.++. ++.+|++ +|.|.++...
T Consensus 69 ~~aDvVi~~ag~~~~~-g---~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv-~SNPv~~~~~ 127 (303)
T 1o6z_A 69 AGSDVVVITAGIPRQP-G---QTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLT-TSNPVDLLNR 127 (303)
T ss_dssp TTCSEEEECCCCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEE-CCSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-eCChHHHHHH
Confidence 9999999998876532 1 011121 33455555665553 4565555 6888877443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.04 E-value=8e-06 Score=76.10 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=38.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||.|+|+|.+|..+|..|.++ |++|+++|+++++++.+.+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~ 41 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAK 41 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 8999999999999999999998 9999999999999988764
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=78.93 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=55.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+|||+|||+|.||..++..|... +++++ .++|+++++.+.+.+... + .......+|+++.++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~-~~~~lv~v~d~~~~~~~~~a~~~~-~-------------~~~~~~~~~~~~ll~~~ 70 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN-Y-------------PESTKIHGSYESLLEDP 70 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT-C-------------CTTCEEESSHHHHHHCT
T ss_pred ceEEEEECchHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhC-C-------------CCCCeeeCCHHHHhcCC
Confidence 47899999999999999988875 46776 578999998877654210 0 002356788888775
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 71 ~~D~V~i~tp~~ 82 (362)
T 1ydw_A 71 EIDALYVPLPTS 82 (362)
T ss_dssp TCCEEEECCCGG
T ss_pred CCCEEEEcCChH
Confidence 589999998753
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.4e-05 Score=79.27 Aligned_cols=69 Identities=25% Similarity=0.240 Sum_probs=52.0
Q ss_pred cEEEEECCChhHHHH-HHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGPT-MAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
|||+|||+|.||..+ +..|.+. +++++ ++|+++++.+.+.+.. +.....+|+++.++
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~--~~~~vav~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~l~~~ 61 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT--GGEVVSMMSTSAERGAAYATEN-----------------GIGKSVTSVEELVGDP 61 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT--TCEEEEEECSCHHHHHHHHHHT-----------------TCSCCBSCHHHHHTCT
T ss_pred CeEEEEcccHHHHHhhhHHhhcC--CCeEEEEECCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 699999999999998 7777764 88866 7899999887765421 11123567787765
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 62 ~~D~V~i~tp~~ 73 (332)
T 2glx_A 62 DVDAVYVSTTNE 73 (332)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChh
Confidence 599999998753
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=80.17 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=51.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|||+|.||..++..|.+. ++.+|+ ++|+++++.+.+.+.. +..+..+|+++.+. +
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-~~~~~~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~~ 67 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-GNGEVVAVSSRTLESAQAFANKY-----------------HLPKAYDKLEDMLADES 67 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-CSEEEEEEECSCSSTTCC---CC-----------------CCSCEESCHHHHHTCTT
T ss_pred eEEEEEechHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCCC
Confidence 6899999999999999999875 356655 6799988765544320 11135688888877 7
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 68 ~D~V~i~tp~~ 78 (329)
T 3evn_A 68 IDVIYVATINQ 78 (329)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEECCCcH
Confidence 89999998854
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=7e-06 Score=81.08 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=68.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..++..|....+..+|++||++ +.+++.+. +-.+ ....+... ++++++++||+
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~-----------l~~~-~g~~~~~~-~~~eav~~aDI 186 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILER-----------IGRR-CGVPARMA-APADIAAQADI 186 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHH-----------HHHH-HTSCEEEC-CHHHHHHHCSE
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHH-----------HHHh-cCCeEEEe-CHHHHHhhCCE
Confidence 5799999999999999999874345789999998 44444321 0000 01234566 89999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|++. +- +. ...++++++|+..++..|+.
T Consensus 187 Vi~aT~s~~----------pv-------l~--~~~l~~G~~V~~vGs~~p~~ 219 (313)
T 3hdj_A 187 VVTATRSTT----------PL-------FA--GQALRAGAFVGAIGSSLPHT 219 (313)
T ss_dssp EEECCCCSS----------CS-------SC--GGGCCTTCEEEECCCSSTTC
T ss_pred EEEccCCCC----------cc-------cC--HHHcCCCcEEEECCCCCCch
Confidence 999987531 11 11 24688999998888877765
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-05 Score=79.17 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=53.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC--Ce-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS--IE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G--~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+||+|||+|.||..++..|.+. ++ ++ |.++|+++++.+.+.+.. +..+..+|+++.++
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~-~~~~~~l~av~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 63 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTL-PRSEHQVVAVAARDLSRAKEFAQKH-----------------DIPKAYGSYEELAK 63 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS-CTTTEEEEEEECSSHHHHHHHHHHH-----------------TCSCEESSHHHHHH
T ss_pred ccEEEEECchHHHHHHHHHHHhC-CCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 36999999999999999988765 22 34 556899999988776420 11135678888776
Q ss_pred --cCcEEEEeccCC
Q 011641 78 --EADIVFVSVNTP 89 (480)
Q Consensus 78 --~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 64 ~~~vD~V~i~tp~~ 77 (334)
T 3ohs_X 64 DPNVEVAYVGTQHP 77 (334)
T ss_dssp CTTCCEEEECCCGG
T ss_pred CCCCCEEEECCCcH
Confidence 699999998754
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6e-05 Score=74.26 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=72.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEECCHH---HHHHHHcCCCCCcCCChHHHHhhhcCCCEEE--ecCHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVS---RINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEK 74 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~---~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~ 74 (480)
|||+||| +|++|.++|..|+.+ ....++.++|+++. ....|+.. +. .-.++. +++..+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~--~~-------------~~~v~~~~~~~~~~ 65 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI--PT-------------AVKIKGFSGEDATP 65 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS--CS-------------SEEEEEECSSCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC--CC-------------CceEEEecCCCcHH
Confidence 8999999 899999999999874 22468999999871 12222221 10 012332 124445
Q ss_pred hhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 75 HVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
++++||+||++.+.|.... ..+. +.+.+++..+.|.++.+ +.++++- |.|..+.-.+
T Consensus 66 ~~~~aDivii~ag~~rkpG----~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvv-tNPvd~~t~~ 127 (312)
T 3hhp_A 66 ALEGADVVLISAGVARKPG----MDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGII-TNPVNTTVAI 127 (312)
T ss_dssp HHTTCSEEEECCSCSCCTT----CCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC-SSCHHHHHHH
T ss_pred HhCCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe-cCcchhHHHH
Confidence 6999999999998876441 1122 33445666677777754 5555443 6787775544
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=79.19 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=51.7
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|. .++..|... +++| .++|+++++.+.+.+.. +..++.+|+++.++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~--~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 65 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA--GAELAGVFESDSDNRAKFTSLF-----------------PSVPFAASAEQLITDA 65 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT--TCEEEEEECSCTTSCHHHHHHS-----------------TTCCBCSCHHHHHTCT
T ss_pred cEEEEECCChHHHHHhhhhhcCC--CcEEEEEeCCCHHHHHHHHHhc-----------------CCCcccCCHHHHhhCC
Confidence 6899999999996 677777654 8885 58899998877665421 12345678888775
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 66 ~~D~V~i~tp~~ 77 (336)
T 2p2s_A 66 SIDLIACAVIPC 77 (336)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChh
Confidence 689999998754
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-05 Score=75.68 Aligned_cols=87 Identities=16% Similarity=0.320 Sum_probs=53.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..++..|.+. +++++. ++|+++++.+. .| .+ ....+++.+ ..++|
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-~~~elvav~d~~~~~~~~--~g-~~-----------------~~~~~~l~~-~~~~D 67 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-PDFEIAGIVRRNPAEVPF--EL-QP-----------------FRVVSDIEQ-LESVD 67 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECC---------CC-TT-----------------SCEESSGGG-SSSCC
T ss_pred CEEEEECChHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHH--cC-CC-----------------cCCHHHHHh-CCCCC
Confidence 5899999999999999999874 578887 68999887654 11 11 112345444 37899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+.. -.+.+...++.+.-|++++.
T Consensus 68 vViiatp~~~------------------h~~~~~~al~aG~~Vi~ekP 97 (304)
T 3bio_A 68 VALVCSPSRE------------------VERTALEILKKGICTADSFD 97 (304)
T ss_dssp EEEECSCHHH------------------HHHHHHHHHTTTCEEEECCC
T ss_pred EEEECCCchh------------------hHHHHHHHHHcCCeEEECCC
Confidence 9999977421 12233344556777776654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.8e-05 Score=79.40 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=67.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|+++|+++++.+...+. +... .+++++++++|+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~~-------------------Ga~~-~~l~e~l~~aDv 332 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMME-------------------GFDV-VTVEEAIGDADI 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHGGGCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCEE-ecHHHHHhCCCE
Confidence 5799999999999999999887 89999999999887654431 1222 356677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
||.|++++.. .+ .+..+.++++.+|++.+...
T Consensus 333 Vi~atgt~~~---------i~--------~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 333 VVTATGNKDI---------IM--------LEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp EEECSSSSCS---------BC--------HHHHHHSCTTCEEEECSSSG
T ss_pred EEECCCCHHH---------HH--------HHHHHhcCCCcEEEEeCCCC
Confidence 9999876421 11 23445678899998876654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.4e-05 Score=73.60 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=72.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|..+..- |.+|++||+.+.... .. ..... .++++.++.||+
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~--~~-------------------~~~~~-~~l~ell~~sDi 197 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAF--GMKVLCYDVVKREDL--KE-------------------KGCVY-TSLDELLKESDV 197 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHH--HH-------------------TTCEE-CCHHHHHHHCSE
T ss_pred cEEEEECcchHHHHHHHhhccc--CceeeecCCccchhh--hh-------------------cCcee-cCHHHHHhhCCE
Confidence 4799999999999999998876 999999998643211 11 11232 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|-.....+ -.| +.....++++.++|+.|=.+.=..+.|.+.|++.
T Consensus 198 vslh~Plt~~T~~-----li~--------~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g 247 (334)
T 3kb6_A 198 ISLHVPYTKETHH-----MIN--------EERISLMKDGVYLINTARGKVVDTDALYRAYQRG 247 (334)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCCCChhhcc-----CcC--------HHHHhhcCCCeEEEecCccccccHHHHHHHHHhC
Confidence 9999884322211 223 2334568899999986644333345677777653
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.3e-05 Score=75.90 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=51.3
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc-
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||.. .+..+.+. ++++|+ ++|+++++.+ +. . +..++.+|+++.+.+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-~~~~l~av~d~~~~~~~---~~-~----------------~~~~~~~~~~~ll~~~ 66 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-PGLELAGVSSSDASKVH---AD-W----------------PAIPVVSDPQMLFNDP 66 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHH---TT-C----------------SSCCEESCHHHHHHCS
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCcEEEEEECCCHHHHH---hh-C----------------CCCceECCHHHHhcCC
Confidence 58999999999997 67777664 577875 7899998775 11 0 134567889887764
Q ss_pred -CcEEEEeccCCC
Q 011641 79 -ADIVFVSVNTPT 90 (480)
Q Consensus 79 -aDvVii~Vptp~ 90 (480)
.|+|++|+|+..
T Consensus 67 ~vD~V~i~tp~~~ 79 (352)
T 3kux_A 67 SIDLIVIPTPNDT 79 (352)
T ss_dssp SCCEEEECSCTTT
T ss_pred CCCEEEEeCChHH
Confidence 899999988653
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.91 E-value=4.3e-05 Score=76.78 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=50.5
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.||.. .+..+.+. ++++|+ ++|++++++.+-- +..++.+|+++.++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~ 64 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-DEYQISKIMTSRTEEVKRDF--------------------PDAEVVHELEEITNDP 64 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESSTHHHHTCT
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCceECCHHHHhcCC
Confidence 58999999999997 66666654 578875 6799987643211 13467788888876
Q ss_pred cCcEEEEeccCCC
Q 011641 78 EADIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|++|+|+..
T Consensus 65 ~vD~V~i~tp~~~ 77 (358)
T 3gdo_A 65 AIELVIVTTPSGL 77 (358)
T ss_dssp TCCEEEECSCTTT
T ss_pred CCCEEEEcCCcHH
Confidence 7899999988653
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=76.65 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=72.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||+|.+|.+++..|++. |. +|++++|++++.+.+.+...... +......++.+.+.++|
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~--G~~~V~v~nR~~~ka~~la~~~~~~~-------------~~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLST--AAERIDMANRTVEKAERLVREGDERR-------------SAYFSLAEAETRLAEYD 206 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECSSHHHHHHHHHHSCSSS-------------CCEECHHHHHHTGGGCS
T ss_pred CEEEEECcHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHhhhcc-------------CceeeHHHHHhhhccCC
Confidence 5799999999999999999998 87 99999999999888764210000 01111124455678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
+||.|+|.+...+. ..+- +. ...++++.+|++.++.|..| + +.+..++
T Consensus 207 ivIn~t~~~~~~~~----~~~~---i~------~~~l~~~~~v~D~~y~P~~T-~-ll~~A~~ 254 (297)
T 2egg_A 207 IIINTTSVGMHPRV----EVQP---LS------LERLRPGVIVSDIIYNPLET-K-WLKEAKA 254 (297)
T ss_dssp EEEECSCTTCSSCC----SCCS---SC------CTTCCTTCEEEECCCSSSSC-H-HHHHHHH
T ss_pred EEEECCCCCCCCCC----CCCC---CC------HHHcCCCCEEEEcCCCCCCC-H-HHHHHHH
Confidence 99999886543200 0000 00 13467789999998865444 4 4333443
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.5e-05 Score=78.72 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=66.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..|... |.+|+++|+++.+....... +... .+++++++.||+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~~-------------------G~~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAME-------------------GYQV-LLVEDVVEEAHI 269 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHHh-------------------CCee-cCHHHHHhhCCE
Confidence 5799999999999999999987 99999999998765433221 1232 478889999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
|+++.++..- .+ ......++++.+|++.+-.+
T Consensus 270 Vilt~gt~~i---------I~--------~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 270 FVTTTGNDDI---------IT--------SEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp EEECSSCSCS---------BC--------TTTGGGCCTTEEEEECSSSG
T ss_pred EEECCCCcCc---------cC--------HHHHhhcCCCcEEEEeCCCC
Confidence 9987655321 11 12345678999999876443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=79.59 Aligned_cols=70 Identities=9% Similarity=0.158 Sum_probs=54.5
Q ss_pred CcEEEEECCC-hhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAG-YVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG-~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
++||+|||+| .||..++..|.+. ++.+++ ++|+++++.+.+.+. -++...+|+++.++
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~ell~~ 62 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH-PDAQIVAACDPNEDVRERFGKE------------------YGIPVFATLAEMMQH 62 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC-TTEEEEEEECSCHHHHHHHHHH------------------HTCCEESSHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEEEeCCHHHHHHHHHH------------------cCCCeECCHHHHHcC
Confidence 3799999999 9999999999875 467765 789999988776542 02345688888776
Q ss_pred -cCcEEEEeccCC
Q 011641 78 -EADIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 63 ~~vD~V~i~tp~~ 75 (387)
T 3moi_A 63 VQMDAVYIASPHQ 75 (387)
T ss_dssp SCCSEEEECSCGG
T ss_pred CCCCEEEEcCCcH
Confidence 599999998854
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.3e-05 Score=77.42 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=53.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec----CHHHhh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST----DVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~----d~~~a~ 76 (480)
+||+|||+|.||...+..|.+. ++++| .++|+++++.+.+.+. +.+..-...+..+ |+++.+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~------------~~~~g~~~~~~~~~~~~~~~~ll 87 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEI------------LKKNGKKPAKVFGNGNDDYKNML 87 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHH------------HHHTTCCCCEEECSSTTTHHHHT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHH------------HHhcCCCCCceeccCCCCHHHHh
Confidence 6899999999999999988874 57776 4789999988876531 0000000134556 888877
Q ss_pred c--cCcEEEEeccCC
Q 011641 77 S--EADIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
+ +.|+|++|+|+.
T Consensus 88 ~~~~vD~V~i~tp~~ 102 (444)
T 2ixa_A 88 KDKNIDAVFVSSPWE 102 (444)
T ss_dssp TCTTCCEEEECCCGG
T ss_pred cCCCCCEEEEcCCcH
Confidence 6 589999998754
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=78.27 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=72.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-cCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
++|+|+|+|.||..+|..|.+. |.+|+++|+++++++.+.+.. + .+.. +.++.+. +||
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~--GakVvv~D~~~~~l~~~a~~~-----------------g-a~~v-~~~~ll~~~~D 232 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD 232 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHc-----------------C-CEEE-ChHHHhccCCc
Confidence 5799999999999999999998 999999999999887765420 1 1222 2233333 899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+++.|.... ..+.. .++ .++ .. +|.+++..|-+.++..++|++.+ +.+.|..+
T Consensus 233 Ivip~a~~~----------~I~~~----~~~----~lg-~~-iV~e~An~p~t~~ea~~~L~~~G------i~~~Pd~~ 285 (364)
T 1leh_A 233 IFAPCALGA----------VLNDF----TIP----QLK-AK-VIAGSADNQLKDPRHGKYLHELG------IVYAPDYV 285 (364)
T ss_dssp EEEECSCSC----------CBSTT----HHH----HCC-CS-EECCSCSCCBSSHHHHHHHHHHT------CEECCHHH
T ss_pred EeeccchHH----------HhCHH----HHH----hCC-Cc-EEEeCCCCCcccHHHHHHHHhCC------CEEeccee
Confidence 999885321 11211 122 232 33 45567777776656667777754 35677764
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.8e-05 Score=80.35 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=53.2
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEV-AVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
+||+|||+|.||. .++..|.+. +++++ .++|+++++.+.+.+.. .+. ..+...+|+++.++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~g~~~--------------~~~~~~~~~~~ll~~ 148 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYGVDP--------------RKIYDYSNFDKIAKD 148 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTTCCG--------------GGEECSSSGGGGGGC
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhCCCc--------------ccccccCCHHHHhcC
Confidence 6899999999997 888888764 36775 58999999887765421 000 01345677888776
Q ss_pred -cCcEEEEeccCC
Q 011641 78 -EADIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 149 ~~vD~V~iatp~~ 161 (433)
T 1h6d_A 149 PKIDAVYIILPNS 161 (433)
T ss_dssp TTCCEEEECSCGG
T ss_pred CCCCEEEEcCCch
Confidence 789999998753
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.7e-05 Score=78.53 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=52.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||.|+|+|+||..+|..|++ .++|+++|++.++++++++....+. + .+.-..++.+.++++|+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~---~~~v~~~~~~~~~~~~~~~~~~~~~---~----------d~~d~~~l~~~~~~~Dv 80 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD---EFDVYIGDVNNENLEKVKEFATPLK---V----------DASNFDKLVEVMKEFEL 80 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEEESCHHHHHHHTTTSEEEE---C----------CTTCHHHHHHHHTTCSE
T ss_pred cEEEEECCCHHHHHHHHHHhc---CCCeEEEEcCHHHHHHHhccCCcEE---E----------ecCCHHHHHHHHhCCCE
Confidence 899999999999999999986 4899999999999998875321110 0 00001124456789999
Q ss_pred EEEeccC
Q 011641 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
||.|+|.
T Consensus 81 Vi~~~p~ 87 (365)
T 3abi_A 81 VIGALPG 87 (365)
T ss_dssp EEECCCG
T ss_pred EEEecCC
Confidence 9999884
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.78 E-value=8e-05 Score=74.24 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=54.5
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+| .+|...+..|.+..++.++ .++|+++++.+.+.+.. +...+.+|+++.++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 81 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG 81 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCC
Confidence 689999999 8999999988864246776 57899999988766420 11356788998775
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 82 ~vD~V~i~tp~~ 93 (340)
T 1zh8_A 82 LVDAVDLTLPVE 93 (340)
T ss_dssp CCSEEEECCCGG
T ss_pred CCCEEEEeCCch
Confidence 589999998754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.9e-05 Score=77.74 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=67.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEE--ecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~~ 78 (480)
++|+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+ ....+. ... ..++++.+++
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g~~~~---------------~~~~~~~~l~~~l~~ 231 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFCGRIH---------------TRYSSAYELEGAVKR 231 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSSE---------------EEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcCCeeE---------------eccCCHHHHHHHHcC
Confidence 4799999999999999999887 8999999999998877764 211100 000 1234566789
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+|+||.|++.|... .+.+ +.+...+.++++.+|++.|
T Consensus 232 aDvVi~~~~~p~~~-------t~~l-----i~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 232 ADLVIGAVLVPGAK-------APKL-----VSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CSEEEECCCCTTSC-------CCCC-----BCHHHHTTSCTTCEEEEGG
T ss_pred CCEEEECCCcCCCC-------Ccce-----ecHHHHhcCCCCcEEEEEe
Confidence 99999999766421 1111 1234456678888888765
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.2e-05 Score=74.63 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=50.5
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|+| +|.||..++..+.+. +++++.+ +|++..... |. .. .++.. . ..++.+++|+++.+.+
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~~~~~----G~-d~-----gel~g-~-~~gv~v~~dl~~ll~~ 73 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTGSPQL----GQ-DA-----GAFLG-K-QTGVALTDDIERVCAE 73 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTTCTTT----TS-BT-----TTTTT-C-CCSCBCBCCHHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecCcccc----cc-cH-----HHHhC-C-CCCceecCCHHHHhcC
Confidence 58999999 899999999998875 5888776 688643210 10 00 01100 0 0145667899988889
Q ss_pred CcEEEEecc
Q 011641 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+||.+++
T Consensus 74 ~DVVIDfT~ 82 (272)
T 4f3y_A 74 ADYLIDFTL 82 (272)
T ss_dssp CSEEEECSC
T ss_pred CCEEEEcCC
Confidence 999999853
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00024 Score=74.03 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=52.5
Q ss_pred cEEEEECCChhHHHHH--HHHHHc--C--CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHH
Q 011641 2 VKICCIGAGYVGGPTM--AVIALK--C--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA--~~La~~--~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~ 74 (480)
|||+|||.|.+|.+.. ..++.. . .+.++.++|+++++++....- +....... ..-+++.|+|.++
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~--------~~~~~~~~~~~~~i~~t~d~~e 72 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYIL--------ARKYVEELNSPVKVVKTESLDE 72 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHH--------HHHHHHHHTCCCEEEEESCHHH
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHH--------HHHHHHHcCCCeEEEEeCCHHH
Confidence 8999999999986632 223321 1 135799999999987653320 11112111 1235788999999
Q ss_pred hhccCcEEEEecc
Q 011641 75 HVSEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
|+++||+||+++.
T Consensus 73 Al~gAD~Vi~~~g 85 (477)
T 3u95_A 73 AIEGADFIINTAY 85 (477)
T ss_dssp HHTTCSEEEECCC
T ss_pred HhCCCCEEEECcc
Confidence 9999999999974
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=74.14 Aligned_cols=90 Identities=18% Similarity=0.083 Sum_probs=65.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||.|.+|..+|..+... |.+|+++|+++.+....... ++++ .+++++++.+|+
T Consensus 248 KTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~~~-------------------G~~v-v~LeElL~~ADI 305 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAAMD-------------------GFEV-VTLDDAASTADI 305 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEE-CCHHHHGGGCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHHhc-------------------Ccee-ccHHHHHhhCCE
Confidence 4799999999999999999887 89999999998764332211 1233 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
|+.|.+++. ..+ +.....++++.++++.+-.+
T Consensus 306 Vv~atgt~~---------lI~--------~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 306 VVTTTGNKD---------VIT--------IDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp EEECCSSSS---------SBC--------HHHHHHSCTTEEEEECSSST
T ss_pred EEECCCCcc---------ccC--------HHHHhcCCCCeEEEEcCCCC
Confidence 999866531 111 23345678999999866443
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.3e-05 Score=76.01 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=53.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|||+| +|...+..+++...++++. ++|+++++.+++.+. -++...+|+++.+++.|
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~------------------~gv~~~~~~~~l~~~~D 68 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA------------------FGIPLYTSPEQITGMPD 68 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH------------------TTCCEESSGGGCCSCCS
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH------------------hCCCEECCHHHHhcCCC
Confidence 479999999 6988887777642357766 579999998887652 12455688888888999
Q ss_pred EEEEeccCCCC
Q 011641 81 IVFVSVNTPTK 91 (480)
Q Consensus 81 vVii~Vptp~~ 91 (480)
+++||+|++.+
T Consensus 69 ~v~i~~p~~~h 79 (372)
T 4gmf_A 69 IACIVVRSTVA 79 (372)
T ss_dssp EEEECCC--CT
T ss_pred EEEEECCCccc
Confidence 99999998754
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.70 E-value=9.9e-05 Score=75.76 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=51.7
Q ss_pred cEEEEECCCh---hHHHHHHHHHHcCCCCeEE--EEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGY---VGGPTMAVIALKCPSIEVA--VVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~---~G~~lA~~La~~~~G~~V~--~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||+|||+|. ||...+..+... ++++++ ++|+++++.+.+.+.. .+ ..++.+|+++.
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~g~~----------------~~~~~~~~~~l 100 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD-DHYELVAGALSSTPEKAEASGRELGLD----------------PSRVYSDFKEM 100 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT-SCEEEEEEECCSSHHHHHHHHHHHTCC----------------GGGBCSCHHHH
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHcCCC----------------cccccCCHHHH
Confidence 4899999998 999988888765 357765 5799999988776420 00 01345777777
Q ss_pred hcc-------CcEEEEeccCCC
Q 011641 76 VSE-------ADIVFVSVNTPT 90 (480)
Q Consensus 76 ~~~-------aDvVii~Vptp~ 90 (480)
+++ .|+|+||+|+..
T Consensus 101 l~~~~~~~~~vD~V~I~tp~~~ 122 (417)
T 3v5n_A 101 AIREAKLKNGIEAVAIVTPNHV 122 (417)
T ss_dssp HHHHHHCTTCCSEEEECSCTTS
T ss_pred HhcccccCCCCcEEEECCCcHH
Confidence 654 899999988653
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=71.75 Aligned_cols=69 Identities=4% Similarity=0.044 Sum_probs=51.7
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc-
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||||||+|.+|. .++..+... +.+|+ ++|+++++.+.+.+.. +..++.+|+++.+++
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~--~~~lvav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~~~ 87 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA--GARLAGFHEKDDALAAEFSAVY-----------------ADARRIATAEEILEDE 87 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT--TCEEEEEECSCHHHHHHHHHHS-----------------SSCCEESCHHHHHTCT
T ss_pred cEEEEECcCHHHHHHHHHHhhcC--CcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 5899999999995 466666654 88855 7899999988776521 123567888887764
Q ss_pred -CcEEEEeccCC
Q 011641 79 -ADIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
.|+|+||+|+.
T Consensus 88 ~vD~V~I~tp~~ 99 (361)
T 3u3x_A 88 NIGLIVSAAVSS 99 (361)
T ss_dssp TCCEEEECCCHH
T ss_pred CCCEEEEeCChH
Confidence 89999998753
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.3e-05 Score=73.36 Aligned_cols=98 Identities=22% Similarity=0.255 Sum_probs=66.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.... ......++.+++.++|
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------------~~~~~~~~~~~~~~aD 177 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKI--VRPTLTVANRTMSRFNNWSLNI------------------NKINLSHAESHLDEFD 177 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--CCSCCEEECSCGGGGTTCCSCC------------------EEECHHHHHHTGGGCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHhc------------------ccccHhhHHHHhcCCC
Confidence 4799999999999999999998 87 8999999998876655320 1111234555678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||-|+|.....+ .+ ..+ -...++++.+|++.++.|..|
T Consensus 178 iVInaTp~Gm~~~-------~~-----~~l--~~~~l~~~~~V~D~vY~P~~T 216 (277)
T 3don_A 178 IIINTTPAGMNGN-------TD-----SVI--SLNRLASHTLVSDIVYNPYKT 216 (277)
T ss_dssp EEEECCC--------------C-----CSS--CCTTCCSSCEEEESCCSSSSC
T ss_pred EEEECccCCCCCC-------Cc-----CCC--CHHHcCCCCEEEEecCCCCCC
Confidence 9999977532110 00 000 024567889999998886655
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.8e-05 Score=76.99 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=52.6
Q ss_pred cEEEEECCCh---hHHHHHHHHHHcCCCCeEE--EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGY---VGGPTMAVIALKCPSIEVA--VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~---~G~~lA~~La~~~~G~~V~--~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||||||+|. ||...+..+... ++++++ ++|+++++.+.+.+.. ++ ...++.+|+++.+
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~------g~---------~~~~~~~~~~~ll 76 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD-NTFVLVAGAFDIDPIRGSAFGEQL------GV---------DSERCYADYLSMF 76 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG-GSEEEEEEECCSSHHHHHHHHHHT------TC---------CGGGBCSSHHHHH
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC-CCeEEEEEEeCCCHHHHHHHHHHh------CC---------CcceeeCCHHHHH
Confidence 4899999999 999999888765 357876 4799999988876421 00 0013457777766
Q ss_pred cc-------CcEEEEeccCC
Q 011641 77 SE-------ADIVFVSVNTP 89 (480)
Q Consensus 77 ~~-------aDvVii~Vptp 89 (480)
++ .|+|+||+|+.
T Consensus 77 ~~~~~~~~~vD~V~i~tp~~ 96 (398)
T 3dty_A 77 EQEARRADGIQAVSIATPNG 96 (398)
T ss_dssp HHHTTCTTCCSEEEEESCGG
T ss_pred hcccccCCCCCEEEECCCcH
Confidence 54 89999998864
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=5.2e-05 Score=75.07 Aligned_cols=65 Identities=20% Similarity=0.493 Sum_probs=48.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..++..+.+. ++.++ .++|+++++ .+. -++..++|+++.+.++|
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-~~~elvav~d~~~~~--~~~--------------------~gv~~~~d~~~ll~~~D 60 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATL--DTK--------------------TPVFDVADVDKHADDVD 60 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCC--SSS--------------------SCEEEGGGGGGTTTTCS
T ss_pred CEEEEEeecHHHHHHHHHHhcC-CCCEEEEEEcCCHHH--hhc--------------------CCCceeCCHHHHhcCCC
Confidence 6899999999999999998875 46675 578987543 111 02456677777667899
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|++|+|+.
T Consensus 61 vViiatp~~ 69 (320)
T 1f06_A 61 VLFLCMGSA 69 (320)
T ss_dssp EEEECSCTT
T ss_pred EEEEcCCcH
Confidence 999998753
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.4e-05 Score=74.74 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=49.4
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc-
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++ .+. -+..+..+|+++.+++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~---~~~-----------------~~~~~~~~~~~~ll~~~ 64 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-PHFELYKIVERSKELS---KER-----------------YPQASIVRSFKELTEDP 64 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-TTEEEEEEECSSCCGG---GTT-----------------CTTSEEESCSHHHHTCT
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHH---HHh-----------------CCCCceECCHHHHhcCC
Confidence 58999999999997 67777664 578875 679987652 211 0235677888888765
Q ss_pred -CcEEEEeccCC
Q 011641 79 -ADIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 65 ~vD~V~i~tp~~ 76 (362)
T 3fhl_A 65 EIDLIVVNTPDN 76 (362)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 89999998854
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.4e-05 Score=71.85 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=53.7
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|+|||+|.||.+++..|++. |. +|++++|++++.+.+.+.. ......++.++++++|+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~--G~~~I~v~nR~~~ka~~la~~~------------------~~~~~~~~~~~~~~aDi 169 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM--GVKDIWVVNRTIERAKALDFPV------------------KIFSLDQLDEVVKKAKS 169 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCCEEEEESCHHHHHTCCSSC------------------EEEEGGGHHHHHHTCSE
T ss_pred eEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHc------------------ccCCHHHHHhhhcCCCE
Confidence 689999999999999999998 87 8999999999988776421 11223456667889999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|..
T Consensus 170 VInatp~g 177 (253)
T 3u62_A 170 LFNTTSVG 177 (253)
T ss_dssp EEECSSTT
T ss_pred EEECCCCC
Confidence 99998753
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00029 Score=71.78 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=64.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|+|+|.+|..+|..+... |.+|+++|+++.+....... +... .+++++++.+|+
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~~-------------------G~~v-~~Leeal~~ADI 278 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACMD-------------------GFRL-VKLNEVIRQVDI 278 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHHc-------------------CCEe-ccHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765432221 1222 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
|++|..++. ..+ ......++++.+|++.+-.+
T Consensus 279 Vi~atgt~~---------lI~--------~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 279 VITCTGNKN---------VVT--------REHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp EEECSSCSC---------SBC--------HHHHHHSCTTEEEEECSSTT
T ss_pred EEECCCCcc---------cCC--------HHHHHhcCCCcEEEEecCCC
Confidence 999844331 111 23345678899998865443
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00027 Score=72.62 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=58.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHc---CC-CCCcC-CChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNS---DQ-LPIYE-PGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~---~~-~~~~e-~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||||||+|.||..++..+.+. ++.+| .++|+++++.+...+ |. ..+.. ....++-.....+...+++|+++.
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhC-CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 5899999999999999888764 57765 468999998877643 20 11100 011111111123457889999998
Q ss_pred hc--cCcEEEEeccCC
Q 011641 76 VS--EADIVFVSVNTP 89 (480)
Q Consensus 76 ~~--~aDvVii~Vptp 89 (480)
++ +.|+|++|+|+|
T Consensus 103 L~d~dIDaVviaTp~p 118 (446)
T 3upl_A 103 LSNPLIDVIIDATGIP 118 (446)
T ss_dssp HTCTTCCEEEECSCCH
T ss_pred hcCCCCCEEEEcCCCh
Confidence 76 589999998754
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00036 Score=69.37 Aligned_cols=115 Identities=16% Similarity=0.280 Sum_probs=73.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCC--e-----EEEEECCH--HHHH----HHHcCCCCCcCCChHHHHhhhcCCCEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSI--E-----VAVVDISV--SRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~-----V~~~D~~~--~~v~----~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|||+|+| +|.+|.++|..|+.. |. + +.++|+++ ++++ .|+....++. ..+.
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~--~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~-------------~~~~ 68 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG--SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL-------------KDVI 68 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE-------------EEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc-------------CCEE
Confidence 6999999 899999999999976 44 5 99999974 2333 2332211210 2356
Q ss_pred EecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+++..+++++||+||++-..|.... ..+.| .+.+++..+.+.++.+++..+++ -|.|..+.-.
T Consensus 69 ~~~~~~~~~~daDvVvitAg~prkpG----~tR~dll~~N~~i~~~i~~~i~~~~~~~~~viv-vsNPvd~~t~ 137 (333)
T 5mdh_A 69 ATDKEEIAFKDLDVAILVGSMPRRDG----MERKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTNCL 137 (333)
T ss_dssp EESCHHHHTTTCSEEEECCSCCCCTT----CCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHHH
T ss_pred EcCCcHHHhCCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-cCCchHHHHH
Confidence 67777777999999999976654321 11333 34456666677777665543433 3567665433
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00066 Score=67.62 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=73.5
Q ss_pred EEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEECCHHH--HH----HHHcCCCCCcCCChHHHHhhhcCCCEEEec
Q 011641 3 KICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVDISVSR--IN----AWNSDQLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~~--v~----~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|+|+ |.+|.+++..|+... -| .++.++|+++.. ++ .|.....+. ......++
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~-------------~~~~~~~~ 92 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL-------------LDKVVVTA 92 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTT-------------EEEEEEES
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccC-------------CCcEEEcC
Confidence 8999996 999999999999751 01 279999998642 22 222221111 12356778
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+..+++++||+||++-..|..+.. .+.| .+-+++..+.|.++..++.+|+. -|.|..+.-
T Consensus 93 ~~~~a~~~advVvi~aG~prkpGm----tR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlv-vsNPvd~~~ 157 (345)
T 4h7p_A 93 DPRVAFDGVAIAIMCGAFPRKAGM----ERKDLLEMNARIFKEQGEAIAAVAASDCRVVV-VGNPANTNA 157 (345)
T ss_dssp CHHHHTTTCSEEEECCCCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHH
T ss_pred ChHHHhCCCCEEEECCCCCCCCCC----CHHHHHHHhHHHHHHHHHHHHhhccCceEEEE-eCCCcchHH
Confidence 888889999999999776654311 1222 33445556667777667776544 356765543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=73.53 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=64.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEE--ecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~~ 78 (480)
++|+|+|+|.+|..+|..+... |++|+++|+++++.+.+.+ ....+. ... ..+.++.+++
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g~~~~---------------~~~~~~~~l~~~~~~ 229 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFGGRVI---------------TLTATEANIKKSVQH 229 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSEE---------------EEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcCceEE---------------EecCCHHHHHHHHhC
Confidence 5899999999999999999988 8999999999998877654 211100 001 1234556788
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+|+||.|++.+... .+. -+.+...+.++++.+|++.|..
T Consensus 230 ~DvVi~~~g~~~~~-------~~~-----li~~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 230 ADLLIGAVLVPGAK-------APK-----LVTRDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp CSEEEECCC--------------C-----CSCHHHHTTSCTTCEEEECC--
T ss_pred CCEEEECCCCCccc-------cch-----hHHHHHHHhhcCCCEEEEEecC
Confidence 99999998865210 000 0123445667788888876643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=74.61 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=52.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-------CCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-------PSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-------~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+||||||+|.||...+..|.+.. .+.+|+ ++|+++++.+++.+.. +..++.+|++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~-----------------~~~~~y~d~~ 89 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL-----------------GAEKAYGDWR 89 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCeEECCHH
Confidence 48999999999999888887630 123544 6899999988876520 1235678899
Q ss_pred Hhhc--cCcEEEEeccCC
Q 011641 74 KHVS--EADIVFVSVNTP 89 (480)
Q Consensus 74 ~a~~--~aDvVii~Vptp 89 (480)
+.++ +.|+|+||+|+.
T Consensus 90 ~ll~~~~vD~V~I~tp~~ 107 (412)
T 4gqa_A 90 ELVNDPQVDVVDITSPNH 107 (412)
T ss_dssp HHHHCTTCCEEEECSCGG
T ss_pred HHhcCCCCCEEEECCCcH
Confidence 8775 689999998754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=7.5e-05 Score=76.55 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=54.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHh-hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+++...++. +..-.+. ++++ +.+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~--------------L~~agi~~ 68 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDL--------------LESAGAAK 68 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHH--------------HHHTTTTT
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHH--------------HHhcCCCc
Confidence 6799999999999999999998 9999999999999999886433332 2111111 1222 578
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
||+||+|++.
T Consensus 69 A~~viv~~~~ 78 (413)
T 3l9w_A 69 AEVLINAIDD 78 (413)
T ss_dssp CSEEEECCSS
T ss_pred cCEEEECCCC
Confidence 9999999764
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=71.01 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=77.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+++||.. ....+++.|.++|++|.+||......+ .+ ...+...++
T Consensus 6 ~kIgfIGLG~----------MG~~mA~~L~~~G~~V~v~dr~~~~~~---~l-------------------~~~G~~~~~ 53 (297)
T 4gbj_A 6 EKIAFLGLGN----------LGTPIAEILLEAGYELVVWNRTASKAE---PL-------------------TKLGATVVE 53 (297)
T ss_dssp CEEEEECCST----------THHHHHHHHHHTTCEEEEC-------C---TT-------------------TTTTCEECS
T ss_pred CcEEEEecHH----------HHHHHHHHHHHCCCeEEEEeCCHHHHH---HH-------------------HHcCCeEeC
Confidence 4899999965 889999999999999999997544321 11 113567789
Q ss_pred CHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEec
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG 466 (480)
++.|+++++|+|+++..-+. ..+.-...+...+++..+|||+..+... +.+.+.|+.|..-+
T Consensus 54 s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldap 122 (297)
T 4gbj_A 54 NAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAP 122 (297)
T ss_dssp SGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred CHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCC
Confidence 99999999999999988754 2222223466677777799999998753 34456788887654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00019 Score=62.64 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=34.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC-HHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~ 43 (480)
++|.|+|+|.+|..++..|.+. |++|+++|++ +++++.+.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~ 44 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLE 44 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHH
Confidence 4699999999999999999998 9999999998 56655554
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00028 Score=73.69 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=55.0
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||+|||+ |.||..++..|.+..++++|+ ++|+++++.+.+.+.. +. ...++.+|+++.+
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~------g~---------~~~~~~~d~~ell 104 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL------QL---------KHATGFDSLESFA 104 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT------TC---------TTCEEESCHHHHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------CC---------CcceeeCCHHHHh
Confidence 68999999 999999999998742477764 7899999888776421 00 1135678888877
Q ss_pred c--cCcEEEEeccCC
Q 011641 77 S--EADIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
+ +.|+|+||+|+.
T Consensus 105 ~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 105 QYKDIDMIVVSVKVP 119 (479)
T ss_dssp HCTTCSEEEECSCHH
T ss_pred cCCCCCEEEEcCCcH
Confidence 5 689999998753
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00018 Score=70.86 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=50.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh--
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-- 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (480)
|+||+|||+ |++|...+..+... +.+ |.++|+++++. ...+. -+..++.+|+++.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~ 62 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV--GGVLVASLDPATNVG-LVDSF-----------------FPEAEFFTEPEAFEAY 62 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESCHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCceeCCHHHHHHH
Confidence 789999999 79999999999986 666 45789987752 12111 02356677877765
Q ss_pred --------ccCcEEEEeccCC
Q 011641 77 --------SEADIVFVSVNTP 89 (480)
Q Consensus 77 --------~~aDvVii~Vptp 89 (480)
.+.|+|+||+|+.
T Consensus 63 ~~~l~~~~~~vD~V~I~tP~~ 83 (312)
T 3o9z_A 63 LEDLRDRGEGVDYLSIASPNH 83 (312)
T ss_dssp HHHHHHTTCCCSEEEECSCGG
T ss_pred hhhhcccCCCCcEEEECCCch
Confidence 5789999998754
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=70.92 Aligned_cols=69 Identities=26% Similarity=0.210 Sum_probs=50.2
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCe-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh--
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-- 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (480)
|+||||||+ |++|...+..|... +.+ |.++|+++++. .+.+. -...++.+|+++.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~ 62 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT--GNCLVSAYDINDSVG-IIDSI-----------------SPQSEFFTEFEFFLDH 62 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESSHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCcEECCHHHHHHh
Confidence 789999999 79999999999886 666 45689887652 22211 02346677877755
Q ss_pred ---------ccCcEEEEeccCC
Q 011641 77 ---------SEADIVFVSVNTP 89 (480)
Q Consensus 77 ---------~~aDvVii~Vptp 89 (480)
.+.|+|+||+|+.
T Consensus 63 ~~~l~~~~~~~vD~V~I~tP~~ 84 (318)
T 3oa2_A 63 ASNLKRDSATALDYVSICSPNY 84 (318)
T ss_dssp HHHHTTSTTTSCCEEEECSCGG
T ss_pred hhhhhhccCCCCcEEEECCCcH
Confidence 4689999998754
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0013 Score=64.83 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=70.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEEC--CHHHHHH----HHcCCCCCcCCChHHHHhhhcCCCEEEecC-HH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI--SVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTD-VE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d-~~ 73 (480)
|||+|+|+ |.+|.+++..|+.++...++.++|+ ++++.+. +.... ++.. ....++.++| ..
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~~~----------~~~~i~~~~d~l~ 69 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AGTR----------SDANIYVESDENL 69 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TTSC----------CCCEEEEEETTCG
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-HhcC----------CCeEEEeCCcchH
Confidence 79999999 9999999999988621247999999 8765543 22110 1100 0113444343 46
Q ss_pred HhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 74 KHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+++++||+||++...|... + ....| ...+++.++.+.++. +.+|++ +|.|..+.-.
T Consensus 70 ~al~gaD~Vi~~Ag~~~~~-g---~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv-~SNPv~~~t~ 130 (313)
T 1hye_A 70 RIIDESDVVIITSGVPRKE-G---MSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV-ITNPVDVMTY 130 (313)
T ss_dssp GGGTTCSEEEECCSCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE-CSSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCC-C---CcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE-ecCcHHHHHH
Confidence 6799999999998765432 1 01112 233345555555555 445544 5688776543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00023 Score=72.62 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=36.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|||+|.+|...+..+... |.+|+++|+++++.+.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 4799999999999999998887 8999999999988777654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0013 Score=64.08 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=81.8
Q ss_pred HHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCC
Q 011641 311 VNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQ 390 (480)
Q Consensus 311 ~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
+..++..++..+.+++|+|+|+. .-+..+++.|...|++|.+|||.....+....++
T Consensus 142 ~~~~l~~~~~~l~g~~v~IiG~G----------~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g------------- 198 (293)
T 3d4o_A 142 IMMAIQHTDFTIHGANVAVLGLG----------RVGMSVARKFAALGAKVKVGARESDLLARIAEMG------------- 198 (293)
T ss_dssp HHHHHHHCSSCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-------------
T ss_pred HHHHHHhcCCCCCCCEEEEEeeC----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------------
Confidence 33333334457889999999974 4789999999999999999999765432222221
Q ss_pred CCCcccccceEE--ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC---CCChhhhhhcCcEEEEe
Q 011641 391 PMSPTMVKQVSV--VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN---VVDANKLREIGFIVYSI 465 (480)
Q Consensus 391 ~~~~~~~~~~~~--~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~---~~~~~~~~~~g~~y~~i 465 (480)
..+ ..++++.++++|+|+++++...+ +. ...+.|++..++||.-+ -.+.+..+..|..++.+
T Consensus 199 ---------~~~~~~~~l~~~l~~aDvVi~~~p~~~i---~~-~~l~~mk~~~~lin~ar~~~~~~~~~a~~~Gv~~~~~ 265 (293)
T 3d4o_A 199 ---------MEPFHISKAAQELRDVDVCINTIPALVV---TA-NVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLV 265 (293)
T ss_dssp ---------SEEEEGGGHHHHTTTCSEEEECCSSCCB---CH-HHHHHSCTTCEEEECSSTTCSBCHHHHHHHTCEEEEC
T ss_pred ---------CeecChhhHHHHhcCCCEEEECCChHHh---CH-HHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCEEEEC
Confidence 122 24678889999999999987443 33 34567887789999875 23334555678877644
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00085 Score=68.67 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=51.6
Q ss_pred CcEEEEECCChhHHHH--HHHHHH--cC-CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPT--MAVIAL--KC-PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~l--A~~La~--~~-~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+|||+|||+|.+ .+. +..|+. .. ++.+|.++|+++++++.... +...+... .-+++.++|+.++
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~---------~~~~~~~~-~~~v~~t~d~~~a 70 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD---------FVKRLVKD-RFKVLISDTFEGA 70 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH---------HHHHHHTT-SSEEEECSSHHHH
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH---------HHHHHhhC-CeEEEEeCCHHHH
Confidence 589999999996 332 223454 31 26789999999998775321 10101000 1246777898788
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||++...+
T Consensus 71 l~~AD~Viitagvg 84 (417)
T 1up7_A 71 VVDAKYVIFQFRPG 84 (417)
T ss_dssp HTTCSEEEECCCTT
T ss_pred hCCCCEEEEcCCCC
Confidence 99999999998654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00041 Score=69.30 Aligned_cols=71 Identities=15% Similarity=0.333 Sum_probs=47.8
Q ss_pred CcEEEEECCChhHH-HHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|||+|.||. ..+..+... ++++|+ ++|++ +.+.+.+. ....+.+..+|+++.+.+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~--~~~~~a~~---------------~~~~~~~~~~~~~~ll~~ 63 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIR-ETLEVKTIFDLH--VNEKAAAP---------------FKEKGVNFTADLNELLTD 63 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECTT--CCHHHHHH---------------HHTTTCEEESCTHHHHSC
T ss_pred eeEEEEEccCHHHHHHHHHHHhhC-CCeEEEEEECCC--HHHHHHHh---------------hCCCCCeEECCHHHHhcC
Confidence 36999999999998 456656553 578875 67877 22222210 000235677889988765
Q ss_pred --CcEEEEeccCC
Q 011641 79 --ADIVFVSVNTP 89 (480)
Q Consensus 79 --aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 64 ~~~D~V~i~tp~~ 76 (349)
T 3i23_A 64 PEIELITICTPAH 76 (349)
T ss_dssp TTCCEEEECSCGG
T ss_pred CCCCEEEEeCCcH
Confidence 89999998754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00062 Score=62.48 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=51.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|.+|..++..|+++ |++|++++|++++.+.+..+ ..+..-++ ++...+++.++|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~-~~~~~~D~--------------~d~~~~~~~~~d 63 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR--GHEVTAIVRNAGKITQTHKD-INILQKDI--------------FDLTLSDLSDQN 63 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCSHHHHHHCSS-SEEEECCG--------------GGCCHHHHTTCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcCchhhhhccCC-CeEEeccc--------------cChhhhhhcCCC
Confidence 7999999 599999999999998 99999999999888776421 11111111 010014678999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|...+
T Consensus 64 ~vi~~ag~~ 72 (221)
T 3ew7_A 64 VVVDAYGIS 72 (221)
T ss_dssp EEEECCCSS
T ss_pred EEEECCcCC
Confidence 999998754
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00048 Score=68.89 Aligned_cols=104 Identities=11% Similarity=0.133 Sum_probs=78.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+||+.....+....+ ++
T Consensus 161 ~l~gktvGIIG~G----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g~ 208 (351)
T 3jtm_A 161 DLEGKTIGTVGAG----------RIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET----------------------GA 208 (351)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH----------------------CC
T ss_pred cccCCEEeEEEeC----------HHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC----------------------CC
Confidence 5789999999984 478899999999999999999876443333322 24
Q ss_pred EEecCHHhhcccccEEEEEecC-cccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.+.+++++.++.+|+|+++++. ++-+++=-.+..+.|++.+++||+-+ ++|.+.+.
T Consensus 209 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 267 (351)
T 3jtm_A 209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVV 267 (351)
T ss_dssp EECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred eEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHH
Confidence 5567899999999999999986 34444333456778998889999976 66655443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00025 Score=71.70 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=51.5
Q ss_pred cEEEEEC-CChhHHH-HH----HHHHHcCCCCeE----------EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCC
Q 011641 2 VKICCIG-AGYVGGP-TM----AVIALKCPSIEV----------AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN 65 (480)
Q Consensus 2 mkI~VIG-lG~~G~~-lA----~~La~~~~G~~V----------~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~ 65 (480)
+||+||| +|.||.. .+ ..+.+. ++..+ .++|+++++.+.+.+.. +.
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~-~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~-----------------~~ 68 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ-GGVRLKNGDRIMPDPILVGRSAEKVEALAKRF-----------------NI 68 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH-TSEECTTSCEEEEEEEEECSSSHHHHHHHHHT-----------------TC
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc-CceeecCCcccceeeEEEcCCHHHHHHHHHHh-----------------CC
Confidence 5899999 9999997 66 666665 23333 38999999988876421 11
Q ss_pred EEEecCHHHhhcc--CcEEEEeccCCC
Q 011641 66 LFFSTDVEKHVSE--ADIVFVSVNTPT 90 (480)
Q Consensus 66 l~~t~d~~~a~~~--aDvVii~Vptp~ 90 (480)
.++++|+++.+++ .|+|++|+|+..
T Consensus 69 ~~~~~~~~~ll~~~~iD~V~i~tp~~~ 95 (383)
T 3oqb_A 69 ARWTTDLDAALADKNDTMFFDAATTQA 95 (383)
T ss_dssp CCEESCHHHHHHCSSCCEEEECSCSSS
T ss_pred CcccCCHHHHhcCCCCCEEEECCCchH
Confidence 1356888887754 899999988643
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0003 Score=70.47 Aligned_cols=101 Identities=9% Similarity=0.126 Sum_probs=76.1
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||....+.. .. .+
T Consensus 156 ~~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~~----------------------~g 202 (352)
T 3gg9_A 156 RVLKGQTLGIFGYG----------KIGQLVAGYGRAFGMNVLVWGRENSKERA-RA----------------------DG 202 (352)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSHHHHHHH-HH----------------------TT
T ss_pred ccCCCCEEEEEeEC----------HHHHHHHHHHHhCCCEEEEECCCCCHHHH-Hh----------------------cC
Confidence 35689999999985 47789999999999999999997533221 11 23
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+++.+++++.++++|+|+++++-. +-+++--.+..+.|++.+++||+-+ +++.+
T Consensus 203 ~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~ 259 (352)
T 3gg9_A 203 FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEEN 259 (352)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTT
T ss_pred ceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHH
Confidence 566678999999999999998764 3444333456788998889999976 55544
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=73.42 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=54.7
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||+|||+ |.||..++..|.+..++++| .++|+++++.+.+.+.. +. ...+..+|+++.+
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~------g~---------~~~~~~~~~~~ll 85 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRL------KL---------SNATAFPTLESFA 85 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TC---------TTCEEESSHHHHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------CC---------CcceeeCCHHHHh
Confidence 58999999 99999999999874247776 57899999887766421 00 1235678888877
Q ss_pred c--cCcEEEEeccCC
Q 011641 77 S--EADIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
+ +.|+|++|+|+.
T Consensus 86 ~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 86 SSSTIDMIVIAIQVA 100 (438)
T ss_dssp HCSSCSEEEECSCHH
T ss_pred cCCCCCEEEEeCCcH
Confidence 5 689999998753
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=8.2e-05 Score=71.93 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=47.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+... ++++++ ++|+++++.. +..--...++ ....+..++|+++++.++
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-~~~elva~~d~~~~~~~----g~d~~~~~g~-------~~~~v~~~~dl~~~l~~~ 73 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSLL----GSDAGELAGA-------GKTGVTVQSSLDAVKDDF 73 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCTTC----SCCTTCSSSS-------SCCSCCEESCSTTTTTSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCchhhh----hhhHHHHcCC-------CcCCceecCCHHHHhcCC
Confidence 79999998 99999999988764 488877 7788653210 1000000000 012345677888777899
Q ss_pred cEEEEec
Q 011641 80 DIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|+||-++
T Consensus 74 DvVIDft 80 (273)
T 1dih_A 74 DVFIDFT 80 (273)
T ss_dssp SEEEECS
T ss_pred CEEEEcC
Confidence 9999554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0015 Score=60.05 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=52.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.|+ |.+|..++..|+++ |++|++++|++++.+.+......+..-++ ++...+++.++|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~D~--------------~d~~~~~~~~~d 64 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR--GHEVLAVVRDPQKAADRLGATVATLVKEP--------------LVLTEADLDSVD 64 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHTCTTSEEEECCG--------------GGCCHHHHTTCS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC--CCEEEEEEecccccccccCCCceEEeccc--------------ccccHhhcccCC
Confidence 79999997 99999999999998 99999999999988776542221111111 000014578999
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-|...
T Consensus 65 ~vi~~ag~ 72 (224)
T 3h2s_A 65 AVVDALSV 72 (224)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999765
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00053 Score=68.39 Aligned_cols=103 Identities=8% Similarity=0.044 Sum_probs=78.0
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||.....+... +
T Consensus 169 ~~l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~------------------------g 214 (345)
T 4g2n_A 169 MGLTGRRLGIFGMG----------RIGRAIATRARGFGLAIHYHNRTRLSHALEE------------------------G 214 (345)
T ss_dssp CCCTTCEEEEESCS----------HHHHHHHHHHHTTTCEEEEECSSCCCHHHHT------------------------T
T ss_pred cccCCCEEEEEEeC----------hhHHHHHHHHHHCCCEEEEECCCCcchhhhc------------------------C
Confidence 46789999999984 4789999999999999999999864432211 3
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..+.+++++.++++|+|+++++.. +-+.+--.+....|++.+++||+-+ ++|.+.+.
T Consensus 215 ~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 274 (345)
T 4g2n_A 215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALI 274 (345)
T ss_dssp CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHH
Confidence 456678999999999999999863 3333322456678998889999876 67765443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0003 Score=67.60 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=50.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||.|.|+|++|..++..|.++ |++|++++|++++.+.+......+.. +.+ +|++ +.++|
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~---~d~~--~~~~d 65 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNPDQMEAIRASGAEPLL------------WPG---EEPS--LDGVT 65 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCGGGHHHHHHTTEEEEE------------SSS---SCCC--CTTCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcChhhhhhHhhCCCeEEE------------ecc---cccc--cCCCC
Confidence 57999999999999999999998 99999999999887776542211110 001 1222 67899
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-|...
T Consensus 66 ~vi~~a~~ 73 (286)
T 3ius_A 66 HLLISTAP 73 (286)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99998753
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00073 Score=67.84 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=75.3
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||....+... .. +
T Consensus 172 ~~l~gktvGIIGlG----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~----------------------g 218 (365)
T 4hy3_A 172 RLIAGSEIGIVGFG----------DLGKALRRVLSGFRARIRVFDPWLPRSMLE-EN----------------------G 218 (365)
T ss_dssp CCSSSSEEEEECCS----------HHHHHHHHHHTTSCCEEEEECSSSCHHHHH-HT----------------------T
T ss_pred cccCCCEEEEecCC----------cccHHHHHhhhhCCCEEEEECCCCCHHHHh-hc----------------------C
Confidence 35789999999985 478999999999999999999986544322 21 2
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
+.+ .++++.++.+|+|+++++-. +-+++--.+..+.|++.+++||+-+ ++|.+.+
T Consensus 219 ~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL 276 (365)
T 4hy3_A 219 VEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDAL 276 (365)
T ss_dssp CEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHH
T ss_pred eee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHH
Confidence 333 48999999999999988764 3344333466788998889999975 6675443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00059 Score=69.69 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=52.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..+... |. +|+++|+++++.+.+.+.. + .......++.+.+.++|
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~--G~~~V~v~~r~~~ra~~la~~~------g----------~~~~~~~~l~~~l~~aD 229 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL------G----------GEAVRFDELVDHLARSD 229 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH------T----------CEECCGGGHHHHHHTCS
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc------C----------CceecHHhHHHHhcCCC
Confidence 5799999999999999999988 87 9999999998875554310 0 00000135566678999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+|.+
T Consensus 230 vVi~at~~~ 238 (404)
T 1gpj_A 230 VVVSATAAP 238 (404)
T ss_dssp EEEECCSSS
T ss_pred EEEEccCCC
Confidence 999998754
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=71.61 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=51.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC-------Ce-EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS-------IE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-------~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||||||+|.||...+..+... ++ .+ |.++|+++++.+.+.+.. +..++.+|+++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~-----------------g~~~~~~d~~~ 69 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKL-----------------GWSTTETDWRT 69 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESCHHH
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHH
Confidence 699999999999988887653 11 24 457899999988876420 12256789998
Q ss_pred hhc--cCcEEEEeccCCC
Q 011641 75 HVS--EADIVFVSVNTPT 90 (480)
Q Consensus 75 a~~--~aDvVii~Vptp~ 90 (480)
.++ +.|+|+||+|+..
T Consensus 70 ll~~~~iDaV~I~tP~~~ 87 (390)
T 4h3v_A 70 LLERDDVQLVDVCTPGDS 87 (390)
T ss_dssp HTTCTTCSEEEECSCGGG
T ss_pred HhcCCCCCEEEEeCChHH
Confidence 775 5899999988643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00022 Score=61.71 Aligned_cols=99 Identities=10% Similarity=0.002 Sum_probs=64.1
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.+|..++.+|.+. ||+ +|++|+.+... .+ .++.+..+++++.+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~--G~~--v~~vnp~~~~~------~i--------------~G~~~~~sl~el~~ 69 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYR--VLPVNPRFQGE------EL--------------FGEEAVASLLDLKE 69 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT--TCE--EEEECGGGTTS------EE--------------TTEECBSSGGGCCS
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC--CCE--EEEeCCCcccC------cC--------------CCEEecCCHHHCCC
Confidence 47999999 89999999999998 897 67777763100 00 13566677777666
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++|+|.. .+.++++++...-. ..+++..++. .+++.+..++.
T Consensus 70 ~vDlavi~vp~~---------------~~~~v~~~~~~~gi-~~i~~~~g~~----~~~~~~~a~~~ 116 (140)
T 1iuk_A 70 PVDILDVFRPPS---------------ALMDHLPEVLALRP-GLVWLQSGIR----HPEFEKALKEA 116 (140)
T ss_dssp CCSEEEECSCHH---------------HHTTTHHHHHHHCC-SCEEECTTCC----CHHHHHHHHHT
T ss_pred CCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEEEcCCcC----HHHHHHHHHHc
Confidence 899999999842 23344555544332 3555543332 35566666554
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00038 Score=66.90 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=65.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|||+|.+|.+++..|++. |.+|++++|++++.+.+.+- + +... ++++ +.++|+
T Consensus 119 k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~~ka~~la~~------------------~-~~~~-~~~~-l~~~Di 175 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQ--GLQVSVLNRSSRGLDFFQRL------------------G-CDCF-MEPP-KSAFDL 175 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTHHHHHHH------------------T-CEEE-SSCC-SSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC------------------C-CeEe-cHHH-hccCCE
Confidence 5799999999999999999998 89999999999988877620 0 1111 1222 348999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||-|+|.....+ ...+. +.+...++++.+|++.++.| .|
T Consensus 176 VInaTp~Gm~~~-----~~l~~-------~~l~~~l~~~~~v~D~vY~P-~T 214 (269)
T 3phh_A 176 IINATSASLHNE-----LPLNK-------EVLKGYFKEGKLAYDLAYGF-LT 214 (269)
T ss_dssp EEECCTTCCCCS-----CSSCH-------HHHHHHHHHCSEEEESCCSS-CC
T ss_pred EEEcccCCCCCC-----CCCCh-------HHHHhhCCCCCEEEEeCCCC-ch
Confidence 999977643220 01111 12222345688999988877 44
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00095 Score=66.73 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=77.7
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL-GDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+..+.+++|+|+|+.. -...+++.|. ..|.+|.+||+.....+...++
T Consensus 158 ~~~l~g~~vgIIG~G~----------IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~--------------------- 206 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGA----------IQKEIARKAVHGLGMKLVYYDVAPADAETEKAL--------------------- 206 (348)
T ss_dssp CCCSTTCEEEEECCSH----------HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH---------------------
T ss_pred CcCCCCCEEEEEEECH----------HHHHHHHHHHHhcCCEEEEECCCCcchhhHhhc---------------------
Confidence 3467899999999854 7899999999 9999999999976543322222
Q ss_pred cceEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCC--CChhhh
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNV--VDANKL 455 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~--~~~~~~ 455 (480)
++.+..++++.++++|+|+++++.. +.+.+=-.++...|++..+|+|+-+. .+.+.+
T Consensus 207 -g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL 266 (348)
T 2w2k_A 207 -GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDAL 266 (348)
T ss_dssp -TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred -CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHH
Confidence 2445567889999999999999875 35543324566788877799998774 554433
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00018 Score=71.67 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=53.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||||+|+|+||..++..|.++ ++.++. +.|+++++...+.+ .....+. .+...+.....+.+.+..++++.+.++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~-~~~~~v~~~~~~~~~v~~d~~~l~~~v 80 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYA-ASEEFIPRFEKEGFEVAGTLNDLLEKV 80 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEE-SSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHHHHHhcCccccc-cccccceeccCCceEEcCcHHHhccCC
Confidence 5999999999999999999875 467765 56887776665543 1112110 000000000011244556888877899
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|+|.
T Consensus 81 DvV~~aTp~ 89 (334)
T 2czc_A 81 DIIVDATPG 89 (334)
T ss_dssp SEEEECCST
T ss_pred CEEEECCCc
Confidence 999999774
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00068 Score=67.57 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=55.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHH-cCCCCCcCC-ChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWN-SDQLPIYEP-GLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~-~~~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+||||+|+|+||..++..|.++ ++.+|. +.|++++....+. ....+.+.. ..++++. ...+..+.+.++...
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~---~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFE---ESGIPVAGTVEDLIK 76 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHH---TTTCCCCCCHHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhc---ccccccccCHhHhhc
Confidence 57999999999999999999875 567765 5677755544333 222333221 2223222 234555667777667
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||.|+|.
T Consensus 77 ~vDvV~~aTp~ 87 (340)
T 1b7g_O 77 TSDIVVDTTPN 87 (340)
T ss_dssp HCSEEEECCST
T ss_pred CCCEEEECCCC
Confidence 89999999774
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00029 Score=65.11 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=50.5
Q ss_pred CcE-EEEEC-CChhHHHHHHHHH-HcCCCCeEEEEECCHH-HHHHHHc--CCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 1 MVK-ICCIG-AGYVGGPTMAVIA-LKCPSIEVAVVDISVS-RINAWNS--DQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mk-I~VIG-lG~~G~~lA~~La-~~~~G~~V~~~D~~~~-~v~~l~~--~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||| |.|.| .|.+|..++..|+ +. |++|++++|+++ +.+.+.. ....+.. +.+.-..++++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~------------~D~~d~~~~~~ 69 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT--DMHITLYGRQLKTRIPPEIIDHERVTVIE------------GSFQNPGXLEQ 69 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC--CCEEEEEESSHHHHSCHHHHTSTTEEEEE------------CCTTCHHHHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC--CceEEEEecCccccchhhccCCCceEEEE------------CCCCCHHHHHH
Confidence 566 99999 6999999999999 77 999999999998 7766631 1100000 01111123345
Q ss_pred hhccCcEEEEecc
Q 011641 75 HVSEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
+++++|+||.+..
T Consensus 70 ~~~~~d~vv~~ag 82 (221)
T 3r6d_A 70 AVTNAEVVFVGAM 82 (221)
T ss_dssp HHTTCSEEEESCC
T ss_pred HHcCCCEEEEcCC
Confidence 6788999999875
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00071 Score=67.11 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=75.6
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||.....+....+ ++
T Consensus 142 ~l~g~tvGIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~ 189 (330)
T 4e5n_A 142 GLDNATVGFLGMG----------AIGLAMADRLQGWGATLQYHEAKALDTQTEQRL----------------------GL 189 (330)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHH----------------------TE
T ss_pred ccCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhc----------------------Cc
Confidence 5689999999984 478899999999999999999987333322222 23
Q ss_pred EEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+. ++++.++.+|+|+++++.. +-+++=-.+..+.|++.+++||+-+ ++|.+.+
T Consensus 190 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL 246 (330)
T 4e5n_A 190 RQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246 (330)
T ss_dssp EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred eeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHH
Confidence 443 7899999999999998863 3344323567788988889999876 5665433
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=72.12 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=51.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||||+|+|+||..++..|.++ +++++.+ .|++++....+.. .....+. .+...+.......+.+..+.++.+.+
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~-~~~~~v~~~~~~~l~v~~~~~~~~~~ 78 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYV-AIPERVKLFEKAGIEVAGTVDDMLDE 78 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEE-SSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-CCcEEEEEEcCChhHHHHhcCCcchhhcc-ccccceeeecCCceEEcCCHHHHhcC
Confidence 68999999999999999999875 4677754 5776554443332 1111111 11110000001234444466666679
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 79 vDvV~~atp~ 88 (337)
T 1cf2_P 79 ADIVIDCTPE 88 (337)
T ss_dssp CSEEEECCST
T ss_pred CCEEEECCCc
Confidence 9999999774
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00066 Score=68.15 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=82.2
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+..+|+|+|+.. ....++..|.+.|.+|.+||......+.... .++..
T Consensus 21 ~~mkIgiIGlG~----------mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~ 68 (358)
T 4e21_A 21 QSMQIGMIGLGR----------MGADMVRRLRKGGHECVVYDLNVNAVQALER----------------------EGIAG 68 (358)
T ss_dssp -CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----------------------TTCBC
T ss_pred cCCEEEEECchH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------CCCEE
Confidence 457999999865 7899999999999999999986443222111 23556
Q ss_pred ecCHHhhcccc---cEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecC
Q 011641 403 VWDAYEATKDA---HGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGK 467 (480)
Q Consensus 403 ~~~~~~a~~~a---d~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~ 467 (480)
+.++.++++++ |+|+++++.+..++ -++.+...+++..+|||+.+.... +.+.+.|+.|...+.
T Consensus 69 ~~s~~e~~~~a~~~DvVi~~vp~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 69 ARSIEEFCAKLVKPRVVWLMVPAAVVDS-MLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp CSSHHHHHHHSCSSCEEEECSCGGGHHH-HHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred eCCHHHHHhcCCCCCEEEEeCCHHHHHH-HHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCC
Confidence 77899999999 99999998884433 235666777767799999998742 234456888877643
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0023 Score=63.20 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=70.3
Q ss_pred CcEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-
Q 011641 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV- 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~- 76 (480)
||||.|||+|.+|.+ +|..|.++ |++|+++|.++ ...+.|.+...+ +..-.+.+...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~~~~~~~~L~~~gi~-----------------v~~g~~~~~l~~ 64 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKMYPPMSTQLEALGID-----------------VYEGFDAAQLDE 64 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSCCTTHHHHHHHTTCE-----------------EEESCCGGGGGS
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCCCcHHHHHHHhCCCE-----------------EECCCCHHHcCC
Confidence 689999999999996 88888888 99999999864 234445432211 12223444423
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH----------HHHhh-CCCCcEEEEecCCCcchHHH-HHHHHHhc
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------VIADV-SKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~-l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
.++|+||++-.-|. |...+..+.+ -+... ++...+|-+..|..-.||.. +..+|++.
T Consensus 65 ~~~d~vV~Spgi~~-----------~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 65 FKADVYVIGNVAKR-----------GMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp CCCSEEEECTTCCT-----------TCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcCC-----------CCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 47999988743332 2222333322 12332 23346777777776666655 56777765
Q ss_pred C
Q 011641 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 134 g 134 (326)
T 3eag_A 134 G 134 (326)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00061 Score=59.14 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=63.0
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.+|..++..|.+. |++ +|++|+.. +.+ .++.+..++++...
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~--G~~--v~~Vnp~~-~~i---------------------~G~~~y~sl~~l~~ 76 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH--GYD--VYPVNPKY-EEV---------------------LGRKCYPSVLDIPD 76 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCE--EEEECTTC-SEE---------------------TTEECBSSGGGCSS
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC--CCE--EEEECCCC-CeE---------------------CCeeccCCHHHcCC
Confidence 47999999 79999999999988 897 56666542 100 13566677777666
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
.+|++++|+|.+ .+.++++++...-. ..+++ .++.. .+++.+..++.
T Consensus 77 ~vDlvvi~vp~~---------------~~~~vv~~~~~~gi-~~i~~-~~g~~---~~~l~~~a~~~ 123 (144)
T 2d59_A 77 KIEVVDLFVKPK---------------LTMEYVEQAIKKGA-KVVWF-QYNTY---NREASKKADEA 123 (144)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHHHHTC-SEEEE-CTTCC---CHHHHHHHHHT
T ss_pred CCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEEE-CCCch---HHHHHHHHHHc
Confidence 899999998842 34556666555322 34443 33222 35565665554
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00028 Score=71.16 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=49.1
Q ss_pred EEEEECCChhHHHHHHHHHHc------CCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 3 KICCIGAGYVGGPTMAVIALK------CPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~------~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||||+|.||...+..+... .++.+|+ ++|+++++.+++.+.. +.-++.+|+++.
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~el 89 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF-----------------GFEKATADWRAL 89 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH-----------------TCSEEESCHHHH
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh-----------------CCCeecCCHHHH
Confidence 699999999999877665431 1345654 6899999888776420 112567899987
Q ss_pred hc--cCcEEEEeccCCC
Q 011641 76 VS--EADIVFVSVNTPT 90 (480)
Q Consensus 76 ~~--~aDvVii~Vptp~ 90 (480)
++ +.|+|+||+|+..
T Consensus 90 l~~~~iDaV~IatP~~~ 106 (393)
T 4fb5_A 90 IADPEVDVVSVTTPNQF 106 (393)
T ss_dssp HHCTTCCEEEECSCGGG
T ss_pred hcCCCCcEEEECCChHH
Confidence 75 5799999988643
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00089 Score=64.83 Aligned_cols=108 Identities=9% Similarity=0.076 Sum_probs=77.6
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.||+|+|+.. ....++..|.+.|.+|.+||+.....+...+ .++....
T Consensus 2 ~~i~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~ 49 (287)
T 3pef_A 2 QKFGFIGLGI----------MGSAMAKNLVKAGCSVTIWNRSPEKAEELAA----------------------LGAERAA 49 (287)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----------------------TTCEECS
T ss_pred CEEEEEeecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 5899999865 7899999999999999999987554332221 2466778
Q ss_pred CHHhhcccccEEEEEecCc-ccccccH--HHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 405 DAYEATKDAHGVCILTEWD-EFKTLDY--QRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~-~~~~~~~--~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+ ..++.-+ +.+...+++..+|+|..+..... .+.+.|..|..
T Consensus 50 ~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~ 118 (287)
T 3pef_A 50 TPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE 118 (287)
T ss_dssp SHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 9999999999999999865 3333211 44556676667999998765432 23345777754
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0086 Score=56.88 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=75.6
Q ss_pred CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHh
Q 011641 64 KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.||++++|++|+-+|- .. .-..+++.|.+++++|.+|....|+|+-. +..+|+.
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPf--G~------------~t~~Iakkii~~lpEgAII~nTCTipp~~---ly~~le~ 189 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPK--GN------------KQPDIIKKFADAIPEGAIVTHACTIPTTK---FAKIFKD 189 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTT--CT------------THHHHHHHHGGGSCTTCEEEECSSSCHHH---HHHHHHH
T ss_pred cCcEeecchHHHhcCCCEEEEecCC--CC------------CcHHHHHHHHhhCcCCCEEecccCCCHHH---HHHHHHH
Confidence 4578999988999999999999663 21 12567899999999999999988998654 4445554
Q ss_pred cCCCCceEEe-eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEE
Q 011641 144 NSKGIKFQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL 205 (480)
Q Consensus 144 ~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~ 205 (480)
..+ .|+.+. |+|-- .||.. . +..+|.. ..+++..+++.+|-++... ..+.
T Consensus 190 l~R-~DvgIsS~HPaa-VPgt~-----G--q~~~g~~--yAtEEqIeklveLaksa~k-~ay~ 240 (358)
T 2b0j_A 190 LGR-EDLNITSYHPGC-VPEMK-----G--QVYIAEG--YASEEAVNKLYEIGKIARG-KAFK 240 (358)
T ss_dssp TTC-TTSEEEECBCSS-CTTTC-----C--CEEEEES--SSCHHHHHHHHHHHHHHHS-CEEE
T ss_pred hCc-ccCCeeccCCCC-CCCCC-----C--ccccccc--cCCHHHHHHHHHHHHHhCC-CeEe
Confidence 332 234433 56642 34441 1 2334532 3368889999998888753 4443
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00081 Score=68.17 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=35.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|.+|...+..+... |.+|+++|+++++.+.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4799999999999999988887 8899999999887776654
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00082 Score=66.63 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=46.3
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc-
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||. ..+..|.+. ++.+|+ ++|+++++ .++...+|+++.+++
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-~~~~lvav~d~~~~~-------------------------~g~~~~~~~~~ll~~~ 79 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-ANFKLVATASRHGTV-------------------------EGVNSYTTIEAMLDAE 79 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-TTEEEEEEECSSCCC-------------------------TTSEEESSHHHHHHHC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-CCeEEEEEEeCChhh-------------------------cCCCccCCHHHHHhCC
Confidence 5899999999998 688888875 577765 57887431 124567888887754
Q ss_pred --CcEEEEeccC
Q 011641 79 --ADIVFVSVNT 88 (480)
Q Consensus 79 --aDvVii~Vpt 88 (480)
.|+|++|+|+
T Consensus 80 ~~vD~V~i~tp~ 91 (330)
T 4ew6_A 80 PSIDAVSLCMPP 91 (330)
T ss_dssp TTCCEEEECSCH
T ss_pred CCCCEEEEeCCc
Confidence 8999999774
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.002 Score=65.31 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=65.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH------HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR------INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~------v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||+|||.|.-|.+-|.+|.+. |.+|++=-|.... .+...+ .++++. +++++
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDS--Gv~V~Vglr~~s~~e~~~S~~~A~~-------------------~Gf~v~-~~~eA 95 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATE-------------------NGFKVG-TYEEL 95 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT--TCEEEEEECHHHHHTTCHHHHHHHH-------------------TTCEEE-EHHHH
T ss_pred CEEEEeCCChHhHHHHhHHHhc--CCcEEEEeCCCCcccccchHHHHHH-------------------CCCEec-CHHHH
Confidence 5899999999999999999998 9999876552211 111111 234543 57888
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++.+|+|++-+|... -..+.+.|.+++++|..+.....
T Consensus 96 ~~~ADvV~~L~PD~~---------------q~~vy~~I~p~lk~G~~L~faHG 133 (491)
T 3ulk_A 96 IPQADLVINLTPDKQ---------------HSDVVRTVQPLMKDGAALGYSHG 133 (491)
T ss_dssp GGGCSEEEECSCGGG---------------HHHHHHHHGGGSCTTCEEEESSC
T ss_pred HHhCCEEEEeCChhh---------------HHHHHHHHHhhCCCCCEEEecCc
Confidence 999999999987422 13456789999999998876443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0085 Score=58.35 Aligned_cols=112 Identities=12% Similarity=0.085 Sum_probs=78.6
Q ss_pred hcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+..+.+++|+|+|+. .-+..+++.|...|++|.+|||.....+...+++
T Consensus 151 ~~~~l~g~~v~IiG~G----------~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g-------------------- 200 (300)
T 2rir_A 151 TDYTIHGSQVAVLGLG----------RTGMTIARTFAALGANVKVGARSSAHLARITEMG-------------------- 200 (300)
T ss_dssp CSSCSTTSEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------------------
T ss_pred cCCCCCCCEEEEEccc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC--------------------
Confidence 3457889999999974 4788999999999999999999764332211111
Q ss_pred cceEE--ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhhhhcCcEEEEe
Q 011641 398 KQVSV--VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKLREIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~--~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~~~~g~~y~~i 465 (480)
... ..++++.++++|+|+++++...+ +- ...+.|++..++||.-+- .+-+..+..|..++.+
T Consensus 201 --~~~~~~~~l~~~l~~aDvVi~~~p~~~i---~~-~~~~~mk~g~~lin~a~g~~~~~~~~a~~~G~~~i~~ 267 (300)
T 2rir_A 201 --LVPFHTDELKEHVKDIDICINTIPSMIL---NQ-TVLSSMTPKTLILDLASRPGGTDFKYAEKQGIKALLA 267 (300)
T ss_dssp --CEEEEGGGHHHHSTTCSEEEECCSSCCB---CH-HHHTTSCTTCEEEECSSTTCSBCHHHHHHHTCEEEEC
T ss_pred --CeEEchhhHHHHhhCCCEEEECCChhhh---CH-HHHHhCCCCCEEEEEeCCCCCcCHHHHHHCCCEEEEC
Confidence 111 25688889999999999997443 32 355778877899998652 1224445668777644
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0012 Score=65.20 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=78.1
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+..+|+|+|+.. ....++..|.+.|.+|.+||+.....+...+ .++..
T Consensus 30 ~~~~I~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~----------------------~g~~~ 77 (320)
T 4dll_A 30 YARKITFLGTGS----------MGLPMARRLCEAGYALQVWNRTPARAASLAA----------------------LGATI 77 (320)
T ss_dssp CCSEEEEECCTT----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHT----------------------TTCEE
T ss_pred CCCEEEEECccH----------HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----------------------CCCEe
Confidence 456999999865 7899999999999999999986543222111 24677
Q ss_pred ecCHHhhcccccEEEEEecCcc-cccccHH--HHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDE-FKTLDYQ--RIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~--~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
..++.++++++|+|+++++.+. .+.. .. .+.+.+++..+|||..+.... +.+++.|..|..
T Consensus 78 ~~~~~e~~~~aDvVi~~vp~~~~~~~v-~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~ 147 (320)
T 4dll_A 78 HEQARAAARDADIVVSMLENGAVVQDV-LFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD 147 (320)
T ss_dssp ESSHHHHHTTCSEEEECCSSHHHHHHH-HTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eCCHHHHHhcCCEEEEECCCHHHHHHH-HcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 8899999999999999998753 2221 11 345566667799999887643 123455777754
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00087 Score=65.19 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=74.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||.....+ ..
T Consensus 119 ~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~---------------------------~~ 161 (290)
T 3gvx_A 119 LLYGKALGILGYG----------GIGRRVAHLAKAFGMRVIAYTRSSVDQN---------------------------VD 161 (290)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSSCCCTT---------------------------CS
T ss_pred eeecchheeeccC----------chhHHHHHHHHhhCcEEEEEeccccccc---------------------------cc
Confidence 4678999999984 4788999999999999999999754321 13
Q ss_pred EEecCHHhhcccccEEEEEecC-cccccccHHHHHHhcCCCCEEEEcCC--CCChhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKTLDYQRIYDNMQKPAFVFDGRN--VVDANK 454 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~ 454 (480)
...+++++.++++|+|+++++. ++-+.+=-.+..+.|++..++||+-+ +.+.+.
T Consensus 162 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a 218 (290)
T 3gvx_A 162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218 (290)
T ss_dssp EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHH
T ss_pred cccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcc
Confidence 3556899999999999999986 44444333567788998889999875 556543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0013 Score=65.18 Aligned_cols=101 Identities=10% Similarity=0.162 Sum_probs=74.0
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+.. -+..+++.|...|.+|.+||+.....+....+ +
T Consensus 151 ~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g 198 (330)
T 2gcg_A 151 YGLTQSTVGIIGLGR----------IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF----------------------Q 198 (330)
T ss_dssp CCCTTCEEEEECCSH----------HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT----------------------T
T ss_pred cCCCCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEECCCCcchhHHHhc----------------------C
Confidence 356889999999865 78999999999999999999876532222211 2
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCC--CChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNV--VDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~--~~~~ 453 (480)
+.+. ++++.++++|+|+++++.. +.+++--.++.+.|++..++||+-+. .+.+
T Consensus 199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~ 254 (330)
T 2gcg_A 199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQD 254 (330)
T ss_dssp CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHH
Confidence 4444 7888999999999999875 33443224566788877799998774 5544
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0015 Score=65.69 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=67.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-EEe---cCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFS---TDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t---~d~~~a~~ 77 (480)
.+|.|+|+|.+|...+..+... |.+|+++|+++++.+.+.+-.. ..+ ... .+..+.+.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 229 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG----------------SRVELLYSNSAEIETAVA 229 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG----------------GGSEEEECCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhC----------------ceeEeeeCCHHHHHHHHc
Confidence 4799999999999999999987 8899999999999887764100 011 111 13445567
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
++|+||-|++.|... .+.+ ..+...+.++++.+|++.+..+.|
T Consensus 230 ~~DvVI~~~~~~~~~-------~~~l-----i~~~~~~~~~~g~~ivdv~~~~gg 272 (361)
T 1pjc_A 230 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGG 272 (361)
T ss_dssp TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCC
T ss_pred CCCEEEECCCcCCCC-------CCee-----cCHHHHhhCCCCCEEEEEecCCCC
Confidence 899999998765321 1110 012334567788888876654433
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00054 Score=66.41 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=49.0
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++||+|+| +|.||..++..+.+. +++++.+ +|+++... .|. ...++.. ....++.+++|+++.+.+
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~~~~----~G~------d~gel~G-~~~~gv~v~~dl~~ll~~ 88 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKGSSF----VDK------DASILIG-SDFLGVRITDDPESAFSN 88 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTTCTT----TTS------BGGGGTT-CSCCSCBCBSCHHHHTTS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccc----ccc------chHHhhc-cCcCCceeeCCHHHHhcC
Confidence 36899999 999999999988865 5788665 58764210 010 0111100 001246678899998899
Q ss_pred CcEEEEec
Q 011641 79 ADIVFVSV 86 (480)
Q Consensus 79 aDvVii~V 86 (480)
+|++|-+.
T Consensus 89 aDVvIDFT 96 (288)
T 3ijp_A 89 TEGILDFS 96 (288)
T ss_dssp CSEEEECS
T ss_pred CCEEEEcC
Confidence 99999774
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0012 Score=66.02 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=76.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||...... ...+ ++
T Consensus 165 ~l~g~tvGIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g~ 211 (347)
T 1mx3_A 165 RIRGETLGIIGLG----------RVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL----------------------GL 211 (347)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH----------------------TC
T ss_pred CCCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc----------------------CC
Confidence 5789999999984 4788999999999999999999866432 2222 23
Q ss_pred EEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+..++++.++++|+|+++++-. +.+++=-.+..+.|++..++||+-+ +.+.+.+
T Consensus 212 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL 269 (347)
T 1mx3_A 212 QRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKAL 269 (347)
T ss_dssp EECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHH
T ss_pred eecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHH
Confidence 45568899999999999998874 4444322456678988789999876 4565433
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=63.61 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=78.8
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..||+|+|+.+ ....++..|.+.|.+|.+||......+...+ .++..+
T Consensus 15 ~~~I~vIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~ 62 (296)
T 3qha_A 15 QLKLGYIGLGN----------MGAPMATRMTEWPGGVTVYDIRIEAMTPLAE----------------------AGATLA 62 (296)
T ss_dssp CCCEEEECCST----------THHHHHHHHTTSTTCEEEECSSTTTSHHHHH----------------------TTCEEC
T ss_pred CCeEEEECcCH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----------------------CCCEEc
Confidence 35899999866 7899999999999999999986654332221 246677
Q ss_pred cCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 404 WDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
+++.++++ +|+|+++++.+. .++ -++.+...+++..+|+|..+..... .+.+.|+.|..
T Consensus 63 ~~~~~~~~-aDvvi~~vp~~~~~~~-v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~ 128 (296)
T 3qha_A 63 DSVADVAA-ADLIHITVLDDAQVRE-VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD 128 (296)
T ss_dssp SSHHHHTT-SSEEEECCSSHHHHHH-HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEE
T ss_pred CCHHHHHh-CCEEEEECCChHHHHH-HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 89999999 999999999763 332 2356777777777999998876432 23345777754
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0018 Score=64.27 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=72.7
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+.. -+..+++.|...|.+|.+||+.... +....+ +
T Consensus 146 ~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~----------------------g 192 (334)
T 2dbq_A 146 YDVYGKTIGIIGLGR----------IGQAIAKRAKGFNMRILYYSRTRKE-EVEREL----------------------N 192 (334)
T ss_dssp CCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHH----------------------C
T ss_pred cCCCCCEEEEEccCH----------HHHHHHHHHHhCCCEEEEECCCcch-hhHhhc----------------------C
Confidence 357889999999865 7899999999999999999998766 322222 1
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
+.+ .+++++++++|+|+++++... .+++--.++...|++..++||+.+
T Consensus 193 ~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~sr 241 (334)
T 2dbq_A 193 AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIAR 241 (334)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence 333 478899999999999998765 444322466778887779999866
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0016 Score=66.09 Aligned_cols=103 Identities=9% Similarity=0.113 Sum_probs=77.1
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+||+.....+....+ +
T Consensus 187 ~~l~gktvGIIGlG----------~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~----------------------G 234 (393)
T 2nac_A 187 YDLEAMHVGTVAAG----------RIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL----------------------N 234 (393)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH----------------------T
T ss_pred ccCCCCEEEEEeEC----------HHHHHHHHHHHhCCCEEEEEcCCccchhhHhhc----------------------C
Confidence 35789999999984 578899999999999999999986544333322 2
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANK 454 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~ 454 (480)
+.+..++++.++++|+|+++++.. +-+++=-.+..+.|++.+++||+-+ +.+.+.
T Consensus 235 ~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~a 292 (393)
T 2nac_A 235 LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA 292 (393)
T ss_dssp CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHH
Confidence 444567899999999999998864 4444322456788988889999976 456433
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00056 Score=66.96 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=76.5
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+++||.. ....+++.|.+.|++|.+||......+.... .+.+.++
T Consensus 4 ~kIgfIGlG~----------MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~----------------------~Ga~~a~ 51 (300)
T 3obb_A 4 KQIAFIGLGH----------MGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----------------------AGASAAR 51 (300)
T ss_dssp CEEEEECCST----------THHHHHHHHHHTTCEEEEECSSHHHHHHHHH----------------------TTCEECS
T ss_pred CEEEEeeehH----------HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----------------------cCCEEcC
Confidence 5899999954 8899999999999999999976443322221 3467789
Q ss_pred CHHhhcccccEEEEEecCccc-ccc--cHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 405 DAYEATKDAHGVCILTEWDEF-KTL--DYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~~-~~~--~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
++.|+++++|+|+++...++- ++. ....+.+.+++..+|||+..+-.. +.+++.|+.|.--
T Consensus 52 s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDa 121 (300)
T 3obb_A 52 SARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA 121 (300)
T ss_dssp SHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred CHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEec
Confidence 999999999999998776541 111 001133344556799999998753 3445678888653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=66.28 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=49.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||.|.| .|.+|..++..|+++ |++|++++|++++.+.+..+ ..+. .+.+.-..+..++++++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~-~~~~------------~~Dl~d~~~~~~~~~~~ 68 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHPEKIKIENEH-LKVK------------KADVSSLDEVCEVCKGA 68 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT--TCEEEEECSCGGGCCCCCTT-EEEE------------CCCTTCHHHHHHHHTTC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEEcCcccchhccCc-eEEE------------EecCCCHHHHHHHhcCC
Confidence 58999999 599999999999998 99999999998754322110 0000 01111112344567889
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||-|...
T Consensus 69 d~vi~~a~~ 77 (227)
T 3dhn_A 69 DAVISAFNP 77 (227)
T ss_dssp SEEEECCCC
T ss_pred CEEEEeCcC
Confidence 999998764
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0022 Score=63.62 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=74.9
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||....+. ...+ +
T Consensus 161 ~~l~g~tvgIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g 207 (335)
T 2g76_A 161 TELNGKTLGILGLG----------RIGREVATRMQSFGMKTIGYDPIISPEV-SASF----------------------G 207 (335)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSSCHHH-HHHT----------------------T
T ss_pred cCCCcCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEECCCcchhh-hhhc----------------------C
Confidence 46789999999984 4778999999999999999999877642 2222 2
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+.+ .++++.++++|+|+++++... .+++=-.+..+.|++.+++||+-+ +.+.+
T Consensus 208 ~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~ 263 (335)
T 2g76_A 208 VQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEG 263 (335)
T ss_dssp CEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred cee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHH
Confidence 333 378999999999999988853 444322456788988889999766 45644
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0015 Score=64.89 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=67.1
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||..... ..
T Consensus 167 ~~l~gktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~---------------------------~~ 209 (340)
T 4dgs_A 167 HSPKGKRIGVLGLG----------QIGRALASRAEAFGMSVRYWNRSTLSG---------------------------VD 209 (340)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSCCTT---------------------------SC
T ss_pred ccccCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCcccc---------------------------cC
Confidence 46789999999984 478999999999999999999975431 12
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
..+..+++++++++|+|+++++-. +-+.+=-.+..+.|++..++||+-+ +.|.+
T Consensus 210 ~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~ 266 (340)
T 4dgs_A 210 WIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDED 266 (340)
T ss_dssp CEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC------
T ss_pred ceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHH
Confidence 345578999999999999998853 3333322456678888889999865 55544
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0018 Score=64.24 Aligned_cols=97 Identities=12% Similarity=0.221 Sum_probs=73.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+.. -+..+++.|.+.|++|.+||+....+ ....+ ++
T Consensus 143 ~l~g~~vgIIG~G~----------iG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~----------------------g~ 189 (333)
T 2d0i_A 143 SLYGKKVGILGMGA----------IGKAIARRLIPFGVKLYYWSRHRKVN-VEKEL----------------------KA 189 (333)
T ss_dssp CSTTCEEEEECCSH----------HHHHHHHHHGGGTCEEEEECSSCCHH-HHHHH----------------------TE
T ss_pred CCCcCEEEEEccCH----------HHHHHHHHHHHCCCEEEEECCCcchh-hhhhc----------------------Cc
Confidence 56889999999854 78899999999999999999987753 22222 23
Q ss_pred EEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCCh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDA 452 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~ 452 (480)
.+. +++++++++|+|+++++.. +.+++=-+++.+.|++. +++|+-+ +.+.
T Consensus 190 ~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~ 242 (333)
T 2d0i_A 190 RYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDE 242 (333)
T ss_dssp EEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCH
T ss_pred eec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCH
Confidence 443 7888899999999999987 55554334556788877 9999865 4454
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0025 Score=62.53 Aligned_cols=99 Identities=23% Similarity=0.279 Sum_probs=74.3
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||....+. ...+ ++
T Consensus 139 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g~ 185 (307)
T 1wwk_A 139 ELEGKTIGIIGFG----------RIGYQVAKIANALGMNILLYDPYPNEER-AKEV----------------------NG 185 (307)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHT----------------------TC
T ss_pred ccCCceEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-Hhhc----------------------Cc
Confidence 5688999999984 4788999999999999999999887632 2222 23
Q ss_pred EEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
.+ .++++.++++|+|+++++... .+++=-.+..+.|++..++||+-+ +++..
T Consensus 186 ~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~ 240 (307)
T 1wwk_A 186 KF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240 (307)
T ss_dssp EE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred cc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 33 378899999999999988743 444322456678888889999877 45644
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00035 Score=65.50 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=49.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecC---HHHh-hc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD---VEKH-VS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d---~~~a-~~ 77 (480)
++|.|+|+|.+|..+|..|.+. |+ |+++|+++++++.+..+ ..+.. +. .++ ++++ +.
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~~~~~~~~-~~~i~------------gd---~~~~~~l~~a~i~ 70 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKKVLRSG-ANFVH------------GD---PTRVSDLEKANVR 70 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGHHHHHHTT-CEEEE------------SC---TTCHHHHHHTTCT
T ss_pred CEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHHHHHHhcC-CeEEE------------cC---CCCHHHHHhcCcc
Confidence 5799999999999999999987 89 99999999998887632 11110 00 012 2222 67
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|.||++++.
T Consensus 71 ~ad~vi~~~~~ 81 (234)
T 2aef_A 71 GARAVIVDLES 81 (234)
T ss_dssp TCSEEEECCSC
T ss_pred hhcEEEEcCCC
Confidence 89999999763
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0029 Score=62.45 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=52.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEECCH--HHHH----HHHcCCCCCcCCChHHHHhhhcCCCEE
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--SRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~----~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|||.|+|. |.+|.+++..|..+ |+ +|+++|+++ ++.+ .+.....++ . +.++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~--g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~------------~-~di~ 69 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL------------L-AGLE 69 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT------------E-EEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc------------c-CCeE
Confidence 79999996 99999999999987 75 899999974 2222 222211111 0 2356
Q ss_pred EecCHHHhhccCcEEEEeccCCC
Q 011641 68 FSTDVEKHVSEADIVFVSVNTPT 90 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~ 90 (480)
.+++..++++++|+||.+-..+.
T Consensus 70 ~~~~~~~a~~~~D~Vih~Ag~~~ 92 (327)
T 1y7t_A 70 ATDDPKVAFKDADYALLVGAAPR 92 (327)
T ss_dssp EESCHHHHTTTCSEEEECCCCCC
T ss_pred eccChHHHhCCCCEEEECCCcCC
Confidence 66777788999999999876553
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=68.61 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=51.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|.+|..++..|++. |++|+++|+++++.+.+.+....+. .+ ...+.-..+..++++++|+
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~--G~~V~v~~R~~~~a~~la~~~~~~~------~~----~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHST------PI----SLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESSHHHHHHTTTTCTTEE------EE----ECCTTCHHHHHHHHTTSSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--cCEEEEEECCHHHHHHHHHhcCCce------EE----EeecCCHHHHHHHHcCCcE
Confidence 6799999999999999999987 8999999999998887764210000 00 0000000123455778999
Q ss_pred EEEeccC
Q 011641 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
||.|+|.
T Consensus 72 VIn~a~~ 78 (450)
T 1ff9_A 72 VISLIPY 78 (450)
T ss_dssp EEECCC-
T ss_pred EEECCcc
Confidence 9999874
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00073 Score=67.13 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=29.1
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||||+|+| .|++|..+...|.++ |.+++..+..+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-p~~el~~l~s~ 38 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-PHMNITALTVS 38 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-CCCcEEEEEec
Confidence 78999999 699999999999986 67888877543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00048 Score=67.81 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=46.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeE-EEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--- 76 (480)
+||+|||+|++|..++..+.++.++.++ .++|+++++ ...+.+.. +....+++.++.+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-----------------g~~~~~~~~e~ll~~~ 67 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-----------------GVTTTYAGVEGLIKLP 67 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-----------------TCCEESSHHHHHHHSG
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-----------------CCCcccCCHHHHHhcc
Confidence 5899999999999999999763356664 468998776 44443210 1112234445543
Q ss_pred --ccCcEEEEeccC
Q 011641 77 --SEADIVFVSVNT 88 (480)
Q Consensus 77 --~~aDvVii~Vpt 88 (480)
.++|+||+|+|+
T Consensus 68 ~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 68 EFADIDFVFDATSA 81 (312)
T ss_dssp GGGGEEEEEECSCH
T ss_pred CCCCCcEEEECCCh
Confidence 458999999773
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.002 Score=63.65 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=75.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcC-CCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDP-QVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+||| ....+. ...+ +
T Consensus 143 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~----------------------g 189 (320)
T 1gdh_A 143 KLDNKTLGIYGFG----------SIGQALAKRAQGFDMDIDYFDTHRASSSD-EASY----------------------Q 189 (320)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSCCCHHH-HHHH----------------------T
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcChhh-hhhc----------------------C
Confidence 4688999999984 4788999999999999999999 776532 2222 2
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCC--CChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNV--VDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~--~~~~ 453 (480)
+.+.+++++.++++|+|+++++.. +.+++=-....+.|++..++||+-+- ++.+
T Consensus 190 ~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~ 246 (320)
T 1gdh_A 190 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNE 246 (320)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHH
Confidence 345558899999999999999874 34443224566788887899999763 5644
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00061 Score=66.05 Aligned_cols=103 Identities=10% Similarity=0.030 Sum_probs=67.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+.. .. .+.+.+. ++++...++|
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------~~--~~~~~~~-~~~~l~~~aD 189 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQ--QPASITVTNRTFAKAEQLAELV------------AA--YGEVKAQ-AFEQLKQSYD 189 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--CCSEEEEEESSHHHHHHHHHHH------------GG--GSCEEEE-EGGGCCSCEE
T ss_pred CEEEEECchHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHh------------hc--cCCeeEe-eHHHhcCCCC
Confidence 4799999999999999999998 85 9999999999988776420 00 0123332 3344337899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+||-|+|.....+ .+.+. ...++++.+|++.++.|.. |..+
T Consensus 190 iIInaTp~gm~~~------~~~l~---------~~~l~~~~~V~DlvY~P~~-T~ll 230 (281)
T 3o8q_A 190 VIINSTSASLDGE------LPAID---------PVIFSSRSVCYDMMYGKGY-TVFN 230 (281)
T ss_dssp EEEECSCCCC----------CSCC---------GGGEEEEEEEEESCCCSSC-CHHH
T ss_pred EEEEcCcCCCCCC------CCCCC---------HHHhCcCCEEEEecCCCcc-CHHH
Confidence 9999987653210 01110 1345678888888877644 4444
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.004 Score=64.42 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=69.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH----HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS----RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~----~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||.|||+|..|.+.|..|+++ |++|+++|.++. ..+.|.+...+ +..-.+.++.+.
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~~gi~-----------------~~~g~~~~~~~~ 70 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKL--GAIVTVNDGKPFDENPTAQSLLEEGIK-----------------VVCGSHPLELLD 70 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHT--TCEEEEEESSCGGGCHHHHHHHHTTCE-----------------EEESCCCGGGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCCcccCChHHHHHHhCCCE-----------------EEECCChHHhhc
Confidence 5899999999999999999998 999999999642 33444432111 222223333345
Q ss_pred c-CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 78 E-ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 78 ~-aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+ +|+||++..-|.+ ...+..+.+ ++...+.+..+|-+..|..-.||.. +..+|++.+
T Consensus 71 ~~~d~vv~spgi~~~-----------~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 138 (451)
T 3lk7_A 71 EDFCYMIKNPGIPYN-----------NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG 138 (451)
T ss_dssp SCEEEEEECTTSCTT-----------SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCcCCCC-----------ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 5 8999887443321 122333222 1222223457777777776666555 567777643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00089 Score=62.47 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCC-CCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+|.|.|. |.+|..++..|+++ |++|++++|++++.+.+..... .+.. +.++ .+..+++.++
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~------------~Dl~--~~~~~~~~~~ 85 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNEEQGPELRERGASDIVV------------ANLE--EDFSHAFASI 85 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHTTCSEEEE------------CCTT--SCCGGGGTTC
T ss_pred CeEEEECCCChHHHHHHHHHHhC--CCeEEEEECChHHHHHHHhCCCceEEE------------cccH--HHHHHHHcCC
Confidence 78999996 99999999999998 9999999999998887765322 2111 1111 4456678899
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||-+...
T Consensus 86 D~vi~~ag~ 94 (236)
T 3e8x_A 86 DAVVFAAGS 94 (236)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999998764
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.005 Score=59.61 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=55.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEec--CHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (480)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+.. .. ......+...+ ++.+.+.+
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~~--------~~---~~~~~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALADVI--------NN---AVGREAVVGVDARGIEDVIAA 194 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSHHHHHHHHHHH--------HH---HHTSCCEEEECSTTHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHH--------Hh---hcCCceEEEcCHHHHHHHHhc
Confidence 4789999999999999999998 87 7999999999988775410 00 00011234444 67777889
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||-|+|..
T Consensus 195 ~DiVInaTp~G 205 (283)
T 3jyo_A 195 ADGVVNATPMG 205 (283)
T ss_dssp SSEEEECSSTT
T ss_pred CCEEEECCCCC
Confidence 99999997753
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0021 Score=61.79 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=66.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
+++.|+|+|.+|.++|..|++. |.+|++++|++++.+.+.+.... .+.+.. .+.++.. ..+|
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~--G~~V~v~~R~~~~~~~la~~~~~--------------~~~~~~-~~~~~~~~~~~D 182 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQA-LSMDELEGHEFD 182 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEE-CCSGGGTTCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHhhc--------------cCCeeE-ecHHHhccCCCC
Confidence 5799999999999999999998 89999999999988777642100 012222 2333322 4899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||-|+|.+...+ .+++. ...++++.++++.++.|..|
T Consensus 183 ivVn~t~~~~~~~------~~~i~---------~~~l~~~~~v~D~~y~p~~t 220 (271)
T 1nyt_A 183 LIINATSSGISGD------IPAIP---------SSLIHPGIYCYDMFYQKGKT 220 (271)
T ss_dssp EEEECCSCGGGTC------CCCCC---------GGGCCTTCEEEESCCCSSCC
T ss_pred EEEECCCCCCCCC------CCCCC---------HHHcCCCCEEEEeccCCcCC
Confidence 9999987543210 01110 12356788899888876444
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00078 Score=62.08 Aligned_cols=104 Identities=12% Similarity=0.186 Sum_probs=61.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhccC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~a 79 (480)
|||.|.| .|.+|..++..|+++ |++|++++|++++.+.+ ....+. .+.+.- ..++.++++++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~--~~~~~~------------~~D~~d~~~~~~~~~~~~ 64 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT--DYQIYAGARKVEQVPQY--NNVKAV------------HFDVDWTPEEMAKQLHGM 64 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS--SCEEEEEESSGGGSCCC--TTEEEE------------ECCTTSCHHHHHTTTTTC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCccchhhc--CCceEE------------EecccCCHHHHHHHHcCC
Confidence 7999999 799999999999998 99999999998654322 000000 011110 11234456789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||-|....... ....++.....+++.+.+. ..+.+|..+|
T Consensus 65 d~vi~~ag~~~~~-----~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS 106 (219)
T 3dqp_A 65 DAIINVSGSGGKS-----LLKVDLYGAVKLMQAAEKA-EVKRFILLST 106 (219)
T ss_dssp SEEEECCCCTTSS-----CCCCCCHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CEEEECCcCCCCC-----cEeEeHHHHHHHHHHHHHh-CCCEEEEECc
Confidence 9999998654321 1133444444455544332 2245554444
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00068 Score=63.46 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=48.8
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||+|.|.| .|.+|..++..|++. | ++|++++|++++.+.+......+. .+.++-..+.++++++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~--G~~~V~~~~R~~~~~~~~~~~~~~~~------------~~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK--QTIKQTLFARQPAKIHKPYPTNSQII------------MGDVLNHAALKQAMQG 88 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC--TTEEEEEEESSGGGSCSSCCTTEEEE------------ECCTTCHHHHHHHHTT
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC--CCceEEEEEcChhhhcccccCCcEEE------------EecCCCHHHHHHHhcC
Confidence 46799999 699999999999998 8 899999999876433221110000 0111111224456788
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.+.+.
T Consensus 89 ~D~vv~~a~~ 98 (236)
T 3qvo_A 89 QDIVYANLTG 98 (236)
T ss_dssp CSEEEEECCS
T ss_pred CCEEEEcCCC
Confidence 9999988653
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=64.86 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=74.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||..... . . ...
T Consensus 145 ~l~gktvgIiGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~~ 189 (343)
T 2yq5_A 145 EIYNLTVGLIGVG----------HIGSAVAEIFSAMGAKVIAYDVAYNPE-F-E-----------------------PFL 189 (343)
T ss_dssp CGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCGG-G-T-----------------------TTC
T ss_pred ccCCCeEEEEecC----------HHHHHHHHHHhhCCCEEEEECCChhhh-h-h-----------------------ccc
Confidence 4578999999985 477899999999999999999987542 1 1 113
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+. ++++.++++|+|+++++.. +-+. ++ .+..+.|++.+++||+-+ +++.+.+
T Consensus 190 ~~~-~l~ell~~aDvV~l~~Plt~~t~~li~-~~~l~~mk~gailIN~aRg~~vd~~aL 246 (343)
T 2yq5_A 190 TYT-DFDTVLKEADIVSLHTPLFPSTENMIG-EKQLKEMKKSAYLINCARGELVDTGAL 246 (343)
T ss_dssp EEC-CHHHHHHHCSEEEECCCCCTTTTTCBC-HHHHHHSCTTCEEEECSCGGGBCHHHH
T ss_pred ccc-CHHHHHhcCCEEEEcCCCCHHHHHHhh-HHHHhhCCCCcEEEECCCChhhhHHHH
Confidence 333 8999999999999999863 3333 34 456678998889999976 6665544
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00096 Score=69.37 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=52.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++|.|+|+|.+|.+++..|++. +|++|++++|++++.+.+.+. ..+. .+ ...+.-..++.++++++|
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~-~g~~V~v~~R~~~ka~~la~~-~~~~------~~----~~D~~d~~~l~~~l~~~D 90 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAAN-DDINVTVACRTLANAQALAKP-SGSK------AI----SLDVTDDSALDKVLADND 90 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHGG-GTCE------EE----ECCTTCHHHHHHHHHTSS
T ss_pred CCEEEEECChHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHh-cCCc------EE----EEecCCHHHHHHHHcCCC
Confidence 36899999999999999999986 368999999999998887642 0000 00 000000013445577899
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||.|+|.
T Consensus 91 vVIn~tp~ 98 (467)
T 2axq_A 91 VVISLIPY 98 (467)
T ss_dssp EEEECSCG
T ss_pred EEEECCch
Confidence 99999774
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0019 Score=64.95 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=77.2
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCE-EEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAR-LSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
..+.+++|+|+|+. .-...+++.|...|++ |.+||+.....+....+
T Consensus 160 ~~l~g~tvgIIG~G----------~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~---------------------- 207 (364)
T 2j6i_A 160 YDIEGKTIATIGAG----------RIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV---------------------- 207 (364)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT----------------------
T ss_pred ccCCCCEEEEECcC----------HHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc----------------------
Confidence 35789999999984 5789999999999997 99999876443332222
Q ss_pred ceEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
++....++++.++++|+|+++++.. +.+++=-....+.|++..++||+-+ +++.+.+
T Consensus 208 g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL 267 (364)
T 2j6i_A 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267 (364)
T ss_dssp TEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred CcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHH
Confidence 2445568999999999999999885 4444322456688988889999977 5665433
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0035 Score=62.91 Aligned_cols=115 Identities=15% Similarity=0.236 Sum_probs=69.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCC-----eEEEEECCHH----HHH----HHHcCCCCCcCCChHHHHhhhcCCCEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSI-----EVAVVDISVS----RIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~-----~V~~~D~~~~----~v~----~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
+||+||| +|.+|.++|-.++.. +. ++.++|.+.+ +++ .|+....++. ...+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~--~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~-------------~~v~ 97 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG--EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL-------------REVS 97 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-------------EEEE
T ss_pred CEEEEECCCChHHHHHHHHHHcC--CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhc-------------CCcE
Confidence 6899999 799999999999876 32 2777665432 222 2332221210 1356
Q ss_pred EecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 68 FSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+++..+++++||+||++-..|.... ..+.|+ +.+++..+.|.++..++.+|++ -|.|..+.-.
T Consensus 98 i~~~~y~~~~daDvVVitag~prkpG----~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlV-vsNPvD~~t~ 166 (375)
T 7mdh_A 98 IGIDPYEVFEDVDWALLIGAKPRGPG----MERAALLDINGQIFADQGKALNAVASKNVKVLV-VGNPCNTNAL 166 (375)
T ss_dssp EESCHHHHTTTCSEEEECCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHHH
T ss_pred EecCCHHHhCCCCEEEEcCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCchhHHHH
Confidence 66666677999999999876664331 112232 3344555566666455666554 3467665433
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0019 Score=68.27 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=75.7
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+.- -...+++.|.+.|.+|.+|||..+.+.. ..+ +
T Consensus 138 ~~l~g~~vgIIG~G~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~----------------------g 184 (529)
T 1ygy_A 138 TEIFGKTVGVVGLGR----------IGQLVAQRIAAFGAYVVAYDPYVSPARA-AQL----------------------G 184 (529)
T ss_dssp CCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECTTSCHHHH-HHH----------------------T
T ss_pred cccCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------C
Confidence 357889999999854 7789999999999999999998765432 222 2
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+... +++++++++|+|+++++.. +.+++=-+.+...|++..+|+|+-+ +.+..
T Consensus 185 ~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~ 240 (529)
T 1ygy_A 185 IELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240 (529)
T ss_dssp CEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred cEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHH
Confidence 3444 7889999999999999886 5555433456778887789999865 44543
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0031 Score=62.02 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=74.6
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||...... ...+ +
T Consensus 138 ~~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g 184 (313)
T 2ekl_A 138 LELAGKTIGIVGFG----------RIGTKVGIIANAMGMKVLAYDILDIREK-AEKI----------------------N 184 (313)
T ss_dssp CCCTTCEEEEESCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHT----------------------T
T ss_pred CCCCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCCcchhH-HHhc----------------------C
Confidence 35789999999984 4788999999999999999999877642 2222 2
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+.+ .++++.++++|+|+++++... .+++=-+...+.|++..++||+-+ +.+.+
T Consensus 185 ~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~ 240 (313)
T 2ekl_A 185 AKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGK 240 (313)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHH
T ss_pred cee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHH
Confidence 333 378899999999999998744 444322456678888789999866 45644
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00053 Score=71.24 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=39.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||.|+|+|.+|..+|..|... ||+|+++|.|+++++.+.+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~--~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE--NNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST--TEEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH
Confidence 9999999999999999999987 9999999999999998875
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0021 Score=62.50 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=48.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|+|+ |.||..++..+.+. |++ .++++|+.+. +. .. .++.+..+++++.+ .
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~--g~~-~V~~V~p~~~-----g~-~~--------------~G~~vy~sl~el~~~~~ 64 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY--GTK-MVGGVTPGKG-----GT-TH--------------LGLPVFNTVREAVAATG 64 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCe-EEEEeCCCcc-----cc-ee--------------CCeeccCCHHHHhhcCC
Confidence 68999998 99999999999987 888 4456665321 10 00 24677888888777 8
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|++++|+|.+
T Consensus 65 ~D~viI~tP~~ 75 (288)
T 2nu8_A 65 ATASVIYVPAP 75 (288)
T ss_dssp CCEEEECCCGG
T ss_pred CCEEEEecCHH
Confidence 99999998854
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0013 Score=64.52 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+-.+|+|+|+.. ....++..|.+.|.+|.+||+.....+...+ .++..
T Consensus 20 ~m~~I~iIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----------------------~g~~~ 67 (310)
T 3doj_A 20 HMMEVGFLGLGI----------MGKAMSMNLLKNGFKVTVWNRTLSKCDELVE----------------------HGASV 67 (310)
T ss_dssp CSCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----------------------TTCEE
T ss_pred cCCEEEEECccH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----------------------CCCeE
Confidence 446999999865 8899999999999999999987554332222 23567
Q ss_pred ecCHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
..++.++++++|+|++++..+. .++.- .+.+...+++..+|+|+.++.... .+.+.|..|..
T Consensus 68 ~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~ 138 (310)
T 3doj_A 68 CESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE 138 (310)
T ss_dssp CSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 7899999999999999997753 22211 023445566667999998876432 23355777754
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0014 Score=63.92 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=44.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHc--CCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALK--CPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~--~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++||+|||+|.||...+..+... .++.+++ ++|++.. .+ ..++. .+|+++.++
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~------------------~~g~~-~~~~~ell~ 62 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GS------------------LDEVR-QISLEDALR 62 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CE------------------ETTEE-BCCHHHHHH
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HH------------------HcCCC-CCCHHHHhc
Confidence 36899999999999999888651 1356665 5666420 00 01233 368888775
Q ss_pred --cCcEEEEeccCC
Q 011641 78 --EADIVFVSVNTP 89 (480)
Q Consensus 78 --~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 63 ~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 63 SQEIDVAYICSESS 76 (294)
T ss_dssp CSSEEEEEECSCGG
T ss_pred CCCCCEEEEeCCcH
Confidence 689999998754
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=63.08 Aligned_cols=93 Identities=9% Similarity=0.126 Sum_probs=71.7
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+.- -...+++.|...|.+|.+||+..... .+
T Consensus 160 ~~l~g~~vgIIG~G~----------iG~~vA~~l~~~G~~V~~~dr~~~~~---------------------------~g 202 (333)
T 3ba1_A 160 TKFSGKRVGIIGLGR----------IGLAVAERAEAFDCPISYFSRSKKPN---------------------------TN 202 (333)
T ss_dssp CCCTTCCEEEECCSH----------HHHHHHHHHHTTTCCEEEECSSCCTT---------------------------CC
T ss_pred cccCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEECCCchhc---------------------------cC
Confidence 367889999999854 78999999999999999999875421 02
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
.....+++++++++|+|+++++.. +.+.+=-.+..+.|++..+|||+-+-
T Consensus 203 ~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG 253 (333)
T 3ba1_A 203 YTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRG 253 (333)
T ss_dssp SEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCG
T ss_pred ceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 334568899999999999999874 45553224556788877799998773
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0027 Score=64.71 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=74.6
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||..... ...
T Consensus 141 ~el~gktlGiIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------------------~~~ 184 (404)
T 1sc6_A 141 FEARGKKLGIIGYG----------HIGTQLGILAESLGMYVYFYDIENKLP--------------------------LGN 184 (404)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCC--------------------------CTT
T ss_pred cccCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEEcCCchhc--------------------------cCC
Confidence 35789999999985 478899999999999999999964321 012
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
+....++++.++.+|+|+++++.. +-+++=-.+..+.|++..++||+-+ +.+.+
T Consensus 185 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~ 241 (404)
T 1sc6_A 185 ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP 241 (404)
T ss_dssp CEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred ceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHH
Confidence 445668999999999999999885 3444322456678998889999976 55644
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0003 Score=65.34 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=44.2
Q ss_pred cEEEEECCChhHHHHHHH--HHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAV--IALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~--La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+|||+|.+|..+|.. +... |++++ ++|.|++++.....+ . .+...+++++.++.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~--g~~iVg~~D~dp~k~g~~i~g-v-----------------~V~~~~dl~eli~~ 145 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN--NTKISMAFDINESKIGTEVGG-V-----------------PVYNLDDLEQHVKD 145 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC--------CCEEEEEESCTTTTTCEETT-E-----------------EEEEGGGHHHHCSS
T ss_pred CEEEEEccCHHHHHHHHHHhcccC--CcEEEEEEeCCHHHHHhHhcC-C-----------------eeechhhHHHHHHh
Confidence 579999999999999994 3333 77765 679998865332211 0 13345677777765
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|++++|+|+
T Consensus 146 ~D~ViIAvPs 155 (215)
T 2vt3_A 146 ESVAILTVPA 155 (215)
T ss_dssp CCEEEECSCH
T ss_pred CCEEEEecCc
Confidence 6999999884
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0034 Score=54.01 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=73.6
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|+|+|++-++ ++.+..+++.|.+.|++|...||.... + .++..
T Consensus 13 ~p~~IavIGaS~~~------g~~G~~~~~~L~~~G~~V~~vnp~~~~--i-------------------------~G~~~ 59 (138)
T 1y81_A 13 EFRKIALVGASKNP------AKYGNIILKDLLSKGFEVLPVNPNYDE--I-------------------------EGLKC 59 (138)
T ss_dssp -CCEEEEETCCSCT------TSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEEC
T ss_pred CCCeEEEEeecCCC------CCHHHHHHHHHHHCCCEEEEeCCCCCe--E-------------------------CCeee
Confidence 56799999998766 578899999999999999999997421 1 23556
Q ss_pred ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh---hhhhcCcEEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN---KLREIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~---~~~~~g~~y~~ 464 (480)
..|+.+..+..|+++++++-+.-.+ -..++.+ ...+.++++.... ..+ ..++.|++|.|
T Consensus 60 ~~s~~el~~~vDlvii~vp~~~v~~-v~~~~~~-~g~~~i~~~~~~~-~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 60 YRSVRELPKDVDVIVFVVPPKVGLQ-VAKEAVE-AGFKKLWFQPGAE-SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp BSSGGGSCTTCCEEEECSCHHHHHH-HHHHHHH-TTCCEEEECTTSC-CHHHHHHHHHHTCEEEC
T ss_pred cCCHHHhCCCCCEEEEEeCHHHHHH-HHHHHHH-cCCCEEEEcCccH-HHHHHHHHHHCCCEEEc
Confidence 6788888888999999998432222 1233444 3445578887654 432 34567888855
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0035 Score=62.23 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=33.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-EC--CHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI--SVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~--~~~~v~~l~~ 44 (480)
+||||+|.|++|..++..|.++ ++.+|.++ |+ +++....+.+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-~~vevvaI~d~~~~~~~~a~l~~ 48 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-GKVDIVAINDPFIDLNYMVYMFQ 48 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CSSEEEEEECSSSCHHHHHHHHH
T ss_pred eEEEEEccCHHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHHhh
Confidence 4999999999999999998876 57887755 53 7777766553
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=65.50 Aligned_cols=88 Identities=22% Similarity=0.135 Sum_probs=63.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|..+|..|+.. |.+|+++|+++.+.+..... ... ..+.++++..+|+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~~-------------------g~d-v~~lee~~~~aDv 323 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATME-------------------GLQ-VLTLEDVVSEADI 323 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCE-ECCGGGTTTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-------------------CCc-cCCHHHHHHhcCE
Confidence 4789999999999999999998 99999999999876654431 122 2456677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++.+.+++.- .+ ......++++.+|++.+-
T Consensus 324 Vi~atG~~~v---------l~--------~e~l~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 324 FVTTTGNKDI---------IM--------LDHMKKMKNNAIVCNIGH 353 (488)
T ss_dssp EEECSSCSCS---------BC--------HHHHTTSCTTEEEEESSS
T ss_pred EEeCCCChhh---------hh--------HHHHHhcCCCeEEEEcCC
Confidence 9988654321 11 223456788888887553
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0019 Score=63.80 Aligned_cols=103 Identities=8% Similarity=0.052 Sum_probs=74.7
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+||+.....+. ...
T Consensus 133 ~~l~gktvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------------------~~~ 178 (324)
T 3evt_A 133 STLTGQQLLIYGTG----------QIGQSLAAKASALGMHVIGVNTTGHPADH------------------------FHE 178 (324)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSCCCCTT------------------------CSE
T ss_pred ccccCCeEEEECcC----------HHHHHHHHHHHhCCCEEEEECCCcchhHh------------------------Hhh
Confidence 46789999999984 47899999999999999999987543210 011
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.....++++.++++|+|+++++-. +-+++=-.+..+.|++.+++||+-+ +.+.+.+.
T Consensus 179 ~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~ 238 (324)
T 3evt_A 179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALM 238 (324)
T ss_dssp EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHH
T ss_pred ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHH
Confidence 122357889999999999998863 3344322456778988889999976 66655433
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0032 Score=64.15 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=72.1
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||..... ....
T Consensus 153 el~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~yd~~~~~~--------------------------~~~~ 196 (416)
T 3k5p_A 153 EVRGKTLGIVGYG----------NIGSQVGNLAESLGMTVRYYDTSDKLQ--------------------------YGNV 196 (416)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECTTCCCC--------------------------BTTB
T ss_pred cCCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCcchhc--------------------------ccCc
Confidence 3578999999984 478899999999999999999863211 0123
Q ss_pred EEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
....++++.++.+|+|+++++..+ -+++=-.+..+.|++.+++||+.+ +.|.+.+
T Consensus 197 ~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL 254 (416)
T 3k5p_A 197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEAL 254 (416)
T ss_dssp EECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHH
T ss_pred EecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHH
Confidence 456789999999999999988733 333322456678998889999876 5665443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0037 Score=62.05 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=75.9
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|..-|.+|.+|||...+.... ..
T Consensus 137 ~~l~g~tvGIiG~G----------~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------------------~~ 182 (334)
T 3kb6_A 137 RELNRLTLGVIGTG----------RIGSRVAMYGLAFGMKVLCYDVVKREDLKE------------------------KG 182 (334)
T ss_dssp CCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHHHH------------------------TT
T ss_pred ceecCcEEEEECcc----------hHHHHHHHhhcccCceeeecCCccchhhhh------------------------cC
Confidence 35678999999975 467899999999999999999986653221 12
Q ss_pred eEEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.. ..++++.++.+|+|+++++.. +-++ ++-+. .+.|++.+++|.+-+ ++|.+.+-
T Consensus 183 ~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~-l~~mk~~a~lIN~aRG~iVde~aL~ 241 (334)
T 3kb6_A 183 CV-YTSLDELLKESDVISLHVPYTKETHHMINEER-ISLMKDGVYLINTARGKVVDTDALY 241 (334)
T ss_dssp CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH-HHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHH-HhhcCCCeEEEecCccccccHHHHH
Confidence 23 357899999999999998873 3334 55554 568998889999866 88876544
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0011 Score=65.69 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=47.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||+|||+|.+|...+..| . ++.+|+ ++|+++ ++.+.+.+. .++. .-..+..+|+++.++
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~--~~~~lvav~d~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~ll~~ 65 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-D--EECSITGIAPGVPEEDLSKLEKA------------ISEM-NIKPKKYNNWWEMLEK 65 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-C--TTEEEEEEECSSTTCCCHHHHHH------------HHTT-TCCCEECSSHHHHHHH
T ss_pred ceEEEEEccchhHHHHHHhc-C--CCcEEEEEecCCchhhHHHHHHH------------HHHc-CCCCcccCCHHHHhcC
Confidence 46999999999988777766 3 378876 588887 333332210 0000 001356788888775
Q ss_pred -cCcEEEEeccCC
Q 011641 78 -EADIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
+.|+|+||+|+.
T Consensus 66 ~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 66 EKPDILVINTVFS 78 (337)
T ss_dssp HCCSEEEECSSHH
T ss_pred CCCCEEEEeCCcc
Confidence 589999997753
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0038 Score=59.79 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=55.2
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.| .+|.++|..|... |..|+++++. +.++++.++.||
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~--gAtVtv~~~~---------------------------------t~~L~~~~~~AD 195 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNR--NYTVSVCHSK---------------------------------TKDIGSMTRSSK 195 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHHSS
T ss_pred CEEEEEcCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------cccHHHhhccCC
Confidence 479999987 5899999999998 8999998752 235567789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|... . ...++++.+||+.++
T Consensus 196 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi 223 (276)
T 3ngx_A 196 IVVVAVGRPGFL---------N-----------REMVTPGSVVIDVGI 223 (276)
T ss_dssp EEEECSSCTTCB---------C-----------GGGCCTTCEEEECCC
T ss_pred EEEECCCCCccc---------c-----------HhhccCCcEEEEecc
Confidence 999999876321 1 134688998887543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0013 Score=63.41 Aligned_cols=104 Identities=10% Similarity=0.080 Sum_probs=65.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-cCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
++|.|+|+|.+|.++|..|++. |.+|++++|++++.+.+.+.. .. .+.+.+ .+.++..+ .+|
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~--G~~v~v~~R~~~~a~~l~~~~------------~~--~~~~~~-~~~~~~~~~~~D 182 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQA-VSMDSIPLQTYD 182 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEE-EEGGGCCCSCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc------------cc--cCCeEE-eeHHHhccCCCC
Confidence 5799999999999999999998 899999999999888776410 00 012322 23333223 899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+||-|+|.+...+ .+++. . ..++++.+|++.++.|...+..+
T Consensus 183 ivIn~t~~~~~~~------~~~i~------~---~~l~~~~~v~D~~y~p~~~t~ll 224 (272)
T 1p77_A 183 LVINATSAGLSGG------TASVD------A---EILKLGSAFYDMQYAKGTDTPFI 224 (272)
T ss_dssp EEEECCCC-------------CCC------H---HHHHHCSCEEESCCCTTSCCHHH
T ss_pred EEEECCCCCCCCC------CCCCC------H---HHcCCCCEEEEeeCCCCcCCHHH
Confidence 9999987543210 00110 0 11235678888888766524433
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0031 Score=61.94 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=78.7
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEEcCCC--ChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA-RLSIYDPQV--TEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
..+|+|+|+.. ....++..|.+.|. +|.+||+.. ...+...+ .++
T Consensus 24 ~~~I~iIG~G~----------mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~----------------------~g~ 71 (312)
T 3qsg_A 24 AMKLGFIGFGE----------AASAIASGLRQAGAIDMAAYDAASAESWRPRAEE----------------------LGV 71 (312)
T ss_dssp -CEEEEECCSH----------HHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH----------------------TTC
T ss_pred CCEEEEECccH----------HHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH----------------------CCC
Confidence 45899999865 78999999999999 999999863 22221111 246
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhc--CcEEEE
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREI--GFIVYS 464 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~--g~~y~~ 464 (480)
....++.++++++|+|+++++-+...+ -.+.+...+++..+|||...+... +.+.+. |..|..
T Consensus 72 ~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd 142 (312)
T 3qsg_A 72 SCKASVAEVAGECDVIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA 142 (312)
T ss_dssp EECSCHHHHHHHCSEEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEeCCHHHHHhcCCEEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence 677899999999999999998877554 245677777666799999887653 223344 777754
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0014 Score=63.38 Aligned_cols=108 Identities=7% Similarity=0.015 Sum_probs=75.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.||+|+|+.. ....++..|.+.|.+|.+||+.....+.... .++...+
T Consensus 2 ~~I~iiG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~ 49 (287)
T 3pdu_A 2 TTYGFLGLGI----------MGGPMAANLVRAGFDVTVWNRNPAKCAPLVA----------------------LGARQAS 49 (287)
T ss_dssp CCEEEECCST----------THHHHHHHHHHHTCCEEEECSSGGGGHHHHH----------------------HTCEECS
T ss_pred CeEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999855 7899999999999999999987554332221 2356778
Q ss_pred CHHhhcccccEEEEEecCc-ccccccH--HHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 405 DAYEATKDAHGVCILTEWD-EFKTLDY--QRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~-~~~~~~~--~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+ ..++.-. +.+...+++..+|+|+....... .+.+.|..|..
T Consensus 50 ~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~ 118 (287)
T 3pdu_A 50 SPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLE 118 (287)
T ss_dssp CHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999876 3332110 23445566667999998865421 22345777754
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0038 Score=64.99 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|+.. ....++..|.++|++|.+||......+...+.+ . .-..+..+
T Consensus 4 ~~kIgiIGlG~----------MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g---~--------------~g~~i~~~ 56 (484)
T 4gwg_A 4 QADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE---A--------------KGTKVVGA 56 (484)
T ss_dssp CBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT---T--------------TTSSCEEC
T ss_pred CCEEEEEChhH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcc---c--------------CCCceecc
Confidence 46899999865 889999999999999999998765433222110 0 00134456
Q ss_pred cCHHhhcc---cccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEecC
Q 011641 404 WDAYEATK---DAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIGK 467 (480)
Q Consensus 404 ~~~~~a~~---~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG~ 467 (480)
.++.++++ ++|+|+++++.+ ..++ -.+.+...+++..+|||+.+.... +.+.+.|+.|.+.+.
T Consensus 57 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pV 129 (484)
T 4gwg_A 57 QSLKEMVSKLKKPRRIILLVKAGQAVDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGV 129 (484)
T ss_dssp SSHHHHHHTBCSSCEEEECSCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCHHHHHhhccCCCEEEEecCChHHHHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCc
Confidence 78888776 599999999986 3333 246777778777799999998853 234466898987754
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0027 Score=57.32 Aligned_cols=73 Identities=29% Similarity=0.328 Sum_probs=48.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|.|.|. |.+|..++..|+++ |++|+++++++++.+.+......+.. +.+.-..++.++++++|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~~~~~~~~~~~~~d 69 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVV------------GDVLQAADVDKTVAGQD 69 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEEE------------SCTTSHHHHHHHHTTCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--CCeEEEEEeChhhcccccCCceEEEE------------ecCCCHHHHHHHHcCCC
Confidence 68999997 99999999999998 99999999998654221111000000 00100112345677899
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-+...
T Consensus 70 ~vi~~a~~ 77 (206)
T 1hdo_A 70 AVIVLLGT 77 (206)
T ss_dssp EEEECCCC
T ss_pred EEEECccC
Confidence 99998764
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0041 Score=60.81 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=71.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||... +. . .
T Consensus 121 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~dr~~~-~~--~-------------------------~ 162 (303)
T 1qp8_A 121 LIQGEKVAVLGLG----------EIGTRVGKILAALGAQVRGFSRTPK-EG--P-------------------------W 162 (303)
T ss_dssp CCTTCEEEEESCS----------THHHHHHHHHHHTTCEEEEECSSCC-CS--S-------------------------S
T ss_pred CCCCCEEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCcc-cc--C-------------------------c
Confidence 4788999999984 5789999999999999999998754 11 0 1
Q ss_pred EEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
....++++.++.+|+|+++++.. +.+++=-.+..+.|++..++||+-+ +.+.+
T Consensus 163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~ 218 (303)
T 1qp8_A 163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRD 218 (303)
T ss_dssp CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHH
Confidence 12357789999999999999886 3444322456788988889999976 45543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0047 Score=64.42 Aligned_cols=117 Identities=15% Similarity=0.235 Sum_probs=80.6
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.++.++|+|+|+. +....++..|.++|.+|.+||......+...... + -.++
T Consensus 12 ~~~~~~IgvIGlG----------~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~--------~----------~~gi 63 (480)
T 2zyd_A 12 HMSKQQIGVVGMA----------VMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--------P----------GKKL 63 (480)
T ss_dssp ---CBSEEEECCS----------HHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS--------T----------TSCE
T ss_pred ccCCCeEEEEccH----------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC--------C----------CCCe
Confidence 3577899999985 4889999999999999999998644322111100 0 0246
Q ss_pred EEecCHHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEec
Q 011641 401 SVVWDAYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSIG 466 (480)
Q Consensus 401 ~~~~~~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~iG 466 (480)
..+.++.+++++ +|+|+++++.+ ..++. .+.+...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 64 ~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v-l~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~p 138 (480)
T 2zyd_A 64 VPYYTVKEFVESLETPRRILLMVKAGAGTDAA-IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTG 138 (480)
T ss_dssp EECSSHHHHHHTBCSSCEEEECSCSSSHHHHH-HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCc
Confidence 777889998887 99999999985 44442 356666776656999999988532 2334577776554
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0035 Score=62.38 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=51.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHHHHHHc-CCCCCcCCC-hHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNS-DQLPIYEPG-LDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-~~~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+||||+|+|.+|..++..|..+ ++++|.+ .|.+++....+.+ .....+..- ...-+.....+.+.+..+..+...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~-~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~ 80 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQ-DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE 80 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc
Confidence 35999999999999999999875 4677664 4666665554432 111111110 011110001123444445566567
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||.|+|.
T Consensus 81 ~vDiV~eatg~ 91 (343)
T 2yyy_A 81 DADIVVDGAPK 91 (343)
T ss_dssp GCSEEEECCCT
T ss_pred CCCEEEECCCc
Confidence 99999999663
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0051 Score=60.12 Aligned_cols=111 Identities=8% Similarity=0.011 Sum_probs=76.9
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
....+|+|+|+.. ....++..|.+.|.+|.+||+.....+.... .++.
T Consensus 7 ~~~~~IgiIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~ 54 (306)
T 3l6d_A 7 SFEFDVSVIGLGA----------MGTIMAQVLLKQGKRVAIWNRSPGKAAALVA----------------------AGAH 54 (306)
T ss_dssp CCSCSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHH----------------------HTCE
T ss_pred cCCCeEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------------------CCCe
Confidence 3457899999865 7899999999999999999986543222211 2356
Q ss_pred EecCHHhhcccccEEEEEecCcc-cccc-cHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEe
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE-FKTL-DYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSI 465 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~-~~~~-~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~i 465 (480)
...++.++++++|+|+++++.+. .++. ..+.+.. +.+..+|||+...-... .+++.|..|..-
T Consensus 55 ~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda 125 (306)
T 3l6d_A 55 LCESVKAALSASPATIFVLLDNHATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG 125 (306)
T ss_dssp ECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred ecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence 67899999999999999998764 3331 1013333 34456999998876532 234568888653
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0092 Score=60.89 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCc
Q 011641 315 VASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSP 394 (480)
Q Consensus 315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
.+..+..+.+++|+|+|++ .-...+++.|...|++|.+|||..........
T Consensus 202 ~ratg~~L~GktVgIiG~G----------~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~------------------- 252 (436)
T 3h9u_A 202 KRATDVMIAGKTACVCGYG----------DVGKGCAAALRGFGARVVVTEVDPINALQAAM------------------- 252 (436)
T ss_dssp HHHHCCCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-------------------
T ss_pred HHhcCCcccCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCChhhhHHHHH-------------------
Confidence 3334567889999999963 36889999999999999999996432211111
Q ss_pred ccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhhhhcCcEEEEec
Q 011641 395 TMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKLREIGFIVYSIG 466 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~~~~g~~y~~iG 466 (480)
.+..+ .+++++++++|++++.+..... ++. +..+.|++.++|++.-+- +|.+.+........++-
T Consensus 253 ---~G~~~-~sL~eal~~ADVVilt~gt~~i--I~~-e~l~~MK~gAIVINvgRg~vEID~~~L~~~~~~~~~ir 320 (436)
T 3h9u_A 253 ---EGYQV-LLVEDVVEEAHIFVTTTGNDDI--ITS-EHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVK 320 (436)
T ss_dssp ---TTCEE-CCHHHHTTTCSEEEECSSCSCS--BCT-TTGGGCCTTEEEEECSSSGGGBCHHHHHHHCSEEEEEE
T ss_pred ---hCCee-cCHHHHHhhCCEEEECCCCcCc--cCH-HHHhhcCCCcEEEEeCCCCCccCHHHHHhhcCceEeec
Confidence 12333 4899999999999986654433 332 345678888899998652 56666766666666664
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0016 Score=64.35 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=72.6
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+||+....... ....
T Consensus 137 ~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------------------~~~~ 182 (324)
T 3hg7_A 137 GLKGRTLLILGTG----------SIGQHIAHTGKHFGMKVLGVSRSGRERAG------------------------FDQV 182 (324)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCCTT------------------------CSEE
T ss_pred ccccceEEEEEEC----------HHHHHHHHHHHhCCCEEEEEcCChHHhhh------------------------hhcc
Confidence 5689999999984 57899999999999999999987532210 0112
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
....++++.++++|+|+++++-. +-+. ++ .+..+.|++.+++||+-+ ++|.+.+
T Consensus 183 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~gailIN~aRG~~vde~aL 240 (324)
T 3hg7_A 183 YQLPALNKMLAQADVIVSVLPATRETHHLFT-ASRFEHCKPGAILFNVGRGNAINEGDL 240 (324)
T ss_dssp ECGGGHHHHHHTCSEEEECCCCCSSSTTSBC-TTTTTCSCTTCEEEECSCGGGBCHHHH
T ss_pred cccCCHHHHHhhCCEEEEeCCCCHHHHHHhH-HHHHhcCCCCcEEEECCCchhhCHHHH
Confidence 22467899999999999998853 3333 33 345677888889999976 6665433
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0013 Score=64.69 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=49.9
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-E--e--cCHHHh
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-F--S--TDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~--t--~d~~~a 75 (480)
.++.|||.|. +|.++|..|... |..|+++|++..+....... +.. . ....+ + + .++++.
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~--gAtVtv~nR~~~~l~~ra~~---la~--------~--~~~~t~~~~t~~~~L~e~ 242 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQKFTRGES---LKL--------N--KHHVEDLGEYSEDLLKKC 242 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEEEEESCCC---SSC--------C--CCEEEEEEECCHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHHHC--CCEEEEEeCchHHHHhHHHH---Hhh--------h--cccccccccccHhHHHHH
Confidence 4799999996 599999999988 89999999974332111110 000 0 00111 1 2 577888
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
++.||+||.+++.|
T Consensus 243 l~~ADIVIsAtg~p 256 (320)
T 1edz_A 243 SLDSDVVITGVPSE 256 (320)
T ss_dssp HHHCSEEEECCCCT
T ss_pred hccCCEEEECCCCC
Confidence 99999999999876
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0016 Score=66.44 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=37.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCC---CeEEEEECCHHHHHHHHc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNS 44 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~ 44 (480)
||||+|+|+|.+|..++..|+++ | .+|+++|+++++.+.+.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~--g~~~~~V~v~~r~~~~~~~la~ 45 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN--REVFSHITLASRTLSKCQEIAQ 45 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC--TTTCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEEECCHHHHHHHHH
Confidence 78999999999999999999987 6 389999999999887664
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0017 Score=63.41 Aligned_cols=109 Identities=10% Similarity=0.024 Sum_probs=74.5
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE-
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV- 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 402 (480)
..||+|+|+.. ....++..|.+.|.+|.+||+.....+...+. +...
T Consensus 7 ~~~I~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g~~~~ 54 (303)
T 3g0o_A 7 DFHVGIVGLGS----------MGMGAARSCLRAGLSTWGADLNPQACANLLAE----------------------GACGA 54 (303)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----------------------TCSEE
T ss_pred CCeEEEECCCH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc----------------------CCccc
Confidence 46899999865 78999999999999999999864432222211 2333
Q ss_pred ecCHHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~ 464 (480)
..++.++++++|+|+++++.+. .+..- .+.+...+++..+|+|+.+..... .+.+.|..|..
T Consensus 55 ~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~ 125 (303)
T 3g0o_A 55 AASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD 125 (303)
T ss_dssp ESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 6788999999999999998753 22210 023345566667999998865421 22345777754
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0073 Score=57.15 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=26.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEE-EEC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDI 34 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~ 34 (480)
|||+|+|+ |.||..++..+... +++++.+ +|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDLTLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTCEEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEcc
Confidence 79999996 99999999988764 4888874 554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.007 Score=58.64 Aligned_cols=73 Identities=18% Similarity=0.340 Sum_probs=56.2
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|+++++. +.++.+.++.||
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 210 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSK---------------------------------TAHLDEEVNKGD 210 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHhC--CCeEEEEECC---------------------------------cccHHHHhccCC
Confidence 4799999995 899999999998 8999999742 235667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.+++.|.-. . ...++++.+||+.+..
T Consensus 211 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDVgi~ 239 (301)
T 1a4i_A 211 ILVVATGQPEMV---------K-----------GEWIKPGAIVIDCGIN 239 (301)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCCB
T ss_pred EEEECCCCcccC---------C-----------HHHcCCCcEEEEccCC
Confidence 999999876321 0 1336789999986543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0036 Score=59.44 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|.|||+|.+|..+|..|+.. |. +++++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence 5799999999999999999998 76 899999987
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0035 Score=59.20 Aligned_cols=100 Identities=16% Similarity=0.014 Sum_probs=66.3
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHH-----------HHhhhccccCCCCCCCC
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQI-----------QRDLTMNKFDWDHPLHL 389 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~-----------~~~~~~~~~~~~~~~~~ 389 (480)
.+..++|+|+|+. +....++..|.+.|.+|.+||........ ...+.
T Consensus 16 ~~~~~kIgiIG~G----------~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------------ 73 (245)
T 3dtt_A 16 YFQGMKIAVLGTG----------TVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWL------------ 73 (245)
T ss_dssp ---CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHG------------
T ss_pred ccCCCeEEEECCC----------HHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHH------------
Confidence 5678899999985 48899999999999999999986432000 01110
Q ss_pred CCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHH-HHhcCCCCEEEEcCCCC
Q 011641 390 QPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRI-YDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~-~~~~~~~~~viD~~~~~ 450 (480)
.... .....++.++++++|+||++++.+...+. ..++ ...++ ..+|||+.|-+
T Consensus 74 -----~~~~-~~~~~~~~e~~~~aDvVilavp~~~~~~~-~~~i~~~~l~-g~ivi~~s~~~ 127 (245)
T 3dtt_A 74 -----PEHP-HVHLAAFADVAAGAELVVNATEGASSIAA-LTAAGAENLA-GKILVDIANPL 127 (245)
T ss_dssp -----GGST-TCEEEEHHHHHHHCSEEEECSCGGGHHHH-HHHHCHHHHT-TSEEEECCCCE
T ss_pred -----hhcC-ceeccCHHHHHhcCCEEEEccCcHHHHHH-HHHhhhhhcC-CCEEEECCCCC
Confidence 0001 12356788999999999999998876542 2344 44443 45999999643
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.013 Score=56.25 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=66.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+... .+.+.+. +.++.. .++
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~~~---------------~~~~~~~-~~~~l~~~~~ 182 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQA--GPSELVIANRDMAKALALRNELD---------------HSRLRIS-RYEALEGQSF 182 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--CCSEEEEECSCHHHHHHHHHHHC---------------CTTEEEE-CSGGGTTCCC
T ss_pred CEEEEECccHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhc---------------cCCeeEe-eHHHhcccCC
Confidence 4799999999999999999998 85 99999999999888764210 0113322 222211 689
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
|+||-|+|.....+ .+.+. ...++++.+|++....|.. |..+
T Consensus 183 DivInaTp~gm~~~------~~~i~---------~~~l~~~~~V~DlvY~P~~-T~ll 224 (272)
T 3pwz_A 183 DIVVNATSASLTAD------LPPLP---------ADVLGEAALAYELAYGKGL-TPFL 224 (272)
T ss_dssp SEEEECSSGGGGTC------CCCCC---------GGGGTTCSEEEESSCSCCS-CHHH
T ss_pred CEEEECCCCCCCCC------CCCCC---------HHHhCcCCEEEEeecCCCC-CHHH
Confidence 99999977543210 11110 1345678888887766544 4443
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0061 Score=59.09 Aligned_cols=72 Identities=24% Similarity=0.365 Sum_probs=54.5
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH--Hhhcc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE--KHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~--~a~~~ 78 (480)
.++.|||.|. +|.++|..|... |..|+++++... +++ +.++.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~~~~T~---------------------------------~l~l~~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKE--NATVTIVHSGTS---------------------------------TEDMIDYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTTSC---------------------------------HHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCCC---------------------------------Cchhhhhhcc
Confidence 4799999876 899999999998 899999987311 223 56889
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||+||.+++.|... . ...++++.+||+.++
T Consensus 211 ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi 240 (300)
T 4a26_A 211 ADIVIAAMGQPGYV---------K-----------GEWIKEGAAVVDVGT 240 (300)
T ss_dssp CSEEEECSCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred CCEEEECCCCCCCC---------c-----------HHhcCCCcEEEEEec
Confidence 99999999876321 1 134688999987544
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0057 Score=60.44 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=65.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHc-------CCCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEe--
Q 011641 1 MVKICCIGAGYVGGPTMAVIALK-------CPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFS-- 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~-------~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t-- 69 (480)
|+||+|||+|.||..++..|.++ +++.+|++ +|+++++.+. ..+.+.+.. ...+ .++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~----------id~~~~~~~~~~~~--~~~~~ 69 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD----------FSLVEALRMKRETG--MLRDD 69 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS----------CCHHHHHHHHHHHS--SCSBC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc----------cCHHHHHhhhccCc--cccCC
Confidence 78999999999999999999764 13566654 5766443211 001111100 0001 123
Q ss_pred cCHHHhhc--cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcc-hHHHHHHHHHhc
Q 011641 70 TDVEKHVS--EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK-TAEAIEKILTHN 144 (480)
Q Consensus 70 ~d~~~a~~--~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~~l~~~ 144 (480)
.|+++.++ +.|+|++|+|+..+. .+ +.+.+...+..|.-|+..++-|.. ..+++.+..++.
T Consensus 70 ~d~~~ll~~~~iDvVv~~tp~~~h~-------------~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~ 133 (327)
T 3do5_A 70 AKAIEVVRSADYDVLIEASVTRVDG-------------GE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERN 133 (327)
T ss_dssp CCHHHHHHHSCCSEEEECCCCC-----------------C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHhcCCCCCEEEECCCCcccc-------------hh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhh
Confidence 37777664 589999998764321 12 344455667778888766553332 223444444443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.007 Score=59.98 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=74.1
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||..... . ..+ +
T Consensus 143 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~~~-----------------------~ 187 (333)
T 1j4a_A 143 EVRDQVVGVVGTG----------HIGQVFMQIMEGFGAKVITYDIFRNPE-L-EKK-----------------------G 187 (333)
T ss_dssp CGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHH-H-HHT-----------------------T
T ss_pred cCCCCEEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCcchh-H-Hhh-----------------------C
Confidence 4678899999984 478899999999999999999987654 2 111 2
Q ss_pred EEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
++.+++++.++++|+|+++++... .+++=-....+.|++.+++||+-+ +.+.+.+
T Consensus 188 ~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL 245 (333)
T 1j4a_A 188 YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAV 245 (333)
T ss_dssp CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHH
Confidence 233478899999999999998743 444322456678888789999876 5665443
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0075 Score=58.08 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=54.5
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|+++++. +.++.+.++.||
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 204 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD 204 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred CEEEEECCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhccCC
Confidence 4799999996 799999999998 8999998642 135566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...++++.+||+.+
T Consensus 205 IVI~Avg~p~lI-------~-------------~~~vk~GavVIDVg 231 (288)
T 1b0a_A 205 LLIVAVGKPGFI-------P-------------GDWIKEGAIVIDVG 231 (288)
T ss_dssp EEEECSCCTTCB-------C-------------TTTSCTTCEEEECC
T ss_pred EEEECCCCcCcC-------C-------------HHHcCCCcEEEEcc
Confidence 999999977321 0 12357899888744
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0049 Score=59.85 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=48.6
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|.|.| .|++|..++..|.++ |++|+++++++...+ +. + ..+. .+.+. ..++.++++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~-~-~~~~------------~~Dl~-~~~~~~~~~~~ 63 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND--GNTPIILTRSIGNKA-IN-D-YEYR------------VSDYT-LEDLINQLNDV 63 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCC-------C-CEEE------------ECCCC-HHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCCCccc-CC-c-eEEE------------Ecccc-HHHHHHhhcCC
Confidence 47899999 699999999999998 999999999855443 32 1 1110 12333 44556677899
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||-|...
T Consensus 64 d~Vih~a~~ 72 (311)
T 3m2p_A 64 DAVVHLAAT 72 (311)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcccc
Confidence 999988653
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0056 Score=61.64 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=73.0
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-...+++.|...|.+|.+|||..... . .
T Consensus 114 g~~l~gktvGIIGlG----------~IG~~vA~~l~a~G~~V~~~d~~~~~~---~-----------------------~ 157 (381)
T 3oet_A 114 GFSLRDRTIGIVGVG----------NVGSRLQTRLEALGIRTLLCDPPRAAR---G-----------------------D 157 (381)
T ss_dssp TCCGGGCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECHHHHHT---T-----------------------C
T ss_pred CCccCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEECCChHHh---c-----------------------c
Confidence 456789999999984 478999999999999999999942111 0 0
Q ss_pred ceEEecCHHhhcccccEEEEEecCcc------cccccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDE------FKTLDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~------~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.. ...++++.++++|+|+++++... ..-++ .+..+.|++.+++||+-+ ++|.+.+
T Consensus 158 ~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~aRG~vvde~aL 220 (381)
T 3oet_A 158 EG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD-ETLIRRLKPGAILINACRGPVVDNAAL 220 (381)
T ss_dssp CS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-HHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred Cc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-HHHHhcCCCCcEEEECCCCcccCHHHH
Confidence 11 23578999999999999997642 22244 456678888889999976 6676544
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0046 Score=60.79 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=73.9
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+||+.....+ .+ ..
T Consensus 135 ~~l~g~tvGIiG~G----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~---~~---------------------~~ 180 (315)
T 3pp8_A 135 YTREEFSVGIMGAG----------VLGAKVAESLQAWGFPLRCWSRSRKSWP---GV---------------------ES 180 (315)
T ss_dssp CCSTTCCEEEECCS----------HHHHHHHHHHHTTTCCEEEEESSCCCCT---TC---------------------EE
T ss_pred CCcCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEEcCCchhhh---hh---------------------hh
Confidence 35789999999984 4789999999999999999998654211 00 00
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..-..++++.++++|+|+++++.. +-+++=-.+..+.|++.+++||+-+ ++|.+.+.
T Consensus 181 ~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~ 240 (315)
T 3pp8_A 181 YVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLL 240 (315)
T ss_dssp EESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred hcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHH
Confidence 111257889999999999998854 4444322456788988889999876 66655443
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0049 Score=58.42 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=54.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+++|+|.||..++.. + ++++. +|+ +++ +.. +..+++|+++.+.++|
T Consensus 13 ~rV~i~G~GaIG~~v~~~---~--~leLv~v~~---~k~-----gel-----------------gv~a~~d~d~lla~pD 62 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL---G--NFEKIYAYD---RIS-----KDI-----------------PGVVRLDEFQVPSDVS 62 (253)
T ss_dssp CEEEEECCSHHHHHHHHH---S--CCSEEEEEC---SSC-----CCC-----------------SSSEECSSCCCCTTCC
T ss_pred ceEEEECcCHHHHHHHhc---C--CcEEEEEEe---ccc-----ccc-----------------CceeeCCHHHHhhCCC
Confidence 899999999999999887 3 67764 555 221 100 2356778887777999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|+.|-+. ..+.+.+.+.|+.|.-|+..|.
T Consensus 63 ~VVe~A~~------------------~av~e~~~~iL~aG~dvv~~S~ 92 (253)
T 1j5p_A 63 TVVECASP------------------EAVKEYSLQILKNPVNYIIIST 92 (253)
T ss_dssp EEEECSCH------------------HHHHHHHHHHTTSSSEEEECCG
T ss_pred EEEECCCH------------------HHHHHHHHHHHHCCCCEEEcCh
Confidence 99999431 2233347778888887776664
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0084 Score=62.75 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=80.4
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|+.. ....|+..|.++|.+|.+||......+....- .++ -.++..+
T Consensus 10 ~~~IgvIGlG~----------MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~~----------~~gi~~~ 62 (497)
T 2p4q_A 10 SADFGLIGLAV----------MGQNLILNAADHGFTVCAYNRTQSKVDHFLAN-------EAK----------GKSIIGA 62 (497)
T ss_dssp CCSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT-------TTT----------TSSEECC
T ss_pred CCCEEEEeeHH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc-------ccc----------CCCeEEe
Confidence 45899999864 88999999999999999999865443221110 000 0246667
Q ss_pred cCHHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEec
Q 011641 404 WDAYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSIG 466 (480)
Q Consensus 404 ~~~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~iG 466 (480)
.++.+++++ +|+|+++++.+ ..++. .+.+...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 63 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~v-l~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 63 TSIEDFISKLKRPRKVMLLVKAGAPVDAL-INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp SSHHHHHHTSCSSCEEEECCCSSHHHHHH-HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHhcCCCCCEEEEEcCChHHHHHH-HHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCC
Confidence 889998877 99999999985 44432 356666776656999999987532 2334577776654
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0063 Score=60.36 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE-EC--CHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI--SVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~--~~~~v~~l~ 43 (480)
+||||+|.|++|..++..|.++ ++.+|..+ |. +.+....+-
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-p~vevvaI~d~~~~~~~~~~ll 47 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-EDVELVAVNDPFITTDYMTYMF 47 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHhh
Confidence 4999999999999999999875 56777665 42 556555543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0066 Score=62.41 Aligned_cols=66 Identities=26% Similarity=0.330 Sum_probs=47.9
Q ss_pred EEEEECCChhHHHHHHHHHHc--------CCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
||+|||+|.||..++..|.++ +++.+|. ++|+++++.+.+.. ...+++|++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------------------~~~~~~d~~ 71 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------------------GLPLTTNPF 71 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------------------TCCEESCTH
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------------------cCcccCCHH
Confidence 799999999999998877531 1355554 67899887665421 124567888
Q ss_pred Hhhc--cCcEEEEeccC
Q 011641 74 KHVS--EADIVFVSVNT 88 (480)
Q Consensus 74 ~a~~--~aDvVii~Vpt 88 (480)
+.++ +.|+|++|+|+
T Consensus 72 ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 72 DVVDDPEIDIVVELIGG 88 (444)
T ss_dssp HHHTCTTCCEEEECCCS
T ss_pred HHhcCCCCCEEEEcCCC
Confidence 8775 57999999874
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0078 Score=58.40 Aligned_cols=104 Identities=15% Similarity=0.115 Sum_probs=66.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|+|+ |.||..++..+.+. |++ .++.+|+.+. +. .+ .++.+..+++++.+ .
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 64 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY--GTK-IVAGVTPGKG-----GM-EV--------------LGVPVYDTVKEAVAHHE 64 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHSC
T ss_pred CEEEEECCCCCHHHHHHHHHHHc--CCe-EEEEECCCCC-----Cc-eE--------------CCEEeeCCHHHHhhcCC
Confidence 68999998 99999999999887 888 4456665421 10 00 24677888888777 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++++|.+ ...++++..... .-..+|+..+.++....+++.+..++.
T Consensus 65 ~Dv~Ii~vp~~---------------~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~a~~~ 114 (288)
T 1oi7_A 65 VDASIIFVPAP---------------AAADAALEAAHA-GIPLIVLITEGIPTLDMVRAVEEIKAL 114 (288)
T ss_dssp CSEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999998742 234445544432 223345544444443344566665554
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=61.82 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=50.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|.+|..++..|++. +|++|++.+|++++.+.+......+.. +.+.-..++.++++++|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~~~~~~~~~v~~~~------------~D~~d~~~l~~~~~~~d 67 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEKVPDDWRGKVSVRQ------------LDYFNQESMVEAFKGMD 67 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGGSCGGGBTTBEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHHHHHhhhCCCEEEE------------cCCCCHHHHHHHHhCCC
Confidence 7899999 599999999999874 379999999998865544332111110 11111123455678999
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||.|.+.
T Consensus 68 ~vi~~a~~ 75 (289)
T 3e48_A 68 TVVFIPSI 75 (289)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99998653
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.007 Score=59.52 Aligned_cols=108 Identities=20% Similarity=0.130 Sum_probs=76.1
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCC----hHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVT----EDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+|+|+|+.+ ....++..|.+.| .+|.+||+... .++....+. ..+
T Consensus 25 m~IgvIG~G~----------mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~-------------------~~g 75 (317)
T 4ezb_A 25 TTIAFIGFGE----------AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAA-------------------ELG 75 (317)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHH-------------------HTT
T ss_pred CeEEEECccH----------HHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHH-------------------HCC
Confidence 5899999865 7899999999999 99999998641 111111111 012
Q ss_pred eEEec-CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEE
Q 011641 400 VSVVW-DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYS 464 (480)
Q Consensus 400 ~~~~~-~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~ 464 (480)
+ .. ++.++++++|+|+++++-+...+ ..+.+...+++..+|||..++... +.+.+.|..|..
T Consensus 76 ~--~~~s~~e~~~~aDvVi~avp~~~~~~-~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d 144 (317)
T 4ezb_A 76 V--EPLDDVAGIACADVVLSLVVGAATKA-VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE 144 (317)
T ss_dssp C--EEESSGGGGGGCSEEEECCCGGGHHH-HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE
T ss_pred C--CCCCHHHHHhcCCEEEEecCCHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 3 55 78899999999999998876554 235677777777799999876542 223355777754
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.011 Score=56.80 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=54.5
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|+++++. +.++++.++.||
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~--gAtVtv~h~~---------------------------------t~~L~~~~~~AD 205 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 205 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhhcCC
Confidence 4799999876 799999999998 8999998752 134566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-. . ...++++.+||+.+
T Consensus 206 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDVg 232 (285)
T 3p2o_A 206 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG 232 (285)
T ss_dssp EEEECSSCTTCB---------C-----------GGGSCTTEEEEECC
T ss_pred EEEECCCCCCcC---------C-----------HHHcCCCeEEEEec
Confidence 999999876311 1 14568899888744
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0084 Score=59.43 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=74.0
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||..... . . ..
T Consensus 141 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~ 185 (333)
T 1dxy_A 141 KELGQQTVGVMGTG----------HIGQVAIKLFKGFGAKVIAYDPYPMKG-D-H-----------------------PD 185 (333)
T ss_dssp CCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSS-C-C-----------------------TT
T ss_pred cCCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCcchh-h-H-----------------------hc
Confidence 45788999999984 478899999999999999999976532 1 0 01
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
..+ .++++.++++|+|+++++... .++ ++ .+..+.|++..++||+-+ +++.+.+.
T Consensus 186 ~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~-~~~l~~mk~ga~lIn~srg~~vd~~aL~ 244 (333)
T 1dxy_A 186 FDY-VSLEDLFKQSDVIDLHVPGIEQNTHIIN-EAAFNLMKPGAIVINTARPNLIDTQAML 244 (333)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCCGGGTTSBC-HHHHHHSCTTEEEEECSCTTSBCHHHHH
T ss_pred ccc-CCHHHHHhcCCEEEEcCCCchhHHHHhC-HHHHhhCCCCcEEEECCCCcccCHHHHH
Confidence 233 378999999999999988754 344 33 456678988889999866 55654443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.01 Score=58.31 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=71.3
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA--RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
...||+|+|+.- ..-.++..|.+.|. +|.+||+.....+...+++ . .-
T Consensus 32 ~~~kI~IIG~G~----------mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G------------------~--~~ 81 (314)
T 3ggo_A 32 SMQNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------------------I--ID 81 (314)
T ss_dssp SCSEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------------------S--CS
T ss_pred CCCEEEEEeeCH----------HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC------------------C--cc
Confidence 347999999754 77889999999999 9999999654333222221 0 01
Q ss_pred EEecCHHh-hcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 401 SVVWDAYE-ATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 401 ~~~~~~~~-a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
....++.+ +++++|.||++++-....++ ++++...+++..+|+|.-++-.
T Consensus 82 ~~~~~~~~~~~~~aDvVilavp~~~~~~v-l~~l~~~l~~~~iv~d~~Svk~ 132 (314)
T 3ggo_A 82 EGTTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKG 132 (314)
T ss_dssp EEESCTTGGGGGCCSEEEECSCGGGHHHH-HHHHHHHSCTTCEEEECCSCCT
T ss_pred hhcCCHHHHhhccCCEEEEeCCHHHHHHH-HHHHhhccCCCcEEEECCCCcH
Confidence 34567888 89999999999987765442 4567777777779999887653
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=59.88 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=74.4
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc------c
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT------M 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 396 (480)
..-||+|+|+.| -.+.++..|.+.|.+|.+||-.-..-+.... ...|+. .|.... .
T Consensus 7 ~~~~~~vIGlG~----------vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~-------g~~~~~-epgl~~~~~~~~~ 68 (446)
T 4a7p_A 7 GSVRIAMIGTGY----------VGLVSGACFSDFGHEVVCVDKDARKIELLHQ-------NVMPIY-EPGLDALVASNVK 68 (446)
T ss_dssp CCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCSTTHHHHTT-------TCCSSC-CTTHHHHHHHHHH
T ss_pred CceEEEEEcCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhc-------CCCCcc-CCCHHHHHHhhcc
Confidence 356999999988 7899999999999999999986654332221 011110 000000 1
Q ss_pred ccceEEecCHHhhcccccEEEEEecCcc---cccccH-------HHHHHhcCCCCEEEEcCCCCC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWDE---FKTLDY-------QRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~~---~~~~~~-------~~~~~~~~~~~~viD~~~~~~ 451 (480)
..++++++++.+++++||+++++++-|. ....|. +.+...+++..+||+...+..
T Consensus 69 ~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~p 133 (446)
T 4a7p_A 69 AGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPV 133 (446)
T ss_dssp TTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCT
T ss_pred cCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Confidence 2357888999999999999999965543 223332 456666777779999876553
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.012 Score=56.48 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=54.3
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|+++++. |.++++.++.||
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 206 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 206 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHhcccCC
Confidence 4799999876 799999999998 8899998642 235567789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-. . ...++++.+||+.+
T Consensus 207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvg 233 (285)
T 3l07_A 207 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG 233 (285)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECC
T ss_pred EEEECCCCCCCC---------C-----------HHHcCCCcEEEEec
Confidence 999999876321 1 13468899888754
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.013 Score=56.27 Aligned_cols=73 Identities=27% Similarity=0.392 Sum_probs=55.2
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|+++.+. |.++++.++.||
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~--gAtVtv~hs~---------------------------------T~~L~~~~~~AD 206 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLG--GCTVTVTHRF---------------------------------TRDLADHVSRAD 206 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHTCS
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------CcCHHHHhccCC
Confidence 4799999765 899999999998 8999998642 134566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.+++.|.-. . ...++++.+||+.+..
T Consensus 207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 207 LVVVAAGKPGLV---------K-----------GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCSC
T ss_pred EEEECCCCCCCC---------C-----------HHHcCCCeEEEEeccc
Confidence 999999876321 1 1456889999875543
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00075 Score=62.53 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=46.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-cC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~a 79 (480)
++|+|||+|.+|..++..+.... |++++ ++|.|+++......+ . .+...+++++.++ +.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~g-v-----------------~V~~~~dl~ell~~~I 141 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRG-G-----------------VIEHVDLLPQRVPGRI 141 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETT-E-----------------EEEEGGGHHHHSTTTC
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcC-C-----------------eeecHHhHHHHHHcCC
Confidence 58999999999999998643333 67655 579988765332211 0 1223567777654 58
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|+|+
T Consensus 142 D~ViIA~Ps 150 (211)
T 2dt5_A 142 EIALLTVPR 150 (211)
T ss_dssp CEEEECSCH
T ss_pred CEEEEeCCc
Confidence 999999884
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0035 Score=54.35 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=72.6
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.++|+|+|++-++ ++.+..+++.|.+.|++|...||....+++ .++...
T Consensus 13 p~~IavIGas~~~------g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-------------------------~G~~~~ 61 (145)
T 2duw_A 13 TRTIALVGASDKP------DRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-------------------------LGQQGY 61 (145)
T ss_dssp CCCEEEESCCSCT------TSHHHHHHHHHHHHTCCEEEECSSSTTSEE-------------------------TTEECC
T ss_pred CCEEEEECcCCCC------CChHHHHHHHHHHCCCEEEEeCCccccccc-------------------------CCeecc
Confidence 5689999998776 468889999999999999999997521111 235556
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh---hhhhcCcEEEE
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN---KLREIGFIVYS 464 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~---~~~~~g~~y~~ 464 (480)
.|+.+..+..|+++|+++-+.-.+ -..++.+. ....++++.. .+..+ .+++.|++|.|
T Consensus 62 ~sl~el~~~~Dlvii~vp~~~v~~-v~~~~~~~-g~~~i~i~~~-~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 62 ATLADVPEKVDMVDVFRNSEAAWG-VAQEAIAI-GAKTLWLQLG-VINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp SSTTTCSSCCSEEECCSCSTHHHH-HHHHHHHH-TCCEEECCTT-CCCHHHHHHHHTTTCEEEC
T ss_pred CCHHHcCCCCCEEEEEeCHHHHHH-HHHHHHHc-CCCEEEEcCC-hHHHHHHHHHHHcCCEEEc
Confidence 677777778999999998433222 12334443 3345777764 44432 34567999865
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0091 Score=58.58 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=70.4
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-+..+++.|...|++|.+|||...... +
T Consensus 141 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~----------------------------~ 182 (311)
T 2cuk_A 141 DLQGLTLGLVGMG----------RIGQAVAKRALAFGMRVVYHARTPKPLP----------------------------Y 182 (311)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSSS----------------------------S
T ss_pred CCCCCEEEEEEEC----------HHHHHHHHHHHHCCCEEEEECCCCcccc----------------------------c
Confidence 5688999999984 4788999999999999999999754321 1
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDAN 453 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~ 453 (480)
. ..++++.++++|+|+++++.. +.++ ++ .+....|++..++||+-+ +.+.+
T Consensus 183 ~-~~~l~ell~~aDvV~l~~p~~~~t~~li~-~~~l~~mk~ga~lin~srg~~vd~~ 237 (311)
T 2cuk_A 183 P-FLSLEELLKEADVVSLHTPLTPETHRLLN-RERLFAMKRGAILLNTARGALVDTE 237 (311)
T ss_dssp C-BCCHHHHHHHCSEEEECCCCCTTTTTCBC-HHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred c-cCCHHHHHhhCCEEEEeCCCChHHHhhcC-HHHHhhCCCCcEEEECCCCCccCHH
Confidence 1 247888999999999998775 3444 33 345678888789999977 44543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0064 Score=57.88 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCE-EEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAR-LSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
...+|+|+|... .+..++..|.+.|.+ |.+||+.....+.... ..++.
T Consensus 9 ~~m~i~iiG~G~----------mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~---------------------~~g~~ 57 (266)
T 3d1l_A 9 EDTPIVLIGAGN----------LATNLAKALYRKGFRIVQVYSRTEESARELAQ---------------------KVEAE 57 (266)
T ss_dssp GGCCEEEECCSH----------HHHHHHHHHHHHTCCEEEEECSSHHHHHHHHH---------------------HTTCE
T ss_pred CCCeEEEEcCCH----------HHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHH---------------------HcCCc
Confidence 346899999754 678899999999998 9999985432211111 01355
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhh
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLR 456 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~ 456 (480)
...+++++++++|+|+++++.+...++ .+.+...+++..+|+|+.+.+..+.+.
T Consensus 58 ~~~~~~~~~~~~Dvvi~av~~~~~~~v-~~~l~~~~~~~~ivv~~s~~~~~~~l~ 111 (266)
T 3d1l_A 58 YTTDLAEVNPYAKLYIVSLKDSAFAEL-LQGIVEGKREEALMVHTAGSIPMNVWE 111 (266)
T ss_dssp EESCGGGSCSCCSEEEECCCHHHHHHH-HHHHHTTCCTTCEEEECCTTSCGGGST
T ss_pred eeCCHHHHhcCCCEEEEecCHHHHHHH-HHHHHhhcCCCcEEEECCCCCchHHHH
Confidence 667888889999999999988765432 245555565566999999988766554
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0049 Score=59.28 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|||+|.+|.+++..|++. |. +|++++|+.++.+.+.+.. + ..+..+.. +.++|
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~--G~~~i~v~nRt~~ka~~la~~~-----------------~-~~~~~~~~--~~~~D 177 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY-----------------G-YAYINSLE--NQQAD 177 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH-----------------T-CEEESCCT--TCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc-----------------C-Cccchhhh--cccCC
Confidence 4799999999999999999998 76 8999999999988876420 0 12222222 46899
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|.+.
T Consensus 178 ivInaTp~gm 187 (271)
T 1npy_A 178 ILVNVTSIGM 187 (271)
T ss_dssp EEEECSSTTC
T ss_pred EEEECCCCCc
Confidence 9999988654
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.022 Score=59.54 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=69.3
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|||+|..|.+ +|..|.++ |++|+++|..+. ..+.|.+...++. .-.+.+ .+.++
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~~~-----------------~g~~~~-~~~~~ 82 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNSVTQHLTALGAQIY-----------------FHHRPE-NVLDA 82 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCEEE-----------------SSCCGG-GGTTC
T ss_pred CEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHCCCEEE-----------------CCCCHH-HcCCC
Confidence 68999999999996 89999998 999999998643 3344543222211 112333 36789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHH----------HHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAA----------RVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~----------~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
|+||++-.-|. |...+..+. +-+...++...+|.+..|..-.||.. +..+|++.+
T Consensus 83 d~vV~Spgi~~-----------~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 148 (494)
T 4hv4_A 83 SVVVVSTAISA-----------DNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG 148 (494)
T ss_dssp SEEEECTTSCT-----------TCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCC-----------CCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence 99988733222 112233322 12334444445777777776666655 567787653
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.004 Score=62.10 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=26.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||||+|+| .|++|..+...|.++ +..+++.+..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~elv~v~s 37 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PYLEVKQVTS 37 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TTEEEEEEBC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEEC
Confidence 36899999 699999999999876 4568776654
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0079 Score=58.17 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=73.4
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. -+..++..|.+.|.+|.+||+.....+.... .++....
T Consensus 6 m~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~~ 53 (299)
T 1vpd_A 6 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------------------AGAETAS 53 (299)
T ss_dssp CEEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------------TTCEECS
T ss_pred ceEEEECchH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------CCCeecC
Confidence 3899999754 6788999999999999999986433221111 1355667
Q ss_pred CHHhhcccccEEEEEecCcc-cccccH--HHHHHhcCCCCEEEEcCCCCCh--hh----hhhcCcEEEE
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLDY--QRIYDNMQKPAFVFDGRNVVDA--NK----LREIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~~--~~~~~~~~~~~~viD~~~~~~~--~~----~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+. .+..-. +.+...+++..+|+|..+.... +. +.+.|+.|..
T Consensus 54 ~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~ 122 (299)
T 1vpd_A 54 TAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD 122 (299)
T ss_dssp SHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 88899999999999998654 332110 2345566666699999887642 22 2334666654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0077 Score=59.95 Aligned_cols=95 Identities=17% Similarity=0.284 Sum_probs=59.1
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhhcc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|.||+||| .|++|.-+...|.++ |..++..+.-.... |+ .+.+...... ..+++. .+.++...+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P~~el~~l~S~~~a------G~------~~~~~~p~~~-~~l~~~~~~~~~~~~~ 78 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYA------GK------KLEEIFPSTL-ENSILSEFDPEKVSKN 78 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTT------TS------BHHHHCGGGC-CCCBCBCCCHHHHHHH
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEeCcccc------cC------ChHHhChhhc-cCceEEeCCHHHhhcC
Confidence 57999998 699999999999987 67788776643211 10 0111100000 112222 244443478
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+|++|+|+|.. +.+.+.+.+ .+..||+.|+-
T Consensus 79 ~Dvvf~alp~~-------------------~s~~~~~~~-~g~~VIDlSsd 109 (351)
T 1vkn_A 79 CDVLFTALPAG-------------------ASYDLVREL-KGVKIIDLGAD 109 (351)
T ss_dssp CSEEEECCSTT-------------------HHHHHHTTC-CSCEEEESSST
T ss_pred CCEEEECCCcH-------------------HHHHHHHHh-CCCEEEECChh
Confidence 99999998742 345566666 78899988763
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0065 Score=60.75 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=26.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
|||+|+| .|++|..++..|.++ +.++|+.+.
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~~ev~~i~ 40 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PMFELTALA 40 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 6999999 899999999999876 567887774
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.017 Score=59.56 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=72.6
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc------ccc
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT------MVK 398 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 398 (480)
.||+|+|+.| -.+.++..|.+.|.+|.+||..-..-+.... + ..|.. .+.... ...
T Consensus 3 mkI~VIG~G~----------vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~-g------~~~i~-e~gl~~~l~~~~~~~ 64 (450)
T 3gg2_A 3 LDIAVVGIGY----------VGLVSATCFAELGANVRCIDTDRNKIEQLNS-G------TIPIY-EPGLEKMIARNVKAG 64 (450)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T------CSCCC-STTHHHHHHHHHHTT
T ss_pred CEEEEECcCH----------HHHHHHHHHHhcCCEEEEEECCHHHHHHHHc-C------CCccc-CCCHHHHHHhhcccC
Confidence 4899999987 7899999999999999999986433222111 1 01110 000000 023
Q ss_pred ceEEecCHHhhcccccEEEEEecCcc--cccc-------cHHHHHHhcCCCCEEEEcCCCCC
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDE--FKTL-------DYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~--~~~~-------~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
++.+++++.++++++|+++++++-+. .... -.+.+...+++..+|++...+..
T Consensus 65 ~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~p 126 (450)
T 3gg2_A 65 RLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPV 126 (450)
T ss_dssp SEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCT
T ss_pred cEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCC
Confidence 57788999999999999999997762 1111 23466667777779999987554
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.022 Score=54.88 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=75.5
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhh-----hccccCCCCCCCCCCCCccccc
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDL-----TMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
-++|+|+|.. +....++..|.+.|++|.+||+.....+..... ...-..+..- ..........
T Consensus 4 ~~kV~VIGaG----------~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~~~~ 71 (283)
T 4e12_A 4 ITNVTVLGTG----------VLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGA--ADGAAQKALG 71 (283)
T ss_dssp CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTC--TTTHHHHHHH
T ss_pred CCEEEEECCC----------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHc
Confidence 4699999974 478999999999999999999865432211110 0000000000 0000000113
Q ss_pred ceEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~ 456 (480)
.+....++.++++++|.||+++.-+ +.+.--++++...+++..+|++..+.++...+.
T Consensus 72 ~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la 130 (283)
T 4e12_A 72 GIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLV 130 (283)
T ss_dssp HCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHH
T ss_pred CeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 4677889999999999999998765 233333567777777777889887777765443
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0071 Score=58.44 Aligned_cols=66 Identities=8% Similarity=0.141 Sum_probs=50.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+.+.+.. ......++.+ + ++|
T Consensus 123 k~vlvlGaGGaaraia~~L~~~--G~~~v~v~nRt~~ka~~La~~~------------------~~~~~~~l~~-l-~~D 180 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDN--FAKDIYVVTRNPEKTSEIYGEF------------------KVISYDELSN-L-KGD 180 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHT--TCSEEEEEESCHHHHHHHCTTS------------------EEEEHHHHTT-C-CCS
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhc------------------CcccHHHHHh-c-cCC
Confidence 4799999999999999999998 87 8999999999998887531 0111122333 4 899
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 181 ivInaTp~G 189 (282)
T 3fbt_A 181 VIINCTPKG 189 (282)
T ss_dssp EEEECSSTT
T ss_pred EEEECCccC
Confidence 999997753
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0058 Score=60.67 Aligned_cols=92 Identities=21% Similarity=0.172 Sum_probs=67.2
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCCh-HHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTE-DQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
++.+|+|+|+. +-+..++..|.+.|.+|.+||+.... .+..... ++.
T Consensus 15 ~~~~I~IIG~G----------~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~----------------------G~~ 62 (338)
T 1np3_A 15 QGKKVAIIGYG----------SQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH----------------------GLK 62 (338)
T ss_dssp HTSCEEEECCS----------HHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT----------------------TCE
T ss_pred cCCEEEEECch----------HHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC----------------------CCE
Confidence 46789999974 47889999999999999999997654 2222221 234
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHH-HHHHhcCCCCEEEEcCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQ-RIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~-~~~~~~~~~~~viD~~~ 448 (480)
.. ++.++++++|+|+++++.....++ ++ ++...+++..+|+|..+
T Consensus 63 ~~-~~~e~~~~aDvVilavp~~~~~~v-~~~~i~~~l~~~~ivi~~~g 108 (338)
T 1np3_A 63 VA-DVKTAVAAADVVMILTPDEFQGRL-YKEEIEPNLKKGATLAFAHG 108 (338)
T ss_dssp EE-CHHHHHHTCSEEEECSCHHHHHHH-HHHHTGGGCCTTCEEEESCC
T ss_pred Ec-cHHHHHhcCCEEEEeCCcHHHHHH-HHHHHHhhCCCCCEEEEcCC
Confidence 44 788899999999999988765432 22 55556766668999865
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.025 Score=58.78 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=72.6
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+.- -...+++.|...|++|.+|||.......... .
T Consensus 272 g~~L~GktVgIIG~G~----------IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~----------------------~ 319 (494)
T 3d64_A 272 DVMIAGKIAVVAGYGD----------VGKGCAQSLRGLGATVWVTEIDPICALQAAM----------------------E 319 (494)
T ss_dssp CCCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECSCHHHHHHHHT----------------------T
T ss_pred ccccCCCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCChHhHHHHHH----------------------c
Confidence 4468999999999743 6788999999999999999997654211111 1
Q ss_pred ceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~ 455 (480)
++.+ .+++++++.+|+|++++.-.. -++- +..+.|++.++|+|.-+- +|.+.+
T Consensus 320 G~~~-~~l~ell~~aDiVi~~~~t~~--lI~~-~~l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 320 GYRV-VTMEYAADKADIFVTATGNYH--VINH-DHMKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp TCEE-CCHHHHTTTCSEEEECSSSSC--SBCH-HHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred CCEe-CCHHHHHhcCCEEEECCCccc--ccCH-HHHhhCCCCcEEEEcCCCcchhchHHH
Confidence 2333 478999999999999983222 2443 456789988899998663 465555
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.042 Score=56.87 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=73.4
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|++ .-...+++.|...|++|.+|||.......... .
T Consensus 252 ~~~l~GktVgIIG~G----------~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~----------------------~ 299 (479)
T 1v8b_A 252 DFLISGKIVVICGYG----------DVGKGCASSMKGLGARVYITEIDPICAIQAVM----------------------E 299 (479)
T ss_dssp CCCCTTSEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT----------------------T
T ss_pred ccccCCCEEEEEeeC----------HHHHHHHHHHHhCcCEEEEEeCChhhHHHHHH----------------------c
Confidence 446899999999964 36788899999999999999998654211111 1
Q ss_pred ceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKLRE 457 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~~~ 457 (480)
++.+ .+++++++++|+|++++.-..+ ++- +..+.|++.++|+|.-+. ++.+.+.+
T Consensus 300 g~~~-~~l~ell~~aDiVi~~~~t~~l--I~~-~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 300 GFNV-VTLDEIVDKGDFFITCTGNVDV--IKL-EHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp TCEE-CCHHHHTTTCSEEEECCSSSSS--BCH-HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred CCEe-cCHHHHHhcCCEEEECCChhhh--cCH-HHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 2332 4789999999999999743332 443 455779988899998763 56555544
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0062 Score=58.94 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=66.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.++|..|++. | +|++++|++++.+.+.+.......... .+ .+.++ +..+.+..+|+
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~--G-~V~v~~r~~~~~~~l~~~~~~~~~~~~--~~------~~d~~-~~~~~~~~~Di 196 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEIAEKLNKKF--GE------EVKFS-GLDVDLDGVDI 196 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHHHHHHTCCH--HH------HEEEE-CTTCCCTTCCE
T ss_pred CEEEEECchHHHHHHHHHHHHC--C-CEEEEECCHHHHHHHHHHHhhhccccc--ce------eEEEe-eHHHhhCCCCE
Confidence 4799999999999999999998 9 999999999888776531000000000 00 12232 22345678999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+|-|+|.+...+ .+...+. -...++++.+|++.++.|..|
T Consensus 197 lVn~ag~~~~~~-------~~~~~~~-----~~~~l~~~~~v~Dv~y~p~~t 236 (287)
T 1nvt_A 197 IINATPIGMYPN-------IDVEPIV-----KAEKLREDMVVMDLIYNPLET 236 (287)
T ss_dssp EEECSCTTCTTC-------CSSCCSS-----CSTTCCSSSEEEECCCSSSSC
T ss_pred EEECCCCCCCCC-------CCCCCCC-----CHHHcCCCCEEEEeeeCCccC
Confidence 999987543210 0000000 013466788899888765443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0053 Score=61.85 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|++ .-...+++.|...|++|.+|||..... ..
T Consensus 111 ~~~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~---------------------- 154 (380)
T 2o4c_A 111 GADLAERTYGVVGAG----------QVGGRLVEVLRGLGWKVLVCDPPRQAR----EP---------------------- 154 (380)
T ss_dssp TCCGGGCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECHHHHHH----ST----------------------
T ss_pred hcccCCCEEEEEeCC----------HHHHHHHHHHHHCCCEEEEEcCChhhh----cc----------------------
Confidence 446789999999974 477899999999999999999853211 11
Q ss_pred ceEEecCHHhhcccccEEEEEecCcc-----ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDE-----FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~-----~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
+.. ..++++.++++|+|+++++... -++ ++ ..+.+.|++..++||+-+ +.+.+.+
T Consensus 155 g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~sRG~vvd~~aL 217 (380)
T 2o4c_A 155 DGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD-EPRLAALRPGTWLVNASRGAVVDNQAL 217 (380)
T ss_dssp TSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-HHHHHTSCTTEEEEECSCGGGBCHHHH
T ss_pred Ccc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC-HHHHhhCCCCcEEEECCCCcccCHHHH
Confidence 111 2478899999999999987643 222 44 456788888789999876 5565433
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.012 Score=58.28 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=72.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||..... . . ..+
T Consensus 143 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~~ 187 (331)
T 1xdw_A 143 EVRNCTVGVVGLG----------RIGRVAAQIFHGMGATVIGEDVFEIKG-I-E-----------------------DYC 187 (331)
T ss_dssp CGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCS-C-T-----------------------TTC
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCccHH-H-H-----------------------hcc
Confidence 4678899999984 478899999999999999999976432 1 1 012
Q ss_pred EEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+ .++++.++++|+|+++++.. +-++ ++ .+..+.|++.+++||+-+ +++.+.+
T Consensus 188 ~~-~~l~ell~~aDvV~~~~p~t~~t~~li~-~~~l~~mk~ga~lin~srg~~vd~~aL 244 (331)
T 1xdw_A 188 TQ-VSLDEVLEKSDIITIHAPYIKENGAVVT-RDFLKKMKDGAILVNCARGQLVDTEAV 244 (331)
T ss_dssp EE-CCHHHHHHHCSEEEECCCCCTTTCCSBC-HHHHHTSCTTEEEEECSCGGGBCHHHH
T ss_pred cc-CCHHHHHhhCCEEEEecCCchHHHHHhC-HHHHhhCCCCcEEEECCCcccccHHHH
Confidence 33 37889999999999988764 3334 34 456678988889999976 5665433
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0034 Score=62.96 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|||+|..|+.+|..|+++ |++|+++|+++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 8999999999999999999998 99999999864
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.061 Score=54.73 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=78.2
Q ss_pred HHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011641 314 VVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS 393 (480)
Q Consensus 314 ~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
+.+..+..+.+++|+|+|..- -...+++.|...|++|.++|+.-........
T Consensus 210 i~rat~~~L~GktV~ViG~G~----------IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~------------------ 261 (435)
T 3gvp_A 210 LKRTTDMMFGGKQVVVCGYGE----------VGKGCCAALKAMGSIVYVTEIDPICALQACM------------------ 261 (435)
T ss_dssp HHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH------------------
T ss_pred HHHhhCceecCCEEEEEeeCH----------HHHHHHHHHHHCCCEEEEEeCChhhhHHHHH------------------
Confidence 344445567999999999743 7899999999999999999964321111111
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC---CChhhhhhcCcEEEEecC
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV---VDANKLREIGFIVYSIGK 467 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~---~~~~~~~~~g~~y~~iG~ 467 (480)
.+..+ .+++++++++|+++.++..+.. ++.+ ..+.|++.++|++.-+- ++.+.+...++.+..+..
T Consensus 262 ----~G~~v-~~Leeal~~ADIVi~atgt~~l--I~~e-~l~~MK~gailINvgrg~~EId~~~L~~~~~~~~~ir~ 330 (435)
T 3gvp_A 262 ----DGFRL-VKLNEVIRQVDIVITCTGNKNV--VTRE-HLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRS 330 (435)
T ss_dssp ----TTCEE-CCHHHHTTTCSEEEECSSCSCS--BCHH-HHHHSCTTEEEEECSSTTTTBTGGGGCSTTCEEEEEET
T ss_pred ----cCCEe-ccHHHHHhcCCEEEECCCCccc--CCHH-HHHhcCCCcEEEEecCCCccCCHHHHHhhcceeEEEEc
Confidence 12222 4789999999999997654432 4444 45678887799998653 344444444566665543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=60.33 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHH-hhhccccCCCCCCCCCCCCcccccceEE
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQR-DLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
..+|+|+|+. +....++..|.+.|.+|.+||+.....+... .++ ..++..
T Consensus 5 ~~~IgvIG~G----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------------------~~gi~~ 55 (474)
T 2iz1_A 5 QANFGVVGMA----------VMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ-------------------DKNLVF 55 (474)
T ss_dssp TBSEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT-------------------TSCEEE
T ss_pred CCcEEEEeeH----------HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc-------------------CCCeEE
Confidence 4589999985 4788999999999999999998643322111 100 024667
Q ss_pred ecCHHhhccc---ccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCCCh--h----hhhhcCcEEEEec
Q 011641 403 VWDAYEATKD---AHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVVDA--N----KLREIGFIVYSIG 466 (480)
Q Consensus 403 ~~~~~~a~~~---ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~~~--~----~~~~~g~~y~~iG 466 (480)
+.++.+++++ +|+|+++++.+. .++ -.+.+...+++..+|||+.+.... . .+.+.|+.|.+.+
T Consensus 56 ~~s~~e~v~~l~~aDvVilavp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~p 128 (474)
T 2iz1_A 56 TKTLEEFVGSLEKPRRIMLMVQAGAATDA-TIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTG 128 (474)
T ss_dssp CSSHHHHHHTBCSSCEEEECCCTTHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEE
T ss_pred eCCHHHHHhhccCCCEEEEEccCchHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCC
Confidence 7889888776 999999999853 443 234566667665699999988743 1 2223477776544
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.02 Score=56.19 Aligned_cols=100 Identities=11% Similarity=0.150 Sum_probs=71.6
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CEEEEEcCCCC--hHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK----ARLSIYDPQVT--EDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..+|+|+|+. ..+..++..|.+.| .+|.+||+... ..+...+
T Consensus 22 ~mkI~iIG~G----------~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~---------------------- 69 (322)
T 2izz_A 22 SMSVGFIGAG----------QLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK---------------------- 69 (322)
T ss_dssp CCCEEEESCS----------HHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH----------------------
T ss_pred CCEEEEECCC----------HHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH----------------------
Confidence 3489999974 48899999999999 79999998754 2111112
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhh
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLR 456 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~ 456 (480)
.++....+..++++++|+||++++.....+. .+.+...+++..+|+|..+-++...+.
T Consensus 70 ~G~~~~~~~~e~~~~aDvVilav~~~~~~~v-l~~l~~~l~~~~ivvs~s~gi~~~~l~ 127 (322)
T 2izz_A 70 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFI-LDEIGADIEDRHIVVSCAAGVTISSIE 127 (322)
T ss_dssp HTCEEESCHHHHHHHCSEEEECSCGGGHHHH-HHHHGGGCCTTCEEEECCTTCCHHHHH
T ss_pred cCCEEeCChHHHhccCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEeCCCCCHHHHH
Confidence 2356677888999999999999985544432 234555555556999998877765443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.018 Score=56.04 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=66.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
++|+|+|+ |.+|..++..+.+. |++ .++++|+.+. +. .+ .++.+..+++++.+ .
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~--g~~-~V~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 70 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC--GTK-IVGGVTPGKG-----GQ-NV--------------HGVPVFDTVKEAVKETD 70 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT--TCC-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC--CCe-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCC
Confidence 36888898 99999999999987 888 6667776421 10 00 14677888888777 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
+|++++++|.+ ...++++...+. ....+|+..+.++....+++.+..++.+
T Consensus 71 ~Dv~ii~vp~~---------------~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~g 121 (294)
T 2yv1_A 71 ANASVIFVPAP---------------FAKDAVFEAIDA-GIELIVVITEHIPVHDTMEFVNYAEDVG 121 (294)
T ss_dssp CCEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEccCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999998742 234444544442 2233454444444433445666665543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.018 Score=55.15 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=67.9
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA--RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
++|+|+|+.. -+..++..|.+.|. +|.+||+.....+....++ . ....
T Consensus 2 ~~I~iIG~G~----------mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g------------------~--~~~~ 51 (281)
T 2g5c_A 2 QNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------------------I--IDEG 51 (281)
T ss_dssp CEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------------------S--CSEE
T ss_pred cEEEEEecCH----------HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCC------------------C--cccc
Confidence 4799999754 77899999999998 9999999654332222211 0 0023
Q ss_pred ecCHHhhcc-cccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 403 VWDAYEATK-DAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 403 ~~~~~~a~~-~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
..++.++++ ++|+|+++++.+...++ ..++...+++..+|+|..+.-.
T Consensus 52 ~~~~~~~~~~~aDvVilavp~~~~~~v-~~~l~~~l~~~~iv~~~~~~~~ 100 (281)
T 2g5c_A 52 TTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKG 100 (281)
T ss_dssp ESCGGGGGGTCCSEEEECSCHHHHHHH-HHHHHHHSCTTCEEEECCSCCT
T ss_pred cCCHHHHhcCCCCEEEEcCCHHHHHHH-HHHHHhhCCCCcEEEECCCCcH
Confidence 457788899 99999999988765542 3456666776679999887654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.014 Score=56.37 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=73.4
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..||+|+|+.. -+..++..|.+.|.+|.+||+.....+ .+. ..++...
T Consensus 4 ~~~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~~~~~~~~---~~~-------------------~~g~~~~ 51 (301)
T 3cky_A 4 SIKIGFIGLGA----------MGKPMAINLLKEGVTVYAFDLMEANVA---AVV-------------------AQGAQAC 51 (301)
T ss_dssp CCEEEEECCCT----------THHHHHHHHHHTTCEEEEECSSHHHHH---HHH-------------------TTTCEEC
T ss_pred CCEEEEECccH----------HHHHHHHHHHHCCCeEEEEeCCHHHHH---HHH-------------------HCCCeec
Confidence 35899999754 778899999999999999998543221 111 0135566
Q ss_pred cCHHhhcccccEEEEEecCcc-cccccH--HHHHHhcCCCCEEEEcCCCCC--hhhh----hhcCcEEEE
Q 011641 404 WDAYEATKDAHGVCILTEWDE-FKTLDY--QRIYDNMQKPAFVFDGRNVVD--ANKL----REIGFIVYS 464 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~-~~~~~~--~~~~~~~~~~~~viD~~~~~~--~~~~----~~~g~~y~~ 464 (480)
.++.++++++|+|+++++.+. .+..-. +.+...+++..+|+|..+... ...+ .+.|+.|..
T Consensus 52 ~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~ 121 (301)
T 3cky_A 52 ENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD 121 (301)
T ss_dssp SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 788999999999999996654 332211 145556666669999988872 2222 234677754
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.015 Score=56.09 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=30.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.|+ |++|..++..|.++ ||+|+++.|++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~--G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR--GHEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 89999996 99999999999998 99999999864
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0045 Score=62.04 Aligned_cols=32 Identities=25% Similarity=0.620 Sum_probs=26.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+||+|+| .|++|..+...|.++ +..+++.+..
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~~ 49 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-PHFQVTLMTA 49 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-SSEEEEEEBC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 5899999 899999999999986 4568777654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0025 Score=61.12 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=32.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
||||.|.|+|++|..++..|.++ |++|++++++++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ--GHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 47899999999999999999998 9999999998654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0037 Score=59.75 Aligned_cols=74 Identities=14% Similarity=0.251 Sum_probs=49.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|.|.|. |.+|..++..|++..+|++|+++++++++.+.+......+.. +.+.-..++.++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRH------------GDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEE------------eccCCHHHHHHHHhcCC
Confidence 68999996 999999999998753479999999988766555432111110 11110123445677899
Q ss_pred EEEEecc
Q 011641 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 69 ~vi~~a~ 75 (287)
T 2jl1_A 69 KLLFISG 75 (287)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998865
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0074 Score=59.04 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|.|.|. |.+|..++..|+++ |++|++++++++..+.+.
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCcccHHHHH
Confidence 68999996 99999999999998 999999999988765543
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.057 Score=55.13 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCC
Q 011641 310 FVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHL 389 (480)
Q Consensus 310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
++.-+.+..+..+.+++|+|+|.. .-...+++.|...|++|.+||+.-........
T Consensus 233 lvdgI~Ratg~~L~GKTVgVIG~G----------~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~-------------- 288 (464)
T 3n58_A 233 LVDGIRRGTDVMMAGKVAVVCGYG----------DVGKGSAQSLAGAGARVKVTEVDPICALQAAM-------------- 288 (464)
T ss_dssp HHHHHHHHHCCCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------
T ss_pred HHHHHHHhcCCcccCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEEeCCcchhhHHHh--------------
Confidence 334444555567899999999974 36789999999999999999763221111111
Q ss_pred CCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 390 QPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
.++.+ .+++++++.+|+|+..|..... ++- +..+.|++.++|+++-+
T Consensus 289 --------~G~~v-v~LeElL~~ADIVv~atgt~~l--I~~-e~l~~MK~GAILINvGR 335 (464)
T 3n58_A 289 --------DGFEV-VTLDDAASTADIVVTTTGNKDV--ITI-DHMRKMKDMCIVGNIGH 335 (464)
T ss_dssp --------TTCEE-CCHHHHGGGCSEEEECCSSSSS--BCH-HHHHHSCTTEEEEECSS
T ss_pred --------cCcee-ccHHHHHhhCCEEEECCCCccc--cCH-HHHhcCCCCeEEEEcCC
Confidence 12333 3789999999999998765432 344 44578888888998765
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0059 Score=58.97 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=48.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECC------HHHHHHH---HcCCCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS------VSRINAW---NSDQLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~------~~~v~~l---~~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|.|.|. |.+|..++..|++. |++|++++|+ +++.+.+ ......+.. +.+.-..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSNSEKAQLLESFKASGANIVH------------GSIDDHA 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC------------CCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEE------------eccCCHH
Confidence 478999996 99999999999998 8999999997 4444332 222111111 1111112
Q ss_pred CHHHhhccCcEEEEecc
Q 011641 71 DVEKHVSEADIVFVSVN 87 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vp 87 (480)
++.++++++|+||.|.+
T Consensus 70 ~l~~~~~~~d~vi~~a~ 86 (308)
T 1qyc_A 70 SLVEAVKNVDVVISTVG 86 (308)
T ss_dssp HHHHHHHTCSEEEECCC
T ss_pred HHHHHHcCCCEEEECCc
Confidence 34556788999999865
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.025 Score=57.94 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=70.4
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc------
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM------ 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 396 (480)
+-.||+|+|+.| -.+.++..|.+ |.+|.+||..-..-+.... ...|+. + ++.
T Consensus 35 ~~mkIaVIGlG~----------mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~-------g~~~i~--e--~~l~~ll~~ 92 (432)
T 3pid_A 35 EFMKITISGTGY----------VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQ-------KISPIV--D--KEIQEYLAE 92 (432)
T ss_dssp CCCEEEEECCSH----------HHHHHHHHHHT-TSEEEEECSCHHHHHHHHT-------TCCSSC--C--HHHHHHHHH
T ss_pred CCCEEEEECcCH----------HHHHHHHHHHc-CCeEEEEecCHHHhhHHhc-------cCCccc--c--ccHHHHHhh
Confidence 456999999987 77899999887 9999999985443222111 000100 0 000
Q ss_pred -ccceEEecCHHhhcccccEEEEEecCccc---cccc-------HHHHHHhcCCCCEEEEcCCCCC
Q 011641 397 -VKQVSVVWDAYEATKDAHGVCILTEWDEF---KTLD-------YQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 397 -~~~~~~~~~~~~a~~~ad~vvi~t~~~~~---~~~~-------~~~~~~~~~~~~~viD~~~~~~ 451 (480)
..++++++++.+++++||+|+++++-+.= ..+| .+.+.. +++..+|||...+..
T Consensus 93 ~~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~p 157 (432)
T 3pid_A 93 KPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPV 157 (432)
T ss_dssp SCCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCT
T ss_pred ccCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCCh
Confidence 12578889999999999999999887621 0122 245666 677779999876664
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.025 Score=58.89 Aligned_cols=114 Identities=12% Similarity=0.164 Sum_probs=77.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|++. ....++..|.++|.+|.+||......+....- .. ++ .++..+.
T Consensus 3 m~IgvIG~G~----------mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~--------~g--~gi~~~~ 55 (482)
T 2pgd_A 3 ADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-------EA--------KG--TKVLGAH 55 (482)
T ss_dssp BSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-------TT--------TT--SSCEECS
T ss_pred CeEEEEChHH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc-------cc--------cC--CCeEEeC
Confidence 4799999854 78899999999999999999865432211110 00 00 2456677
Q ss_pred CHHhhcc---cccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEec
Q 011641 405 DAYEATK---DAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~---~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~iG 466 (480)
+++++++ ++|+|+++++.+ ..++ -.+.+...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 56 ~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~p 126 (482)
T 2pgd_A 56 SLEEMVSKLKKPRRIILLVKAGQAVDN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSG 126 (482)
T ss_dssp SHHHHHHHBCSSCEEEECSCTTHHHHH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHhhccCCCEEEEeCCChHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence 8888764 899999999986 4444 2356777777656999998877532 2234577776554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0086 Score=55.74 Aligned_cols=74 Identities=7% Similarity=0.073 Sum_probs=50.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|+|.|.| .|.+|..++..|+++++|++|+++++++++.+.+..+ ..+..-+ +.-..+++++++++
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~D------------~~d~~~~~~~~~~~ 70 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGD------------ITDADSINPAFQGI 70 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCC-TTEEECC------------TTSHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCC-eeEEEec------------CCCHHHHHHHHcCC
Confidence 47899998 6999999999999873369999999999887665221 1111101 11012344567789
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||-+..
T Consensus 71 d~vi~~a~ 78 (253)
T 1xq6_A 71 DALVILTS 78 (253)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 99998875
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0072 Score=58.50 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=50.2
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECC-----HHHHHHHH---cCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
||+|.|.| .|.+|..++..|.+. |++|++++|+ +++.+.+. .....+.. +.+.-..+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~------------~D~~d~~~ 69 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIE------------ASLDDHQR 69 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEEC------------CCSSCHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEe------------CCCCCHHH
Confidence 47899999 599999999999998 9999999998 55554432 21111111 11111123
Q ss_pred HHHhhccCcEEEEeccC
Q 011641 72 VEKHVSEADIVFVSVNT 88 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vpt 88 (480)
+.++++++|+||.+.+.
T Consensus 70 l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 70 LVDALKQVDVVISALAG 86 (313)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHHhCCCEEEECCcc
Confidence 45667899999998764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0072 Score=60.32 Aligned_cols=32 Identities=22% Similarity=0.599 Sum_probs=26.2
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCC-----CCeEEEEE
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCP-----SIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~-----G~~V~~~D 33 (480)
||||+|+| .|++|..+...|.++ + .++++.+.
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~-~~~~~~~~ei~~l~ 46 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH-PAYADGRLRIGALT 46 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-HHHHTTSEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCCCCccEEEEEEE
Confidence 47999999 999999999999986 2 24777664
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0095 Score=60.06 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=52.7
Q ss_pred cEEEEECCChhHHHH-HHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE-ecC---HHHh
Q 011641 2 VKICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF-STD---VEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~-t~d---~~~a 75 (480)
||+..+|.|++|..+ +..|.+. |++|+..|+|+..+++|++.+ .++..-|.++....+ .++++ .++ .-+.
T Consensus 1 mkavhfGaGniGRGfig~~l~~~--g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v--~~v~ai~s~~~~~~~~ 76 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADA--GIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTV--SGVNAVSSIGDDVVDL 76 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHT--TCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEE--ESCEEEETTSSHHHHH
T ss_pred CcEEEECCCccchhhHHHHHHHc--CCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEE--EEEEEEeCcHHHHHHH
Confidence 899999999999555 4556666 999999999999999999632 222222221111001 12332 122 3335
Q ss_pred hccCcEEEEecc
Q 011641 76 VSEADIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+.++|+|..+++
T Consensus 77 i~~adlitT~vG 88 (382)
T 3h2z_A 77 IAQVDLVTTAVG 88 (382)
T ss_dssp HTTCSEEEECCC
T ss_pred HcCCCEEEECCC
Confidence 679999888876
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.003 Score=62.03 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|+|.|.| .|.+|..++..|+++ |++|++++++++..+.+......+.. +.+.-..++.++++++
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~l~~~~~~~~~------------~Dl~d~~~~~~~~~~~ 78 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAA--GHDLVLIHRPSSQIQRLAYLEPECRV------------AEMLDHAGLERALRGL 78 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECTTSCGGGGGGGCCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEecChHhhhhhccCCeEEEE------------ecCCCHHHHHHHHcCC
Confidence 47999999 599999999999998 99999999987654433321111100 1111011234566789
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||-|..
T Consensus 79 d~vih~a~ 86 (342)
T 2x4g_A 79 DGVIFSAG 86 (342)
T ss_dssp SEEEEC--
T ss_pred CEEEECCc
Confidence 99998865
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0053 Score=59.32 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=50.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCH-------HHHHHHH---cCCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV-------SRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~-------~~v~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
||+|.|.|+ |.+|..++..|++. |++|++++|++ ++.+.+. .....+.. +.+.-.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA--GNPTYALVRKTITAANPETKEELIDNYQSLGVILLE------------GDINDH 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH--TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEE------------CCTTCH
T ss_pred CcEEEEECCCchHHHHHHHHHHhC--CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEE------------eCCCCH
Confidence 688999996 99999999999998 89999999986 5554332 11111100 011101
Q ss_pred cCHHHhhccCcEEEEeccC
Q 011641 70 TDVEKHVSEADIVFVSVNT 88 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vpt 88 (480)
.++.++++++|+||.|.+.
T Consensus 68 ~~l~~~~~~~d~vi~~a~~ 86 (307)
T 2gas_A 68 ETLVKAIKQVDIVICAAGR 86 (307)
T ss_dssp HHHHHHHTTCSEEEECSSS
T ss_pred HHHHHHHhCCCEEEECCcc
Confidence 2345567889999998763
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0029 Score=62.67 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=44.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCC--------CCeE-EEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCP--------SIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~--------G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
+||+|||+|.||..++..+.++ + +.+| .++|++.++.+ + ++ ...+++|+
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~-~~~l~~~g~~~~lvaV~d~~~~~~~----~--------~~---------~~~~~~d~ 61 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLER-AEELSAFGVVPRFLGVLVRDPRKPR----A--------IP---------QELLRAEP 61 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-GGGGGGGTEEEEEEEEECSCTTSCC----S--------SC---------GGGEESSC
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-hhhHhhcCCCEEEEEEEECCHHHhh----c--------cC---------cccccCCH
Confidence 6899999999999999999875 2 2454 45677744211 1 10 01246777
Q ss_pred HHhhccCcEEEEeccC
Q 011641 73 EKHVSEADIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~~aDvVii~Vpt 88 (480)
++.+ +.|+|++|+|+
T Consensus 62 ~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 62 FDLL-EADLVVEAMGG 76 (332)
T ss_dssp CCCT-TCSEEEECCCC
T ss_pred HHHh-CCCEEEECCCC
Confidence 7767 99999999774
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.03 Score=54.92 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=51.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC---HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe--cC---H
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS---VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD---V 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~---~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d---~ 72 (480)
.++.|+|+|.+|.+++..|++. |. +|++++|+ .++.+.+.+. +-.. ....+.+. ++ +
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~--Ga~~V~i~nR~~~~~~~a~~la~~-----------~~~~-~~~~~~~~~~~~~~~l 220 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALD--GVKEISIFNRKDDFYANAEKTVEK-----------INSK-TDCKAQLFDIEDHEQL 220 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTTHHHHHHHHHH-----------HHHH-SSCEEEEEETTCHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHC--CCCEEEEEECCCchHHHHHHHHHH-----------hhhh-cCCceEEeccchHHHH
Confidence 4789999999999999999998 87 89999999 8888776531 0000 00112221 22 3
Q ss_pred HHhhccCcEEEEeccCC
Q 011641 73 EKHVSEADIVFVSVNTP 89 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp 89 (480)
.+.+.++|+||-|+|..
T Consensus 221 ~~~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 221 RKEIAESVIFTNATGVG 237 (315)
T ss_dssp HHHHHTCSEEEECSSTT
T ss_pred HhhhcCCCEEEECccCC
Confidence 45577999999997753
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0024 Score=63.25 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=49.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHh-hcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
++|.|+|+|.+|..+|..|.+. |+ |+++|+|+++++ +++...++. ++.-++ .++++ +++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~--g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~--------------~L~~a~i~~ 177 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKK-VLRSGANFVHGDPTRVS--------------DLEKANVRG 177 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS--CE-EEEESCGGGHHH-HHHTTCEEEESCTTSHH--------------HHHHTCSTT
T ss_pred CCEEEECCcHHHHHHHHHHHhC--Cc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHH--------------HHHhcChhh
Confidence 4799999999999999999988 89 999999999998 765322221 111111 12223 678
Q ss_pred CcEEEEecc
Q 011641 79 ADIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
||.++++++
T Consensus 178 a~~vi~~~~ 186 (336)
T 1lnq_A 178 ARAVIVDLE 186 (336)
T ss_dssp EEEEEECCS
T ss_pred ccEEEEcCC
Confidence 999999965
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.018 Score=55.59 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=62.1
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. .+..++..|.+.|.+|.+||+.....+.... .++....+
T Consensus 2 ~i~iiG~G~----------mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~~~ 49 (296)
T 2gf2_A 2 PVGFIGLGN----------MGNPMAKNLMKHGYPLIIYDVFPDACKEFQD----------------------AGEQVVSS 49 (296)
T ss_dssp CEEEECCST----------THHHHHHHHHHTTCCEEEECSSTHHHHHHHT----------------------TTCEECSS
T ss_pred eEEEEeccH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------------------cCCeecCC
Confidence 699999754 7789999999999999999986443221111 23566678
Q ss_pred HHhhcccccEEEEEecCcc-cccccHHH---HHHhcCCCCEEEEcCCCC
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTLDYQR---IYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~~~~~---~~~~~~~~~~viD~~~~~ 450 (480)
+.++++++|+|++++..+. .+.. ... +...+++..+|+|..++-
T Consensus 50 ~~~~~~~~Dvvi~~vp~~~~~~~v-~~~~~~~~~~l~~~~~vv~~s~~~ 97 (296)
T 2gf2_A 50 PADVAEKADRIITMLPTSINAIEA-YSGANGILKKVKKGSLLIDSSTID 97 (296)
T ss_dssp HHHHHHHCSEEEECCSSHHHHHHH-HHSTTSGGGTCCTTCEEEECSCCC
T ss_pred HHHHHhcCCEEEEeCCCHHHHHHH-HhCchhHHhcCCCCCEEEECCCCC
Confidence 8999999999999986543 2221 111 222345556899955443
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=59.18 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=26.8
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEE
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
|+||+|+| .|++|.-+...|.++ +..+++.+.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~ 36 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKH-PYLELVKVS 36 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhC-CCcEEEEEe
Confidence 36899999 899999999998876 567887774
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.006 Score=59.44 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=48.9
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCH------HHHHHHH---cCCCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV------SRINAWN---SDQLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~------~~v~~l~---~~~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|.|.|. |.+|..++..|++. |++|++++|++ ++.+.+. .....+.. +.+.-..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~------------~D~~d~~ 69 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF--SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIE------------GEMEEHE 69 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT--TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEE------------CCTTCHH
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC--CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEE------------ecCCCHH
Confidence 678999995 99999999999998 99999999985 3433332 11111110 1111012
Q ss_pred CHHHhhccCcEEEEecc
Q 011641 71 DVEKHVSEADIVFVSVN 87 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vp 87 (480)
++.++++++|+||.|.+
T Consensus 70 ~l~~a~~~~d~vi~~a~ 86 (321)
T 3c1o_A 70 KMVSVLKQVDIVISALP 86 (321)
T ss_dssp HHHHHHTTCSEEEECCC
T ss_pred HHHHHHcCCCEEEECCC
Confidence 34556789999999865
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.036 Score=56.89 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=68.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc------ccc
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM------VKQ 399 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 399 (480)
||+|+|+.| -...++..|.+.|.+|.++|......+.... ..-|+.. +..... ...
T Consensus 2 kI~VIG~G~----------vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~-------~~~~i~e-~~l~~~~~~~~~~g~ 63 (436)
T 1mv8_A 2 RISIFGLGY----------VGAVCAGCLSARGHEVIGVDVSSTKIDLINQ-------GKSPIVE-PGLEALLQQGRQTGR 63 (436)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHT-------TCCSSCC-TTHHHHHHHHHHTTC
T ss_pred EEEEECCCH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHhC-------CCCCcCC-CCHHHHHHhhcccCc
Confidence 799999987 7799999999999999999975433221111 0011100 000000 123
Q ss_pred eEEecCHHhhcccccEEEEEecCcc--ccccc-------HHHHHHhcCC---CCEEEEcCCCCC
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE--FKTLD-------YQRIYDNMQK---PAFVFDGRNVVD 451 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~--~~~~~-------~~~~~~~~~~---~~~viD~~~~~~ 451 (480)
+...+++.++++++|+|+++++-+. ....| .+.+...+++ ..+|++...+..
T Consensus 64 l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~ 127 (436)
T 1mv8_A 64 LSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLP 127 (436)
T ss_dssp EEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCT
T ss_pred eEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCC
Confidence 7778899999999999999997654 12222 2455556665 568999866553
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.031 Score=54.35 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=65.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
++|.|+|+ |.+|..++..+.+. |++ .++.+|+.+. +. .+ .++.+..+++++.+ .
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 70 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY--GTK-VVAGVTPGKG-----GS-EV--------------HGVPVYDSVKEALAEHP 70 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHCT
T ss_pred CEEEEECCCCCHHHHHHHHHHhC--CCc-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCC
Confidence 46888898 99999999999987 888 5666665421 10 00 14677888888665 4
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++++|.+. ..++++...+. .-..+|+..+.++....+++.+..++.
T Consensus 71 ~~DvaIi~vp~~~---------------~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~ 121 (297)
T 2yv2_A 71 EINTSIVFVPAPF---------------APDAVYEAVDA-GIRLVVVITEGIPVHDTMRFVNYARQK 121 (297)
T ss_dssp TCCEEEECCCGGG---------------HHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCHHH---------------HHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 999999988432 24444544442 223355544445443344566666554
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.029 Score=53.77 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=0.0
Q ss_pred cEEEEECCChh-HHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|.+ |.++|..|...+.|..|+++++. +.++.+.++.||
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~---------------------------------t~~L~~~~~~AD 205 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG---------------------------------TRDLPALTRQAD 205 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc---------------------------------hhHHHHHHhhCC
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|.--.. ..++++.+||+.+.
T Consensus 206 IVI~Avg~p~~I~~--------------------~~vk~GavVIDVgi 233 (281)
T 2c2x_A 206 IVVAAVGVAHLLTA--------------------DMVRPGAAVIDVGV 233 (281)
T ss_dssp EEEECSCCTTCBCG--------------------GGSCTTCEEEECCE
T ss_pred EEEECCCCCcccCH--------------------HHcCCCcEEEEccC
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.091 Score=55.22 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=68.0
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|-|||.|-.|.+ +|..|.++ |++|+++|.+. ...+.|.+...+ +..-.+.+....+
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~--G~~V~~sD~~~~~~~~~~L~~~gi~-----------------~~~G~~~~~~~~~ 80 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARAL--GHTVTGSDANIYPPMSTQLEQAGVT-----------------IEEGYLIAHLQPA 80 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCCTTHHHHHHHTTCE-----------------EEESCCGGGGCSC
T ss_pred CEEEEEEecHhhHHHHHHHHHhC--CCEEEEECCCCCcHHHHHHHHCCCE-----------------EECCCCHHHcCCC
Confidence 78999999999997 67777877 99999999863 334445432211 1122333442357
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------H-HHhhC-CCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------V-IADVS-KSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~-i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|. |...+..+.+ + +...+ +...+|.+..|..-.||.. +..+|++.+
T Consensus 81 ~d~vV~Spgi~~-----------~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G 148 (524)
T 3hn7_A 81 PDLVVVGNAMKR-----------GMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG 148 (524)
T ss_dssp CSEEEECTTCCT-----------TSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCcCC-----------CCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 899987733222 2222333322 1 23322 3346777777876666655 567777653
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0045 Score=62.02 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
+||+||| .||+|.-+...|.++ |..++..+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~ 39 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLA 39 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEE
Confidence 4799999 699999999988876 667877664
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0045 Score=62.02 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
+||+||| .||+|.-+...|.++ |..++..+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~ 39 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLA 39 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEE
Confidence 4799999 699999999988876 667877664
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0059 Score=60.60 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.6
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcC-CCCeEEEEE
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKC-PSIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~-~G~~V~~~D 33 (480)
||||+|+| .|++|.-+...|.++. +.++++.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 58999999 9999999999888752 345676665
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.036 Score=55.35 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..||+|+|.. +-...++..|.+.|.+|.+||..-...+.....+....| +| .. ...+++...
T Consensus 29 ~mkI~VIGaG----------~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~----l~---g~-~l~~~i~~t 90 (356)
T 3k96_A 29 KHPIAILGAG----------SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRY----LP---NY-PFPETLKAY 90 (356)
T ss_dssp CSCEEEECCS----------HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTT----BT---TC-CCCTTEEEE
T ss_pred CCeEEEECcc----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCccc----CC---CC-ccCCCeEEE
Confidence 4689999974 478899999999999999999853322211111100000 00 00 123457788
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
+++.++++++|.|+++++....++ -.+++...+++..+|++..+=+.+
T Consensus 91 ~d~~ea~~~aDvVilaVp~~~~~~-vl~~i~~~l~~~~ivvs~~kGi~~ 138 (356)
T 3k96_A 91 CDLKASLEGVTDILIVVPSFAFHE-VITRMKPLIDAKTRIAWGTKGLAK 138 (356)
T ss_dssp SCHHHHHTTCCEEEECCCHHHHHH-HHHHHGGGCCTTCEEEECCCSCBT
T ss_pred CCHHHHHhcCCEEEECCCHHHHHH-HHHHHHHhcCCCCEEEEEeCCCCc
Confidence 899999999999999998875554 235666666666689998775544
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.09 Score=54.76 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=67.7
Q ss_pred CcEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++||.|||+|..|.+ +|..|.+. |++|+++|..... .+.|.+....+ ..-.+.+ .+++
T Consensus 19 ~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~~-----------------~~g~~~~-~~~~ 78 (491)
T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNPVTQQLMNLGATI-----------------YFNHRPE-NVRD 78 (491)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCEE-----------------ESSCCGG-GGTT
T ss_pred CCEEEEEEcCHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHCCCEE-----------------ECCCCHH-HcCC
Confidence 368999999999997 89999888 9999999986532 23343321111 1011222 3578
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHH-------HHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTY-------WESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~-------v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||+.-.-|.+ .+.+.. +....+.+...++...+|-+..|..-+||.. +..+|++.+
T Consensus 79 a~~vv~s~~i~~~--------~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 145 (491)
T 2f00_A 79 ASVVVVSSAISAD--------NPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAG 145 (491)
T ss_dssp CSEEEECTTCCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 8988876332211 010000 0011122333344346777778887777665 577887643
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.026 Score=56.13 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=26.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEE
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
|+||||+|.|++|.-+...|.++ |.++|..+.
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~-p~veivain 48 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMER-NDITVVAIN 48 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-SSCEEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcC-CCeEEEEec
Confidence 46999999999999999998875 578877664
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.028 Score=55.54 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=31.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE-EC-CHHHHHHHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI-SVSRINAWN 43 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~-~~~~v~~l~ 43 (480)
|+||||+|.|++|.-+...|.++ +..+|.++ |. +++....+-
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~-~~veivain~~~~~~~~~~ll 44 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKN-PDIEVVAVNDLTDANTLAHLL 44 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTC-TTEEEEEEECSSCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhCC-CCeEEEEEeCCCCHHHHHHHh
Confidence 78999999999999999988875 56777655 43 444544443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.024 Score=54.29 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=63.3
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .-+..++..|.+ |.+|.+||+.....+..... ++...+
T Consensus 3 ~i~iiG~G----------~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~----------------------g~~~~~- 48 (289)
T 2cvz_A 3 KVAFIGLG----------AMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE----------------------FGSEAV- 48 (289)
T ss_dssp CEEEECCS----------TTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH----------------------HCCEEC-
T ss_pred eEEEEccc----------HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC----------------------CCcccC-
Confidence 79999974 477889999999 99999999865432222111 123334
Q ss_pred HHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
+.++++++|+|+++++.+. .+. -.+.+...+++..+|+|..+..
T Consensus 49 ~~~~~~~~D~vi~~v~~~~~~~~-v~~~l~~~l~~~~~vv~~s~~~ 93 (289)
T 2cvz_A 49 PLERVAEARVIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGE 93 (289)
T ss_dssp CGGGGGGCSEEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCC
T ss_pred HHHHHhCCCEEEEeCCChHHHHH-HHHHHHhhCCCCCEEEECCCCC
Confidence 6778899999999999875 443 1245555566566899998765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.13 Score=51.70 Aligned_cols=129 Identities=15% Similarity=0.041 Sum_probs=75.2
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC--------CCCCCCC
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP--------LHLQPMS 393 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 393 (480)
+.+.||+|+|.. .-.+..++.|...|++|.+||+.....+...+++ ..+..- ...++++
T Consensus 182 v~~~kV~ViG~G----------~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lG---a~~~~l~~~~~~~~gya~~~~ 248 (381)
T 3p2y_A 182 VKPASALVLGVG----------VAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVG---AQWLDLGIDAAGEGGYARELS 248 (381)
T ss_dssp ECCCEEEEESCS----------HHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTT---CEECCCC-------------C
T ss_pred cCCCEEEEECch----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC---CeEEeccccccccccchhhhh
Confidence 477899999974 4778899999999999999999876543333332 111000 0000000
Q ss_pred cccccceEEecCHHhhcccccEEEEEecCccc--ccccHHHHHHhcCCCCEEEEcC----CCCCh----hhhhhcCcEEE
Q 011641 394 PTMVKQVSVVWDAYEATKDAHGVCILTEWDEF--KTLDYQRIYDNMQKPAFVFDGR----NVVDA----NKLREIGFIVY 463 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~--~~~~~~~~~~~~~~~~~viD~~----~~~~~----~~~~~~g~~y~ 463 (480)
... ......++.++++++|+||..+..|.= ..+=-++..+.|++..+|||.- +.++- ......|+.++
T Consensus 249 ~~~--~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~ 326 (381)
T 3p2y_A 249 EAE--RAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTIT 326 (381)
T ss_dssp HHH--HHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEE
T ss_pred HHH--HhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEE
Confidence 000 000123577889999999976544421 1112256778899888999985 34431 11223566665
Q ss_pred Ee
Q 011641 464 SI 465 (480)
Q Consensus 464 ~i 465 (480)
++
T Consensus 327 ~v 328 (381)
T 3p2y_A 327 SP 328 (381)
T ss_dssp CC
T ss_pred ee
Confidence 55
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.021 Score=55.80 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|+.. -+..++..|.+.|.+|.+||+.....+...+ .++...
T Consensus 30 ~~~I~iIG~G~----------mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~ 77 (316)
T 2uyy_A 30 DKKIGFLGLGL----------MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ----------------------EGARLG 77 (316)
T ss_dssp SSCEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSGGGGHHHHH----------------------TTCEEC
T ss_pred CCeEEEEcccH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------cCCEEc
Confidence 36899999754 7789999999999999999986543222211 124556
Q ss_pred cCHHhhcccccEEEEEecCcc-cccccHHH---HHHhcCCCCEEEEcCCCC
Q 011641 404 WDAYEATKDAHGVCILTEWDE-FKTLDYQR---IYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~---~~~~~~~~~~viD~~~~~ 450 (480)
.++.++++++|+|+++++.+. .+.. ... +...+.+..+|+|..+..
T Consensus 78 ~~~~~~~~~~DvVi~av~~~~~~~~v-~~~~~~~~~~l~~~~~vv~~s~~~ 127 (316)
T 2uyy_A 78 RTPAEVVSTCDITFACVSDPKAAKDL-VLGPSGVLQGIRPGKCYVDMSTVD 127 (316)
T ss_dssp SCHHHHHHHCSEEEECCSSHHHHHHH-HHSTTCGGGGCCTTCEEEECSCCC
T ss_pred CCHHHHHhcCCEEEEeCCCHHHHHHH-HcCchhHhhcCCCCCEEEECCCCC
Confidence 788899999999999998643 2221 111 123455566899999865
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.04 Score=57.33 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=71.3
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccc------
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTM------ 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 396 (480)
..-||+|+|+.| -.+.++..|.+.|.+|.+||..-..-+.... . .-|+. .+.....
T Consensus 7 ~~~~I~VIG~G~----------vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~---~----~~~i~-e~gl~~~l~~~~~ 68 (478)
T 2y0c_A 7 GSMNLTIIGSGS----------VGLVTGACLADIGHDVFCLDVDQAKIDILNN---G----GVPIH-EPGLKEVIARNRS 68 (478)
T ss_dssp CCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHT---T----CCSSC-CTTHHHHHHHHHH
T ss_pred CCceEEEECcCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHC---C----CCCcC-CCCHHHHHHHhcc
Confidence 356999999988 7899999999999999999975332221111 0 01110 0000000
Q ss_pred ccceEEecCHHhhcccccEEEEEecCc---------ccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 397 VKQVSVVWDAYEATKDAHGVCILTEWD---------EFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~ad~vvi~t~~~---------~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
..++.+.+++.++++++|+++++++-| .+..--.+.+...+++..+|++...+.
T Consensus 69 ~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~ 131 (478)
T 2y0c_A 69 AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVP 131 (478)
T ss_dssp TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcC
Confidence 124778889989999999999998875 222212345666677667889987553
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0086 Score=59.15 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=48.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCH----HHHHHH---HcCCCCCcCCChHHHHhhhcCCCEEEecCHH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV----SRINAW---NSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~----~~v~~l---~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
|+|.|.|+ |++|..++..|.+. |++|++++|++ ++.+.+ ......+.. +.+.-..++.
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~------------~Dl~d~~~l~ 76 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA--HRPTYILARPGPRSPSKAKIFKALEDKGAIIVY------------GLINEQEAME 76 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT--TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEE------------CCTTCHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHC--CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEE------------eecCCHHHHH
Confidence 68999997 99999999999998 89999999976 454433 222111111 1111112344
Q ss_pred Hhhc--cCcEEEEecc
Q 011641 74 KHVS--EADIVFVSVN 87 (480)
Q Consensus 74 ~a~~--~aDvVii~Vp 87 (480)
++++ ++|+||-+.+
T Consensus 77 ~~~~~~~~d~Vi~~a~ 92 (346)
T 3i6i_A 77 KILKEHEIDIVVSTVG 92 (346)
T ss_dssp HHHHHTTCCEEEECCC
T ss_pred HHHhhCCCCEEEECCc
Confidence 5667 8999999875
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.09 Score=54.50 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred CcEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+++|.|||+|..|.+ +|..|.+. |++|+++|..... .+.|.+.... +..-.+.+ .+++
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~-----------------~~~g~~~~-~~~~ 77 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGAK-----------------IYIGHAEE-HIEG 77 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTCE-----------------EEESCCGG-GGTT
T ss_pred CCEEEEEeecHHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHHHhCCCE-----------------EECCCCHH-HcCC
Confidence 368999999999997 99999988 9999999986532 2334332111 11112332 3578
Q ss_pred CcEEEEeccCCCCCCCCC---CCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 79 ADIVFVSVNTPTKTQGLG---AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~---~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||+.-.-|.+..-.. ...-+-++.. +.+...++...+|-+..|..-+||.. +..+|++.+
T Consensus 78 a~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~----~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 144 (475)
T 1p3d_A 78 ASVVVVSSAIKDDNPELVTSKQKRIPVIQRA----QMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAK 144 (475)
T ss_dssp CSEEEECTTSCTTCHHHHHHHHTTCCEEEHH----HHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEHH----HHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 998887632221100000 0000111111 12223333345777778887777665 577887653
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0039 Score=57.57 Aligned_cols=69 Identities=10% Similarity=0.323 Sum_probs=44.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHH-HHHH-HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVS-RINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~-~v~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
.+|+|+|+|.+|..++..+.....|+++. ++|.|++ ++.. .-.| .| +.-.+++++.++
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~G-vp-----------------V~~~~dL~~~v~~ 146 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDG-IP-----------------VYGISTINDHLID 146 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTC-CB-----------------EEEGGGHHHHC-C
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECC-eE-----------------EeCHHHHHHHHHH
Confidence 47999999999999998742111277755 5799987 5432 1111 12 222355666554
Q ss_pred -cCcEEEEeccC
Q 011641 78 -EADIVFVSVNT 88 (480)
Q Consensus 78 -~aDvVii~Vpt 88 (480)
+.|.+++|+|+
T Consensus 147 ~~Id~vIIAvPs 158 (212)
T 3keo_A 147 SDIETAILTVPS 158 (212)
T ss_dssp CSCCEEEECSCG
T ss_pred cCCCEEEEecCc
Confidence 58999999884
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.064 Score=51.54 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=72.4
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC---EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA---RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~---~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
..||+|+|.. +.+..++..|.+.|. +|.+||+.....+.... ..++
T Consensus 3 ~~~I~iIG~G----------~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~---------------------~~gi 51 (280)
T 3tri_A 3 TSNITFIGGG----------NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKE---------------------KCGV 51 (280)
T ss_dssp CSCEEEESCS----------HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHH---------------------TTCC
T ss_pred CCEEEEEccc----------HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHH---------------------HcCC
Confidence 4689999974 588899999999998 99999997654322211 0146
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHh-cCCCCEEEEcCCCCChhhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDN-MQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~-~~~~~~viD~~~~~~~~~~~~ 457 (480)
....+..++++++|+|+++++...++++ ++++... +++..+|+..-+=+....+.+
T Consensus 52 ~~~~~~~~~~~~aDvVilav~p~~~~~v-l~~l~~~~l~~~~iiiS~~agi~~~~l~~ 108 (280)
T 3tri_A 52 HTTQDNRQGALNADVVVLAVKPHQIKMV-CEELKDILSETKILVISLAVGVTTPLIEK 108 (280)
T ss_dssp EEESCHHHHHSSCSEEEECSCGGGHHHH-HHHHHHHHHTTTCEEEECCTTCCHHHHHH
T ss_pred EEeCChHHHHhcCCeEEEEeCHHHHHHH-HHHHHhhccCCCeEEEEecCCCCHHHHHH
Confidence 6778899999999999999976555442 3456655 554447887766666555543
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.043 Score=53.55 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=64.7
Q ss_pred EEEEE-CC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 3 KICCI-GA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 3 kI~VI-Gl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+++|| |+ |.+|...+..|.+. |++ .++++||.+. +. .+ .++.+..+++++.+ .
T Consensus 15 siaVV~Gasg~~G~~~~~~l~~~--G~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 71 (305)
T 2fp4_A 15 TKVICQGFTGKQGTFHSQQALEY--GTN-LVGGTTPGKG-----GK-TH--------------LGLPVFNTVKEAKEQTG 71 (305)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred cEEEEECCCCCHHHHHHHHHHHC--CCc-EEEEeCCCcC-----cc-eE--------------CCeeeechHHHhhhcCC
Confidence 58888 98 99999999999988 898 5567776431 00 00 24677788888777 8
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++++|.+ ...++++++... .-..+|+..+.++....+++.+..++.
T Consensus 72 vD~avI~vP~~---------------~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 72 ATASVIYVPPP---------------FAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp CCEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHHHHHhc
Confidence 99999998842 234455554432 223445443333322223565566554
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.034 Score=53.09 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=63.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|.. .-+..++..|.+.|.+|.+||+.....+.....+ .. .....+
T Consensus 2 ~i~iiG~G----------~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g------------------~~--~~~~~~ 51 (279)
T 2f1k_A 2 KIGVVGLG----------LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ------------------LV--DEAGQD 51 (279)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT------------------SC--SEEESC
T ss_pred EEEEEcCc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCC------------------CC--ccccCC
Confidence 78999974 4778899999999999999998643322211111 00 023567
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
+.++ +++|+|+++++.+...+. .+++...+++..+|+|..++
T Consensus 52 ~~~~-~~~D~vi~av~~~~~~~~-~~~l~~~~~~~~~vv~~~~~ 93 (279)
T 2f1k_A 52 LSLL-QTAKIIFLCTPIQLILPT-LEKLIPHLSPTAIVTDVASV 93 (279)
T ss_dssp GGGG-TTCSEEEECSCHHHHHHH-HHHHGGGSCTTCEEEECCSC
T ss_pred HHHh-CCCCEEEEECCHHHHHHH-HHHHHhhCCCCCEEEECCCC
Confidence 7887 999999999997654442 34566666666699998553
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.026 Score=53.12 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=68.1
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEEcCCCChHHHH-HhhhccccCCCCCCCCCCCCcccccc
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA----RLSIYDPQVTEDQIQ-RDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.||+|+|+.. .+..+++.|.+.|. +|.+||+.-...+.. ..+ +
T Consensus 3 ~~i~iIG~G~----------mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~----------------------g 50 (247)
T 3gt0_A 3 KQIGFIGCGN----------MGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY----------------------G 50 (247)
T ss_dssp CCEEEECCSH----------HHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH----------------------C
T ss_pred CeEEEECccH----------HHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh----------------------C
Confidence 4899999754 78899999999998 999999864332211 111 3
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
+....+..++++++|+|+++++...+.++ ++++...+++..+|+..-+-++.+.+++
T Consensus 51 ~~~~~~~~e~~~~aDvVilav~~~~~~~v-~~~l~~~l~~~~~vvs~~~gi~~~~l~~ 107 (247)
T 3gt0_A 51 LTTTTDNNEVAKNADILILSIKPDLYASI-INEIKEIIKNDAIIVTIAAGKSIESTEN 107 (247)
T ss_dssp CEECSCHHHHHHHCSEEEECSCTTTHHHH-C---CCSSCTTCEEEECSCCSCHHHHHH
T ss_pred CEEeCChHHHHHhCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEecCCCCHHHHHH
Confidence 56678899999999999999965544432 2344444554458886666666655543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=61.43 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.8
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|||.|.| +|++|..++..|.++ |++|+++++++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~--G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG--GHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCC
Confidence 58999999 699999999999998 9999999998653
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.021 Score=54.93 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhC--CCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD--KARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~--g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..+|+|+|+.. .+..++..|.+. |.+|.+||+.....+.....+ . ...
T Consensus 6 ~~~I~iIG~G~----------mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g------------------~--~~~ 55 (290)
T 3b1f_A 6 EKTIYIAGLGL----------IGASLALGIKRDHPHYKIVGYNRSDRSRDIALERG------------------I--VDE 55 (290)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTT------------------S--CSE
T ss_pred cceEEEEeeCH----------HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcC------------------C--ccc
Confidence 46899999854 778899999987 689999998643322211111 0 003
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHh-cCCCCEEEEcCCCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDN-MQKPAFVFDGRNVVD 451 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~-~~~~~~viD~~~~~~ 451 (480)
...++.++++++|+|+++++.+...++ .+++... +++..+|+|..+...
T Consensus 56 ~~~~~~~~~~~aDvVilavp~~~~~~v-~~~l~~~~l~~~~ivi~~~~~~~ 105 (290)
T 3b1f_A 56 ATADFKVFAALADVIILAVPIKKTIDF-IKILADLDLKEDVIITDAGSTKY 105 (290)
T ss_dssp EESCTTTTGGGCSEEEECSCHHHHHHH-HHHHHTSCCCTTCEEECCCSCHH
T ss_pred ccCCHHHhhcCCCEEEEcCCHHHHHHH-HHHHHhcCCCCCCEEEECCCCch
Confidence 456778888999999999998776442 3456665 666669999877643
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.03 Score=55.78 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=32.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|+|+|+|.+|..+|..+... |.+|+++|+++++
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~--GakVvvsD~~~~~ 210 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTER 210 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCccH
Confidence 4799999999999999999987 8999999999875
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.011 Score=54.29 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=29.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|+|||+|..|+++|..|+++ |++|+++|.++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence 599999999999999999999 99999999864
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.038 Score=54.06 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.9
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||+|.|.| .|.+|..++..|++. |++|+++|++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ--GIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC--CCEEEEEeCC
Confidence 78999999 699999999999998 9999999974
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.057 Score=50.94 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=66.5
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.||+|+|+.. .+..+++.|.+.|.+|.+||+.....+ +...+ ++...
T Consensus 4 m~i~iiG~G~----------mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------------------g~~~~ 51 (259)
T 2ahr_A 4 MKIGIIGVGK----------MASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------------------ALPYA 51 (259)
T ss_dssp CEEEEECCSH----------HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------------------TCCBC
T ss_pred cEEEEECCCH----------HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------------------CCEee
Confidence 4899999754 678899999999999999998643221 11111 23445
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
.++.++++++|+|+++++.... ..+...+++..+|+|.-+-++.+.+++
T Consensus 52 ~~~~~~~~~~D~Vi~~v~~~~~-----~~v~~~l~~~~~vv~~~~~~~~~~l~~ 100 (259)
T 2ahr_A 52 MSHQDLIDQVDLVILGIKPQLF-----ETVLKPLHFKQPIISMAAGISLQRLAT 100 (259)
T ss_dssp SSHHHHHHTCSEEEECSCGGGH-----HHHHTTSCCCSCEEECCTTCCHHHHHH
T ss_pred CCHHHHHhcCCEEEEEeCcHhH-----HHHHHHhccCCEEEEeCCCCCHHHHHH
Confidence 6788889999999999984332 234444444558999977666655543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.016 Score=56.24 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=47.1
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHH---HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS-RINA---WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~---l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+|.|.|. |.+|..++..|.+. |++|++++|+++ +.+. +......+.. +.+.-..++.++++
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~------------~Dl~d~~~l~~a~~ 78 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKL--GHPTYVFTRPNSSKTTLLDEFQSLGAIIVK------------GELDEHEKLVELMK 78 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHT--TCCEEEEECTTCSCHHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred eEEEECCCchHHHHHHHHHHHC--CCcEEEEECCCCchhhHHHHhhcCCCEEEE------------ecCCCHHHHHHHHc
Confidence 7999995 99999999999998 999999999874 3222 2221111110 11110123455678
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++|+||.+.+
T Consensus 79 ~~d~vi~~a~ 88 (318)
T 2r6j_A 79 KVDVVISALA 88 (318)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 9999998865
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.067 Score=49.68 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.+|..-+..|.+. |.+|++++.+.
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~ 64 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTV 64 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5799999999999999999998 89999998754
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.047 Score=53.85 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=31.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEE-C-CHHHHHHHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-I-SVSRINAWN 43 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-~-~~~~v~~l~ 43 (480)
|+||||+|.|++|.-+...+..+ |..+|.++. . +.+....|.
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~-~~veiv~i~~~~~~~~~a~l~ 44 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKR-SDIEIVAINDLLDADYMAYML 44 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSCHHHHHHHH
T ss_pred CeEEEEECcCHHHHHHHHHHHcC-CCeEEEEEcCCCChhHHhHhh
Confidence 68999999999999999998876 567776653 3 455444333
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.1 Score=50.44 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++. ++..+.++.+++|.|+|.+- .-...++..|...|++|.+.+-.
T Consensus 149 p~gi~~l-l~~~~i~l~gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~-------------------- 198 (301)
T 1a4i_A 149 PKGCLEL-IKETGVPIAGRHAVVVGRSK---------IVGAPMHDLLLWNNATVTTCHSK-------------------- 198 (301)
T ss_dssp HHHHHHH-HHTTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTT--------------------
T ss_pred HHHHHHH-HHHcCCCCCCCEEEEECCCc---------hHHHHHHHHHHhCCCeEEEEECC--------------------
Confidence 3444343 34445578999999999631 34788999999999999998632
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV 449 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~ 449 (480)
..++.+.++.||.||.++..+.|-.-+| .++.++|||.---
T Consensus 199 ----------------t~~L~~~~~~ADIVI~Avg~p~~I~~~~------vk~GavVIDVgi~ 239 (301)
T 1a4i_A 199 ----------------TAHLDEEVNKGDILVVATGQPEMVKGEW------IKPGAIVIDCGIN 239 (301)
T ss_dssp ----------------CSSHHHHHTTCSEEEECCCCTTCBCGGG------SCTTCEEEECCCB
T ss_pred ----------------cccHHHHhccCCEEEECCCCcccCCHHH------cCCCcEEEEccCC
Confidence 1356788999999999999998744333 3556799998653
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.058 Score=56.06 Aligned_cols=115 Identities=10% Similarity=0.213 Sum_probs=77.1
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+|+|+|++ +....++..|.++|.+|.+||......+ +...++ ..| ...++....
T Consensus 3 kIgVIG~G----------~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g------~~~---------~~~~i~~~~ 57 (478)
T 1pgj_A 3 DVGVVGLG----------VMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA------SAP---------FAGNLKAFE 57 (478)
T ss_dssp SEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT------TST---------TGGGEEECS
T ss_pred EEEEEChH----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC------CCC---------CCCCeEEEC
Confidence 69999985 4788999999999999999998543322 111111 001 012366778
Q ss_pred CHHhhccc---ccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChh------hhhhcCcEEEEec
Q 011641 405 DAYEATKD---AHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDAN------KLREIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~---ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~------~~~~~g~~y~~iG 466 (480)
++++++++ +|+|+++++.+ ..++ -.+.+...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 58 ~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~p 128 (478)
T 1pgj_A 58 TMEAFAASLKKPRKALILVQAGAATDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG 128 (478)
T ss_dssp CHHHHHHHBCSSCEEEECCCCSHHHHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHhcccCCCEEEEecCChHHHHH-HHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEee
Confidence 88888774 99999999986 4444 2356677776666999998877432 2233577776553
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.02 Score=55.07 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=48.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEECCHHHH--HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRI--NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v--~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+|.|.|. |.+|..++..|+++ | ++|++++|++++. +.+......+.. +.+.-..++.++++
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~--g~~~V~~~~R~~~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~ 71 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED--GTFKVRVVTRNPRKKAAKELRLQGAEVVQ------------GDQDDQVIMELALN 71 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CSSEEEEEESCTTSHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHhc--CCceEEEEEcCCCCHHHHHHHHCCCEEEE------------ecCCCHHHHHHHHh
Confidence 68999997 99999999999998 7 9999999987653 233321111100 11110123445678
Q ss_pred cCcEEEEecc
Q 011641 78 EADIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++|+||.+.+
T Consensus 72 ~~d~vi~~a~ 81 (299)
T 2wm3_A 72 GAYATFIVTN 81 (299)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEEeCC
Confidence 8999998864
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.069 Score=53.54 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=59.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC----HHHHHH-HHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS----VSRINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~----~~~v~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||.|+|+|.+|...|..|... |. +|+++|++ .++.+. ++ ..++.+.+.. ....-..+++++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~--G~~~I~v~Dr~Gli~~~R~~~~L~---------~~k~~~A~~~-~~~~~~~~L~ea 260 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDL--GVKNVVAVDRKGILNENDPETCLN---------EYHLEIARIT-NPERLSGDLETA 260 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETTEECCTTSGGGCSS---------HHHHHHHHTS-CTTCCCSCHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCCcccCCCcccccC---------HHHHHHHHhh-hccCchhhHHHH
Confidence 4899999999999999999988 76 89999997 443110 00 0001111100 001113578899
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++++|++|=+.. |.- . -+++.+.++++.+|+..|.
T Consensus 261 v~~ADVlIG~Sa-p~l---------~--------t~emVk~Ma~~pIIfalSN 295 (388)
T 1vl6_A 261 LEGADFFIGVSR-GNI---------L--------KPEWIKKMSRKPVIFALAN 295 (388)
T ss_dssp HTTCSEEEECSC-SSC---------S--------CHHHHTTSCSSCEEEECCS
T ss_pred HccCCEEEEeCC-CCc---------c--------CHHHHHhcCCCCEEEEcCC
Confidence 999999877754 421 1 1233334556778877664
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.014 Score=55.45 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=47.4
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||.|.|. |.+|..++..|.++.+|++|+++++++++.+.+......+.. +.+.-..+..++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ------------ADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEE------------cCCCCHHHHHHHHhCCCE
Confidence 5889996 999999999998742379999999988765554432111110 111101234456778999
Q ss_pred EEEecc
Q 011641 82 VFVSVN 87 (480)
Q Consensus 82 Vii~Vp 87 (480)
||-+..
T Consensus 69 vi~~a~ 74 (286)
T 2zcu_A 69 LLLISS 74 (286)
T ss_dssp EEECC-
T ss_pred EEEeCC
Confidence 998865
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.16 Score=52.56 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhC-CC-EEEEEcCCCC----hHHHHHhhhccccCCCCCCC-CCCCCcc
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD-KA-RLSIYDPQVT----EDQIQRDLTMNKFDWDHPLH-LQPMSPT 395 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~-g~-~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 395 (480)
.-.||+|+|+.| -.+.++..|.+. |. +|.+||..-. .-+.... ...|++ ..+....
T Consensus 17 ~~mkIaVIGlG~----------mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~-------g~~~i~~~e~gl~~ 79 (478)
T 3g79_A 17 PIKKIGVLGMGY----------VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNR-------GESPLKGEEPGLEE 79 (478)
T ss_dssp SCCEEEEECCST----------THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTT-------TCCCSSCCGGGHHH
T ss_pred CCCEEEEECcCH----------HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHh-------cCCCccccCCCHHH
Confidence 346999999987 779999999999 99 9999998765 3222111 001110 0000000
Q ss_pred ------cccceEEecCHHhhcccccEEEEEecCccc--cc--cc-------HHHHHHhcCCCCEEEEcCCCCC
Q 011641 396 ------MVKQVSVVWDAYEATKDAHGVCILTEWDEF--KT--LD-------YQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 396 ------~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~--~~--~~-------~~~~~~~~~~~~~viD~~~~~~ 451 (480)
....+.+.++ .+++++||+++++++-+.- .+ .| .+.+...+++..+|||...+..
T Consensus 80 l~~~~~~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p 151 (478)
T 3g79_A 80 LIGKVVKAGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP 151 (478)
T ss_dssp HHHHHHHTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred HHHhhcccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence 0244777777 7899999999999876631 11 22 2466777777779999876654
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.054 Score=51.22 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=61.8
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.. ....++..|.+.|.+|.+||+.-.++... .+. ..++. .+
T Consensus 2 ~I~iIG~G~----------mG~~la~~l~~~g~~V~~~~~~~~~~~~~-~~~-------------------~~g~~--~~ 49 (264)
T 1i36_A 2 RVGFIGFGE----------VAQTLASRLRSRGVEVVTSLEGRSPSTIE-RAR-------------------TVGVT--ET 49 (264)
T ss_dssp EEEEESCSH----------HHHHHHHHHHHTTCEEEECCTTCCHHHHH-HHH-------------------HHTCE--EC
T ss_pred eEEEEechH----------HHHHHHHHHHHCCCeEEEeCCccCHHHHH-HHH-------------------HCCCc--CC
Confidence 799999754 78899999999999999999842332221 111 01233 56
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
+.++++++|+|+++++.+..... ...+...++ + +|+|..++-
T Consensus 50 ~~~~~~~aDvvi~~v~~~~~~~~-~~~~~~~~~-~-~vi~~s~~~ 91 (264)
T 1i36_A 50 SEEDVYSCPVVISAVTPGVALGA-ARRAGRHVR-G-IYVDINNIS 91 (264)
T ss_dssp CHHHHHTSSEEEECSCGGGHHHH-HHHHHTTCC-S-EEEECSCCC
T ss_pred HHHHHhcCCEEEEECCCHHHHHH-HHHHHHhcC-c-EEEEccCCC
Confidence 78888999999999998753321 245555554 4 899996553
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.024 Score=54.54 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=65.0
Q ss_pred CeEEEEee-ccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 325 KKIAVLGF-AFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 325 ~~v~ilGl-a~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.+|+|+|+ .. .+..+++.|.+.|.+|.+||+.....+....+ ++..
T Consensus 12 m~I~iIG~tG~----------mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~----------------------g~~~- 58 (286)
T 3c24_A 12 KTVAILGAGGK----------MGARITRKIHDSAHHLAAIEIAPEGRDRLQGM----------------------GIPL- 58 (286)
T ss_dssp CEEEEETTTSH----------HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT----------------------TCCC-
T ss_pred CEEEEECCCCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc----------------------CCCc-
Confidence 48999997 43 77899999999999999999854322211111 1222
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
.+..++++++|+|+++++.+..+++ .+++...+++..+|+|+.+..+
T Consensus 59 ~~~~~~~~~aDvVi~av~~~~~~~v-~~~l~~~l~~~~ivv~~s~~~~ 105 (286)
T 3c24_A 59 TDGDGWIDEADVVVLALPDNIIEKV-AEDIVPRVRPGTIVLILDAAAP 105 (286)
T ss_dssp CCSSGGGGTCSEEEECSCHHHHHHH-HHHHGGGSCTTCEEEESCSHHH
T ss_pred CCHHHHhcCCCEEEEcCCchHHHHH-HHHHHHhCCCCCEEEECCCCch
Confidence 2567788999999999988765442 2455555665569999877654
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.018 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|..|+.+|..|++. |.+|+++++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~--g~~v~lie~~~ 34 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARA--GLKVLVLDGGR 34 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 67999999999999999999998 99999999875
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.082 Score=52.46 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCC-eEEEEECC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
|||.|.| .|.+|..++..|+++ |+ +|+..|++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~--g~~~v~~~d~~ 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CCCEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 8999999 799999999999998 88 99999984
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.11 Score=50.00 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++. ++..+.++.+++|.|+|.+- .-...++..|...|++|.+.+-..
T Consensus 143 p~gi~~l-l~~~~i~l~gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~t------------------- 193 (288)
T 1b0a_A 143 PRGIVTL-LERYNIDTFGLNAVVIGASN---------IVGRPMSMELLLAGCTTTVTHRFT------------------- 193 (288)
T ss_dssp HHHHHHH-HHHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHTTTCEEEEECSSC-------------------
T ss_pred HHHHHHH-HHHcCCCCCCCEEEEECCCh---------HHHHHHHHHHHHCCCeEEEEeCCc-------------------
Confidence 3444443 44455678999999999632 247889999999999999986221
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.+++||.||.++..+.|-.-+| .++.++|||.-
T Consensus 194 -----------------~~L~~~~~~ADIVI~Avg~p~lI~~~~------vk~GavVIDVg 231 (288)
T 1b0a_A 194 -----------------KNLRHHVENADLLIVAVGKPGFIPGDW------IKEGAIVIDVG 231 (288)
T ss_dssp -----------------SCHHHHHHHCSEEEECSCCTTCBCTTT------SCTTCEEEECC
T ss_pred -----------------hhHHHHhccCCEEEECCCCcCcCCHHH------cCCCcEEEEcc
Confidence 356788999999999999998744333 35567999975
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.068 Score=54.84 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=66.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.|||+|..|.+.|..|+++ |++|+++|.....- +...+. .| -++..-....+.+.++|.
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~-----~~~~l~-~G----------~~~~~g~~~~~~~~~~d~ 67 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPP-----GLDKLP-EA----------VERHTGSLNDEWLMAADL 67 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSSSCT-----TGGGSC-TT----------SCEEESSCCHHHHHTCSE
T ss_pred CEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCCCcc-----hhHHhh-CC----------CEEEECCCcHHHhccCCE
Confidence 6899999999999999888888 99999999854310 000000 01 112212212445678999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH----------HHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA----------RVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~----------~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
||++..-|.+ .+ .+..+. +.+...++ ..+|-+..|..-+||.. +..+|++.+
T Consensus 68 vV~s~gi~~~--------~p---~~~~a~~~~~~v~~~~~~~~~~~~-~~vI~VTGTnGKTTT~~ml~~iL~~~g 130 (439)
T 2x5o_A 68 IVASPGIALA--------HP---SLSAAADAGIEIVGDIELFCREAQ-APIVAITGSNGKSTVTTLVGEMAKAAG 130 (439)
T ss_dssp EEECTTSCTT--------CH---HHHHHHHTTCEEECHHHHHHHHCC-SCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCC--------CH---HHHHHHHCCCcEEEHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 9887433221 11 122211 11222333 56777778887777665 567787653
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.088 Score=51.48 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECC---HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe--cCH---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS---VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TDV--- 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~---~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d~--- 72 (480)
.++.|+|+|-+|.+++..|++. |. +|++++|+ .++.+++.+. +-.. ....+... .+.
T Consensus 149 k~~lVlGAGGaaraia~~L~~~--G~~~v~v~nRt~~~~~~a~~la~~-----------~~~~-~~~~v~~~~~~~l~~~ 214 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIE--GIKEIKLFNRKDDFFEKAVAFAKR-----------VNEN-TDCVVTVTDLADQHAF 214 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTHHHHHHHHHHH-----------HHHH-SSCEEEEEETTCHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCEEEEEECCCchHHHHHHHHHH-----------hhhc-cCcceEEechHhhhhh
Confidence 4789999999999999999998 87 89999999 8877776531 0000 00112221 232
Q ss_pred HHhhccCcEEEEeccCC
Q 011641 73 EKHVSEADIVFVSVNTP 89 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp 89 (480)
.+.+.++|+||-|+|..
T Consensus 215 ~~~l~~~DiIINaTp~G 231 (312)
T 3t4e_A 215 TEALASADILTNGTKVG 231 (312)
T ss_dssp HHHHHHCSEEEECSSTT
T ss_pred HhhccCceEEEECCcCC
Confidence 44578899999997754
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.02 Score=55.05 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=63.4
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. .+..++..|.+.|.+|.+|| .....+.... .++....
T Consensus 4 m~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~----------------------~g~~~~~ 50 (295)
T 1yb4_A 4 MKLGFIGLGI----------MGSPMAINLARAGHQLHVTT-IGPVADELLS----------------------LGAVNVE 50 (295)
T ss_dssp CEEEECCCST----------THHHHHHHHHHTTCEEEECC-SSCCCHHHHT----------------------TTCBCCS
T ss_pred CEEEEEccCH----------HHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH----------------------cCCcccC
Confidence 4899999754 77899999999999999999 5433221111 1244567
Q ss_pred CHHhhcccccEEEEEecCcc-cccccH--HHHHHhcCCCCEEEEcCCCC
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTLDY--QRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~~~--~~~~~~~~~~~~viD~~~~~ 450 (480)
++.++++++|+|+++++.+. .+..-. +.+...+++..+|+|..+..
T Consensus 51 ~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 99 (295)
T 1yb4_A 51 TARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSIS 99 (295)
T ss_dssp SHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCC
T ss_pred CHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCC
Confidence 88899999999999997764 222100 02223455556899998874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.085 Score=45.59 Aligned_cols=108 Identities=12% Similarity=-0.004 Sum_probs=66.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHH-hhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQR-DLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
...+.+|+|+|... -+..+++.|.+.|++|.++|+.....+... .. +
T Consensus 16 ~~~~~~v~IiG~G~----------iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~----------------------g 63 (155)
T 2g1u_A 16 KQKSKYIVIFGCGR----------LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEF----------------------S 63 (155)
T ss_dssp -CCCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTC----------------------C
T ss_pred ccCCCcEEEECCCH----------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcC----------------------C
Confidence 45678999999754 678999999999999999998543211100 00 1
Q ss_pred eE-Eec------CHHhh-cccccEEEEEecCcccccccHHHHHHh-cCCCCEEEEcCCCCChhhhhhcCcE
Q 011641 400 VS-VVW------DAYEA-TKDAHGVCILTEWDEFKTLDYQRIYDN-MQKPAFVFDGRNVVDANKLREIGFI 461 (480)
Q Consensus 400 ~~-~~~------~~~~a-~~~ad~vvi~t~~~~~~~~~~~~~~~~-~~~~~~viD~~~~~~~~~~~~~g~~ 461 (480)
.. +.. .+.++ ++++|+|+++|+.++.... ...+... .+...+|....+.-..+.+++.|..
T Consensus 64 ~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~-~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~ 133 (155)
T 2g1u_A 64 GFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFF-ISMNARYMFNVENVIARVYDPEKIKIFEENGIK 133 (155)
T ss_dssp SEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHH-HHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE
T ss_pred CcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHH-HHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCc
Confidence 11 111 12333 6789999999998764332 2233333 3334467777666666666666654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.043 Score=50.50 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|... -+..+++.|.+.|.+|.++|..... . ..+. ..++...
T Consensus 28 ~~~I~iiG~G~----------~G~~la~~l~~~g~~V~~~~r~~~~--~-~~~~-------------------~~g~~~~ 75 (215)
T 2vns_A 28 APKVGILGSGD----------FARSLATRLVGSGFKVVVGSRNPKR--T-ARLF-------------------PSAAQVT 75 (215)
T ss_dssp -CCEEEECCSH----------HHHHHHHHHHHTTCCEEEEESSHHH--H-HHHS-------------------BTTSEEE
T ss_pred CCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCCHHH--H-HHHH-------------------HcCCcee
Confidence 46899999754 6788999999999999999985332 2 1111 0124444
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN 453 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~ 453 (480)
+..++++++|+|++++....++++- + +....+ ..+|+|..+.+...
T Consensus 76 -~~~~~~~~~DvVi~av~~~~~~~v~-~-l~~~~~-~~~vv~~s~g~~~~ 121 (215)
T 2vns_A 76 -FQEEAVSSPEVIFVAVFREHYSSLC-S-LSDQLA-GKILVDVSNPTEQE 121 (215)
T ss_dssp -EHHHHTTSCSEEEECSCGGGSGGGG-G-GHHHHT-TCEEEECCCCCHHH
T ss_pred -cHHHHHhCCCEEEECCChHHHHHHH-H-HHHhcC-CCEEEEeCCCcccc
Confidence 6788899999999999976655532 2 433343 45999999988654
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.004 Score=57.07 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=63.9
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..+.+|+|+|+. +.+..+++.|.+.|.+|.+||+....+... ..++.
T Consensus 17 ~~~~~I~iIG~G----------~mG~~la~~L~~~G~~V~~~~r~~~~~~~~-----------------------~~g~~ 63 (201)
T 2yjz_A 17 EKQGVVCIFGTG----------DFGKSLGLKMLQCGYSVVFGSRNPQVSSLL-----------------------PRGAE 63 (201)
Confidence 356689999974 466788899999999999999864311110 01233
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
.. ++.++++++|+|+++++.+..+++- .+.. +.+..+|||..+-+.
T Consensus 64 ~~-~~~~~~~~aDvVilav~~~~~~~v~--~l~~-~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 64 VL-CYSEAASRSDVIVLAVHREHYDFLA--ELAD-SLKGRVLIDVSNNQK 109 (201)
Confidence 33 6778889999999999987766542 3333 223458999988774
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.13 Score=49.32 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=62.1
Q ss_pred HHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCc
Q 011641 315 VASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSP 394 (480)
Q Consensus 315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
++..+..+++++|.|+|.+- .-..+++..|.+.|++|.+.+-..
T Consensus 151 L~~~~i~l~Gk~vvVvGrs~---------iVG~p~A~lL~~~gAtVtv~h~~t--------------------------- 194 (285)
T 3p2o_A 151 LKAYEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT--------------------------- 194 (285)
T ss_dssp HHHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTC---------------------------
T ss_pred HHHhCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCeEEEEeCCc---------------------------
Confidence 33444578999999999521 347899999999999999976321
Q ss_pred ccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 395 TMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.++.+.++.||.||.+|..+.|-.-+ .+++..+|||.-
T Consensus 195 ---------~~L~~~~~~ADIVI~Avg~p~~I~~~------~vk~GavVIDVg 232 (285)
T 3p2o_A 195 ---------KDLSLYTRQADLIIVAAGCVNLLRSD------MVKEGVIVVDVG 232 (285)
T ss_dssp ---------SCHHHHHTTCSEEEECSSCTTCBCGG------GSCTTEEEEECC
T ss_pred ---------hhHHHHhhcCCEEEECCCCCCcCCHH------HcCCCeEEEEec
Confidence 35678899999999999999874322 346667999985
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.019 Score=56.45 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=30.7
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|+|.|.| .|++|..++..|.++ |++|+++++++
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 59 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKL--NQVVIGLDNFS 59 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence 37899999 599999999999998 99999999953
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.015 Score=58.15 Aligned_cols=30 Identities=13% Similarity=0.437 Sum_probs=24.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCC---eEEEEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D 33 (480)
|||+||| .|++|.-+...|.++ +| ++..+.
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~--~~p~~el~~~a 36 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES--TLPIDKIRYLA 36 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC--CCCEEEEEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC--CCCcEEEEEEE
Confidence 7999999 799999999999986 44 445554
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.075 Score=52.43 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCeEEEE-EC-CHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVV-DI-SVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~-D~-~~~~v~~l~ 43 (480)
+||||+|.|++|.-+...|.++. |.++|..+ |+ +++....+-
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll 45 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLL 45 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhc
Confidence 58999999999999999988752 46887755 43 555554443
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.12 Score=51.14 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHH---cCCCCeEEEEE-C-CHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVD-I-SVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~---~~~G~~V~~~D-~-~~~~v~~l~ 43 (480)
+||+|+|.|++|..+...|.+ + |..+|.++. + +++....+-
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~-~~~eivai~~~~~~~~~~~ll 48 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLL 48 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGG-GTEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCC-CCEEEEEEeCCCCHHHHHHHh
Confidence 699999999999999999887 5 467776654 3 555555544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.1 Score=50.45 Aligned_cols=120 Identities=9% Similarity=0.058 Sum_probs=69.8
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHh--------hhccccCCCC-CCCCCCCCcc
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRD--------LTMNKFDWDH-PLHLQPMSPT 395 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~ 395 (480)
++|+|+|+.. ....|+..|.+.|++|.+||+.-...+.... +...+.-... |.+. ....
T Consensus 16 ~~I~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~--~~~~ 83 (302)
T 1f0y_A 16 KHVTVIGGGL----------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDE--FVEK 83 (302)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHH--HHHH
T ss_pred CEEEEECCCH----------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchh--hHHH
Confidence 5899999854 7789999999999999999986432211000 0000000000 0000 0000
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcc-cccccHHHHHHhcCCCCEEEEcCCCCChhhhh
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDE-FKTLDYQRIYDNMQKPAFVFDGRNVVDANKLR 456 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~ 456 (480)
...+++..+++.++++++|.||+++.-+. .+.--++++...+++..+|+...+-+....+.
T Consensus 84 ~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~ 145 (302)
T 1f0y_A 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145 (302)
T ss_dssp HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred HHhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHH
Confidence 11347778889889999999999986542 12112334555555555777776666655553
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0075 Score=60.06 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=34.5
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
||+|.|.| .|++|..++..|.++ +|++|++++++++..+.+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH-SSCEEEEEESCCTTTGGG
T ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCCEEEEEeCChhhhhhh
Confidence 57899999 699999999999875 379999999987655444
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.012 Score=58.94 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=32.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||+|.|.|. |.+|..++..|+++ |++|+++++++.
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~ 64 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHE--GHYVIASDWKKN 64 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEECCCc
Confidence 589999997 99999999999998 999999999764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.018 Score=57.91 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
+||+||| .||+|.-+...|.++ |..++..+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h-p~~el~~l 50 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH-PEFEIHAL 50 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEE
T ss_pred cEEEEECCCChHHHHHHHHHHcC-CCceEEEe
Confidence 5899999 699999999999886 56777544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.26 Score=42.79 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=65.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh----c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV----S 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----~ 77 (480)
++|.-||+|. |. ++..+++..++.+|+++|++++.++..++... ..++ ..++.+..|..+.+ .
T Consensus 27 ~~vldiG~G~-G~-~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~--------~~~~~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 27 ETLWDIGGGS-GS-IAIEWLRSTPQTTAVCFEISEERRERILSNAI---NLGV--------SDRIAVQQGAPRAFDDVPD 93 (178)
T ss_dssp EEEEEESTTT-TH-HHHHHHTTSSSEEEEEECSCHHHHHHHHHHHH---TTTC--------TTSEEEECCTTGGGGGCCS
T ss_pred CeEEEeCCCC-CH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHH---HhCC--------CCCEEEecchHhhhhccCC
Confidence 4788999997 43 45556655457899999999998877664200 0010 01233333332222 4
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|+|++.-+... ...++.+...++++..++.. +........+.+.+++.
T Consensus 94 ~~D~i~~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~-~~~~~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 94 NPDVIFIGGGLTA----------------PGVFAAAWKRLPVGGRLVAN-AVTVESEQMLWALRKQF 143 (178)
T ss_dssp CCSEEEECC-TTC----------------TTHHHHHHHTCCTTCEEEEE-ECSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCcccH----------------HHHHHHHHHhcCCCCEEEEE-eeccccHHHHHHHHHHc
Confidence 5899986643210 34677788889887766543 33344445555666554
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.039 Score=54.77 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|+. ...-.++..|.+.|.+|.+||+.....+...++ ++..+
T Consensus 8 ~~kIgIIG~G----------~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~----------------------G~~~~ 55 (341)
T 3ktd_A 8 SRPVCILGLG----------LIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDE----------------------GFDVS 55 (341)
T ss_dssp SSCEEEECCS----------HHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHT----------------------TCCEE
T ss_pred CCEEEEEeec----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----------------------CCeee
Confidence 4689999974 477889999999999999999865433322222 23456
Q ss_pred cCHHhhccc----ccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 404 WDAYEATKD----AHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 404 ~~~~~a~~~----ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
.++.+++++ +|.|+++++-....++ .+++... ++..+|+|..++-
T Consensus 56 ~~~~e~~~~a~~~aDlVilavP~~~~~~v-l~~l~~~-~~~~iv~Dv~Svk 104 (341)
T 3ktd_A 56 ADLEATLQRAAAEDALIVLAVPMTAIDSL-LDAVHTH-APNNGFTDVVSVK 104 (341)
T ss_dssp SCHHHHHHHHHHTTCEEEECSCHHHHHHH-HHHHHHH-CTTCCEEECCSCS
T ss_pred CCHHHHHHhcccCCCEEEEeCCHHHHHHH-HHHHHcc-CCCCEEEEcCCCC
Confidence 778877765 6999999996554432 2455554 5556899997764
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.02 Score=56.34 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=31.5
Q ss_pred CcEEEEECCChhHHHHHHHHHH---cCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~---~~~G~~V~~~D~~~ 36 (480)
|++|+|||.|..|+.+|..|++ . |++|+++|.+.
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCC
Confidence 6789999999999999999999 7 99999999864
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.017 Score=59.91 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=31.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|.-|++.|..|+++ |++|++++.+..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~--G~~V~VlEa~~~ 35 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA--GIPVLLLEQRDK 35 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT--TCCEEEECCC--
T ss_pred CCCEEEECCcHHHHHHHHHHHHC--CCcEEEEccCCC
Confidence 78999999999999999999998 999999998653
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.26 Score=51.27 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=67.4
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+.- -...+++.|...|++|.++|+.....+....+ +.
T Consensus 271 ~l~GktV~IiG~G~----------IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~----------------------Ga 318 (494)
T 3ce6_A 271 LIGGKKVLICGYGD----------VGKGCAEAMKGQGARVSVTEIDPINALQAMME----------------------GF 318 (494)
T ss_dssp CCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----------------------TC
T ss_pred CCCcCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----------------------CC
Confidence 46889999999743 67889999999999999999975443222222 22
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
.+ .+++++++++|+|+.+|.-+.. ++ .+..+.|++.++|++.-.
T Consensus 319 ~~-~~l~e~l~~aDvVi~atgt~~~--i~-~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 319 DV-VTVEEAIGDADIVVTATGNKDI--IM-LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp EE-CCHHHHGGGCSEEEECSSSSCS--BC-HHHHHHSCTTCEEEECSS
T ss_pred EE-ecHHHHHhCCCEEEECCCCHHH--HH-HHHHHhcCCCcEEEEeCC
Confidence 32 3677889999999999876653 33 245677887778998765
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.11 Score=52.44 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=76.4
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCC-CCCCCCCCcccccce
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDH-PLHLQPMSPTMVKQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 400 (480)
+.+.||+|+|.. .-.+..++.|...|++|.+||+.....+....++ ..+.. +....+ .+ ...-
T Consensus 188 v~~~kV~ViG~G----------~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G---~~~~~~~~~~~~--d~-~~~~ 251 (405)
T 4dio_A 188 VPAAKIFVMGAG----------VAGLQAIATARRLGAVVSATDVRPAAKEQVASLG---AKFIAVEDEEFK--AA-ETAG 251 (405)
T ss_dssp ECCCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTT---CEECCCCC-------------
T ss_pred cCCCEEEEECCc----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcC---Cceeeccccccc--cc-cccc
Confidence 467899999974 4789999999999999999999887644333332 10000 000000 00 0000
Q ss_pred EE------------ecCHHhhcccccEEEEEecCcccc--cccHHHHHHhcCCCCEEEEcC----CCCCh----hhhhhc
Q 011641 401 SV------------VWDAYEATKDAHGVCILTEWDEFK--TLDYQRIYDNMQKPAFVFDGR----NVVDA----NKLREI 458 (480)
Q Consensus 401 ~~------------~~~~~~a~~~ad~vvi~t~~~~~~--~~~~~~~~~~~~~~~~viD~~----~~~~~----~~~~~~ 458 (480)
.| ..++.++++++|+||-..-.|.=+ .+=-++..+.|++..+|||.. +.++- +.....
T Consensus 252 ~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~ 331 (405)
T 4dio_A 252 GYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVG 331 (405)
T ss_dssp -------CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEET
T ss_pred chhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEEC
Confidence 01 136788899999998764333211 111256778899888999986 34432 112345
Q ss_pred CcEEEEec
Q 011641 459 GFIVYSIG 466 (480)
Q Consensus 459 g~~y~~iG 466 (480)
|+.++|+-
T Consensus 332 GV~~~gv~ 339 (405)
T 4dio_A 332 GVRIVGHL 339 (405)
T ss_dssp TEEEEECS
T ss_pred CEEEEEeC
Confidence 77777763
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.21 Score=47.96 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC
Q 011641 307 KSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++ +++..+..+++++|.|+|.+ +.-...++..|.+.|++|.+.+-.
T Consensus 145 p~gv~~-lL~~~~i~l~Gk~vvVIG~s---------~iVG~p~A~lL~~~gAtVtv~hs~-------------------- 194 (285)
T 3l07_A 145 PKGIMT-MLREYGIKTEGAYAVVVGAS---------NVVGKPVSQLLLNAKATVTTCHRF-------------------- 194 (285)
T ss_dssp HHHHHH-HHHHTTCCCTTCEEEEECCC---------TTTHHHHHHHHHHTTCEEEEECTT--------------------
T ss_pred HHHHHH-HHHHhCCCCCCCEEEEECCC---------chhHHHHHHHHHHCCCeEEEEeCC--------------------
Confidence 334444 34445557899999999952 135789999999999999997532
Q ss_pred CCCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 387 LHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
..++.+.++.||.||.+|..+.|-.-+ .+++..+|||.-
T Consensus 195 ----------------t~~L~~~~~~ADIVI~Avg~p~~I~~~------~vk~GavVIDvg 233 (285)
T 3l07_A 195 ----------------TTDLKSHTTKADILIVAVGKPNFITAD------MVKEGAVVIDVG 233 (285)
T ss_dssp ----------------CSSHHHHHTTCSEEEECCCCTTCBCGG------GSCTTCEEEECC
T ss_pred ----------------chhHHHhcccCCEEEECCCCCCCCCHH------HcCCCcEEEEec
Confidence 125678899999999999998874322 345667999985
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.066 Score=51.28 Aligned_cols=109 Identities=20% Similarity=0.164 Sum_probs=71.7
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|.. ..+..++..|.+.|++|.++|...... +.+. ..-++
T Consensus 126 ~~~~~~v~iiGaG----------~~g~aia~~L~~~g~~V~v~~r~~~~~---~~l~------------------~~~g~ 174 (275)
T 2hk9_A 126 EVKEKSILVLGAG----------GASRAVIYALVKEGAKVFLWNRTKEKA---IKLA------------------QKFPL 174 (275)
T ss_dssp TGGGSEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSSHHHH---HHHT------------------TTSCE
T ss_pred CcCCCEEEEECch----------HHHHHHHHHHHHcCCEEEEEECCHHHH---HHHH------------------HHcCC
Confidence 4567899999963 477889999999999999999864321 1111 00124
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccHHHH-HHhcCCCCEEEEcCCCCChh---hhhhcCcEE
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDYQRI-YDNMQKPAFVFDGRNVVDAN---KLREIGFIV 462 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~-~~~~~~~~~viD~~~~~~~~---~~~~~g~~y 462 (480)
...+++.++++++|+||++|+-..+.+... .+ .+.+++..+|+|.-. .... ..++.|.++
T Consensus 175 ~~~~~~~~~~~~aDiVi~atp~~~~~~~~~-~i~~~~l~~g~~viDv~~-~~t~ll~~a~~~g~~~ 238 (275)
T 2hk9_A 175 EVVNSPEEVIDKVQVIVNTTSVGLKDEDPE-IFNYDLIKKDHVVVDIIY-KETKLLKKAKEKGAKL 238 (275)
T ss_dssp EECSCGGGTGGGCSEEEECSSTTSSTTCCC-SSCGGGCCTTSEEEESSS-SCCHHHHHHHHTTCEE
T ss_pred eeehhHHhhhcCCCEEEEeCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC-ChHHHHHHHHHCcCEE
Confidence 455577888999999999998876532110 01 234555569999988 4322 234457665
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.097 Score=44.79 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=73.0
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|+|+|++-++ ++.+..+++.|.+.|++|.--+|....+++ .++..
T Consensus 12 ~p~~vaVvGas~~~------g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i-------------------------~G~~~ 60 (140)
T 1iuk_A 12 QAKTIAVLGAHKDP------SRPAHYVPRYLREQGYRVLPVNPRFQGEEL-------------------------FGEEA 60 (140)
T ss_dssp HCCEEEEETCCSST------TSHHHHHHHHHHHTTCEEEEECGGGTTSEE-------------------------TTEEC
T ss_pred CCCEEEEECCCCCC------CChHHHHHHHHHHCCCEEEEeCCCcccCcC-------------------------CCEEe
Confidence 36799999998877 578899999999999997777775211111 24556
Q ss_pred ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh---hhhhcCcEEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN---KLREIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~---~~~~~g~~y~~ 464 (480)
..++.+.-+..|.++|.+.-+.-.+. .+++.+.- ...+++. .+....+ .+++.|+++.|
T Consensus 61 ~~sl~el~~~vDlavi~vp~~~~~~v-~~~~~~~g-i~~i~~~-~g~~~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 61 VASLLDLKEPVDILDVFRPPSALMDH-LPEVLALR-PGLVWLQ-SGIRHPEFEKALKEAGIPVVA 122 (140)
T ss_dssp BSSGGGCCSCCSEEEECSCHHHHTTT-HHHHHHHC-CSCEEEC-TTCCCHHHHHHHHHTTCCEEE
T ss_pred cCCHHHCCCCCCEEEEEeCHHHHHHH-HHHHHHcC-CCEEEEc-CCcCHHHHHHHHHHcCCEEEc
Confidence 67888877789999999887544332 33444443 3345554 4555543 34467898866
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.017 Score=53.61 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=31.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCC--eEEEEECCHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSI--EVAVVDISVSR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~V~~~D~~~~~ 38 (480)
|+|.|.| .|.+|..++..|+++ |+ +|++++++++.
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~--G~~~~V~~~~r~~~~ 56 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLT 56 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHcC--CCCCEEEEEEcCCCC
Confidence 5799999 699999999999998 89 99999998653
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.095 Score=49.71 Aligned_cols=107 Identities=10% Similarity=0.000 Sum_probs=68.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCCh-HHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTE-DQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++ +|+|+|..- .+..++..|.+.|++|.++|+.... +.+...++
T Consensus 114 ~l~~-~v~iiG~G~----------~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~---------------------- 160 (263)
T 2d5c_A 114 PLKG-PALVLGAGG----------AGRAVAFALREAGLEVWVWNRTPQRALALAEEFG---------------------- 160 (263)
T ss_dssp CCCS-CEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT----------------------
T ss_pred CCCC-eEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc----------------------
Confidence 5678 999999743 6788999999999999999986543 22222221
Q ss_pred eEEecCHHhhcccccEEEEEecCcccccccHHHH-HHhcCCCCEEEEcCCCCCh----hhhhhcCcEEE
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRI-YDNMQKPAFVFDGRNVVDA----NKLREIGFIVY 463 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~-~~~~~~~~~viD~~~~~~~----~~~~~~g~~y~ 463 (480)
.. .+++.++ +++|+||++|+...+...+ ..+ .+.+++..+|+|.-..... +.+++.|.++.
T Consensus 161 ~~-~~~~~~~-~~~Divi~~tp~~~~~~~~-~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 161 LR-AVPLEKA-REARLLVNATRVGLEDPSA-SPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQ 226 (263)
T ss_dssp CE-ECCGGGG-GGCSEEEECSSTTTTCTTC-CSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCEEE
T ss_pred cc-hhhHhhc-cCCCEEEEccCCCCCCCCC-CCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCEEE
Confidence 12 3467777 8999999999987543211 001 2445555689997654221 23345676653
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.025 Score=55.94 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=45.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCC-------CCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCE-EEec--
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCP-------SIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFST-- 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-------G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~-- 70 (480)
+||+|||+|.||..++..+.++ + +.+|. ++|+++++.+.. ..+++.......+.+ .+++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~-~~~~~~g~~~~vvaV~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 76 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSF-NEENRLGLKFNVVFVADSLHSYYNER---------IDIGKVISYKEKGSLDSLEYES 76 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH-HHHCSSSEEEEEEEEECSSCEEECTT---------CCHHHHHHHHHTTCGGGCCSEE
T ss_pred EeEEEEecCHHHHHHHHHHHhC-hHHHhcCCcEEEEEEEECChHHhhcc---------cChHHHhhhhccCCcccccCCC
Confidence 5799999999999999998764 1 24554 567776542210 001111100000112 1334
Q ss_pred -CHHHhh-ccCcEEEEeccCC
Q 011641 71 -DVEKHV-SEADIVFVSVNTP 89 (480)
Q Consensus 71 -d~~~a~-~~aDvVii~Vptp 89 (480)
|+++.+ .+.|+|++|+|+.
T Consensus 77 ~d~~~ll~~~iDvVv~~t~~~ 97 (331)
T 3c8m_A 77 ISASEALARDFDIVVDATPAS 97 (331)
T ss_dssp CCHHHHHHSSCSEEEECSCCC
T ss_pred CCHHHHhCCCCCEEEECCCCC
Confidence 777755 3689999998753
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.046 Score=46.68 Aligned_cols=90 Identities=10% Similarity=0.090 Sum_probs=63.2
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+++|+|+|... -+..++..|.+.|++|.++|......+ +...++ ..+..
T Consensus 21 ~~~v~iiG~G~----------iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~--------------------~~~~~ 70 (144)
T 3oj0_A 21 GNKILLVGNGM----------LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE--------------------YEYVL 70 (144)
T ss_dssp CCEEEEECCSH----------HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT--------------------CEEEE
T ss_pred CCEEEEECCCH----------HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC--------------------CceEe
Confidence 78999999643 678899999999999999998654322 222221 12334
Q ss_pred ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 403 VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
.++++++++++|+||.+|+.+... ++. +.+++..+|+|.-.
T Consensus 71 ~~~~~~~~~~~Divi~at~~~~~~-~~~----~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 71 INDIDSLIKNNDVIITATSSKTPI-VEE----RSLMPGKLFIDLGN 111 (144)
T ss_dssp CSCHHHHHHTCSEEEECSCCSSCS-BCG----GGCCTTCEEEECCS
T ss_pred ecCHHHHhcCCCEEEEeCCCCCcE-eeH----HHcCCCCEEEEccC
Confidence 568889999999999999976432 222 33455668999855
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.075 Score=50.25 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=29.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
.+|.|||+|.+|..+|..|+.. |. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~--Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGA--GVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHc--CCCeEEEEeCCC
Confidence 4899999999999999999998 65 789999875
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.07 Score=51.70 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=62.0
Q ss_pred CCeEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 324 NKKIAVLG-FAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 324 ~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
.++|+|+| +.. .+..++..|.+.|.+|.+||+...
T Consensus 21 ~~~I~iIGg~G~----------mG~~la~~l~~~G~~V~~~~~~~~---------------------------------- 56 (298)
T 2pv7_A 21 IHKIVIVGGYGK----------LGGLFARYLRASGYPISILDREDW---------------------------------- 56 (298)
T ss_dssp CCCEEEETTTSH----------HHHHHHHHHHTTTCCEEEECTTCG----------------------------------
T ss_pred CCEEEEEcCCCH----------HHHHHHHHHHhCCCeEEEEECCcc----------------------------------
Confidence 35899999 865 778999999999999999997431
Q ss_pred ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 403 VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
.+..++++++|+|+++++.+...++ .+++...+++..+|+|.-++-
T Consensus 57 -~~~~~~~~~aDvVilavp~~~~~~v-l~~l~~~l~~~~iv~~~~svk 102 (298)
T 2pv7_A 57 -AVAESILANADVVIVSVPINLTLET-IERLKPYLTENMLLADLTSVK 102 (298)
T ss_dssp -GGHHHHHTTCSEEEECSCGGGHHHH-HHHHGGGCCTTSEEEECCSCC
T ss_pred -cCHHHHhcCCCEEEEeCCHHHHHHH-HHHHHhhcCCCcEEEECCCCC
Confidence 1346778999999999998775542 245656666667999987653
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.025 Score=56.72 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=40.2
Q ss_pred CcEEEEEC-CChhHHHHHH-HHHHcCCCC---eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIG-AGYVGGPTMA-VIALKCPSI---EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~-~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|+| .|++|.-+.. .|.++ ++ +++.+..+. .|. ++. .+. . ..-.+.-..++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~--~~~~v~i~~~~~~s-------~G~-~v~--~~~---g--~~i~~~~~~~~~~- 62 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER--DFDAIRPVFFSTSQ-------LGQ-AAP--SFG---G--TTGTLQDAFDLEA- 62 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--GGGGSEEEEEESSS-------TTS-BCC--GGG---T--CCCBCEETTCHHH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC--CCCeEEEEEEEeCC-------CCC-Ccc--ccC---C--CceEEEecCChHH-
Confidence 78999999 9999999999 55554 43 455554421 121 110 000 0 0001222234554
Q ss_pred hccCcEEEEecc
Q 011641 76 VSEADIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
++++|+||.|+|
T Consensus 63 ~~~~DvVf~a~g 74 (367)
T 1t4b_A 63 LKALDIIVTCQG 74 (367)
T ss_dssp HHTCSEEEECSC
T ss_pred hcCCCEEEECCC
Confidence 679999999976
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.22 Score=47.72 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCC
Q 011641 308 SRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++ +++..+-.+++++|.|+|-+- .-..+++..|.+.|++|.+.+-.
T Consensus 146 ~gv~~-lL~~~~i~l~Gk~vvVvGrs~---------iVG~plA~lL~~~gAtVtv~hs~--------------------- 194 (286)
T 4a5o_A 146 KGIMT-LLASTGADLYGMDAVVVGASN---------IVGRPMALELLLGGCTVTVTHRF--------------------- 194 (286)
T ss_dssp HHHHH-HHHHTTCCCTTCEEEEECTTS---------TTHHHHHHHHHHTTCEEEEECTT---------------------
T ss_pred HHHHH-HHHHhCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCC---------------------
Confidence 33434 344445578999999999521 35789999999999999997521
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
..++.+.++.||.||.++..+.|-.-+ ..++..+|||.-
T Consensus 195 ---------------T~~L~~~~~~ADIVI~Avg~p~~I~~~------~vk~GavVIDvg 233 (286)
T 4a5o_A 195 ---------------TRDLADHVSRADLVVVAAGKPGLVKGE------WIKEGAIVIDVG 233 (286)
T ss_dssp ---------------CSCHHHHHHTCSEEEECCCCTTCBCGG------GSCTTCEEEECC
T ss_pred ---------------CcCHHHHhccCCEEEECCCCCCCCCHH------HcCCCeEEEEec
Confidence 125678899999999999998874332 335667999975
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.38 Score=46.54 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=60.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHh-hccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH-VSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-~~~a 79 (480)
++|..||||..|.+. ..+++. +|.+|+++|++++.++..++. +....-.++++ ..|..+. -...
T Consensus 124 ~rVLDIGcG~G~~ta-~~lA~~-~ga~V~gIDis~~~l~~Ar~~------------~~~~gl~~v~~v~gDa~~l~d~~F 189 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTG-ILLSHV-YGMRVNVVEIEPDIAELSRKV------------IEGLGVDGVNVITGDETVIDGLEF 189 (298)
T ss_dssp CEEEEECCCSSCHHH-HHHHHT-TCCEEEEEESSHHHHHHHHHH------------HHHHTCCSEEEEESCGGGGGGCCC
T ss_pred CEEEEECCCccHHHH-HHHHHc-cCCEEEEEECCHHHHHHHHHH------------HHhcCCCCeEEEECchhhCCCCCc
Confidence 579999999866542 334553 388999999999988876541 00000023443 2333321 2468
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+|+++.-. +| ...+++.+.+.+++|..++...
T Consensus 190 DvV~~~a~~------------~d---~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAALA------------EP---KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp SEEEECTTC------------SC---HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCCc------------cC---HHHHHHHHHHHcCCCcEEEEEc
Confidence 999986431 12 2577889999999988776543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.19 Score=48.54 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCC
Q 011641 308 SRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++ +++..+..+++++|.|+|.+- .-...++..|.+.|++|.+.+-...
T Consensus 150 ~gv~~-lL~~~~i~l~Gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~~~~T~------------------- 200 (300)
T 4a26_A 150 KGVIV-LLKRCGIEMAGKRAVVLGRSN---------IVGAPVAALLMKENATVTIVHSGTS------------------- 200 (300)
T ss_dssp HHHHH-HHHHHTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTSC-------------------
T ss_pred HHHHH-HHHHcCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCeEEEEeCCCC-------------------
Confidence 33433 333445578999999999521 3578999999999999999864221
Q ss_pred CCCCCCcccccceEEecCHH--hhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCC
Q 011641 388 HLQPMSPTMVKQVSVVWDAY--EATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRN 448 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~--~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~ 448 (480)
++. +.+++||.||.+|..+.+-.-+ .+++..+|||.--
T Consensus 201 -----------------~l~l~~~~~~ADIVI~Avg~p~~I~~~------~vk~GavVIDvgi 240 (300)
T 4a26_A 201 -----------------TEDMIDYLRTADIVIAAMGQPGYVKGE------WIKEGAAVVDVGT 240 (300)
T ss_dssp -----------------HHHHHHHHHTCSEEEECSCCTTCBCGG------GSCTTCEEEECCC
T ss_pred -----------------CchhhhhhccCCEEEECCCCCCCCcHH------hcCCCcEEEEEec
Confidence 234 7789999999999999874433 2466679999853
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.05 Score=53.85 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCeEEEE-EC-CHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVV-DI-SVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~-D~-~~~~v~~l~ 43 (480)
+||||+|.|++|..+...|.++. ++++|.++ |+ +++....+.
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 69999999999999999988752 45787665 44 566655543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 480 | ||||
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 8e-23 | |
| d1mv8a3 | 136 | c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, | 3e-21 | |
| d1dlja1 | 98 | a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (U | 1e-20 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 3e-19 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 5e-18 | |
| d1mv8a1 | 98 | a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, | 3e-15 | |
| d1dlja3 | 108 | c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD | 2e-07 |
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 93.9 bits (232), Expect = 8e-23
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLD-GVVKQC 61
+I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ + +
Sbjct: 2 RISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+ L +TD +K V ++D+ F+ V + T I + S+
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHT 118
Query: 122 IVVEKSTVPVKTAEAIEKILTHN---SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
+VV + +P + ++ G+ F + +NPEFL E TAI+D P +IG
Sbjct: 119 VVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE 178
Query: 179 RETPEGQKAVKALKDVY 195
++ L+++Y
Sbjct: 179 ----LDKQTGDLLEEIY 191
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 87.5 bits (216), Expect = 3e-21
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 318 MFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLT 377
+ + +K+ +LG +FK T D RE+P +++ + L+G L I+D V ++
Sbjct: 7 LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANK 66
Query: 378 MNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 437
+ +V D E + + + + F L +
Sbjct: 67 EYIESKIPHVSSL-----------LVSDLDEVVASSDVLVLGNGDELFVDLV-----NKT 110
Query: 438 QKPAFVFDGRNVVDANKLREIGFIVY 463
+ D + + I +
Sbjct: 111 PSGKKLVDLVGFMPHTTTAQAEGICW 136
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 84.3 bits (208), Expect = 1e-20
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFG 269
AE KL AN +LA R++ N + E+ N + + D RIG + N S G+G
Sbjct: 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYG 61
Query: 270 GSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR 309
G KD L+ N +P + ++ N+ +KS
Sbjct: 62 GYSLPKDTKQLLA--NYNNIP--QTLIEAIVSSNNVRKSY 97
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 83.0 bits (204), Expect = 3e-19
Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 24/203 (11%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
+G G G A +ALK V DI RI I +G
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAII----AEGPGLAGT 56
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
++D+ V +AD++ + V + S A IA ++
Sbjct: 57 AHPDLLTSDIGLAVKDADVILIVVPAI---------------HHASIAANIASYISEGQL 101
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE---GTAIQDLFNPDRVLIGGR 179
++ E + + + + + S+ F + +
Sbjct: 102 IILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACL 161
Query: 180 ETPEGQKAVKALKDVYAHWVPED 202
+ A++ + V +V +
Sbjct: 162 PAAKAGWALEQIGSVLPQYVAVE 184
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 80.0 bits (196), Expect = 5e-18
Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +
Sbjct: 2 KIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIE---YYLK 55
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
K L ++ + + V + TPT D + E+ + + V S
Sbjct: 56 SKQLSIKATLDSKAAYKEAELVIIATPTNYN--SRINYFDTQHVETVIKEVLSV-NSHAT 112
Query: 123 VVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE-- 180
++ KST+P+ + + +I+ +PEFL E A+ D P R+++ E
Sbjct: 113 LIIKSTIPIGFITEMRQK------FQTDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166
Query: 181 TPEGQKAVKALKDVYAHWVPEDRI 204
+P+ + + + ++ +
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNV 190
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 69.4 bits (169), Expect = 3e-15
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 211 SAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVA--FAVGTDSRIGPKFLNASVGF 268
AE+ K N + A +++ N + + +A G + +V + ++ F
Sbjct: 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAF 62
Query: 269 GGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQ 306
GGSC KD+ L Y + +++ N Q
Sbjct: 63 GGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQ 98
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 47.2 bits (112), Expect = 2e-07
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 312 NRVVASMFNTVSN-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED 370
+++ + S K + V K ++ + RE+ DV L ++ IY+P + +
Sbjct: 2 KQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL 61
Query: 371 QI 372
+
Sbjct: 62 ES 63
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 480 | |||
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 100.0 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.95 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 99.91 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 99.91 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 99.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.87 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.83 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.8 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 99.78 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.78 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.75 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.69 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.68 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.66 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.63 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.62 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.54 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.5 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.49 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.44 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.43 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.43 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.4 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.17 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.1 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.89 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.84 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.71 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.71 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.7 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.7 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.69 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.63 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.61 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.61 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.61 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.51 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.49 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.44 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.41 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.41 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.39 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.36 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.34 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.32 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.29 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.27 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.21 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.19 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.17 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.15 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.15 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.14 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.12 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.11 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.1 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.09 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.08 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.08 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.07 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.02 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.98 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.98 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.96 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.93 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.92 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.91 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.84 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.83 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.82 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.79 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.78 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.75 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.75 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.61 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.6 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.55 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.54 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.54 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.52 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.5 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.49 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.47 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.4 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.38 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.36 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.35 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.33 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.29 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.29 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.27 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.27 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.26 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.25 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.23 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.19 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.19 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.17 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.15 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.07 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.07 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.04 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.03 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.97 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.9 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.87 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.83 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.74 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.71 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.65 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.63 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.59 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.59 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.47 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.46 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.46 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.45 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.44 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.4 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.37 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.34 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.31 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.29 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.27 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.24 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.2 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.15 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.14 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.01 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.01 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.99 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.98 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.98 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.97 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.96 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.88 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.84 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.83 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.82 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.78 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.77 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.73 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.7 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 95.68 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.67 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.65 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.59 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.58 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.55 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.54 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.54 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.53 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 95.52 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.52 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.5 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.49 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.49 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.47 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.46 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.43 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.4 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.37 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.19 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.18 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.15 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.12 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.12 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.12 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.1 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.1 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.07 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.07 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.07 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.04 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.03 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.02 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.0 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.89 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.89 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.89 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.83 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.77 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.74 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.73 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.72 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.67 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.63 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 94.63 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.6 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.57 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.53 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.51 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.5 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.47 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.45 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.44 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.43 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.39 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.38 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 94.32 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 94.28 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.25 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 94.2 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.13 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.08 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.08 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 94.07 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.0 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.95 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 93.84 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.81 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.8 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.59 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 93.56 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.54 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.47 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.45 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.33 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.27 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 93.22 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 93.21 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.21 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 93.15 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 93.14 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.11 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.03 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.99 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.98 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.92 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.86 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.8 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.79 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.7 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.69 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 92.51 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 92.51 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.51 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 92.49 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.49 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.46 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 92.14 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 92.11 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 92.03 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.92 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 91.91 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 91.87 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 91.85 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.83 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.83 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.81 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 91.72 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 91.71 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 91.69 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 91.65 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 91.53 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.52 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.51 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.47 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 91.45 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 91.43 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 91.32 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 91.21 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.2 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 91.16 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 91.15 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.09 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 91.08 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 91.07 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 91.01 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 90.94 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 90.87 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 90.76 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 90.72 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.66 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.6 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 90.56 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 90.51 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 90.48 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 90.48 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 90.46 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.45 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.42 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.31 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 90.26 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 90.24 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 90.2 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.2 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.13 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 90.02 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.01 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.92 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.83 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.82 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.72 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.7 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 89.69 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.61 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 89.31 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 89.14 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 89.14 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 89.09 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 89.08 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.05 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 88.99 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 88.79 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 88.68 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.38 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.31 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 88.24 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 88.15 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 88.11 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.1 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 87.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.79 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 87.67 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.57 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.48 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 87.47 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 87.43 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 87.37 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 87.24 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 87.23 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 87.2 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.14 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 87.11 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.97 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.92 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 86.81 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 86.78 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 86.7 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.64 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 86.5 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 86.32 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 86.29 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.28 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 86.26 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 86.25 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.22 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 86.17 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 86.08 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.88 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 85.87 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 85.82 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 85.79 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 85.72 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 85.6 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 85.53 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 85.38 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 85.3 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.09 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 85.05 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 84.81 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 84.81 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 84.7 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 84.47 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 84.37 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 84.25 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 84.22 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 84.21 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 84.12 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 84.09 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 84.08 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 83.84 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 83.6 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 83.35 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 83.3 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 82.94 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 82.85 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 82.81 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 82.76 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 82.72 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 82.34 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 82.24 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 82.14 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 82.11 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 82.08 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 81.68 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 81.57 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 81.46 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 81.36 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 81.13 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 81.08 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 81.06 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 80.93 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 80.6 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 80.56 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.31 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 80.06 |
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.3e-34 Score=264.89 Aligned_cols=187 Identities=33% Similarity=0.506 Sum_probs=167.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|++|+++|..||++ ||+|++||.|+++++.|++|..|+.|+++.+.+.. ...+++.+++|..+++++||
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d 78 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence 8999999999999999999998 99999999999999999999999999999888765 55678999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhC---CCCcEEEEecCCCcchHHHH-HHHHHhcCC---CCceEEe
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS---KSDKIVVEKSTVPVKTAEAI-EKILTHNSK---GIKFQIL 153 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l---~~~~iVi~~STv~~gt~~~l-~~~l~~~~~---g~~~~v~ 153 (480)
++|+|||||...++ .+|.+.+.++.+.+...+ .++++|+++||++|||++.+ .+++++..+ +.+|+++
T Consensus 79 ~i~i~VpTP~~~~~-----~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~ 153 (202)
T d1mv8a2 79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG 153 (202)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred EEEEecCccccccc-----cccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccch
Confidence 99999999987754 789999999988877654 47889999999999999985 455655332 6789999
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
|+|||+.||+++.++.+++++|+|+. ++++.+.++++|+.+.
T Consensus 154 ~~PE~~~~G~a~~d~~~~~~iViG~~----~~~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELD 195 (202)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSS
T ss_pred hhhhhhcccchhhhhcCCCeEEEEeC----CHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987 5889999999999975
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.95 E-value=2.1e-28 Score=225.64 Aligned_cols=165 Identities=25% Similarity=0.361 Sum_probs=140.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||+|+++|..|+ + ||+|++||+|+++++.|++|..|+.|++++++++.. ..+++.+++...+..++|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L--QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK-QLSIKATLDSKAAYKEAEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCChhHHHHHHHHH-C--CCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh-hhhhhccchhhhhhhcccc
Confidence 89999999999999999886 5 899999999999999999999999999998887653 3457788888877899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
+++|||||.+.+ ....+++.+..+.+.+... .++.+|+.+||++||+++++.+.+.+ +.++|+|||+.+
T Consensus 77 i~v~vpt~~~~~----~~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~~~~~~~~------~~~~~~PE~i~~ 145 (196)
T d1dlja2 77 VIIATPTNYNSR----INYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQT------DRIIFSPEFLRE 145 (196)
T ss_dssp EEECCCCCEETT----TTEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHHTTC------SCEEECCCCCCT
T ss_pred ccccCCcccccc----CCCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeeeeeeccch------hhhccchhhcch
Confidence 999999997642 2356788888888877665 56788999999999999988665533 457899999999
Q ss_pred cccccccCCCCeEEEecCCC
Q 011641 162 GTAIQDLFNPDRVLIGGRET 181 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~ 181 (480)
|++++++.+|+++|+|+.+.
T Consensus 146 G~ai~d~~~p~riv~G~~~~ 165 (196)
T d1dlja2 146 SKALYDNLYPSRIIVSCEEN 165 (196)
T ss_dssp TSTTHHHHSCSCEEEECCTT
T ss_pred hhhHhhccCCCEEEEeCCHh
Confidence 99999999999999888643
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=4.9e-25 Score=178.75 Aligned_cols=96 Identities=22% Similarity=0.400 Sum_probs=90.7
Q ss_pred chhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC--CCCccCCCCccccchhHhHHHHHHHHHH
Q 011641 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG--PKFLNASVGFGGSCFQKDILNLVYICEC 286 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~--~~~~~pg~g~gG~cl~kD~~~l~~~a~~ 286 (480)
+++||++|++.|+|++++|+|+||++.+|+++|+|..+|.++++.++|++ ..|+.||+||||+|||||+.+|.+.+++
T Consensus 1 ie~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~pG~G~GG~ClpKD~~al~~~a~~ 80 (98)
T d1mv8a1 1 VEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQ 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCCcccCCccccchhHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999987 4578899999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhHHh
Q 011641 287 NGLPEVAEYWKQVIKINDYQ 306 (480)
Q Consensus 287 ~g~~~~~~~~~~~~~~N~~~ 306 (480)
.|++ .+++++++++|+.|
T Consensus 81 ~~~~--~~ll~~~~~~N~~q 98 (98)
T d1mv8a1 81 LDVE--HPMLGSLMRSNSNQ 98 (98)
T ss_dssp TTCC--CTTGGGHHHHHHHH
T ss_pred cCCC--hHHHHHHHHHHhCC
Confidence 9998 68999999999975
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=2.8e-25 Score=192.47 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=100.2
Q ss_pred HHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011641 313 RVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPM 392 (480)
Q Consensus 313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (480)
++.+.+ +.++++||+|||+||||||+|+|+||++.|++.|.++|++|.+|||+++......... ...+
T Consensus 3 ~~~~~i-~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~--~~~~--------- 70 (136)
T d1mv8a3 3 KAFDLI-TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANK--EYIE--------- 70 (136)
T ss_dssp HHHHHH-TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCH--HHHH---------
T ss_pred HHHHHH-HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhh--hhhh---------
Confidence 344434 3568899999999999999999999999999999999999999999987543211000 0000
Q ss_pred CcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEEEEecC
Q 011641 393 SPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 467 (480)
Q Consensus 393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
.........++.+++++++++|++|++|+|++|+++ ...+.++.+|||+||+++.. .+.+|.||||
T Consensus 71 ~~~~~~~~~~~~~~~e~i~~~D~ivi~t~h~~f~~l-----~~~~~~~~~I~D~~~~~~~~----~~~~~~gi~w 136 (136)
T d1mv8a3 71 SKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDL-----VNKTPSGKKLVDLVGFMPHT----TTAQAEGICW 136 (136)
T ss_dssp HTSHHHHTTBCSCHHHHHHHCSEEEECSCCGGGHHH-----HHSCCTTCEEEESSSCCSSS----CCSSEEESCC
T ss_pred hccccccceeehhhhhhhhhceEEEEEeCCHHHHHH-----HHHhcCCCEEEECCCCCChh----HhcccCcccC
Confidence 000011244678999999999999999999999864 33444455999999999864 4667999996
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.90 E-value=5.4e-24 Score=172.74 Aligned_cols=97 Identities=30% Similarity=0.471 Sum_probs=90.3
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCccccchhHhHHHHHHHHHHCCC
Q 011641 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gG~cl~kD~~~l~~~a~~~g~ 289 (480)
.+||++|++.|+|++++|+|+||+..+|+++|+|..+|+++++.++|++.+++.||+||||+|||||+.+|+ +.+.|+
T Consensus 2 ~eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~~~~pg~g~GG~ClpKD~~al~--~~~~~~ 79 (98)
T d1dlja1 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLL--ANYNNI 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHH--HHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCccccCCCCcccccCcccHHHHH--HHhcCC
Confidence 479999999999999999999999999999999999999999999999988999999999999999999996 456677
Q ss_pred ChhhHHHHHHHHHhHHhHHHH
Q 011641 290 PEVAEYWKQVIKINDYQKSRF 310 (480)
Q Consensus 290 ~~~~~~~~~~~~~N~~~~~~~ 310 (480)
+ .+++++++++|+.|++++
T Consensus 80 ~--~~ll~~~~~~N~~~~~~i 98 (98)
T d1dlja1 80 P--QTLIEAIVSSNNVRKSYI 98 (98)
T ss_dssp S--CSHHHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHhhhhhC
Confidence 7 579999999999998875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=4.5e-22 Score=177.05 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=125.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||||||+|+||.+||.+|+++ ||+|++||+++++++.+.+. .....+++++++++||+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d~ 59 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV 59 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHh-------------------hhhhcccHHHHHhCCCe
Confidence 8999999999999999999998 99999999999999988753 24667888999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ +.+.+.++++++|+++||+.|.+++++.+.+.+.+ +.++.+|..
T Consensus 60 ii~~v~~~--------------~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapv~ 121 (161)
T d1vpda2 60 IITMLPNS--------------PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG----VEMLDAPVS 121 (161)
T ss_dssp EEECCSSH--------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred EEEEcCCH--------------HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC----Cceeccccc
Confidence 99999865 2345555 56888899999999999999999999988887653 456788987
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
..+..+..+.. .+++||+ ++.+++++++|+.++
T Consensus 122 gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~il~~~~ 154 (161)
T d1vpda2 122 GGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMA 154 (161)
T ss_dssp SHHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHTTE
T ss_pred CChhHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhc
Confidence 76655544322 4788986 789999999999986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.83 E-value=1.7e-20 Score=166.89 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=123.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||||||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ......++.+++..+|
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d 59 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD 59 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTSCS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECchhhhhhhhhh-------------------hccccchhhhhccccC
Confidence 89999999999999999999998 99999999999999887753 2455678888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|++|||.+ ..+++++ ..+.+.+.++++|+++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 60 iii~~v~~~--------------~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~g----i~~~dapv 121 (162)
T d3cuma2 60 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV 121 (162)
T ss_dssp EEEECCSCH--------------HHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred eeeecccch--------------hhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCC----CcEEeccc
Confidence 999999853 2234444 34778889999999999999999999999888764 34567777
Q ss_pred cccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
...|..+..+.. .+++||+ ++++++++++++.++
T Consensus 122 ~Gg~~~a~~G~l---~~~~gG~-----~~~~~~~~~il~~~~ 155 (162)
T d3cuma2 122 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMG 155 (162)
T ss_dssp ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHE
T ss_pred ccCccccccCCe---EEEecCC-----HHHHHHHHHHHHHHc
Confidence 666655544322 4788986 789999999999986
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.80 E-value=1.1e-18 Score=155.34 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=120.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|.++ ||+|++||+++++++.+++... .-...++. +++++||+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~-----------------~~~~~~~~-~~~~~~Di 60 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----------------VDEAGQDL-SLLQTAKI 60 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----------------CSEEESCG-GGGTTCSE
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc-----------------cceeeeec-cccccccc
Confidence 8999999999999999999998 9999999999999888765311 01344554 46899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||. +.++++++++.+.++++++|++.+++...+.+.+.+.... ....+..++|+..++
T Consensus 61 Iilavp~---------------~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~---~~~~h~~~~~~~~g~ 122 (165)
T d2f1ka2 61 IFLCTPI---------------QLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSG---FIGGHPMAGTAAQGI 122 (165)
T ss_dssp EEECSCH---------------HHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTT---CEEEEECCCCSCSSG
T ss_pred ccccCcH---------------hhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhcc---cccceeeecccccch
Confidence 9999873 3568899999999999999998888766655554443322 112355677888778
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
..+..+++....+++.. ....+++..+.++++|+.++
T Consensus 123 ~~a~~~l~~~~~~il~~-~~~~~~~~~~~v~~l~~~lG 159 (165)
T d2f1ka2 123 DGAEENLFVNAPYVLTP-TEYTDPEQLACLRSVLEPLG 159 (165)
T ss_dssp GGCCTTTTTTCEEEEEE-CTTCCHHHHHHHHHHHGGGT
T ss_pred hhhcccccCCCeEEEEe-CCCCCHHHHHHHHHHHHHhC
Confidence 77777877666655532 22336889999999999986
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.78 E-value=1.7e-19 Score=148.98 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.++|+||||||||||+|+|+||++.|++.|.+.|++|.+|||++...+. .....+.
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~------------------------~~~~~~~ 70 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES------------------------EDQSVLV 70 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT------------------------TCCSEEC
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh------------------------ccCCEEE
Confidence 3589999999999999999999999999999999999999999975321 1245677
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
.+++++++++|++|+.+.|.+|.++. .. +.+|++|.+
T Consensus 71 ~~l~~~~~~sDiII~~~~~~~~~~~~---------~K---v~tr~if~~ 107 (108)
T d1dlja3 71 NDLENFKKQANIIVTNRYDNELQDVK---------NK---VYSRDIFGR 107 (108)
T ss_dssp CCHHHHHHHCSEEECSSCCGGGGGGG---------GG---EECCCCSSC
T ss_pred eCHHHHHhhCCEEEEcCCchHHHhcC---------cc---cCCCCCCCC
Confidence 89999999999999998999887642 12 358998864
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.78 E-value=4.8e-19 Score=161.23 Aligned_cols=167 Identities=18% Similarity=0.219 Sum_probs=128.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc-CCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||+|||+|.||+++|..|+++ ||+|++|+++++.++.+++ +.++.+.|+.. ...++++++|++++++++
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~------l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGA 78 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTC
T ss_pred eceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecHHHHHHHhhcccccccccccc------cccccccchhhhhccCCC
Confidence 46799999999999999999998 9999999999999999986 44555555542 235799999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-----CCCCcEEEEecC-CCcchHHHHHHHHHhcCCCCceEEe
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-----SKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-----l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
|+||+|||+. .++++++++.+. ++++..++..|. +.+++...+.+++.+..+...+.++
T Consensus 79 d~iiiavPs~---------------~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vl 143 (189)
T d1n1ea2 79 EIILFVIPTQ---------------FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVL 143 (189)
T ss_dssp SCEEECSCHH---------------HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEE
T ss_pred CEEEEcCcHH---------------HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEE
Confidence 9999999863 456777776553 345666666554 5677777777788765443457788
Q ss_pred eCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc
Q 011641 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW 198 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~ 198 (480)
.+|.+..+-.. ..|+.+++++. +.+..+.++++|+..
T Consensus 144 sGP~~A~Ev~~----~~pt~~viAs~----~~~~a~~i~~lfst~ 180 (189)
T d1n1ea2 144 AGPSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTG 180 (189)
T ss_dssp ESSCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCT
T ss_pred ecCCcHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCC
Confidence 99988765321 35667888887 588999999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.75 E-value=2.2e-18 Score=155.13 Aligned_cols=156 Identities=11% Similarity=0.171 Sum_probs=122.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe---cCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS---TDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~~ 78 (480)
.+|||||+|.||.+||.+|+++ ||+|++|||++++++.+.+..... ...... .++.+++..
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~ 66 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKG--------------TKVLGAHSLEEMVSKLKK 66 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTT--------------SSCEECSSHHHHHHHBCS
T ss_pred CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhcccc--------------ccccchhhhhhhhhhhcc
Confidence 5799999999999999999998 999999999999999987643211 011122 334456778
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|.+++|++.+ ..+.++.+++.+.++++++||+.||+.|.+++++.+.+.+.+ +.++.+|..
T Consensus 67 ~~~ii~~~~~~--------------~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g----~~~ldapvs 128 (176)
T d2pgda2 67 PRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG----ILFVGSGVS 128 (176)
T ss_dssp SCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred cceEEEecCch--------------HHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcC----Cceeccccc
Confidence 99999998853 356788899999999999999999999999999888887754 355678877
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
..+..+..+ . .+++||+ ++++++++++|+.++.
T Consensus 129 Gg~~~A~~G---~-~~~~gG~-----~~~~~~~~~il~~~~~ 161 (176)
T d2pgda2 129 GGEDGARYG---P-SLMPGGN-----KEAWPHIKAIFQGIAA 161 (176)
T ss_dssp SHHHHHHHC---C-EEEEEEC-----TTTHHHHHHHHHHHSC
T ss_pred cCcccccCC---c-EEEcCCC-----HHHHHHHHHHHHHHhc
Confidence 666555443 1 4778986 6789999999999864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.69 E-value=1.7e-16 Score=142.66 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=121.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH---hhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||||||+|.||.+||.+|+++ ||+|++||+++++.+.+.+....... ...+....+.++ .+..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAPF-----------AGNLKAFETMEAFAASLKK 68 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTSTT-----------GGGEEECSCHHHHHHHBCS
T ss_pred CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCcccc-----------ccchhhhhhhhHHHHhccc
Confidence 8999999999999999999998 99999999999999988653211100 012334444333 3457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcc
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
++.++++++.. ..+..++..+...+.+++++++.||+.+.+++++.+.+.+.. +.++.+|..
T Consensus 69 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~----~~~ldapv~ 130 (178)
T d1pgja2 69 PRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG----LRFLGMGIS 130 (178)
T ss_dssp SCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTT----CEEEEEEEE
T ss_pred ceEEEEeecCc--------------chhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcc----eeEeccccc
Confidence 88888887632 345677888999999999999999999999999888887653 456778877
Q ss_pred ccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 011641 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
..+..+..+. .+++||+ ++++++++++|+.++.
T Consensus 131 g~~~~a~~g~----~~mvgG~-----~~~~~~v~pil~~~~~ 163 (178)
T d1pgja2 131 GGEEGARKGP----AFFPGGT-----LSVWEEIRPIVEAAAA 163 (178)
T ss_dssp SHHHHHHHCC----EEEEEEC-----HHHHHHHHHHHHHHSC
T ss_pred CCcchhcCCc----EEEeeCC-----HHHHHHHHHHHHHHhc
Confidence 6654444332 4788986 7899999999999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.68 E-value=2.1e-15 Score=134.31 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=121.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH-hhccC
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSEA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (480)
|+||+|||+|.||.++|..|.+++...+|++||+|++..+.+++.... -..+++..+ ...++
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----------------~~~~~~~~~~~~~~~ 63 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----------------DEGTTSIAKVEDFSP 63 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----------------SEEESCGGGGGGTCC
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----------------hhhhhhhhhhhcccc
Confidence 678999999999999999999882235899999999998887653210 133344443 34589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|. +.+.++++++.++++++++|++.+++.....+.+.+.+.+... ..+-.+++|..
T Consensus 64 dlIila~p~---------------~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i--~~hPm~G~e~s 126 (171)
T d2g5ca2 64 DFVMLSSPV---------------RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFV--GGHPIAGTEKS 126 (171)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEE--CEEEECCCSCC
T ss_pred ccccccCCc---------------hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccccc--ccccccccccc
Confidence 999999873 2457788999999999999999888877777777666654310 11233455666
Q ss_pred cccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011641 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT 206 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~ 206 (480)
++..+..++++...+++ ++...++++..+.++++|+.++ .++..
T Consensus 127 G~~~a~~~Lf~g~~~il-~p~~~~~~~~~~~v~~~~~~lG--~~v~~ 170 (171)
T d2g5ca2 127 GVEYSLDNLYEGKKVIL-TPTKKTDKKRLKLVKRVWEDVG--GVVEY 170 (171)
T ss_dssp SGGGCCSSTTTTCEEEE-CCCSSSCHHHHHHHHHHHHHTT--CEEEE
T ss_pred cHHHHHHHhhCCCeEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEe
Confidence 66667777777666555 3344457889999999999985 45544
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=2.5e-16 Score=141.93 Aligned_cols=164 Identities=15% Similarity=0.240 Sum_probs=117.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC--CHHHHHHHHcCCC-CCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||+++|..|+++ |++|++|.| +++.++.+++++. +.+...+ ....+.+++|.++++++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~ 71 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLGVKL-------NGVEIFWPEQLEKCLEN 71 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCC-------CSEEEECGGGHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEecccHHHHHHHhhhhhhhhhcchh-------ccccccccccHHHHHhc
Confidence 8999999999999999999999 999999987 6777899987543 3222111 12346778999999999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC-CcchH-HHHHHHHHhcCC--CCceEEee
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV-PVKTA-EAIEKILTHNSK--GIKFQILS 154 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~-~~l~~~l~~~~~--g~~~~v~~ 154 (480)
+|+|++|||+. .++.+++++.++++++.+|+....+ +.++. ..+.+.+++... ...+.++.
T Consensus 72 ad~Ii~avps~---------------~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vls 136 (180)
T d1txga2 72 AEVVLLGVSTD---------------GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAIT 136 (180)
T ss_dssp CSEEEECSCGG---------------GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEE
T ss_pred cchhhcccchh---------------hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEc
Confidence 99999999852 3688999999999877665543332 22221 123445544332 23567889
Q ss_pred CCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhc
Q 011641 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAH 197 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~ 197 (480)
+|.+..+-.. ..|..+++++. +.+..+.++++|+.
T Consensus 137 GP~~A~Ei~~----~~pt~~vias~----~~~~a~~i~~~f~~ 171 (180)
T d1txga2 137 GPAIAREVAK----RMPTTVVFSSP----SESSANKMKEIFET 171 (180)
T ss_dssp SSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCB
T ss_pred CCccHHHHHc----CCCcEEEEEcC----CHHHHHHHHHHHCC
Confidence 9998775221 24667788887 57889999999986
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.63 E-value=5.2e-16 Score=139.53 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=112.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||+++|..|+++ ||+|++||+++++++.+++.+ ...+.++.+.. ......+++++++++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGT-----AHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEE-----ECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhh-----hhhhhhhhhhHhHhcCCC
Confidence 7999999999999999999998 999999999999999998643 33333332211 123467889999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCC-CCceEE----eeC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQI----LSN 155 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v----~~~ 155 (480)
+||+|+|++. ++++++++.+++.++++|+..++...+ ...+.+.+..... ...+.. .++
T Consensus 75 ~iii~v~~~~---------------~~~~~~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (184)
T d1bg6a2 75 VILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGG-ALEFRKILRENGAPEVTIGETSSMLFT 138 (184)
T ss_dssp EEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTTCCCCEEEEESSCSEE
T ss_pred EEEEEEchhH---------------HHHHHHHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHHhcCCCceEEEecCCcce
Confidence 9999998642 478899999999999988876555444 3445555554331 111111 122
Q ss_pred CccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhcc
Q 011641 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHW 198 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~ 198 (480)
+....+|......... ++.++..+...++++.+.++++|..+
T Consensus 139 ~~~~~~~~v~~~~~~~-~~~~a~~~~~~~~~~~~~l~~~~~~f 180 (184)
T d1bg6a2 139 CRSERPGQVTVNAIKG-AMDFACLPAAKAGWALEQIGSVLPQY 180 (184)
T ss_dssp EECSSTTEEEEEEECS-CEEEEEESGGGHHHHHHHHTTTCTTE
T ss_pred eeEecCCeeEEEeecC-CEEEEEecCCCCHHHHHHHHHhCcCe
Confidence 2344555432222112 23344443333556666666666543
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=7.7e-16 Score=135.41 Aligned_cols=147 Identities=17% Similarity=0.234 Sum_probs=113.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEE
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||||||+|.||.+||.+|.++ |+.| +|+++.++.+.+.+.. + ...... +.+.++|++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~--g~~~-~~~~~~~~~~~~~~~~-----------------~--~~~~~~-~~~~~~~~~ 58 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR--FPTL-VWNRTFEKALRHQEEF-----------------G--SEAVPL-ERVAEARVI 58 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT--SCEE-EECSSTHHHHHHHHHH-----------------C--CEECCG-GGGGGCSEE
T ss_pred eEEEEeHHHHHHHHHHHHHhC--CCEE-EEeCCHHHHHHHHHHc-----------------C--Cccccc-ccccceeEE
Confidence 899999999999999999987 8766 5677766665554310 1 122333 447789999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccccc
Q 011641 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEG 162 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
|+|+|.+ ..+.....++.+.+++++++++.||+.|.+++++.+.+++.+ +.++.+|....+-
T Consensus 59 i~~~~~~--------------~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~g----i~~ldapVsGg~~ 120 (156)
T d2cvza2 59 FTCLPTT--------------REVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG----VTYLDAPVSGGTS 120 (156)
T ss_dssp EECCSSH--------------HHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCEESHHH
T ss_pred Eecccch--------------hhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcC----CeEEeccccCchh
Confidence 9998853 346777889999999999999999999999999998888653 5677999887765
Q ss_pred ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 163 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
.+..+.+ .+++||+ +++++++++++. ++
T Consensus 121 ~A~~G~L---~~~vgG~-----~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 121 GAEAGTL---TVMLGGP-----EEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHTCE---EEEEESC-----HHHHHHHGGGCT-TE
T ss_pred hhccCCE---EEEEeCC-----HHHHHHHHHHHH-hc
Confidence 5554433 4788986 889999999884 54
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.54 E-value=2.7e-15 Score=131.23 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=85.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||||||+|.||.++|.+|+++ ||+|++||++++....+... ...+..++++++++||+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~di 59 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERAR-------------------TVGVTETSEEDVYSCPV 59 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHH-------------------HHTCEECCHHHHHTSSE
T ss_pred CEEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCchhHHHHHhhh-------------------cccccccHHHHHhhcCe
Confidence 8999999999999999999998 99999999887666554431 01123456788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||.+. ..+++.++.+.+ ++++++.||+.|.+.+++.+.+++. .++++|....+
T Consensus 60 Ii~~v~~~~---------------~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~~------~~~d~~v~g~~ 116 (152)
T d1i36a2 60 VISAVTPGV---------------ALGAARRAGRHV--RGIYVDINNISPETVRMASSLIEKG------GFVDAAIMGSV 116 (152)
T ss_dssp EEECSCGGG---------------HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSSS------EEEEEEECSCH
T ss_pred EEEEecCch---------------HHHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhcc------CCCcccccCCc
Confidence 999998421 244556666654 5788999999999999988777542 13456654433
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=2.8e-15 Score=139.97 Aligned_cols=168 Identities=18% Similarity=0.134 Sum_probs=124.0
Q ss_pred EEEECCCh--hHHHHHH------HHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhh-hcC----------
Q 011641 4 ICCIGAGY--VGGPTMA------VIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQ-CRG---------- 63 (480)
Q Consensus 4 I~VIGlG~--~G~~lA~------~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~-~~~---------- 63 (480)
+.++|.|. ||..++. +|++. |+.|++.|.|+++ ++++++|+.++++|++.+.+.+ ...
T Consensus 43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~--g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 43 SITYGAELLHLVPDVKEVIVSDPCFAEE--PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECGGGGSS--SEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeecHHhhhhchhhhhccchhhhhc--CCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 44566665 6666655 68888 9999999999877 5889999999999999887764 111
Q ss_pred ------CCEEEecCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 64 ------KNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 64 ------~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
.++++++|+.+++++||+||+|||.+. .+.+++++|.++++++++|++.||+++.++.++
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~--------------~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l 186 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGN--------------KQPDIIKKFADAIPEGAIVTHACTIPTTKFAKI 186 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCT--------------THHHHHHHHGGGSCTTCEEEECSSSCHHHHHHH
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHH--------------HHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHH
Confidence 236889999999999999999999652 247788999999999999999999999988888
Q ss_pred HHHHHhcCCCCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC
Q 011641 138 EKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP 200 (480)
Q Consensus 138 ~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~ 200 (480)
.+.+.+.+ ..| +..+|-. .|+.. ....++.++. +++.++++.++|+.+++
T Consensus 187 ~e~l~~kg--i~v-i~~hp~a-~pe~~-----g~~li~~~~a----seE~iekv~elles~Gk 236 (242)
T d2b0ja2 187 FKDLGRED--LNI-TSYHPGC-VPEMK-----GQVYIAEGYA----SEEAVNKLYEIGKIARG 236 (242)
T ss_dssp HHHTTCTT--SEE-EECBCSS-CTTTC-----CCEEEEESSS----CHHHHHHHHHHHHHHHS
T ss_pred HHhcccCC--CEE-ECCCccC-cCccc-----cceEEecCCC----CHHHHHHHHHHHHHHCC
Confidence 77665432 232 3444432 23221 1112333332 58999999999999874
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-13 Score=124.91 Aligned_cols=173 Identities=19% Similarity=0.229 Sum_probs=110.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC----------CCCcCCCh-HHHHhhhcCCCEEEe
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGL-DGVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l-~~~~~~~~~~~l~~t 69 (480)
+.||+|||+|.||..+|..++.+ |++|++||++++.++...+.. .....+.. ++.... ..++++.+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~i~~~ 80 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEK-TLSTIATS 80 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH-HHHTEEEE
T ss_pred eEEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHH-HHhhcccc
Confidence 36899999999999999999998 999999999998766543310 00000000 011111 11468999
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCC--
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSK-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~-- 146 (480)
+|..+++.+||+|+.|+|.. ++.-+++++++.+.+++++++... |++++. .+...+.....
T Consensus 81 ~d~~~a~~~ad~ViEav~E~-------------l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~---~la~~~~~p~r~i 144 (192)
T d1f0ya2 81 TDAASVVHSTDLVVEAIVEN-------------LKVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQDRFA 144 (192)
T ss_dssp SCHHHHTTSCSEEEECCCSC-------------HHHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGGGEE
T ss_pred chhHhhhcccceehhhcccc-------------hhHHHHHHHHHhhhcccCceeeccCcccccc---hhhhhccCHhHEE
Confidence 99999999999999999852 333478999999999999987533 334422 23222211111
Q ss_pred CCceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011641 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~ 208 (480)
|.+| |+|.+..+-- .|+ .+..+ ++++.+.+.++++.+++ .++.+.|
T Consensus 145 g~Hf---fnP~~~~~lV---------EIv-~g~~T--~~~~i~~~~~~~~~lgk-~pV~v~D 190 (192)
T d1f0ya2 145 GLHF---FNPVPVMKLV---------EVI-KTPMT--SQKTFESLVDFSKALGK-HPVSCKD 190 (192)
T ss_dssp EEEE---CSSTTTCCEE---------EEE-CCTTC--CHHHHHHHHHHHHHTTC-EEEEECS
T ss_pred eecc---ccccCcccEE---------EEc-CCCCC--CHHHHHHHHHHHHHcCC-EEEEeec
Confidence 1111 3554443311 244 44433 79999999999999874 5665543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.44 E-value=4.1e-13 Score=121.15 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=107.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC----------CCCCcCCChHHHHhhhcCCCEEEec
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|++||++++.++...+. ...+.+...+..+ .++..++
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-----~~i~~~~ 76 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVL-----NGIRPTL 76 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHH-----HHEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhh-----ceeeccc
Confidence 46899999999999999999998 99999999999876653321 0111111111111 3577888
Q ss_pred CHHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEe-cCCCcchHHHHHHHHHhcCC--C
Q 011641 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSK--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~--g 147 (480)
+.++ +.+||+||.|+|.. +..-.+++++|.+.+++++++... |++++. .+...+....+ |
T Consensus 77 ~~~~-~~~adlViEav~E~-------------l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~---~la~~~~~p~r~~g 139 (186)
T d1wdka3 77 SYGD-FGNVDLVVEAVVEN-------------PKVKQAVLAEVENHVREDAILASNTSTISIS---LLAKALKRPENFVG 139 (186)
T ss_dssp SSTT-GGGCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEE
T ss_pred cccc-ccccceeeeeecch-------------HHHHHHHHHHHHhhcCCCeeEEeccccccHH---HHHHhccCchheEe
Confidence 8765 89999999999853 233478999999999999987533 334432 22221111110 1
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~ 208 (480)
.+| |+|.+..+.- .|+ .+..+ ++++.+.+..+++.+++ .++.+.|
T Consensus 140 ~Hf---~nP~~~~~lV---------Eiv-~~~~T--~~~~~~~~~~~~~~lgk-~pv~v~d 184 (186)
T d1wdka3 140 MHF---FNPVHMMPLV---------EVI-RGEKS--SDLAVATTVAYAKKMGK-NPIVVND 184 (186)
T ss_dssp EEC---CSSTTTCCEE---------EEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEEEES
T ss_pred ecc---ccCcccCCeE---------EEC-CCCCC--CHHHHHHHHHHHHHcCC-EEEEEec
Confidence 111 3444433311 254 44433 78999999999999874 5565543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.43 E-value=4.1e-13 Score=117.00 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=98.3
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||+||| +|.||.+||.+|.++ ||+|++||++++. +.++.+.++
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~~--------------------------------~~~~~~~~~ 54 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWA--------------------------------VAESILANA 54 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGG--------------------------------GHHHHHTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc--CCCcEeccccccc--------------------------------ccchhhhhc
Confidence 57899999 999999999999998 9999999986532 113356889
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|++++|+|.. .+..++.++.+.++++++|++.||+.+...+.+.+.+.. . ++..+|-+.
T Consensus 55 ~~v~~~~~~~---------------~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~-----~-~v~~hP~~G 113 (152)
T d2pv7a2 55 DVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTG-----A-VLGLHPMFG 113 (152)
T ss_dssp SEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCSS-----E-EEEEEECSC
T ss_pred cccccccchh---------------hheeeeecccccccCCceEEEecccCHHHHHHHHHHccC-----C-EEEecccCC
Confidence 9999997732 246788899999999999999999987777666543322 2 244455443
Q ss_pred cccccccccCCCCeEEE-ecCCCcchHHHHHHHHHHHhccCCCCeEE
Q 011641 160 AEGTAIQDLFNPDRVLI-GGRETPEGQKAVKALKDVYAHWVPEDRIL 205 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vvi-G~~~~~~~~~~~e~~~~l~~~~~~~~~v~ 205 (480)
.+-... .....++. |+. ++..+++.++|+.++ .+++
T Consensus 114 p~~~~~---~g~~~v~~~g~~-----~~~~~~~~~ll~~~G--a~v~ 150 (152)
T d2pv7a2 114 ADIASM---AKQVVVRCDGRF-----PERYEWLLEQIQIWG--AKIY 150 (152)
T ss_dssp TTCSCC---TTCEEEEEEEEC-----GGGTHHHHHHHHHTT--CEEE
T ss_pred Cccccc---CCcEEEEecCCC-----HHHHHHHHHHHHHhC--CEEE
Confidence 321111 11112333 443 567899999999985 3554
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.43 E-value=2.9e-13 Score=118.12 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=95.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||||||+|.||.+++..|.++ |++|++|++++++.+.+.+. .++.++.+.++++++||+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~--~~~i~v~~r~~~~~~~l~~~------------------~g~~~~~~~~~~~~~~dv 60 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQ------------------LALPYAMSHQDLIDQVDL 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHH------------------HTCCBCSSHHHHHHTCSE
T ss_pred CEEEEEeccHHHHHHHHHHHhC--CCeEEEEcChHHhHHhhccc------------------cceeeechhhhhhhccce
Confidence 8999999999999999999988 89999999999999887642 124556788899999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+||+ |.. ++.+.+.++++++|+ |....=+...+.+.+.... .+ +-..|.-...
T Consensus 61 Iilavk-p~~------------------~~~vl~~l~~~~~ii--s~~agi~~~~l~~~l~~~~---~i-vr~mPN~~~~ 115 (152)
T d2ahra2 61 VILGIK-PQL------------------FETVLKPLHFKQPII--SMAAGISLQRLATFVGQDL---PL-LRIMPNMNAQ 115 (152)
T ss_dssp EEECSC-GGG------------------HHHHHTTSCCCSCEE--ECCTTCCHHHHHHHHCTTS---CE-EEEECCGGGG
T ss_pred eeeecc-hHh------------------HHHHhhhcccceeEe--cccccccHHHHHhhhcccc---cc-hhhccchhhh
Confidence 999996 321 233445667778776 3333234455666664321 12 1112321100
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
. ..+...+.++. ..+++..+.++++|+.++
T Consensus 116 ---v---~~g~~~~~~~~--~~~~~~~~~v~~l~~~~G 145 (152)
T d2ahra2 116 ---I---LQSSTALTGNA--LVSQELQARVRDLTDSFG 145 (152)
T ss_dssp ---G---TCEEEEEEECT--TCCHHHHHHHHHHHHTTE
T ss_pred ---c---CccceEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence 0 11112223332 225788999999999986
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.40 E-value=1.3e-12 Score=113.92 Aligned_cols=145 Identities=10% Similarity=0.192 Sum_probs=93.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+++..|.+++ +++|++||+++++.+.+++. .+++.+++.++ +.++|+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~------------------~~~~~~~~~~~-v~~~Di 60 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKE------------------LGVETSATLPE-LHSDDV 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCC-CCTTSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhh------------------ccccccccccc-ccccce
Confidence 89999999999999999998872 49999999999999988752 13566667655 788999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceE-EeeCCcccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ-ILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~-v~~~Pe~~~ 160 (480)
||+||+ |. .+.++++++ .+.+++|+ |+...-+.+.+++.+..... -+. +...|....
T Consensus 61 v~lavk-P~--------------~~~~v~~~l---~~~~~~vi--S~~ag~~~~~l~~~l~~~~~--iir~mpn~p~~~~ 118 (152)
T d1yqga2 61 LILAVK-PQ--------------DMEAACKNI---RTNGALVL--SVAAGLSVGTLSRYLGGTRR--IVRVMPNTPGKIG 118 (152)
T ss_dssp EEECSC-HH--------------HHHHHHTTC---CCTTCEEE--ECCTTCCHHHHHHHTTSCCC--EEEEECCGGGGGT
T ss_pred EEEecC-HH--------------HHHHhHHHH---hhcccEEe--ecccCCCHHHHHHHhCcCcc--eEeecccchhHhc
Confidence 999997 41 234444443 23456665 44444445666666543211 011 112333222
Q ss_pred ccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
.|. ..+..+. ..+++..+.++++|+.++
T Consensus 119 ~g~---------t~~~~~~--~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 119 LGV---------SGMYAEA--EVSETDRRIADRIMKSVG 146 (152)
T ss_dssp CEE---------EEEECCT--TSCHHHHHHHHHHHHTTE
T ss_pred CCc---------EEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence 221 1222222 225778899999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=3.3e-12 Score=111.12 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=83.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcEEE
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|||+|+||.+||..|.++ ++.+.+|+|++++.+.+.+.. ... ..+.+++++.+|+||
T Consensus 2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R~~~~~~~l~~~~------------------~~~-~~~~~~~~~~~DiVi 60 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVY------------------GGK-AATLEKHPELNGVVF 60 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHT------------------CCC-CCSSCCCCC---CEE
T ss_pred EEEEeCcHHHHHHHHHHHhC--CCEEEEEeCChhhhcchhhcc------------------ccc-ccchhhhhccCcEEE
Confidence 79999999999999999765 555679999999999987621 111 234556789999999
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccccc
Q 011641 84 VSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGT 163 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~ 163 (480)
+|||.. .+.++++++ ..++++|+..|+..+-. . ++... ...++...+|....+.
T Consensus 61 l~v~d~---------------~i~~v~~~l---~~~~~ivi~~s~~~~~~--~----l~~~~-~~~~~~~~~~~~~~~~- 114 (153)
T d2i76a2 61 VIVPDR---------------YIKTVANHL---NLGDAVLVHCSGFLSSE--I----FKKSG-RASIHPNFSFSSLEKA- 114 (153)
T ss_dssp ECSCTT---------------THHHHHTTT---CCSSCCEEECCSSSCGG--G----GCSSS-EEEEEECSCC--CTTG-
T ss_pred Eeccch---------------hhhHHHhhh---cccceeeeecccchhhh--h----hhhhc-cccceeeeecccccch-
Confidence 999832 134444333 24688888877653321 1 12211 1123334444332221
Q ss_pred cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 164 AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 164 a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
...+... .++++++ +++.+.++++++.++
T Consensus 115 -~~~~~~~-~~~~~gd-----~~~~~~~~~l~~~lG 143 (153)
T d2i76a2 115 -LEMKDQI-VFGLEGD-----ERGLPIVKKIAEEIS 143 (153)
T ss_dssp -GGCGGGC-CEEECCC-----TTTHHHHHHHHHHHC
T ss_pred -hhhccCc-EEEEeCC-----HHHHHHHHHHHHHHC
Confidence 1112222 2566765 568899999999997
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.9e-11 Score=107.18 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=94.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||+.+|..|++. ||+|++++|++++.+.++...... .. .......+..+.+..+|+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~D~ 66 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVETDG-----SI-------FNESLTANDPDFLATSDL 66 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECTTS-----CE-------EEEEEEESCHHHHHTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhccccCCc-----cc-------cccccccchhhhhcccce
Confidence 9999999999999999999998 999999999887554433211000 00 011233333455899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCccccc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||++ .++++++.+.+.+.++++|+... ...+..+.+++. ... .-..+.+......+
T Consensus 67 iii~vka~---------------~~~~~~~~l~~~~~~~~~Iv~~q-NG~~~~~~l~~~---~~~-v~~g~~~~~~~~~~ 126 (167)
T d1ks9a2 67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIH-NGMGTIEELQNI---QQP-LLMGTTTHAARRDG 126 (167)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEEC-SSSCTTGGGTTC---CSC-EEEEEECCEEEEET
T ss_pred EEEeeccc---------------chHHHHHhhccccCcccEEeecc-CcccHHHHHhhc---CCc-EEEEEeeEeEEecC
Confidence 99999854 24788999999999888776543 334444433221 110 00111222222334
Q ss_pred cccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 011641 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~ 199 (480)
+...+.... .+.+|..+. ..+..+.+.++|+...
T Consensus 127 ~~i~~~~~g--~t~ig~~~~--~~~~~~~l~~~l~~a~ 160 (167)
T d1ks9a2 127 NVIIHVANG--ITHIGPARQ--QDGDYSYLADILQTVL 160 (167)
T ss_dssp TEEEEEECC--CEEEEESSG--GGTTCTHHHHHHHTTS
T ss_pred CEEEEeCCc--CEEEeeCCC--cchhHHHHHHHHHhhC
Confidence 443333222 244665422 1233566778887654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.89 E-value=2.1e-08 Score=85.84 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=74.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|++|.++|..|+.++...+|.++|+++++.+..... ++.... ........+.|+++ +++||+
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D--------l~~a~~-~~~~~~~~~~d~~~-~~~adi 75 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD--------LEDAQA-FTAPKKIYSGEYSD-CKDADL 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHGGGG-GSCCCEEEECCGGG-GTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH--------Hhcccc-ccCCceEeeccHHH-hccccE
Confidence 79999999999999999999873236999999999876543321 000000 11224566778875 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+++...|...+. .+.| .+.+++..+.|.++.+ +.+++. .|.|....-
T Consensus 76 vvitag~~~~~g~----~r~~l~~~N~~i~~~~~~~i~~~~p-~aiviv-vtNPvdv~t 128 (146)
T d1ez4a1 76 VVITAGAPQKPGE----SRLDLVNKNLNILSSIVKPVVDSGF-DGIFLV-AANPVDILT 128 (146)
T ss_dssp EEECCCC--------------CHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHH
T ss_pred EEEecccccCCCC----CHHHHHHHHHHHHHHHHHHHhhcCC-CcEEEE-eCCccHHHH
Confidence 9999988765421 1223 4456677777877655 555544 456766533
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.71 E-value=5.1e-08 Score=83.06 Aligned_cols=120 Identities=22% Similarity=0.219 Sum_probs=76.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHh-hhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..++.++...++.++|+++++.+..... +..... .....++..+++.+ ++++||
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d--------~~~~~~~~~~~~~i~~~~~~~-~~~dad 71 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD--------MYESGPVGLFDTKVTGSNDYA-DTANSD 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhh--------hhcccchhcccceEEecCCHH-HhcCCe
Confidence 89999999999999999999873236999999998876543211 000000 01123455667765 589999
Q ss_pred EEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|+++...|..... + +. +...+++..+.|.++.+ +.++++ -|.|..+.-.
T Consensus 72 vvvitag~~~~~g~---~-r~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvd~~~~ 126 (142)
T d1guza1 72 IVIITAGLPRKPGM---T-REDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIMTH 126 (142)
T ss_dssp EEEECCSCCCCTTC---C-HHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHHHH
T ss_pred EEEEEEecCCCCCC---c-hHHHHHHHHHHHHHHHHHhhccCC-CeEEEE-ecCChHHHHH
Confidence 99999876654311 1 11 22334555667777664 555544 4778776544
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=2e-07 Score=79.09 Aligned_cols=119 Identities=23% Similarity=0.300 Sum_probs=75.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.+|.++|..++.+....++.++|+++++++..... +.... .........+.+++ ++++||+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~D--------l~~~~-~~~~~~~~~~~~~~-~~~~adi 70 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALD--------LIHGT-PFTRRANIYAGDYA-DLKGSDV 70 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHG-GGSCCCEEEECCGG-GGTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcc--------ccccc-cccccccccCCcHH-HhcCCCE
Confidence 89999999999999999898773346899999999876643321 00000 01111223345554 5999999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|++|...|..... .+.| ...+++..+.|.++.+ +.++++ -|.|....-.
T Consensus 71 vvitag~~~~~g~----~r~dl~~~N~~I~~~i~~~i~~~~p-~aiviv-vtNPvd~~t~ 124 (140)
T d1a5za1 71 VIVAAGVPQKPGE----TRLQLLGRNARVMKEIARNVSKYAP-DSIVIV-VTNPVDVLTY 124 (140)
T ss_dssp EEECCCCCCCSSC----CHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEE-CSSSHHHHHH
T ss_pred EEEecccccCCCc----chhhhhccccchHHHHHHHHHhcCC-CcEEEE-eCCcHHHHHH
Confidence 9999887654411 1222 2235566677777665 455544 5778776433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.70 E-value=1.3e-07 Score=80.71 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=74.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|++|.++|..|+.++-..++.++|+++++.+..... +.+............+.|+++ +++||+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~D--------l~~a~~~~~~~~~~~~~d~~~-l~~adi 72 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID--------FQDAMANLEAHGNIVINDWAA-LADADV 72 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSSSCCEEEESCGGG-GTTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHh--------hhccccccCCccceeccCHHH-hccccE
Confidence 69999999999999999998872235899999999886543321 111111111122345667665 899999
Q ss_pred EEEeccCCCCCCC-CCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 82 VFVSVNTPTKTQG-LGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~-~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+++.+.|..... -+ ..+.| ...+++..+.|.++.+ +.+++. -|.|....-.
T Consensus 73 VVitaG~~~~~~~~~g-~~R~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvD~~t~ 130 (146)
T d1hyha1 73 VISTLGNIKLQQDNPT-GDRFAELKFTSSMVQSVGTNLKESGF-HGVLVV-ISNPVDVITA 130 (146)
T ss_dssp EEECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred EEEeccccccccccCC-ccHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEE-ecCcHHHHHH
Confidence 9999876542110 00 01233 3445666677776654 555443 4678766433
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.70 E-value=1.5e-07 Score=80.72 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=76.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+|||+|.||.++|..++.++-..++.++|+++++.+..... +..............+.+++ ++++||+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~d~~-~l~daDv 77 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD--------FNHGKVFAPKPVDIWHGDYD-DCRDADL 77 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHTTSSSSCCEEEECCGG-GTTTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc--------HhhCccccCCCeEEEECCHH-Hhcccee
Confidence 48999999999999999999873235899999999886543321 10000000111223455665 5999999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
|+++...|..... .+.| ...+++..+.|.++.++ .++++ -|.|....-.+
T Consensus 78 vvitag~~~~~~~----~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~iv-vtNPvd~~t~~ 132 (148)
T d1ldna1 78 VVICAGANQKPGE----TRLDLVDKNIAIFRSIVESVMASGFQ-GLFLV-ATNPVDILTYA 132 (148)
T ss_dssp EEECCSCCCCTTT----CSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEE-CSSSHHHHHHH
T ss_pred EEEecccccccCc----chhHHHHHHHHHHHHHHHHHHhhCCC-ceEEE-ecCccHHHHHH
Confidence 9999887765421 1233 44556667778777654 44443 36777764443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.69 E-value=6.5e-08 Score=82.40 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=75.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|++|.++|..|+.+. -.++.++|+++++.+......... ..+. ....+++.+.|+++ ++++|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~~~~~~~~~Dl~~~-----~~~~--~~~~~i~~~~d~~~-~~~adv 72 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVEGVPQGKALDLYEA-----SPIE--GFDVRVTGTNNYAD-TANSDV 72 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSSSHHHHHHHHHHTT-----HHHH--TCCCCEEEESCGGG-GTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-cceEEEEeeccccchhHHHHhhcc-----cccc--CCCCEEEecCcHHH-hcCCCE
Confidence 69999999999999999998872 248999999988765433210000 0000 01234677888876 899999
Q ss_pred EEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
|++|...|..... + +.| .+.+++..+.|.++.+ +.+++. .|.|..+.-.+
T Consensus 73 vvitag~~~~~~~---~-r~dl~~~N~~i~~~i~~~i~k~~p-~aiviv-vtNPvDv~t~~ 127 (142)
T d1uxja1 73 IVVTSGAPRKPGM---S-REDLIKVNADITRACISQAAPLSP-NAVIIM-VNNPLDAMTYL 127 (142)
T ss_dssp EEECCSCC-------------CHHHHHHHHHHHHHHHGGGCT-TCEEEE-CSSSHHHHHHH
T ss_pred EEEeeeccCCcCc---c-hhHHHhHHHHHHHHHHHHHhccCC-CceEEE-eCCchHHHHHH
Confidence 9999988765421 1 222 3445666677777655 444443 67887764443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.63 E-value=1.9e-07 Score=79.41 Aligned_cols=119 Identities=19% Similarity=0.220 Sum_probs=73.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..++.++.-.++.++|+++++.+..... +....... ...++..++|++ ++++||
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alD--------l~~~~~~~~~~~~i~~~~d~~-~~~~ad 71 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGADYS-LLKGSE 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH--------HHHHHHTTTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHH--------HhhhccccCCCCccccCCCHH-Hhcccc
Confidence 89999999999999999999772225899999999886542210 11111000 112466777876 599999
Q ss_pred EEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+|+++...|..... .+.| ...+++..+.+.++. ++.+++. -|.|....-
T Consensus 72 iVvitag~~~~~g~----~r~~l~~~n~~i~~~i~~~i~~~~-p~aiviv-vtNPvD~~t 125 (142)
T d1ojua1 72 IIVVTAGLARKPGM----TRLDLAHKNAGIIKDIAKKIVENA-PESKILV-VTNPMDVMT 125 (142)
T ss_dssp EEEECCCCCCCSSC----CHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEE-CSSSHHHHH
T ss_pred EEEEeccccCCCCC----chHHHHHHhhHHHHHHHHHHHhhC-CCcEEEE-ecCChHHHH
Confidence 99999887754421 1222 223334445555554 4555544 466766543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.61 E-value=3.8e-07 Score=78.54 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.+|.++|..++.+ + .+++++|+++++++..... +....... ....+..+++.++++++|
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~--~~~el~L~D~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA 77 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCceEEEEEeccccchhHHHH--------HhhhccccCCeeEEeccCchhhhhcCC
Confidence 6899999999999999988877 5 4899999998876654321 11111101 123466778888889999
Q ss_pred cEEEEeccCCCCCCCCC-CCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 80 DIVFVSVNTPTKTQGLG-AGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~-~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+|+++...|......+ ...+.| ...+++.++.+.++.+ +.++++ .|.|....-.
T Consensus 78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p-~aivii-vsNPvd~lt~ 138 (154)
T d1pzga1 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP-KTFIIV-VTNPLDCMVK 138 (154)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEE-CCSSHHHHHH
T ss_pred CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCC-CcEEEE-eCCcHHHHHH
Confidence 99999987664331000 001222 2345666677777665 454443 5678765433
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.61 E-value=6.5e-08 Score=81.42 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=75.3
Q ss_pred CchhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCccccchhHhHH
Q 011641 208 NLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDIL 278 (480)
Q Consensus 208 ~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gG~cl~kD~~ 278 (480)
+++++..+|+++|.+.++++..+.|...+|++.|+|+++++++++..+--++ +++ .+.++|....+.||+.
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999987653211 111 3457889999999999
Q ss_pred HHHHHHHHCCCChhhHHHHHH
Q 011641 279 NLVYICECNGLPEVAEYWKQV 299 (480)
Q Consensus 279 ~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+..+.|++.|++ .++.+.+
T Consensus 81 l~~~~a~~~~~~--~p~~~~~ 99 (133)
T d1vpda1 81 NALDTSHGVGAQ--LPLTAAV 99 (133)
T ss_dssp HHHHHHHHHTCC--CHHHHHH
T ss_pred HHHHHHHHcCCC--ChHHHHH
Confidence 999999999998 5555543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.61 E-value=2.2e-07 Score=78.98 Aligned_cols=120 Identities=23% Similarity=0.227 Sum_probs=76.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+|||+|.+|.++|..++.++...++.++|+++++.+..... +...........+..++++++ +++||+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D--------l~~a~~~~~~~~i~~~~~~~~-~~daDv 72 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD--------MQHGSSFYPTVSIDGSDDPEI-CRDADM 72 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HHHTGGGSTTCEEEEESCGGG-GTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH--------HHhccccCCCceeecCCCHHH-hhCCcE
Confidence 48999999999999999999873345899999999876542210 000000011234556777764 899999
Q ss_pred EEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+++...|..... + +. +.+.+++..++|.++.+ +.+++. -|.|....-.
T Consensus 73 VVitaG~~~~~g~---~-R~dl~~~N~~i~~~i~~~i~~~~p-~ai~iv-vtNPvDvmt~ 126 (143)
T d1llda1 73 VVITAGPRQKPGQ---S-RLELVGATVNILKAIMPNLVKVAP-NAIYML-ITNPVDIATH 126 (143)
T ss_dssp EEECCCCCCCTTC---C-HHHHHHHHHHHHHHHHHHHHHHCT-TSEEEE-CCSSHHHHHH
T ss_pred EEEecccccCCCC---c-hhhhhhhhHHHHHHHHHHHHhhCC-CeEEEE-eCCchHHHHH
Confidence 9999987754311 1 11 23445555667777655 444433 4677766444
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.51 E-value=7.6e-07 Score=76.94 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=73.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+|||+|.+|.++|..++.++.--++.++|+++++.+..... +..............+.++++ +++||+
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD--------l~h~~~~~~~~~~~~~~d~~~-~~~adi 91 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD--------LQHGSLFLQTPKIVADKDYSV-TANSKI 91 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH--------HHHTGGGCCCSEEEECSSGGG-GTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH--------HhccccccCCCeEEeccchhh-cccccE
Confidence 59999999999999999999882224899999998876543211 000000001122344566654 899999
Q ss_pred EEEeccCCCCCCCCCCCCCC----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 82 VFVSVNTPTKTQGLGAGKAA----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+++...|..... ++.. +...+++..++|.+..+ +.+++. -|.|....-.
T Consensus 92 VVitAg~~~~~g~---tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiiv-vtNPvDv~t~ 145 (160)
T d1i0za1 92 VVVTAGVRQQEGE---SRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIV-VSNPVDILTY 145 (160)
T ss_dssp EEECCSCCCCTTC---CGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEE-CSSSHHHHHH
T ss_pred EEEecCCccccCc---chHHHHHHHHHHHHHHHHHHHhcCC-CcEEEE-eCCchHHHHH
Confidence 9999887765421 2111 22345555667777655 444433 3567665433
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.49 E-value=3.4e-07 Score=76.99 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=74.3
Q ss_pred chhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCC-------C-------CCCc--cCCCCccccc
Q 011641 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRI-------G-------PKFL--NASVGFGGSC 272 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~-------~-------~~~~--~pg~g~gG~c 272 (480)
.+++..+|+++|.+...++..+.|+..++++.|+|++.++++++..+.- + ..+. .+.+||....
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l 81 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL 81 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHH
Confidence 4678999999999999999999999999999999999999999875411 0 0111 3567789999
Q ss_pred hhHhHHHHHHHHHHCCCChhhHHHHHHH
Q 011641 273 FQKDILNLVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 273 l~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+.||+.+..+++++.|++ .++.+.+.
T Consensus 82 ~~KDl~l~~~~a~~~g~~--~p~~~~a~ 107 (134)
T d3cuma1 82 MAKDLGLAQEAAQASASS--TPMGSLAL 107 (134)
T ss_dssp HHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999999999999 56555444
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=2.9e-07 Score=77.22 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=73.0
Q ss_pred hhHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCC-------C-Cc--cCCCCccccchhHhHHH
Q 011641 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGP-------K-FL--NASVGFGGSCFQKDILN 279 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~-------~-~~--~pg~g~gG~cl~kD~~~ 279 (480)
+++..+|+++|.+...++..+.|...++++.|+|+.+++++++.++--++ . .. ...++|....+.||+.+
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~l 81 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGI 81 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHHH
Confidence 57899999999999999999999999999999999999999987642111 1 11 24467889999999999
Q ss_pred HHHHHHHCCCChhhHHHHHHH
Q 011641 280 LVYICECNGLPEVAEYWKQVI 300 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~ 300 (480)
..+.|++.|+| .++.+.+.
T Consensus 82 ~~~~a~~~g~~--~pl~~~~~ 100 (132)
T d2cvza1 82 AMGVLDGEKAP--SPLLRLAR 100 (132)
T ss_dssp HHHHHTTTCCC--CHHHHHHH
T ss_pred HHHHHHHcCCC--ChHHHHHH
Confidence 99999999998 45555433
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=7.2e-07 Score=78.16 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=55.0
Q ss_pred cEEEEECCChhHHHHHH--HHHHc--CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.+|.+++. .++.. .++.++.++|+|+++++..... +...... ...-+++.++|.++++
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~i~~~td~~eaL 74 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI 74 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH--------HHHHHHhcCCCeEEEEeCChhhcc
Confidence 89999999999987543 24322 1246999999999987754321 1111111 1123577889999999
Q ss_pred ccCcEEEEeccCC
Q 011641 77 SEADIVFVSVNTP 89 (480)
Q Consensus 77 ~~aDvVii~Vptp 89 (480)
++||+|++++..+
T Consensus 75 ~dad~Vv~~~~~g 87 (171)
T d1obba1 75 IDADFVINTAMVG 87 (171)
T ss_dssp TTCSEEEECCCTT
T ss_pred cCCCeEeeecccc
Confidence 9999999987543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=8e-07 Score=76.75 Aligned_cols=117 Identities=19% Similarity=0.251 Sum_probs=72.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH----cCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~----~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||+|||+|.+|.++|..|+.++...++.++|+++++.+... ...... .......+.|+++ ++
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~------------~~~~~~~~~d~~~-~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFL------------STPKIVFGKDYNV-SA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTC------------SCCEEEEESSGGG-GT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhc------------CCCeEEeccchhh-hc
Confidence 589999999999999999998733358999999988765332 111010 1122445667765 89
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCC----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAA----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++...|..... ++.. +...+++..+.|.+..+ +.+++. -|.|....-.
T Consensus 87 ~adivvitag~~~~~~~---~R~dll~~N~~i~~~i~~~i~~~~p-~~iviv-vtNPvDv~t~ 144 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQ---TRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIV-VTNPVDILTY 144 (159)
T ss_dssp TEEEEEECCSCCCCTTT---CSSCTTHHHHHHHHHHTTTHHHHST-TCEEEE-CSSSHHHHHH
T ss_pred cccEEEEecccccCCCC---CHHHHHHHHHHHHHHHHHHHhccCC-CeEEEE-eCCcHHHHHH
Confidence 99999999887765421 2111 22233334444444444 555543 3567665433
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.39 E-value=1.4e-06 Score=76.86 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=73.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+++. ++ ......++++.++.||+
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~--g~~v~~~d~~~~------~~-------------------~~~~~~~l~ell~~sDi 95 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK------EG-------------------PWRFTNSLEEALREARA 95 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC------CS-------------------SSCCBSCSHHHHTTCSE
T ss_pred ceEEEeccccccccceeeeecc--cccccccccccc------cc-------------------ceeeeechhhhhhccch
Confidence 5799999999999999999987 999999998642 11 11234577888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ +.....++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 96 v~~~~pl~~~t~-----~li~--------~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~ 145 (181)
T d1qp8a1 96 AVCALPLNKHTR-----GLVK--------YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER 145 (181)
T ss_dssp EEECCCCSTTTT-----TCBC--------HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred hhcccccccccc-----cccc--------cceeeeccccceEEeccccccccchhhhhhcccC
Confidence 999987432211 1222 4456778999999987643333345577777764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.36 E-value=1.2e-06 Score=74.32 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=66.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc---CCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS---DQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~---~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~ 77 (480)
.||+|||+|.+|.++|..++.+....++.++|+++++.+.... ...++. +..+. +.+++ +++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~-------------~~~~~~~~~~~-~~~ 67 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFM-------------GQMSLYAGDYS-DVK 67 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCT-------------TCEEEC--CGG-GGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccC-------------CCeeEeeCcHH-HhC
Confidence 5899999999999999999987333589999999876432221 111111 12233 34554 589
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++...+..... .+.| ...+++..+.+.++.+ +.++++ -|.|....-.
T Consensus 68 ~adivvitag~~~~~~~----~r~~l~~~N~~i~~~i~~~i~~~~p-~ai~iv-vtNPvdv~t~ 125 (142)
T d1y6ja1 68 DCDVIVVTAGANRKPGE----TRLDLAKKNVMIAKEVTQNIMKYYN-HGVILV-VSNPVDIITY 125 (142)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCC-SCEEEE-CSSSHHHHHH
T ss_pred CCceEEEecccccCcCc----chhHHhhHHHHHHHHHHHHhhccCC-CceEEE-ecChHHHHHH
Confidence 99999999776643311 1222 3344556666776665 444443 4778776443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.34 E-value=3.2e-06 Score=71.76 Aligned_cols=118 Identities=23% Similarity=0.345 Sum_probs=70.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhh-hcCCCEE--EecCHHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQ-CRGKNLF--FSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~--~t~d~~~a 75 (480)
|||+|||+ |.+|.++|..++.++.-.++.++|++++ +.+.+... +...... ....+++ .+.+++ +
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~d~~-~ 71 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLRED--------IYDALAGTRSDANIYVESDENLR-I 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHH--------HHHHHTTSCCCCEEEEEETTCGG-G
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccccc--------chhcccccccCCccccCCcchHH-H
Confidence 89999995 9999999999998721259999999863 33322210 0000000 0011222 233554 5
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHH
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+++||+|++|...|..... + +.| .+.+++..+.|.++.+ +.+++. |.|....-
T Consensus 72 l~~aDvVVitAG~~~~~g~---s-R~dl~~~Na~iv~~i~~~i~~~~~-~~iivV--tNPvD~mt 129 (145)
T d1hyea1 72 IDESDVVIITSGVPRKEGM---S-RMDLAKTNAKIVGKYAKKIAEICD-TKIFVI--TNPVDVMT 129 (145)
T ss_dssp GTTCSEEEECCSCCCCTTC---C-HHHHHHHHHHHHHHHHHHHHHHCC-CEEEEC--SSSHHHHH
T ss_pred hccceEEEEecccccCCCC---C-hhhhhhhhHHHHHHHHHHHhccCC-CeEEEE--cCchHHHH
Confidence 8999999999877764421 1 222 2335566677777754 455543 67876543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.32 E-value=2.5e-06 Score=72.83 Aligned_cols=123 Identities=18% Similarity=0.161 Sum_probs=75.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.+|.++|..++.+.- .++.++|+++++.+..... +...... .....+..+.++++ ++++|
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~v~~~~~~~~-~~~ad 73 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTYDD-LAGAD 73 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCGGG-GTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecc--------hhhhccccCCCcEEEecccccc-cCCCc
Confidence 699999999999999988887622 4899999998776554321 0000000 01223455566654 89999
Q ss_pred EEEEeccCCCCCCCCC-CCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 81 IVFVSVNTPTKTQGLG-AGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~-~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|++|...|......+ ...+.| ...+++..+.|.++.+ +.++++ -|.|....-.
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aiviv-vtNPvD~~t~ 133 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIV-VTNPVDVMVQ 133 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSSHHHHHH
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEE-ecCchHHHHH
Confidence 9999988665431100 001223 2345666667777765 555544 4678776433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.29 E-value=2.1e-06 Score=72.85 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=78.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|||+ |.+|.++|..|+.++---++.++|+++.+.+.+.-.+..... ........++..+++++||
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~aD 70 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA----------TVKGYLGPEQLPDCLKGCD 70 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSC----------EEEEEESGGGHHHHHTTCS
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhc----------CCCeEEcCCChHHHhCCCC
Confidence 38999995 999999999999872224799999998766554321111000 0001122345567789999
Q ss_pred EEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH-HHHHHHhcC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+++-..|..... .+. +.+.+++..+.|.++.+ +.+++. .|.|..+.-. +.+.+++.+
T Consensus 71 ivVitag~~~~~g~----sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiiv-vtNPvD~~t~~~~~~~kk~~ 135 (144)
T d1mlda1 71 VVVIPAGVPRKPGM----TRDDLFNTNATIVATLTAACAQHCP-DAMICI-ISNPVNSTIPITAEVFKKHG 135 (144)
T ss_dssp EEEECCSCCCCTTC----CGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCcCCCCCC----CcchHHHHHHHHHHHHHHHHHhcCC-CeEEEE-ecCchhhhHHHHHHHHHHhc
Confidence 99999887765421 122 34455666677777754 454443 4678776443 344555543
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.27 E-value=2.6e-06 Score=75.94 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=75.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+....-..-. .++...+++++.++.||+
T Consensus 50 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~--------------------~~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVERA--------------------LGLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHHHH--------------------HTCEECSSHHHHHHHCSE
T ss_pred ceEEEeccccccccceeeeecc--ccceeeccCcccccchhh--------------------hccccccchhhccccCCE
Confidence 4799999999999999999876 999999998533111000 124556788898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ +.....++++.++|+.|-...=..+.+.+.|++.
T Consensus 108 i~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 157 (193)
T d1mx3a1 108 VTLHCGLNEHNH-----HLIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 157 (193)
T ss_dssp EEECCCCCTTCT-----TSBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEeecccccch-----hhhh--------HHHHhccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence 999988432221 1222 3345678999999987654433455677777653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.21 E-value=7.1e-07 Score=78.52 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=38.7
Q ss_pred cEEEEE-CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCI-GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VI-GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||+|| |+|.||.++|..|+++ ||+|++|+|++++++.+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 899999 8999999999999999 9999999999999888775
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=1e-06 Score=73.53 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=52.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh-hccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aD 80 (480)
+++.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+.+....... +..+-...++++ +.+||
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~~~~~~~------------gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASYATHAVI------------ANATEENELLSLGIRNFE 66 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTTCSEEEE------------CCTTCTTHHHHHTGGGCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHhCCccee------------eecccchhhhccCCcccc
Confidence 4789999999999999999998 99999999999999998764321110 000000112232 67899
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
.+|++++.
T Consensus 67 ~vi~~~~~ 74 (134)
T d2hmva1 67 YVIVAIGA 74 (134)
T ss_dssp EEEECCCS
T ss_pred EEEEEcCc
Confidence 99999764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.17 E-value=6.1e-07 Score=78.25 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=53.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.|||+|.||.++|..|+++ ||+|+++|||.++++.+.+......... .........++.+...|+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHSTPIS----------LDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHHHHHHHHTTCTTEEEEE----------CCTTCHHHHHHHHTTSSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChHHHHHHHhccccccccc----------ccccchhhhHhhhhccce
Confidence 5899999999999999999998 9999999999999999987422110000 000011123445678899
Q ss_pred EEEecc
Q 011641 82 VFVSVN 87 (480)
Q Consensus 82 Vii~Vp 87 (480)
++.++|
T Consensus 71 ~i~~~~ 76 (182)
T d1e5qa1 71 VISLIP 76 (182)
T ss_dssp EEECSC
T ss_pred eEeecc
Confidence 988865
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=7.9e-06 Score=69.24 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=74.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEECCHHHHH---HHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVSRIN---AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~---~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+||| .|.+|.++|..|+.+ ..+.++.++|+++.... .++....... ...+..+++++ ++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~------------~~~~~~~~~~~-~~ 67 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVK------------IKGFSGEDATP-AL 67 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCE------------EEEECSSCCHH-HH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccC------------CcEEEcCCCcc-cc
Confidence 8999999 599999999888643 23579999999753211 1222111100 01111234554 58
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHH-HHHHHhc
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAI-EKILTHN 144 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l-~~~l~~~ 144 (480)
+++|+||++-..|..... .+.| ...+++..++|.++.++..+++ -|.|..+.-.+ .+.+...
T Consensus 68 ~~aDvvvitaG~~~k~g~----~R~dl~~~N~~i~~~v~~~i~~~~p~aiviv--vtNPvD~m~~~~~~v~~~~ 135 (145)
T d2cmda1 68 EGADVVLISAGVRRKPGM----DRSDLFNVNAGIVKNLVQQVAKTCPKACIGI--ITNPVNTTVAIAAEVLKKA 135 (145)
T ss_dssp TTCSEEEECCSCCCCTTC----CGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE--CSSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCccCCCCc----chhhHHHHHHHHHHHHHHHHHhhCCCcEEEE--ccCCchHHHHHHHHHHHHc
Confidence 999999999887755421 2333 3445666777777775544333 36787765443 4455543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.15 E-value=2.4e-06 Score=74.16 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=50.3
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc-cC
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~a 79 (480)
|||||||+|.+|.. ....+.+. ++.++.++|+++++.+.+.+... .....+|.++.++ +.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~ll~~~i 63 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRYR-----------------VSATCTDYRDVLQYGV 63 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHTT-----------------CCCCCSSTTGGGGGCC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhcc-----------------cccccccHHHhccccc
Confidence 89999999999976 45555554 57899999999999888875310 1122355566554 67
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 64 D~V~I~tp~~ 73 (167)
T d1xeaa1 64 DAVMIHAATD 73 (167)
T ss_dssp SEEEECSCGG
T ss_pred ceeccccccc
Confidence 9999998753
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.14 E-value=6.3e-06 Score=73.11 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=75.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|.+||+....-..... ..+....++++.++.||+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV 103 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred cceeeccccccchhhhhhhhcc--CceEEEEeecccccccccc-------------------ccccccCCHHHHHHhccc
Confidence 5899999999999999999876 8999999985322111111 124556788888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.....+ -.+ +.....++++.++|+.|-...=..+.+.+.|++.
T Consensus 104 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g 153 (188)
T d2naca1 104 VTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRDAVARALESG 153 (188)
T ss_dssp EEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred hhhcccccccchh-----hhH--------HHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCC
Confidence 9999885432211 222 3455778999999986543333345577777764
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=3.5e-06 Score=72.86 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=50.5
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||||||+|.+|.. ....+... ++++++ ++|+++++.+.+.+.. ++.+.++.++.+++.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-~~~~i~~v~d~~~~~~~~~~~~~------------------~~~~~~~~~~l~~~~ 62 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICESW------------------RIPYADSLSSLAASC 62 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHHH------------------TCCBCSSHHHHHTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEEechhHhhhhhhhcc------------------cccccccchhhhhhc
Confidence 79999999999986 45556553 477765 6899988877765420 123456777777899
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 63 D~V~I~tp~~ 72 (164)
T d1tlta1 63 DAVFVHSSTA 72 (164)
T ss_dssp SEEEECSCTT
T ss_pred ccccccccch
Confidence 9999998754
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.11 E-value=1.1e-05 Score=66.95 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=39.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~ 41 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASA 41 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhh
Confidence 8999999999999999999998 9999999999999998865
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.10 E-value=1.4e-05 Score=70.17 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=54.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||||||+|.||...+..+... ++++|+ ++|+++++.+.+.+... + ....++.+|+++.++ +
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~ll~~~~ 66 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN-Y-------------PESTKIHGSYESLLEDPE 66 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT-C-------------CTTCEEESSHHHHHHCTT
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhccc-c-------------ccceeecCcHHHhhhccc
Confidence 6999999999999999888764 477877 57999998877654210 0 123467788888764 6
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 67 iD~v~I~tp~~ 77 (184)
T d1ydwa1 67 IDALYVPLPTS 77 (184)
T ss_dssp CCEEEECCCGG
T ss_pred cceeeecccch
Confidence 79999997753
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.09 E-value=9e-06 Score=72.54 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=71.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+....... ..+ . ...++++.++.||+
T Consensus 44 k~vgIiG~G~IG~~va~~l~~f--g~~V~~~d~~~~~~~~-~~~--------------------~-~~~~l~~~l~~sDi 99 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPELE-KKG--------------------Y-YVDSLDDLYKQADV 99 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHH-HTT--------------------C-BCSCHHHHHHHCSE
T ss_pred CeEEEecccccchhHHHhHhhh--cccccccCcccccccc-cce--------------------e-eecccccccccccc
Confidence 5799999999999999999876 9999999976443221 111 1 12467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ ++....++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 100 i~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 149 (197)
T d1j4aa1 100 ISLHVPDVPANV-----HMIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 149 (197)
T ss_dssp EEECSCCCGGGT-----TCBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred ccccCCcccccc-----cccc--------HHHHhhhCCccEEEecCchhhhhhHHHHHHHhcc
Confidence 999988432211 1222 2334567889999986543332344566777653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=1.3e-05 Score=69.41 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=53.9
Q ss_pred cEEEEECCChhHHHHH--HHHHHcCCC---CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhh-cCCCEEEecCHHHh
Q 011641 2 VKICCIGAGYVGGPTM--AVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA--~~La~~~~G---~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
+||+|||+|.+|.+.+ ..+... +. .++.++|+|+++++....- ++...... ...++..++|..++
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~-~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~d~~ea 74 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHL-EEFPIRKLKLYDNDKERQDRIAGA--------CDVFIREKAPDIEFAATTDPEEA 74 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT-TTSCEEEEEEECSCHHHHHHHHHH--------HHHHHHHHCTTSEEEEESCHHHH
T ss_pred ceEEEECCChhhhHHHHHHHHhhh-hhcCCCEEEEEcCChhHHHHHHHH--------HHHHHHHhCCCcceEecCChhhc
Confidence 5899999999987744 333322 22 4899999999987743320 11111111 12357889999999
Q ss_pred hccCcEEEEeccCC
Q 011641 76 VSEADIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||++...+
T Consensus 75 l~~AD~Vvitag~~ 88 (167)
T d1u8xx1 75 FTDVDFVMAHIRVG 88 (167)
T ss_dssp HSSCSEEEECCCTT
T ss_pred cCCCCEEEECCCcC
Confidence 99999999998654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.08 E-value=8.8e-06 Score=72.28 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=74.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|.+||+.......... .......++++.++.||+
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEAS-------------------YQATFHDSLDSLLSVSQF 106 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHHHHCSE
T ss_pred cceEEeecccchHHHHHHHHhh--ccccccccccccccchhhc-------------------ccccccCCHHHHHhhCCe
Confidence 5799999999999999988876 9999999986432211111 012445678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.....+ -.+ +.....++++.++|+.|=...=..+.+.+.|++.
T Consensus 107 v~l~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g 156 (191)
T d1gdha1 107 FSLNAPSTPETRY-----FFN--------KATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 156 (191)
T ss_dssp EEECCCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEecCCCCchHhh-----eec--------HHHhhCcCCccEEEecCCccchhhHHHHHHHHcC
Confidence 9999875322211 222 3455678999999986643333345577777764
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.07 E-value=1.5e-05 Score=70.25 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=74.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++++|||+|.+|..+|..+..- |.+|++||+....-..... ..+. .++++.++.||+
T Consensus 45 k~vgiiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~~~~~--------------------~~~~-~~l~ell~~sDi 101 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQL--------------------GIEL-LSLDDLLARADF 101 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHHH--------------------TCEE-CCHHHHHHHCSE
T ss_pred eeeeeccccchhHHHHHHhhhc--cceEEeecCCCChhHHhhc--------------------Ccee-ccHHHHHhhCCE
Confidence 5799999999999999988765 8999999986544332221 1232 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.....+ -.+ +.....++++.++|+.|=...=..+.+.+.|++.
T Consensus 102 v~~~~Plt~~T~~-----lin--------~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~ 151 (184)
T d1ygya1 102 ISVHLPKTPETAG-----LID--------KEALAKTKPGVIIVNAARGGLVDEAALADAITGG 151 (184)
T ss_dssp EEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred EEEcCCCCchhhh-----hhh--------HHHHhhhCCCceEEEecchhhhhhHHHHHHHhcC
Confidence 9999884322211 222 3455778999999986644333345677777764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.02 E-value=1.2e-05 Score=69.22 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=55.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|-||..++..|..+ |. +++++.|+.++.+.+.+.. .......++..+.+.++|
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt~~ka~~l~~~~----------------~~~~~~~~~~~~~l~~~D 86 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL----------------GGEAVRFDELVDHLARSD 86 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH----------------TCEECCGGGHHHHHHTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCcHHHHHHHHHhh----------------hcccccchhHHHHhccCC
Confidence 5799999999999999999998 76 7999999999988877521 011112245666788999
Q ss_pred EEEEeccCCC
Q 011641 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||.|+++|.
T Consensus 87 ivi~atss~~ 96 (159)
T d1gpja2 87 VVVSATAAPH 96 (159)
T ss_dssp EEEECCSSSS
T ss_pred EEEEecCCCC
Confidence 9999987663
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=1.2e-05 Score=71.23 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=72.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. .......++++.++.||+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~---------~~--------------~~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL---------PL--------------GNATQVQHLSDLLNMSDV 99 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC---------CC--------------TTCEECSCHHHHHHHCSE
T ss_pred eEEEEeecccchhhhhhhcccc--cceEeeccccccc---------hh--------------hhhhhhhhHHHHHhhccc
Confidence 5899999999999999988876 9999999985320 00 112334578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.| ++..+.++++.++|+.|-.+.=..+.|.+.|++.
T Consensus 100 i~i~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~ 149 (188)
T d1sc6a1 100 VSLHVPENPSTK-----NMMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK 149 (188)
T ss_dssp EEECCCSSTTTT-----TCBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred eeecccCCcchh-----hhcc--------HHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence 999988432221 1223 3455678889999986644333445677777653
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=9.6e-06 Score=70.10 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=54.4
Q ss_pred cEEEEECCChhHHHHHHH-HHHc---CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAV-IALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~-La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.+|.+.+.. ++.. .+..++.++|+|+++.+....-. +... .....+..+++.+++++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~--------~~~~--~~~~~~~~t~~~~~~l~ 70 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFV--------KRLV--KDRFKVLISDTFEGAVV 70 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHH--------HHHH--TTSSEEEECSSHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHH--------Hhhh--ccCceEEEecCcccccC
Confidence 899999999999888743 3332 12358999999999876533200 0000 11234677888888999
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+||+|+++...+
T Consensus 71 ~aDvVVita~~~ 82 (162)
T d1up7a1 71 DAKYVIFQFRPG 82 (162)
T ss_dssp TCSEEEECCCTT
T ss_pred CCCEEEEecccC
Confidence 999999997654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.96 E-value=1.2e-05 Score=71.81 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=72.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. + ..... .++++.++.||+
T Consensus 46 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~------~~----~------------~~~~~-~~l~~l~~~~D~ 100 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMK------GD----H------------PDFDY-VSLEDLFKQSDV 100 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCS------SC----C------------TTCEE-CCHHHHHHHCSE
T ss_pred eeeeeeeccccccccccccccc--ceeeeccCCccch------hh----h------------cchhH-HHHHHHHHhccc
Confidence 5799999999999999999876 9999999985321 10 0 12233 467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.....+ -.| +.....++++.++|+.|-...=..+.+.+.|++.
T Consensus 101 v~~~~plt~~T~~-----li~--------~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g 150 (199)
T d1dxya1 101 IDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 150 (199)
T ss_dssp EEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred ceeeecccccccc-----ccc--------HHHhhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence 9999885432211 222 3344668899999986644333345566777653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.93 E-value=0.00011 Score=61.73 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=67.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCH--HHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-EecCHHHhhc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~ 77 (480)
.||+||| +|.+|.++|..++.+....++.++|++. +..+.... ++..... . ..+.+ .+.++++ ++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~--------Dl~~~~~-~-~~~~~i~~~~~~~-~~ 69 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA-Y-DSNTRVRQGGYED-TA 69 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT-T-TCCCEEEECCGGG-GT
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeec--------chhhccc-c-cCCceEeeCCHHH-hh
Confidence 4899999 6999999999999873334899999753 33221111 0100000 0 11222 3456655 89
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+|+++...|..... .+. +..-+++..++|.++.++ .+++. -|.|...
T Consensus 70 ~aDiVvitaG~~~~~g~----~R~dl~~~N~~I~~~i~~~i~~~~p~-~i~iv-vtNPvDv 124 (142)
T d1o6za1 70 GSDVVVITAGIPRQPGQ----TRIDLAGDNAPIMEDIQSSLDEHNDD-YISLT-TSNPVDL 124 (142)
T ss_dssp TCSEEEECCCCCCCTTC----CHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEE-CCSSHHH
T ss_pred hcCEEEEecccccccCC----chhhHHHHHHHHHHHHHHHHHhcCCC-ceEEE-ecChHHH
Confidence 99999999876654311 112 234455666677766654 44433 3667654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.92 E-value=1.7e-05 Score=67.82 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEE--CCHHHHHHHHcC--CCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVD--ISVSRINAWNSD--QLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D--~~~~~v~~l~~~--~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
|||+|||+ |.+|.++|..|+... .+ ....+++ .+.++.+.+... .... ........+++
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 73 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-----------PLLAGLEATDD 73 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-----------TTEEEEEEESC
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-----------ccccccccCCc
Confidence 69999996 999999999999751 01 1123333 344444433210 0000 00123566777
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
..++++++|+|+++-..|..+.. + +. ....+++..+.|.++.+++.+|+.- |.|....-.
T Consensus 74 ~~~~~~~advViitaG~~~~pg~---~-r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivv-sNPvDv~t~ 138 (154)
T d1y7ta1 74 PKVAFKDADYALLVGAAPRKAGM---E-RRDLLQVNGKIFTEQGRALAEVAKKDVKVLVV-GNPANTNAL 138 (154)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTC---C-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHH
T ss_pred hhhhcccccEEEeecCcCCCCCC---c-HHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEe-cCcHHHHHH
Confidence 77889999999999876654411 1 11 2455667777788887777766543 456655433
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=2.7e-05 Score=68.25 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=50.6
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|.. .+..+.+....++++ ++|+++++.+.+.+.. +.....+|+++.++
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------~~~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG 66 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc-----------------cccceeeeeecccccc
Confidence 47999999999986 466666541135666 6899999988776421 22356788888775
Q ss_pred cCcEEEEeccCC
Q 011641 78 EADIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 67 ~id~v~I~tp~~ 78 (181)
T d1zh8a1 67 LVDAVDLTLPVE 78 (181)
T ss_dssp CCSEEEECCCGG
T ss_pred ccceeecccccc
Confidence 579999997753
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.84 E-value=2.9e-05 Score=66.35 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=73.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEECCHH--HHHHHHc----CCCCCcCCChHHHHhhhcCCCEEEe
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVDISVS--RINAWNS----DQLPIYEPGLDGVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~--~v~~l~~----~~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|||+|||+ |.+|.++|..|+... .+ .++.++|+++. +.+.+.- ...+ .......+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~ 70 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP-------------LLKDVIAT 70 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT-------------TEEEEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccc-------------cccccccC
Confidence 79999995 999999999998641 01 25778887653 3333321 1000 01235667
Q ss_pred cCHHHhhccCcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++..++++++|+|+++-..|..... .+.|+ ..+++..+.|.++.+...+++. -|.|....-.
T Consensus 71 ~~~~~~~~~~dvVVitag~~~~~g~----sr~dll~~N~~i~k~~~~~i~k~a~~~~~iiv-vsNPvD~mt~ 137 (154)
T d5mdha1 71 DKEEIAFKDLDVAILVGSMPRRDGM----ERKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTNCL 137 (154)
T ss_dssp SCHHHHTTTCSEEEECCSCCCCTTC----CTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHHH
T ss_pred cccccccCCceEEEEecccCCCCCC----chhHHHHHhHHHHHHHHHHHHhhCCCceEEEE-ecCcHHHHHH
Confidence 7888889999999999877765421 13333 5556666777777776654443 3567655433
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=8.3e-05 Score=63.57 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=65.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++++|+|.|.+|..+|..+... |.+|+++|++|-+ +++...| +.. ...++++..+|
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~~dG--------------------~~v-~~~~~a~~~ad 81 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAAMEG--------------------YEV-TTMDEACQEGN 81 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT--------------------CEE-CCHHHHTTTCS
T ss_pred CEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhhcCc--------------------eEe-eehhhhhhhcc
Confidence 4799999999999999999988 9999999999954 3333332 333 35678899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
+++.|+.++. ..+ .+-.+.++++.++.+.+....
T Consensus 82 ivvtaTGn~~---------vI~--------~eh~~~MKdgaIL~N~Ghfd~ 115 (163)
T d1li4a1 82 IFVTTTGCID---------IIL--------GRHFEQMKDDAIVCNIGHFDV 115 (163)
T ss_dssp EEEECSSCSC---------SBC--------HHHHTTCCTTEEEEECSSSTT
T ss_pred EEEecCCCcc---------chh--------HHHHHhccCCeEEEEeccccc
Confidence 9999976532 122 223367888998887655543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.82 E-value=2.4e-05 Score=67.22 Aligned_cols=102 Identities=20% Similarity=0.292 Sum_probs=73.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEE-Ee---cCHHHhhc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FS---TDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t---~d~~~a~~ 77 (480)
.||.|||.|..|+.-++..... |-+|+++|+++++.+++.+.. . +.+. .. ..+++.++
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~------------~----~~~~~~~~~~~~l~~~~~ 94 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLF------------G----SRVELLYSNSAEIETAVA 94 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------G----GGSEEEECCHHHHHHHHH
T ss_pred cEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhh------------c----ccceeehhhhhhHHHhhc
Confidence 3899999999999988888777 999999999999998887521 0 0111 11 13456789
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+||-++--|-.. .|-+ +.+.+.+.++++.+||+.|.=..|.
T Consensus 95 ~aDivI~aalipG~~-------aP~l-----It~~mv~~Mk~GSVIVDvaidqGG~ 138 (168)
T d1pjca1 95 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGGC 138 (168)
T ss_dssp TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred cCcEEEEeeecCCcc-------cCee-----ecHHHHhhcCCCcEEEEeecCCCCc
Confidence 999999998765432 2321 3466778899999999876544343
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.79 E-value=1.4e-05 Score=69.57 Aligned_cols=65 Identities=20% Similarity=0.483 Sum_probs=47.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|+||..++..+... ++++++ ++|++++..+ ........+.++...+.|
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-~~~elvav~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~D 60 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATLDT----------------------KTPVFDVADVDKHADDVD 60 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCCSS----------------------SSCEEEGGGGGGTTTTCS
T ss_pred ceEEEECChHHHHHHHHHHHhC-CCcEEEEEEeccccccc----------------------ccccccchhhhhhccccc
Confidence 5799999999999999988875 578766 5677643210 013455666666678999
Q ss_pred EEEEeccCC
Q 011641 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|++|+|+.
T Consensus 61 ~Vvi~tp~~ 69 (170)
T d1f06a1 61 VLFLCMGSA 69 (170)
T ss_dssp EEEECSCTT
T ss_pred eEEEeCCCc
Confidence 999997754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=2e-05 Score=70.39 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=53.6
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||.|+| .|.+|..++..|.++ ||+|++++|++++..........+.. +.+.-.+++.++++++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~~~~~~------------gD~~d~~~l~~al~~~ 68 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVV------------GDVLQAADVDKTVAGQ 68 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEEE------------SCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcChhhccccccccccccc------------ccccchhhHHHHhcCC
Confidence 68999999 699999999999998 99999999998875433222111111 1111123456678999
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+||.|+++.
T Consensus 69 d~vi~~~g~~ 78 (205)
T d1hdoa_ 69 DAVIVLLGTR 78 (205)
T ss_dssp SEEEECCCCT
T ss_pred CEEEEEeccC
Confidence 9999998754
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.75 E-value=0.00011 Score=63.64 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=50.3
Q ss_pred cEEEEECCChhHHH--HHHHHHHcC--CCCeEEEEECCHHH--HHHHHcCCCCCcCCChHHHHhh-hcCCCEEEecCHHH
Q 011641 2 VKICCIGAGYVGGP--TMAVIALKC--PSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~~--~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~ 74 (480)
|||+|||+|.+|.+ ++..+.... +.-++.++|+++++ .+.+..-. ...... -..-++..++|..+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~--------~~~~~~~~~~~~~~~~td~~~ 73 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--------KRMVEKAGVPIEIHLTLDRRR 73 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--------HHHHHHTTCCCEEEEESCHHH
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHH--------HHHHHhcCCCceeeecCCchh
Confidence 89999999977754 444444320 12389999998854 33332100 000100 01234678899888
Q ss_pred hhccCcEEEEeccCC
Q 011641 75 HVSEADIVFVSVNTP 89 (480)
Q Consensus 75 a~~~aDvVii~Vptp 89 (480)
++++||+|+++...+
T Consensus 74 al~gaDvVv~ta~~~ 88 (169)
T d1s6ya1 74 ALDGADFVTTQFRVG 88 (169)
T ss_dssp HHTTCSEEEECCCTT
T ss_pred hcCCCCEEEEccccC
Confidence 899999999998754
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.75 E-value=6.4e-05 Score=66.60 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=79.0
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-+..+++.|..-|++|.+|||....+.... .+
T Consensus 45 ~eL~gktvgIiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------------------~~ 91 (193)
T d1mx3a1 45 ARIRGETLGIIGLG----------RVGQAVALRAKAFGFNVLFYDPYLSDGVERA-----------------------LG 91 (193)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCTTHHHH-----------------------HT
T ss_pred eeeeCceEEEeccc----------cccccceeeeeccccceeeccCcccccchhh-----------------------hc
Confidence 46789999999984 4678999999999999999999987654321 13
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
+....++++.++.+|+|+++.+..+ -+. ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 92 ~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~-~~l~~mk~~a~lIN~sRG~ivde~aL~ 151 (193)
T d1mx3a1 92 LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND-FTVKQMRQGAFLVNTARGGLVDEKALA 151 (193)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH-HHHTTSCTTEEEEECSCTTSBCHHHHH
T ss_pred cccccchhhccccCCEEEEeecccccchhhhhH-HHHhccCCCCeEEecCCceEEcHHHHH
Confidence 5566789999999999999888643 223 444 55678988889999866 77875443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.61 E-value=8.5e-05 Score=63.64 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=78.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.. ....+++.|.++|++|.+||..-...+.... .....+.+
T Consensus 2 kIgiIGlG~----------MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~----------------------~~~~~~~~ 49 (161)
T d1vpda2 2 KVGFIGLGI----------MGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------------------AGAETAST 49 (161)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------------TTCEECSS
T ss_pred EEEEEehhH----------HHHHHHHHHHHCCCeEEEEeCCcchhHHHHH----------------------hhhhhccc
Confidence 799999965 8899999999999999999975443222221 23566789
Q ss_pred HHhhcccccEEEEEecCcc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 406 AYEATKDAHGVCILTEWDE-FKTLD--YQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~-~~~~~--~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
+.++++++|++++++..++ .++.- ...+...+++..+|+|+...... +.+++.|+.|..-
T Consensus 50 ~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (161)
T d1vpda2 50 AKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA 118 (161)
T ss_dssp HHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecc
Confidence 9999999999999986543 33321 12356666667799999997753 3455678888754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.60 E-value=0.00019 Score=62.38 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=74.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEECCHH--HHHHHHcC--CCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVDISVS--RINAWNSD--QLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~--~v~~l~~~--~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
.||+|+|+ |.+|.+++..|+... .| .++.++|+++. .++.+.-. .... +. ......+++
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~--~~---------~~~~~~~~~ 93 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY--PL---------LREVSIGID 93 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC--TT---------EEEEEEESC
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc--cc---------ccCcccccc
Confidence 37999996 999999999998741 12 26777887653 33332210 0000 00 124567888
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
..++++++|+||++-..|..... .+.| ...+++..+.|.++.+++.+|+.- |.|..+...
T Consensus 94 ~~~~~~~aDvVvi~ag~~rkpg~----tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv-~NPvd~~t~ 158 (175)
T d7mdha1 94 PYEVFEDVDWALLIGAKPRGPGM----ERAALLDINGQIFADQGKALNAVASKNVKVLVV-GNPCNTNAL 158 (175)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTC----CHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHH
T ss_pred chhhccCCceEEEeeccCCCCCC----cHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEe-cCcHHHHHH
Confidence 88889999999999877654411 1222 234566667777887777766543 457665444
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.55 E-value=8.4e-05 Score=67.25 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=50.6
Q ss_pred EEEEECCChhHHH-HHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--c
Q 011641 3 KICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
||||||+|.||.. +...+... ++.+|+ ++|+++++.+.+.+... ++ ...+...+|+++.++ +
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~-~~~~ivav~d~~~~~a~~~~~~~~------i~-------~~~~~~~~d~~ell~~~~ 100 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYG------VD-------PRKIYDYSNFDKIAKDPK 100 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTT------CC-------GGGEECSSSGGGGGGCTT
T ss_pred EEEEEcCcHHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhhc------cc-------cccccccCchhhhccccc
Confidence 7999999999974 55555543 477777 78999999887765310 00 012455677777664 5
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|+||+|..
T Consensus 101 iD~V~I~tp~~ 111 (221)
T d1h6da1 101 IDAVYIILPNS 111 (221)
T ss_dssp CCEEEECSCGG
T ss_pred ceeeeeccchh
Confidence 79999997753
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=6.3e-05 Score=58.31 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=46.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|+|+|..|.++|..|+++ |++|+++|.++. ..+.++. ...+.+....++.+.++
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 65 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGLDKLPE------------------AVERHTGSLNDEWLMAA 65 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTGGGSCT------------------TSCEEESBCCHHHHHHC
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhHHHHhh------------------ccceeecccchhhhccC
Confidence 4799999999999999999998 999999998543 1111111 01233333334457889
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+||++-.-|
T Consensus 66 d~vi~SPGi~ 75 (93)
T d2jfga1 66 DLIVASPGIA 75 (93)
T ss_dssp SEEEECTTSC
T ss_pred CEEEECCCCC
Confidence 9999874433
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.54 E-value=0.00032 Score=61.28 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=73.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-+..+++.|...|++|.+|||...+. ..
T Consensus 39 ~l~gk~vgIiG~G----------~IG~~va~~l~~~g~~v~~~d~~~~~~----------------------------~~ 80 (181)
T d1qp8a1 39 LIQGEKVAVLGLG----------EIGTRVGKILAALGAQVRGFSRTPKEG----------------------------PW 80 (181)
T ss_dssp CCTTCEEEEESCS----------THHHHHHHHHHHTTCEEEEECSSCCCS----------------------------SS
T ss_pred cccCceEEEeccc----------cccccceeeeecccccccccccccccc----------------------------ce
Confidence 4789999999984 478899999999999999999975421 11
Q ss_pred EEecCHHhhcccccEEEEEecC-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEW-DEFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~-~~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.+..++++.++.+|+|+++++- ++-++ ++ .+..+.|++.+++|++-+ ++|.+.+
T Consensus 81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~-~~~l~~mk~~ailIN~~RG~ivd~~aL 138 (181)
T d1qp8a1 81 RFTNSLEEALREARAAVCALPLNKHTRGLVK-YQHLALMAEDAVFVNVGRAEVLDRDGV 138 (181)
T ss_dssp CCBSCSHHHHTTCSEEEECCCCSTTTTTCBC-HHHHTTSCTTCEEEECSCGGGBCHHHH
T ss_pred eeeechhhhhhccchhhcccccccccccccc-cceeeeccccceEEeccccccccchhh
Confidence 2346789999999999998765 33344 45 456678898889999866 7886654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.52 E-value=0.00011 Score=63.78 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=71.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcC---CChHHHHhh-hcCCCE--EE----ecCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYE---PGLDGVVKQ-CRGKNL--FF----STDV 72 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e---~~l~~~~~~-~~~~~l--~~----t~d~ 72 (480)
||.|||+|..|+.-+...... |.+|+++|+++++.+++.+-...+-+ ......... -....+ .+ ...+
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l 108 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 108 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence 799999999999777666666 99999999999999998874322211 110000000 000000 00 0123
Q ss_pred HHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
.+.+++||+||.++-.|-.. .|-+ +.+.+.+.+++|.+||+.+.-..|.
T Consensus 109 ~~~l~~aDlVI~talipG~~-------aP~l-----it~~mv~~Mk~GSVIVDvaidqGGn 157 (183)
T d1l7da1 109 LKELVKTDIAITTALIPGKP-------APVL-----ITEEMVTKMKPGSVIIDLAVEAGGN 157 (183)
T ss_dssp HHHHTTCSEEEECCCCTTSC-------CCCC-----SCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HHHHHhhhhheeeeecCCcc-------ccee-----ehHHHHHhcCCCcEEEEEeecCCCc
Confidence 44578999999998766432 3322 3467778899999999866433343
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.50 E-value=0.00027 Score=62.31 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=78.9
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||.......... ..
T Consensus 43 ~~l~g~tvgIiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~----------------------~~ 90 (191)
T d1gdha1 43 EKLDNKTLGIYGFG----------SIGQALAKRAQGFDMDIDYFDTHRASSSDEAS----------------------YQ 90 (191)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH----------------------HT
T ss_pred ceecccceEEeecc----------cchHHHHHHHHhhccccccccccccccchhhc----------------------cc
Confidence 46678999999985 46789999999999999999998775433222 12
Q ss_pred eEEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~ 455 (480)
.....++++.++.+|+|+++.+.. +-++ ++ .+..+.|++.+++|.+-+ ++|.+.+
T Consensus 91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~-~~~l~~mk~~a~lIN~sRG~ivde~aL 149 (191)
T d1gdha1 91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN-KATIKSLPQGAIVVNTARGDLVDNELV 149 (191)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCCTTTTTCBS-HHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred ccccCCHHHHHhhCCeEEecCCCCchHhheec-HHHhhCcCCccEEEecCCccchhhHHH
Confidence 445678999999999999998883 3344 45 456678988889999876 8886654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.49 E-value=0.00015 Score=64.25 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=76.7
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|++ +-+..+++.|..-|++|.+|||.........
T Consensus 38 g~el~gk~vgIiG~G----------~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~------------------------ 83 (197)
T d1j4aa1 38 GREVRDQVVGVVGTG----------HIGQVFMQIMEGFGAKVITYDIFRNPELEKK------------------------ 83 (197)
T ss_dssp BCCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHHHHT------------------------
T ss_pred CccccCCeEEEeccc----------ccchhHHHhHhhhcccccccCcccccccccc------------------------
Confidence 456789999999984 4779999999999999999999987643221
Q ss_pred ceEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
.. ...++++.++.+|+|+++.+..+ -++ ++.+ ..+.|++.+++|.+.+ ++|.+.+.
T Consensus 84 ~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~-~l~~mk~~a~lIN~sRG~ivde~aL~ 143 (197)
T d1j4aa1 84 GY-YVDSLDDLYKQADVISLHVPDVPANVHMINDE-SIAKMKQDVVIVNVSRGPLVDTDAVI 143 (197)
T ss_dssp TC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH-HHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred ee-eeccccccccccccccccCCccccccccccHH-HHhhhCCccEEEecCchhhhhhHHHH
Confidence 11 24678999999999999877633 223 4544 4578888889999866 88876543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.47 E-value=0.0003 Score=59.99 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=54.5
Q ss_pred cEEEEECCChhHHH-HHHHHHHcCCCCeEEE-EECCHH--HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAV-VDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~-~D~~~~--~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||||||+|.+|.. +...|.. .+..+++. .+++++ ......+...+....+++.++. ++ ...
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~-~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~-----------~~--~~~ 70 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRN-AKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIK-----------LP--EFA 70 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH-CSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHH-----------SG--GGG
T ss_pred cEEEEEcCcHHHHHHHHHHHhh-CCcceEEEEEecchhccchhhhhhcCCcccccceeeeee-----------cc--ccc
Confidence 58999999999986 4555544 35667665 477754 2222333333333333333221 00 135
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.|+||+|+|...+ ... ......++.|..||+.|.
T Consensus 71 ~iDiVf~ATpag~h--------------~~~--~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 71 DIDFVFDATSASAH--------------VQN--EALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp GEEEEEECSCHHHH--------------HHH--HHHHHHHCTTCEEEECST
T ss_pred ccCEEEEcCCchhH--------------HHh--HHHHHHHHcCCEEEEccc
Confidence 78999999764211 111 122334577899998775
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.40 E-value=0.00015 Score=62.20 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=67.0
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.. ..-.+++.|.++|.+|.+||+.-...+...+.+ .+....+
T Consensus 2 kI~iIG~G~----------mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~---------------------~~~~~~~ 50 (165)
T d2f1ka2 2 KIGVVGLGL----------IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ---------------------LVDEAGQ 50 (165)
T ss_dssp EEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT---------------------SCSEEES
T ss_pred EEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh---------------------ccceeee
Confidence 799999865 667899999999999999999743322222211 1112234
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
..++++++|.|+++++...+.+ -++++...+.+..+|+|..++-
T Consensus 51 ~~~~~~~~DiIilavp~~~~~~-vl~~l~~~l~~~~iv~~~~s~~ 94 (165)
T d2f1ka2 51 DLSLLQTAKIIFLCTPIQLILP-TLEKLIPHLSPTAIVTDVASVK 94 (165)
T ss_dssp CGGGGTTCSEEEECSCHHHHHH-HHHHHGGGSCTTCEEEECCSCC
T ss_pred ecccccccccccccCcHhhhhh-hhhhhhhhcccccceeeccccc
Confidence 4578999999999998776654 3467777777777999998774
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.38 E-value=0.00049 Score=60.37 Aligned_cols=104 Identities=8% Similarity=0.115 Sum_probs=79.8
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-+..+++.|...|.+|.+|||...+....... .
T Consensus 40 ~~l~~~~vgiiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~----------------------~ 87 (188)
T d2naca1 40 YDLEAMHVGTVAAG----------RIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL----------------------N 87 (188)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH----------------------T
T ss_pred eeccccceeecccc----------ccchhhhhhhhccCceEEEEeeccccccccccc----------------------c
Confidence 46789999999974 467899999999999999999987665544332 2
Q ss_pred eEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
+....++++.++++|+|+++.+-.+ -++ ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 88 ~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~ivd~~aL~ 147 (188)
T d2naca1 88 LTWHATREDMYPVCDVVTLNCPLHPETEHMIND-ETLKLFKRGAYIVNTARGKLCDRDAVA 147 (188)
T ss_dssp CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH-HHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred ccccCCHHHHHHhccchhhcccccccchhhhHH-HHHHhCCCCCEEEecCchhhhhHHHHH
Confidence 4566789999999999999887744 222 555 45678888889999876 78876544
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.36 E-value=0.0005 Score=60.97 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=72.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.+|+|.|+|.+|..+|..|.+. |.+|+++|.+++++....... .+.. +.++.+ .+||
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~--Gakvvv~d~d~~~~~~~~~~g-------------------~~~~-~~~~~~~~~~D 85 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTERVAHAVALG-------------------HTAV-ALEDVLSTPCD 85 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT-------------------CEEC-CGGGGGGCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEecchHHHHHHHHhhc-------------------cccc-Cccccccccce
Confidence 4799999999999999999998 999999999999887765421 1222 234444 4899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+++-|-- .. ..+ .+.++. ++ -.+| .+....|-+.+...++|.+.+ +.+.|.++.
T Consensus 86 I~iPcA~-~~---------~I~----~~~a~~----i~-ak~i-~e~AN~p~~~~~~~~~L~~rg------I~~iPD~la 139 (201)
T d1c1da1 86 VFAPCAM-GG---------VIT----TEVART----LD-CSVV-AGAANNVIADEAASDILHARG------ILYAPDFVA 139 (201)
T ss_dssp EEEECSC-SC---------CBC----HHHHHH----CC-CSEE-CCSCTTCBCSHHHHHHHHHTT------CEECCHHHH
T ss_pred eeecccc-cc---------ccc----HHHHhh----hh-hhee-eccCCCCcchhhHHHHhcccc------eEEEehhhh
Confidence 8887632 11 222 222333 33 3444 455555556666667777754 467887753
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.35 E-value=0.00037 Score=59.55 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=78.2
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+++|+.. ....+++.|.++|++|.+||-.....+.... .+...+.
T Consensus 2 ~kIg~IGlG~----------MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~----------------------~~~~~~~ 49 (162)
T d3cuma2 2 KQIAFIGLGH----------MGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----------------------AGASAAR 49 (162)
T ss_dssp CEEEEECCST----------THHHHHHHHHHTTCEEEEECSSHHHHHHHHH----------------------TTCEECS
T ss_pred CEEEEEEEHH----------HHHHHHHHHHHCCCeEEEEECchhhhhhhhh----------------------hhccccc
Confidence 4799999954 7889999999999999999965433222111 2355677
Q ss_pred CHHhhcccccEEEEEecCcc-cccc--cHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEec
Q 011641 405 DAYEATKDAHGVCILTEWDE-FKTL--DYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~-~~~~--~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~iG 466 (480)
++.++++.+|.++++...+. .+++ ....+.....+..+|+|+..+... +.+++.|+.|...+
T Consensus 50 ~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dap 120 (162)
T d3cuma2 50 SARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP 120 (162)
T ss_dssp SHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred hhhhhccccCeeeecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecc
Confidence 89999999999999988764 2211 112244455556699999998753 45567799998754
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.33 E-value=0.00018 Score=63.95 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=75.4
Q ss_pred cCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 319 FNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-+..+++.|..-|++|.+|||....... .
T Consensus 40 ~~~l~~ktvgIiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------------------------~ 84 (199)
T d1dxya1 40 GKELGQQTVGVMGTG----------HIGQVAIKLFKGFGAKVIAYDPYPMKGDH-------------------------P 84 (199)
T ss_dssp CCCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSSCC-------------------------T
T ss_pred cccccceeeeeeecc----------cccccccccccccceeeeccCCccchhhh-------------------------c
Confidence 346788999999974 46789999999999999999997653211 1
Q ss_pred ceEEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
...+ .++++.++.+|.|+++++..+ =++ +|.+ ..+.|++.+++|.+-+ ++|.+.+-
T Consensus 85 ~~~~-~~l~~l~~~~D~v~~~~plt~~T~~li~~~-~l~~mk~~a~lIN~aRG~vvde~aL~ 144 (199)
T d1dxya1 85 DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEA-AFNLMKPGAIVINTARPNLIDTQAML 144 (199)
T ss_dssp TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHH-HHHHSCTTEEEEECSCTTSBCHHHHH
T ss_pred chhH-HHHHHHHHhcccceeeecccccccccccHH-HhhccCCceEEEecccHhhhhhHHHH
Confidence 2333 478999999999999988744 222 5554 5578888889999866 77866543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=0.00013 Score=63.43 Aligned_cols=75 Identities=16% Similarity=0.309 Sum_probs=46.1
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||||+| .||+|.-+...|+++ |.+++..+--+...-+.+ .+..............+.++..+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~~i------------~~~~p~~~~~~~~~~~~~~~~~~~~ 67 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKKL------------EEIFPSTLENSILSEFDPEKVSKNC 67 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSBH------------HHHCGGGCCCCBCBCCCHHHHHHHC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCCcc------------cccCchhhccccccccCHhHhcccc
Confidence 89999999 599999999999986 677877664332111111 1111110011111124556656789
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|++|+|+|.
T Consensus 68 dvvf~a~p~ 76 (176)
T d1vkna1 68 DVLFTALPA 76 (176)
T ss_dssp SEEEECCST
T ss_pred ceEEEcccc
Confidence 999999874
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.29 E-value=0.00025 Score=62.86 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=61.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcC----CCCeEEE-EECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKC----PSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~----~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|+||+|||.|.-|.+-|.+|.+.+ .|.+|++ ...+....+...+...... +.+ .-+.+|+
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~--------------~~~-v~~v~EA 108 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE--------------NGT-LGDMWET 108 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG--------------GTC-EEEHHHH
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC--------------CCc-ccCHHHH
Confidence 468999999999999999999951 1455544 3333222232222211100 011 1245778
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
++.+|+|++.+|.. .-.++.++|.++++++..+..
T Consensus 109 v~~ADiVmiLlPDe---------------~Q~~vy~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 109 ISGSDLVLLLISDS---------------AQADNYEKVFSHMKPNSILGL 143 (226)
T ss_dssp HHTCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEE
T ss_pred HhhCCEEEEecchH---------------HHHHHHHHHHHhcCCCceeee
Confidence 99999999998732 224567889999999998875
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.27 E-value=0.0011 Score=56.13 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=66.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|-|.+|...|..+... |.+|+++++||-+. ++..+ +++. .+.+++++.+|
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DPi~alqA~md--------------------Gf~v-~~~~~a~~~aD 80 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVME--------------------GFNV-VTLDEIVDKGD 80 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTT--------------------TCEE-CCHHHHTTTCS
T ss_pred CEEEEecccccchhHHHHHHhC--CCEEEEEecCchhhHHHHhc--------------------CCcc-CchhHccccCc
Confidence 4799999999999999999998 99999999999542 22222 2343 56788999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
++|.+++.+. -.+ ..-...++.+.||.+..-...
T Consensus 81 i~vTaTGn~~---------vI~--------~~h~~~MKdgaIl~N~GHfd~ 114 (163)
T d1v8ba1 81 FFITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFDD 114 (163)
T ss_dssp EEEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTTT
T ss_pred EEEEcCCCCc---------ccc--------HHHHHHhhCCeEEEeccccch
Confidence 9999976431 112 223366888998887655543
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.27 E-value=0.00057 Score=58.47 Aligned_cols=89 Identities=20% Similarity=0.155 Sum_probs=65.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|.-|.+-|.+|.+. |.+|++=-+... ..+...+ .+++. -+++|+++.+|
T Consensus 17 k~IaViGYGsQG~AhAlNLrDS--G~~V~VGLr~gs~s~~~A~~-------------------~Gf~v-~~~~eA~~~aD 74 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEA-------------------HGLKV-ADVKTAVAAAD 74 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHH-------------------TTCEE-ECHHHHHHTCS
T ss_pred CEEEEEeeCcHhHHHHhhhhhc--CCCEEEEcCCCCccHHHHhh-------------------hcccc-ccHHHHhhhcC
Confidence 5799999999999999999998 999887555322 2222222 12443 46788999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|++-+|.. . -.++. +.|.+++++++.+....
T Consensus 75 iim~L~PD~--------------~-q~~vy~~~I~p~lk~g~~L~FaH 107 (182)
T d1np3a2 75 VVMILTPDE--------------F-QGRLYKEEIEPNLKKGATLAFAH 107 (182)
T ss_dssp EEEECSCHH--------------H-HHHHHHHHTGGGCCTTCEEEESC
T ss_pred eeeeecchH--------------H-HHHHHHHhhhhhcCCCcEEEEec
Confidence 999998732 1 23455 47999999999887644
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.25 E-value=0.00059 Score=59.29 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=54.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|.||||.|.|.+|..++..+.++ ++.+|+++ |+++.. ...+.....+.+...-.. .......+....+..+...+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~g~~~~~~~~ 77 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSI--KKFEESGIPVAGTVEDLIKT 77 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGH--HHHHTTTCCCCCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-CCCEEEEEECCCCcHHHHHhcccCcceeccCccc--eeccccceecCCchhhhhhc
Confidence 78999999999999999999976 57887775 555432 222332222222211111 11122445666677777889
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+|+.|+|.
T Consensus 78 vDiViecTG~ 87 (178)
T d1b7go1 78 SDIVVDTTPN 87 (178)
T ss_dssp CSEEEECCST
T ss_pred CCEEEECCCC
Confidence 9999999774
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.23 E-value=0.00093 Score=58.33 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=77.7
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-+..+++.|..-|.+|.+|||+..++..... .
T Consensus 40 ~~l~~k~vgiiG~G----------~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~-----------------------~ 86 (184)
T d1ygya1 40 TEIFGKTVGVVGLG----------RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL-----------------------G 86 (184)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH-----------------------T
T ss_pred ccccceeeeecccc----------chhHHHHHHhhhccceEEeecCCCChhHHhhc-----------------------C
Confidence 35788999999974 46789999999999999999999887654321 2
Q ss_pred eEEecCHHhhcccccEEEEEecCc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
+. ..++++.++.+|+|+++.+.. +-++ ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 87 ~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~-~~l~~mk~~a~lIN~sRG~iVde~aL~ 145 (184)
T d1ygya1 87 IE-LLSLDDLLARADFISVHLPKTPETAGLIDK-EALAKTKPGVIIVNAARGGLVDEAALA 145 (184)
T ss_dssp CE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCH-HHHTTSCTTEEEEECSCTTSBCHHHHH
T ss_pred ce-eccHHHHHhhCCEEEEcCCCCchhhhhhhH-HHHhhhCCCceEEEecchhhhhhHHHH
Confidence 33 357899999999999998763 3333 454 55678888889999866 78876544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.19 E-value=0.00062 Score=58.76 Aligned_cols=110 Identities=15% Similarity=0.026 Sum_probs=73.8
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.+||+|+|.. +.+..++..|.++|++|.+||..-...+.....+....+. +............
T Consensus 1 sk~iaIiGaG----------~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 63 (184)
T d1bg6a2 1 SKTYAVLGLG----------NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEG-------PGLAGTAHPDLLT 63 (184)
T ss_dssp CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEES-------SSCCEEECCSEEE
T ss_pred CCEEEEECcc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhh-------hhhhhhhhhhhhh
Confidence 3699999985 4889999999999999999998644333222221000000 0111222334456
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
.++.++++++|.++++++.....+ -.+++...+.+..+|+...+...
T Consensus 64 ~~~~e~~~~aD~iii~v~~~~~~~-~~~~i~~~l~~~~~iv~~~g~~~ 110 (184)
T d1bg6a2 64 SDIGLAVKDADVILIVVPAIHHAS-IAANIASYISEGQLIILNPGATG 110 (184)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHH-HHHHHGGGCCTTCEEEESSCCSS
T ss_pred hhhHhHhcCCCEEEEEEchhHHHH-HHHHhhhccCCCCEEEEeCCCCc
Confidence 789999999999999987765543 34567777776678888877654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.19 E-value=0.0004 Score=60.44 Aligned_cols=31 Identities=19% Similarity=0.565 Sum_probs=27.3
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
||||+|+| .||+|.-+...|..+ |.+++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-PHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-CCCceEee
Confidence 89999999 799999999999987 67777654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.0012 Score=56.46 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=34.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |. +|+++|+++++++..++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHHHc--CCceEEeccCCHHHHHHHHH
Confidence 689999999999888777776 76 79999999999988776
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.15 E-value=0.00093 Score=60.70 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=48.6
Q ss_pred cEEEEECCChhH----HHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh
Q 011641 2 VKICCIGAGYVG----GPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G----~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||||||+|.+| ......+.+..++++++ ++|+++++.+.+.+... ....+..+++++.+
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~ 81 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---------------LKHATGFDSLESFA 81 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---------------CTTCEEESCHHHHH
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc---------------cccceeecchhhcc
Confidence 689999998744 44444454433467877 68999998877654210 01235567888876
Q ss_pred c--cCcEEEEeccCC
Q 011641 77 S--EADIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
. +.|+|++|+|+.
T Consensus 82 ~~~~iD~V~i~tp~~ 96 (237)
T d2nvwa1 82 QYKDIDMIVVSVKVP 96 (237)
T ss_dssp HCTTCSEEEECSCHH
T ss_pred cccccceeeccCCCc
Confidence 4 578999997753
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.07 E-value=0.00061 Score=65.28 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=72.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+=.+|.+||+++++.+++.+.... +++ -.+..++++++++++||+
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~--~~g----------~~v~~~~s~~eav~~ADI 196 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YSG----------LTIRRASSVAEAVKGVDI 196 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CTT----------CEEEECSSHHHHHTTCSE
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh--ccC----------CCceecCCHHHHHhcCCc
Confidence 46999999999999998887654446899999999988877642100 111 136778999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+.++... |=+. ...+++++.|...+.-.|+..
T Consensus 197 i~t~Tas~s~~--------Pv~~---------~~~l~pG~hI~aiGs~~p~~~ 232 (340)
T d1x7da_ 197 ITTVTADKAYA--------TIIT---------PDMLEPGMHLNAVGGDCPGKT 232 (340)
T ss_dssp EEECCCCSSEE--------EEEC---------GGGCCTTCEEEECSCCBTTBE
T ss_pred eeeccccCCCC--------cccc---------hhhcCCCCEEeecccchhhhh
Confidence 99998765321 1000 246788888865555555543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.07 E-value=0.0012 Score=62.90 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=68.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..|....+-.+|.+|++++++.+.+.+. + .. ..+....+.++++.+||+
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~-----------~-~~---~~~~~~~~~~~a~~~aDi 190 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY-----------C-ED---RGISASVQPAEEASRCDV 190 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH-----------H-HH---TTCCEEECCHHHHTSSSE
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHH-----------H-Hh---cCCccccchhhhhccccE
Confidence 46999999999999999988765556899999999998877641 0 00 123344455677899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcch
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++..- ..+ ...++++..|..-++..|+.
T Consensus 191 V~taT~s~~P--------~~~-----------~~~l~~G~hv~~iGs~~p~~ 223 (320)
T d1omoa_ 191 LVTTTPSRKP--------VVK-----------AEWVEEGTHINAIGADGPGK 223 (320)
T ss_dssp EEECCCCSSC--------CBC-----------GGGCCTTCEEEECSCCSTTC
T ss_pred EEEeccCccc--------ccc-----------hhhcCCCCeEeecCCccccc
Confidence 9999765321 111 24578899887655554443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.0012 Score=57.76 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=74.6
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+.. -+..+++.|...|.+|.+|||...... ...
T Consensus 41 ~l~~~~vgiiG~G~----------IG~~va~~l~~fg~~v~~~d~~~~~~~--------------------------~~~ 84 (188)
T d1sc6a1 41 EARGKKLGIIGYGH----------IGTQLGILAESLGMYVYFYDIENKLPL--------------------------GNA 84 (188)
T ss_dssp CSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCCCC--------------------------TTC
T ss_pred cccceEEEEeeccc----------chhhhhhhcccccceEeeccccccchh--------------------------hhh
Confidence 57899999999865 678999999999999999999754321 112
Q ss_pred EEecCHHhhcccccEEEEEecCcc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChhhhh
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE-FKT-LDYQRIYDNMQKPAFVFDGRN--VVDANKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~-~~~-~~~~~~~~~~~~~~~viD~~~--~~~~~~~~ 456 (480)
....++++.++.+|+|+++.+..+ -+. ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 85 ~~~~~l~ell~~sDii~i~~plt~~T~~li~~-~~l~~mk~~a~lIN~aRG~lvde~aL~ 143 (188)
T d1sc6a1 85 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA-KEISLMKPGSLLINASRGTVVDIPALA 143 (188)
T ss_dssp EECSCHHHHHHHCSEEEECCCSSTTTTTCBCH-HHHHHSCTTEEEEECSCSSSBCHHHHH
T ss_pred hhhhhHHHHHhhccceeecccCCcchhhhccH-HHHhhCCCCCEEEEcCcHHhhhhHHHH
Confidence 334689999999999999877643 333 454 55678888779999866 88876543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.03 E-value=0.00025 Score=57.31 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.||.|||.|++|.-+|..|++. |.+|+++++.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL--GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT--TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc--cccceeeehh
Confidence 4899999999999999999988 9999999985
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0019 Score=49.29 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=47.3
Q ss_pred cEEEEECCChhHH-HHHHHHHHcCCCCeEEEEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||=+||.|-+|. ++|..|.++ |+.|.|.|+.+ +..+.|++...+++. -.+.+ -+.++
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~~t~~L~~~Gi~i~~-----------------gh~~~-~i~~~ 61 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETERTAYLRKLGIPIFV-----------------PHSAD-NWYDP 61 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCCEES-----------------SCCTT-SCCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCChhHHHHHHCCCeEEe-----------------eeccc-ccCCC
Confidence 8999999999998 778888888 99999999986 455666654333321 11222 25788
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||.+-.
T Consensus 62 d~vV~SsA 69 (89)
T d1j6ua1 62 DLVIKTPA 69 (89)
T ss_dssp SEEEECTT
T ss_pred CEEEEecC
Confidence 98877733
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.90 E-value=0.0043 Score=52.75 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=35.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... |.+|+++|+++++.+..++
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence 689999999999887766666 8999999999999988775
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.87 E-value=0.0038 Score=48.17 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=44.9
Q ss_pred cEEEEECCChhH-HHHHHHHHHcCCCCeEEEEECCH-HHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVG-GPTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G-~~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||-|||.|-.| .++|..|.++ |++|.|+|... ...+.+.+.... +..-.+.+ -+.++
T Consensus 9 ~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~~Gi~-----------------v~~g~~~~-~i~~~ 68 (96)
T d1p3da1 9 QQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGAK-----------------IYIGHAEE-HIEGA 68 (96)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTCE-----------------EEESCCGG-GGTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHHCCCe-----------------EEECCccc-cCCCC
Confidence 689999999999 5568999998 99999999863 334444432111 22222333 36889
Q ss_pred cEEEEecc
Q 011641 80 DIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||++-.
T Consensus 69 d~vV~S~A 76 (96)
T d1p3da1 69 SVVVVSSA 76 (96)
T ss_dssp SEEEECTT
T ss_pred CEEEECCC
Confidence 99887744
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.83 E-value=0.0019 Score=55.64 Aligned_cols=118 Identities=11% Similarity=0.103 Sum_probs=78.6
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.++|+|+||.. ....+++.|.++|++|.+||..-+..+...+- +..+. ........
T Consensus 2 ~~nIg~IGlG~----------MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~---~~~~~-----------~~~~a~~~ 57 (176)
T d2pgda2 2 QADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---EAKGT-----------KVLGAHSL 57 (176)
T ss_dssp CBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---TTTTS-----------SCEECSSH
T ss_pred CCcEEEEeEhH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh---ccccc-----------cccchhhh
Confidence 46899999965 88999999999999999999765443222111 11110 00112234
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
.++.+++..+|.++++..+.+--.--.+.+...+++..+|||+...-.. +.+.+.|+.|..-
T Consensus 58 ~~~~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~lda 125 (176)
T d2pgda2 58 EEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS 125 (176)
T ss_dssp HHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhhhcccceEEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecc
Confidence 5667788899999998888652211245677777777799999887754 3444668888654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.74 E-value=0.0057 Score=51.79 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=76.1
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEEcCCCChH-HHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA-RLSIYDPQVTED-QIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.+++++|+|+|.. ..+..+++.|..+|+ +|.++..-.... .+...++
T Consensus 20 ~~l~~~~ilviGaG----------~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-------------------- 69 (159)
T d1gpja2 20 GSLHDKTVLVVGAG----------EMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-------------------- 69 (159)
T ss_dssp SCCTTCEEEEESCC----------HHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT--------------------
T ss_pred CCcccCeEEEECCC----------HHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh--------------------
Confidence 46899999999963 477899999999998 699999764432 2333332
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhc-----CCCCEEEEcC--CCCChhhhhhcCcEEEEe
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM-----QKPAFVFDGR--NVVDANKLREIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~-----~~~~~viD~~--~~~~~~~~~~~g~~y~~i 465 (480)
....-.+++.+++.++|+||.+|.-+++- ++.+.+...+ .+|.+|||.- +-+++.--.-.|+.++.|
T Consensus 70 ~~~~~~~~~~~~l~~~Divi~atss~~~i-i~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~l 143 (159)
T d1gpja2 70 GEAVRFDELVDHLARSDVVVSATAAPHPV-IHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTI 143 (159)
T ss_dssp CEECCGGGHHHHHHTCSEEEECCSSSSCC-BCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEH
T ss_pred cccccchhHHHHhccCCEEEEecCCCCcc-ccHhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeH
Confidence 01112357788999999999999877654 5555565544 3566999973 123333222345656544
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.71 E-value=0.00049 Score=57.72 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=42.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||||||+ ||+|.-+...|.++ .|..++..+.-+.. .|+ ++... ...+.......+...++
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~------~Gk-~i~~~----------~~~~~~~~~~~~~~~~~ 65 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------AGQ-RMGFA----------ESSLRVGDVDSFDFSSV 65 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------TTC-EEEET----------TEEEECEEGGGCCGGGC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc------CCc-ceeec----------cccchhccchhhhhccc
Confidence 89999995 99999999999864 35667777654322 121 11100 01122222122346789
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|++|.|+|.
T Consensus 66 d~vf~a~p~ 74 (144)
T d2hjsa1 66 GLAFFAAAA 74 (144)
T ss_dssp SEEEECSCH
T ss_pred eEEEecCCc
Confidence 999999773
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0032 Score=52.59 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=42.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHc--CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIGA-GYVGGPTMAVIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|.||||||+ |++|.-+-..|.++ .|-.+++.+..+... +..+..... .....-..+.. .+.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------g~~~~~~~~---------~~~~~~~~~~~-~~~ 64 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------QAAPSFGGT---------TGTLQDAFDLE-ALK 64 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------SBCCGGGTC---------CCBCEETTCHH-HHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------cccccccCC---------ceeeecccchh-hhh
Confidence 789999996 99999999766643 123467766654321 111110000 01112223433 478
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 65 ~~DivF~a~~~ 75 (146)
T d1t4ba1 65 ALDIIVTCQGG 75 (146)
T ss_dssp TCSEEEECSCH
T ss_pred cCcEEEEecCc
Confidence 99999999873
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.63 E-value=0.0014 Score=56.45 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=51.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEE-ECCHH-HHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~-~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|.||||-|.|.+|..+...+..+ +..+|+.+ |+++. ....+.....+.+....+... .....++....+..++..+
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~v~g~~~~~~~~ 78 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVK-LFEKAGIEVAGTVDDMLDE 78 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHH-HHHHTTCCCCEEHHHHHHT
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-CCceEEEEecCCcHHHHHHHHhcCCceEecccccce-eecccCcccCCChhHhhcC
Confidence 78999999999999999988776 35676654 55543 222332222232211111111 1111234444556667789
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+|+.|+|.
T Consensus 79 vDvViEcTG~ 88 (171)
T d1cf2o1 79 ADIVIDCTPE 88 (171)
T ss_dssp CSEEEECCST
T ss_pred CCEEEEccCC
Confidence 9999999664
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.59 E-value=0.0025 Score=54.89 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=33.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... |. +|++.|+++++.+..++
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTT--TCSCEEEECCCHHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcc--cccccccccchhhhHHHHHh
Confidence 589999999999776666655 75 79999999999887765
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0025 Score=54.54 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=52.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|..+.+++..|.+. |.+|++++|+.++.+.+.+.... .+.+...+..+.....+|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~~ka~~l~~~~~~--------------~~~~~~~~~~~~~~~~~dl 82 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQALSMDELEGHEFDL 82 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEECCSGGGTTCCCSE
T ss_pred CEEEEECCcHHHHHHHHHhccc--ceEEEeccchHHHHHHHHHHHhh--------------cccccccccccccccccce
Confidence 5799999999999999999998 88999999999999887752110 0223333322222467999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||-|+|..
T Consensus 83 iIN~Tp~G 90 (170)
T d1nyta1 83 IINATSSG 90 (170)
T ss_dssp EEECCSCG
T ss_pred eecccccC
Confidence 99997653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.47 E-value=0.00074 Score=61.71 Aligned_cols=32 Identities=13% Similarity=0.338 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||+|||.|.-|++.|..|+++ |++|++++.+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~--G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR--GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecC
Confidence 8999999999999999999998 9999999985
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.46 E-value=0.0068 Score=47.98 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..-|..|.+. |.+|++++...
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~ 45 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEA--GARLTVNALTF 45 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 4799999999999999999998 89999998754
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.46 E-value=0.01 Score=49.39 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=41.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHc--CCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALK--CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||||| .||+|.-+...|.++ .|..++..+.-+.. .|..+...... ....-..+. +..++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~------~gk~~~~~~~~---------~~~~~~~~~-~~~~~ 64 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI------GVPAPNFGKDA---------GMLHDAFDI-ESLKQ 64 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC------SSBCCCSSSCC---------CBCEETTCH-HHHTT
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc------cccccccCCcc---------eeeecccch-hhhcc
Confidence 8999999 699999999877653 12345555544321 12222111100 111222343 34789
Q ss_pred CcEEEEeccC
Q 011641 79 ADIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|++|.|+|.
T Consensus 65 ~DvvF~alp~ 74 (147)
T d1mb4a1 65 LDAVITCQGG 74 (147)
T ss_dssp CSEEEECSCH
T ss_pred ccEEEEecCc
Confidence 9999999874
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.45 E-value=0.0013 Score=59.04 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+||.|||.|..|++.|..|+++ |++|+++|++
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK--GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC--CCCEEEEeCC
Confidence 4799999999999999999998 9999999985
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.44 E-value=0.0038 Score=52.26 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=66.3
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.- ....+++.|.++|++|.+||..-........ .+.....+
T Consensus 2 kIgiIG~G~----------mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~ 49 (152)
T d1i36a2 2 RVGFIGFGE----------VAQTLASRLRSRGVEVVTSLEGRSPSTIERA----------------------RTVGVTET 49 (152)
T ss_dssp EEEEESCSH----------HHHHHHHHHHHTTCEEEECCTTCCHHHHHHH----------------------HHHTCEEC
T ss_pred EEEEEcHHH----------HHHHHHHHHHHCCCeEEEEcCchhHHHHHhh----------------------hccccccc
Confidence 799999854 8899999999999999999987665443321 12345678
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
+.|+++++|+|++++..+...+. ...+.... ...++|+..+-.
T Consensus 50 ~~e~~~~~diIi~~v~~~~~~~~-~~~~~~~~--~~~~id~st~~p 92 (152)
T d1i36a2 50 SEEDVYSCPVVISAVTPGVALGA-ARRAGRHV--RGIYVDINNISP 92 (152)
T ss_dssp CHHHHHTSSEEEECSCGGGHHHH-HHHHHTTC--CSEEEECSCCCH
T ss_pred HHHHHhhcCeEEEEecCchHHHH-HHhhcccC--CceeeccCcCCH
Confidence 89999999999999998765432 22233332 348999987764
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.40 E-value=0.00068 Score=58.35 Aligned_cols=67 Identities=12% Similarity=0.250 Sum_probs=39.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc--cC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~a 79 (480)
+||+|||+|.||...+..|.+......+.++|....+ . ... ..... ..++++.+. +.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~------~-~~~-------------~~~~~-~~~~~e~l~~~~i 66 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR------E-LGS-------------LDEVR-QISLEDALRSQEI 66 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS------C-CCE-------------ETTEE-BCCHHHHHHCSSE
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH------H-HHH-------------hhccC-cCCHHHHHhCCCc
Confidence 6899999999999988888753101234445443211 0 000 01222 346677664 67
Q ss_pred cEEEEeccCC
Q 011641 80 DIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 67 D~V~I~tp~~ 76 (172)
T d1lc0a1 67 DVAYICSESS 76 (172)
T ss_dssp EEEEECSCGG
T ss_pred chhhhccccc
Confidence 8999998754
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.005 Score=50.16 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEE
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV 31 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~ 31 (480)
|||+|+|+ |.||..++..+.+. |+++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~--~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK--GHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcC--CCeEEE
Confidence 89999995 99999999988877 888764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.0019 Score=55.47 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=52.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|+|+|.++.+++..|.+. +.+|++++|++++.+.+.+.. .. ...+......+.....+|+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~~~~a~~l~~~~------------~~--~~~~~~~~~~~~~~~~~di 82 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQAVSMDSIPLQTYDL 82 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEEEEGGGCCCSCCSE
T ss_pred CEEEEECCcHHHHHHHHHHccc--CceeeeccchHHHHHHHHHHH------------hh--ccccchhhhccccccccce
Confidence 4799999999999999999986 789999999999998876521 00 0223333222223578999
Q ss_pred EEEeccCC
Q 011641 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||=|+|..
T Consensus 83 iIN~tp~g 90 (171)
T d1p77a1 83 VINATSAG 90 (171)
T ss_dssp EEECCCC-
T ss_pred eeeccccc
Confidence 99997653
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.31 E-value=0.0011 Score=57.68 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=27.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+|||||| .||+|.-+.+.|+++ |.+++..+.-
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S 38 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTA 38 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEEC
T ss_pred cEEEEECcccHHHHHHHHHHHhC-CCceEEEEec
Confidence 6899999 699999999999987 7788876653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.0097 Score=51.12 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=33.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+.+++
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccchhheeccccc--cccccccccccccccccccc
Confidence 689999999999777666665 76 79999999999988775
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0028 Score=53.99 Aligned_cols=72 Identities=10% Similarity=0.171 Sum_probs=43.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. +++++. ++|+.... .+.+ .+.++... ..-.+.++.++++....+
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~~--~~g~--------d~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSS--LLGS--------DAGELAGA-GKTGVTVQSSLDAVKDDF 72 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCT--TCSC--------CTTCSSSS-SCCSCCEESCSTTTTTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccch--hccc--------hhhhhhcc-ccCCceeeccHHHHhccc
Confidence 79999995 99999999988775 366755 45543211 0000 00000000 012356778888878899
Q ss_pred cEEEEe
Q 011641 80 DIVFVS 85 (480)
Q Consensus 80 DvVii~ 85 (480)
|+||=.
T Consensus 73 DViIDF 78 (162)
T d1diha1 73 DVFIDF 78 (162)
T ss_dssp SEEEEC
T ss_pred ceEEEe
Confidence 988755
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.24 E-value=0.0057 Score=51.25 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=70.5
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
||+|+|.. ..+..|++.|.+.|.+|.+||+..+..+ +...+ ++.+..
T Consensus 2 kIg~IG~G----------~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~----------------------g~~~~~ 49 (152)
T d2ahra2 2 KIGIIGVG----------KMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------------------ALPYAM 49 (152)
T ss_dssp EEEEECCS----------HHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------------------TCCBCS
T ss_pred EEEEEecc----------HHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc----------------------ceeeec
Confidence 68999973 5788899999999999999998644322 22222 355667
Q ss_pred CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhh
Q 011641 405 DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~ 457 (480)
+..++++++|+|++++....+. ++.+.++...+|++.-.-+...++++
T Consensus 50 ~~~~~~~~~dvIilavkp~~~~-----~vl~~l~~~~~iis~~agi~~~~l~~ 97 (152)
T d2ahra2 50 SHQDLIDQVDLVILGIKPQLFE-----TVLKPLHFKQPIISMAAGISLQRLAT 97 (152)
T ss_dssp SHHHHHHTCSEEEECSCGGGHH-----HHHTTSCCCSCEEECCTTCCHHHHHH
T ss_pred hhhhhhhccceeeeecchHhHH-----HHhhhcccceeEecccccccHHHHHh
Confidence 8999999999999999865543 44555555568899888888777664
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.20 E-value=0.0016 Score=58.98 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+||+|||.|..|+.+|..|+++ |++|+++|++++
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~~ 38 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQ 38 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence 6999999999999999999998 999999998653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.15 E-value=0.0032 Score=53.83 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=49.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+|+|.+|.+++..|.+. |. ++++++|++++.+.|.+.. ......+.. ..++|
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~~~ka~~L~~~~------------------~~~~~~~~~--~~~~D 75 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY------------------GYAYINSLE--NQQAD 75 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH------------------TCEEESCCT--TCCCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEecccHHHHHHHHHhh------------------hhhhhhccc--ccchh
Confidence 4799999999999999999998 75 7999999999998886420 112222221 35789
Q ss_pred EEEEeccC
Q 011641 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||=|+|-
T Consensus 76 liINaTpi 83 (167)
T d1npya1 76 ILVNVTSI 83 (167)
T ss_dssp EEEECSST
T ss_pred hheecccc
Confidence 99999764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.01 Score=50.34 Aligned_cols=71 Identities=27% Similarity=0.402 Sum_probs=53.5
Q ss_pred cEEEEECCCh-hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+. +|.|+|..|.++ |..|+.++.. |.++.+-+++||
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~--gatVt~~h~~---------------------------------t~~l~~~~~~AD 82 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD 82 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred ceEEEEeccccccHHHHHHHHHh--hccccccccc---------------------------------cchhHHHHhhhh
Confidence 5799999765 999999999998 8999988652 123445578999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEec
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|..- . ...++++++||+..
T Consensus 83 ivI~a~G~p~~i---------~-----------~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 83 LLIVAVGKPGFI---------P-----------GDWIKEGAIVIDVG 109 (166)
T ss_dssp EEEECSCCTTCB---------C-----------TTTSCTTCEEEECC
T ss_pred HhhhhccCcccc---------c-----------ccccCCCcEEEecC
Confidence 999999876422 1 24578899988743
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.01 E-value=0.0035 Score=50.03 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|.|||.|++|+-+|..|++. |.+|+++++.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeeccc--ccEEEEEEecce
Confidence 4799999999999999999998 999999998653
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.044 Score=46.10 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=72.7
Q ss_pred HHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCC
Q 011641 311 VNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQ 390 (480)
Q Consensus 311 ~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
++-+.+..+..+.+++|+|+|... -...+++.|...|++|.+||+.-. ..++..
T Consensus 11 ~~~~~r~t~~~l~Gk~v~V~GyG~----------iG~g~A~~~rg~G~~V~v~e~dp~-~al~A~--------------- 64 (163)
T d1li4a1 11 IDGIKRATDVMIAGKVAVVAGYGD----------VGKGCAQALRGFGARVIITEIDPI-NALQAA--------------- 64 (163)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHH-HHHHHH---------------
T ss_pred HHHHHHHhCceecCCEEEEecccc----------ccHHHHHHHHhCCCeeEeeecccc-hhHHhh---------------
Confidence 344555566678999999999765 568899999999999999999532 223222
Q ss_pred CCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEc
Q 011641 391 PMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDG 446 (480)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~ 446 (480)
+++..+ .++++++..+|.+|.+|.-... ++.+.+ +.|+..+++...
T Consensus 65 ------~dG~~v-~~~~~a~~~adivvtaTGn~~v--I~~eh~-~~MKdgaIL~N~ 110 (163)
T d1li4a1 65 ------MEGYEV-TTMDEACQEGNIFVTTTGCIDI--ILGRHF-EQMKDDAIVCNI 110 (163)
T ss_dssp ------HTTCEE-CCHHHHTTTCSEEEECSSCSCS--BCHHHH-TTCCTTEEEEEC
T ss_pred ------cCceEe-eehhhhhhhccEEEecCCCccc--hhHHHH-HhccCCeEEEEe
Confidence 233443 4789999999999999986542 566665 678888666664
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.016 Score=49.26 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=54.5
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+ .+|.|+|..|+++ |..|+.++... .++.+-.+++|
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~--gatVt~~~~~t---------------------------------~~l~~~~~~aD 84 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSKT---------------------------------AHLDEEVNKGD 84 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTTC---------------------------------SSHHHHHTTCS
T ss_pred ceEEEEecCCccchHHHHHHHhc--cCceEEEeccc---------------------------------ccHHHHHhhcc
Confidence 479999975 5999999999998 89999988631 23344578999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++|.+++.|... . ...++++.+||+.++
T Consensus 85 ivi~a~G~~~~i---------~-----------~~~vk~g~iviDvgi 112 (170)
T d1a4ia1 85 ILVVATGQPEMV---------K-----------GEWIKPGAIVIDCGI 112 (170)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred chhhcccccccc---------c-----------cccccCCCeEeccCc
Confidence 999999876422 1 246788999987543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.98 E-value=0.0026 Score=54.98 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
.||+|||.|..|+..|..|+++ |+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL--GYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCc
Confidence 5899999999999999999998 88 5999998754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.98 E-value=0.0057 Score=52.50 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=50.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHH-HHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~-v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||||.|.|.+|..++..+..+ +..+|+. .|+++.. ...+.....+.+....+.... ....++....+..+...++
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 80 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPR-FEKEGFEVAGTLNDLLEKV 80 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHH-HHHHTCCCSCBHHHHHTTC
T ss_pred EEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCChHHHHHhhhcCceeecccccceee-ecccCccccchhhhhhccC
Confidence 6899999999999999988875 4677664 5665543 333333222332111111111 0111234445667777899
Q ss_pred cEEEEeccC
Q 011641 80 DIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|+.|+|.
T Consensus 81 DvViEcTG~ 89 (172)
T d2czca2 81 DIIVDATPG 89 (172)
T ss_dssp SEEEECCST
T ss_pred CEEEECCCC
Confidence 999999764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.97 E-value=0.011 Score=49.74 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=35.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|+..+..+... |.+|+++|+++++.+..++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence 3699999999999877666665 8999999999999988776
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.96 E-value=0.0063 Score=48.21 Aligned_cols=76 Identities=13% Similarity=0.011 Sum_probs=55.5
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|.+- -+..-++.|.+.|++|.+++|...++..... . ...+
T Consensus 9 ~l~~k~vlVvG~G~----------va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~-------------------~~~i 58 (113)
T d1pjqa1 9 QLRDRDCLIVGGGD----------VAERKARLLLEAGARLTVNALTFIPQFTVWA-N-------------------EGML 58 (113)
T ss_dssp CCBTCEEEEECCSH----------HHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-T-------------------TTSC
T ss_pred EeCCCEEEEECCCH----------HHHHHHHHHHHCCCeEEEEeccCChHHHHHH-h-------------------cCCc
Confidence 57899999999753 6789999999999999999999987653221 1 0112
Q ss_pred EEec--CHHhhcccccEEEEEecCcccc
Q 011641 401 SVVW--DAYEATKDAHGVCILTEWDEFK 426 (480)
Q Consensus 401 ~~~~--~~~~a~~~ad~vvi~t~~~~~~ 426 (480)
++.. -.++.+++++.++++|+.++..
T Consensus 59 ~~~~~~~~~~dl~~~~lv~~at~d~~~n 86 (113)
T d1pjqa1 59 TLVEGPFDETLLDSCWLAIAATDDDTVN 86 (113)
T ss_dssp EEEESSCCGGGGTTCSEEEECCSCHHHH
T ss_pred eeeccCCCHHHhCCCcEEeecCCCHHHH
Confidence 2221 1234588999999999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.88 E-value=0.015 Score=49.64 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=33.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |. .|++.|+++++.+..++
T Consensus 31 ~VlI~G~G~iG~~~~~~ak~~--g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 31 SFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp EEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCHHHhhhhhccccc--ccceeeeeccHHHHHHHHHH
Confidence 699999999999888877666 54 56788999999888765
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.84 E-value=0.0041 Score=54.16 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|||.|+.|..+|..|.+.+++.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 89999999999999999999876678999999764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0041 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+++|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhh--CcceeEEEecc
Confidence 4799999999999999999998 99999999864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0035 Score=54.24 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|..|+..|..|+++ ||+|++||.+++
T Consensus 44 k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 44 KNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSE 77 (179)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSS
T ss_pred cEEEEECccHHHHHHHHHHHhh--ccceEEEeccCc
Confidence 5899999999999999999998 999999999764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.82 E-value=0.014 Score=49.26 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=66.3
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA--RLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
++|+|+|+.. ..-.|++.|.+.|. +|.+||+.....+.....+. -+ ..
T Consensus 2 k~I~IIG~G~----------mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------------------~~-~~ 51 (171)
T d2g5ca2 2 QNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------------------ID-EG 51 (171)
T ss_dssp CEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------------------CS-EE
T ss_pred CEEEEEccCH----------HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------------------ch-hh
Confidence 3799999864 77889999999985 79999997554443332210 01 12
Q ss_pred ecCHH-hhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011641 403 VWDAY-EATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA 452 (480)
Q Consensus 403 ~~~~~-~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~ 452 (480)
.++.. ....++|+++++|+-+.+.+ -..++........+|+|..++-..
T Consensus 52 ~~~~~~~~~~~~dlIila~p~~~~~~-vl~~l~~~~~~~~ii~d~~s~k~~ 101 (171)
T d2g5ca2 52 TTSIAKVEDFSPDFVMLSSPVRTFRE-IAKKLSYILSEDATVTDQGSVKGK 101 (171)
T ss_dssp ESCGGGGGGTCCSEEEECSCHHHHHH-HHHHHHHHSCTTCEEEECCSCCTH
T ss_pred hhhhhhhhccccccccccCCchhhhh-hhhhhhccccccccccccccccHH
Confidence 23333 34457999999998776655 235677777777799999987653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.78 E-value=0.00079 Score=60.25 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA 30 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~ 30 (480)
|||+|||+|.+|++.|..|+++ |++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~--G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER--YHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--HTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCce
Confidence 8999999999999999999998 77643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.77 E-value=0.0028 Score=58.43 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=31.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|.|||+|..|+.+|..|+++ |++|+++|++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence 599999999999999999999 9999999998643
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.73 E-value=0.0054 Score=49.35 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|+|||.|++|.-+|..|++. |++|+++++.+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA--GVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcc--cceEEEEeeccc
Confidence 4799999999999999999998 999999998753
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.005 Score=49.07 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||.|||.|++|+-+|..|++. |++|+++++.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~--G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc--ccEEEEEeecc
Confidence 4799999999999999999998 99999999864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.013 Score=49.07 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=72.4
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+++|+. .....+++.|.+.|..|.++|..-.........+ ...+
T Consensus 2 kIg~IGlG----------~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 47 (156)
T d2cvza2 2 KVAFIGLG----------AMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG------------------------SEAV 47 (156)
T ss_dssp CEEEECCS----------TTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHC------------------------CEEC
T ss_pred eEEEEeHH----------HHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcC------------------------Cccc
Confidence 79999995 4889999999999999877776443333322211 1223
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
..+.+.++|.+++....++--..-...+.+.+.+..+++|+...-.. +.+++.|+.|..-
T Consensus 48 ~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~lda 113 (156)
T d2cvza2 48 PLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA 113 (156)
T ss_dssp CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred ccccccceeEEEecccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEec
Confidence 45667789999888777653222345677777778899999887653 3444668888655
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.67 E-value=0.0044 Score=54.61 Aligned_cols=73 Identities=8% Similarity=0.039 Sum_probs=49.6
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCe--EEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIE--VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~--V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|++|.|.| .|.+|..++..|.++ |++ |+...|++++.+.+..+...+ .- .+.-..+..++++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~--g~~v~v~~~~R~~~~~~~~~~~~~~~-~~------------d~~~~~~~~~~~~ 67 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG--SDKFVAKGLVRSAQGKEKIGGEADVF-IG------------DITDADSINPAFQ 67 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT--TTTCEEEEEESCHHHHHHTTCCTTEE-EC------------CTTSHHHHHHHHT
T ss_pred CCEEEEECCccHHHHHHHHHHHHC--CCcEEEEEEcCCHHHHHhccCCcEEE-Ee------------eeccccccccccc
Confidence 68999999 699999999999998 765 566778888877665432111 10 1101123345678
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|.|+.+...
T Consensus 68 ~~d~vi~~a~~ 78 (252)
T d2q46a1 68 GIDALVILTSA 78 (252)
T ss_dssp TCSEEEECCCC
T ss_pred cceeeEEEEee
Confidence 89999888653
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.65 E-value=0.0049 Score=58.34 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=31.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+||+|||+|.-|+.+|..|++.+.+++|++++++.+
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 5789999999999999999987633579999999753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.59 E-value=0.0043 Score=56.32 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+||+|||.|.-|+..|..|+++ |++|+++|.+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 6899999999999999999998 9999999975
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.58 E-value=0.0048 Score=55.92 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~ 37 (480)
|+|+|||.|..|+++|..|+++ | ++|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCCC
Confidence 7999999999999999999998 8 59999998653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.55 E-value=0.0044 Score=57.40 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||+|||.|..|++.|..|+++ |++|+++|.++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence 4899999999999999999999 99999999853
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.54 E-value=0.0058 Score=57.60 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+||+|||+|.-|++.|..|+++ |++|++++.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 37999999999999999999998 99999999853
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.54 E-value=0.0055 Score=49.26 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|+-+|..|++. |++|+++++++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc--cceEEEEeccc
Confidence 4799999999999999999998 99999999865
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.03 Score=46.43 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
.|-|+|.|.+|..++..|.+. |++|+++|.++++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~ 38 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR--GQNVTVISNLPED 38 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchh
Confidence 488999999999999999998 9999999999865
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.52 E-value=0.0052 Score=54.68 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|.-|++.|..|++++.|++|++||..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 589999999999999999987655899999998754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.52 E-value=0.016 Score=48.01 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=63.0
Q ss_pred CCCeEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 323 SNKKIAVLG-FAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
.-+||+|+| +.- ....+++.|.++|++|.+||.....
T Consensus 8 ~~~kI~iIGg~G~----------mG~~la~~L~~~G~~V~~~d~~~~~-------------------------------- 45 (152)
T d2pv7a2 8 DIHKIVIVGGYGK----------LGGLFARYLRASGYPISILDREDWA-------------------------------- 45 (152)
T ss_dssp TCCCEEEETTTSH----------HHHHHHHHHHTTTCCEEEECTTCGG--------------------------------
T ss_pred CCCeEEEEcCCCH----------HHHHHHHHHHHcCCCcEeccccccc--------------------------------
Confidence 446999999 754 7888999999999999999975432
Q ss_pred EecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCC
Q 011641 402 VVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVV 450 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~ 450 (480)
..++.++++|.+++.++=..... -..++...+++..+|+|.-.+-
T Consensus 46 ---~~~~~~~~~~~v~~~~~~~~~~~-v~~~~~~~~~~~~iiiD~~Svk 90 (152)
T d2pv7a2 46 ---VAESILANADVVIVSVPINLTLE-TIERLKPYLTENMLLADLTSVK 90 (152)
T ss_dssp ---GHHHHHTTCSEEEECSCGGGHHH-HHHHHGGGCCTTSEEEECCSCC
T ss_pred ---ccchhhhhccccccccchhhhee-eeecccccccCCceEEEecccC
Confidence 12455788999999988776554 3456677777778999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.50 E-value=0.0043 Score=56.56 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.|||.|.+|+++|..|+++ |++|+++|+++
T Consensus 7 vvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE--NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 99999999999999999998 99999999853
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.49 E-value=0.01 Score=53.21 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=71.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh-ccCc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
++|+|-|.|.||..+|..|.+. |..|++.|.++..++.+.... + .... +.++.+ .+||
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~--Gakvv~~d~~~~~~~~~~~~~-----------------g-~~~~-~~~~~~~~~cD 98 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD 98 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEeecccHHHHHHHHHhc-----------------C-Cccc-CCccccccccc
Confidence 4799999999999999999998 999999999999887765421 1 1222 223333 4899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCCCceEEeeCCcccc
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+++-|--.. ..+.. .+. .++ -.+|+.....++.+. +..++|.+.+ +++.|.++.
T Consensus 99 Il~PcA~~~----------~I~~~----~~~----~l~-ak~Ive~ANn~~t~~-ea~~~L~~rG------I~~iPD~la 152 (230)
T d1leha1 99 IFAPCALGA----------VLNDF----TIP----QLK-AKVIAGSADNQLKDP-RHGKYLHELG------IVYAPDYVI 152 (230)
T ss_dssp EEEECSCSC----------CBSTT----HHH----HCC-CSEECCSCSCCBSSH-HHHHHHHHHT------CEECCHHHH
T ss_pred Eeccccccc----------ccChH----Hhh----ccC-ccEEEecccCCCCCc-hHHHHHHhhC------cEEEeehhh
Confidence 998884321 12211 122 233 345544333666554 3456676654 467888753
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.49 E-value=0.0056 Score=49.31 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=29.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+++|||.|++|+-+|..|++. |.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhc--CCeEEEEEec
Confidence 3699999999999999999998 9999999875
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.47 E-value=0.0076 Score=48.53 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|+-+|..|++. |++|+++++.+
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILD 63 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHhhcc--ceEEEEEEecC
Confidence 4799999999999999999998 99999999864
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.015 Score=44.15 Aligned_cols=75 Identities=11% Similarity=0.078 Sum_probs=50.8
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++||+|+|+.= ..+.+++.|.++|++|.++|....++... .+. ..-.+
T Consensus 2 ~~~~K~v~ViGlG~----------sG~s~a~~L~~~g~~v~~~D~~~~~~~~~-~~~------------------~~~~~ 52 (93)
T d2jfga1 2 DYQGKNVVIIGLGL----------TGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLP------------------EAVER 52 (93)
T ss_dssp CCTTCCEEEECCSH----------HHHHHHHHHHHTTCCCEEEESSSSCTTGG-GSC------------------TTSCE
T ss_pred CcCCCEEEEEeECH----------HHHHHHHHHHHCCCEEEEeeCCcCchhHH-HHh------------------hccce
Confidence 46899999999854 47889999999999999999876644221 110 00112
Q ss_pred EEecCHHhhcccccEEEEEecCcc
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
.+.....+.+.++|.+|+....+.
T Consensus 53 ~~~~~~~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 53 HTGSLNDEWLMAADLIVASPGIAL 76 (93)
T ss_dssp EESBCCHHHHHHCSEEEECTTSCT
T ss_pred eecccchhhhccCCEEEECCCCCC
Confidence 222223455778999999777663
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.43 E-value=0.0081 Score=48.04 Aligned_cols=33 Identities=33% Similarity=0.305 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|+-+|..|++. |.+|+++.+.+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEEeec
Confidence 4799999999999999999998 99999999754
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0072 Score=48.77 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|+-+|..|++. |.+|+++++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~--G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC--CcEEEEEeecc
Confidence 4799999999999999999998 99999999864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.37 E-value=0.024 Score=47.49 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=34.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|...+..+... |.+|++.+.++++.+.+++
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred EEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh
Confidence 689999999998766666655 8999999999999988876
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.19 E-value=0.03 Score=47.62 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=35.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... | .+|++.|+++++++..++
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~--G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceeeccCChHHHHHHHHH
Confidence 689999999999988888777 6 589999999999988776
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.18 E-value=0.009 Score=47.37 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.++.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc--ccceEEEeeec
Confidence 4799999999999999999998 99999999864
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.15 E-value=0.0095 Score=48.65 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~--g~~Vtvie~~~ 68 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAA 68 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhh--Ccceeeeeecc
Confidence 4799999999999999999998 99999999864
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.12 E-value=0.0069 Score=48.77 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.++.|||.|++|+-+|..|++. |.+|+++.+++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~--G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEEccchHHHHHHHHHHhc--CCeEEEEEEcc
Confidence 4799999999999999999998 99999998864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.12 E-value=0.012 Score=50.94 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=50.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-e---cCHHHhh
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-S---TDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t---~d~~~a~ 76 (480)
++|-|.| .|.+|..+|..|+++ |.+|++++|++++.+.+.+. +.......-... . ++.++++
T Consensus 24 K~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADS-----------VNKRFKVNVTAAETADDASRAEAV 90 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH-----------HHHHHTCCCEEEECCSHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHH-----------HHhccchhhhhhhcccHHHHHHHh
Confidence 3577777 799999999999998 99999999999988776541 100000001111 1 2344567
Q ss_pred ccCcEEEEecc
Q 011641 77 SEADIVFVSVN 87 (480)
Q Consensus 77 ~~aDvVii~Vp 87 (480)
.++|++|-+.+
T Consensus 91 ~~iDilin~Ag 101 (191)
T d1luaa1 91 KGAHFVFTAGA 101 (191)
T ss_dssp TTCSEEEECCC
T ss_pred cCcCeeeecCc
Confidence 89999887754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.12 E-value=0.024 Score=51.88 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=30.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||.|+| .|++|..++..|.++ ||+|++++|++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~ 37 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPE 37 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCC
Confidence 6899999 599999999999998 99999999864
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.10 E-value=0.03 Score=44.41 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=63.7
Q ss_pred cEEEEEC----CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+||| -|..|..+...|.+. ||+|+.+..+.+.+ .++++..++++.-.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~--g~~V~pVnP~~~~i------------------------~G~~~y~sl~~lp~ 55 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK 55 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC--CCEEEEEccccccc------------------------cCccccccchhccc
Confidence 6899999 478999999999998 99988776532211 13566777777546
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
..|++++|+|. +.+.++++++...- ...+++ .+. ...+++.+.+++.+
T Consensus 56 ~~D~vvi~vp~---------------~~~~~~l~~~~~~g-~k~v~~-~~g---~~~~~~~~~a~~~g 103 (116)
T d1y81a1 56 DVDVIVFVVPP---------------KVGLQVAKEAVEAG-FKKLWF-QPG---AESEEIRRFLEKAG 103 (116)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHHTT-CCEEEE-CTT---SCCHHHHHHHHHHT
T ss_pred cceEEEEEeCH---------------HHHHHHHHHHHhcC-CceEEe-ccc---hhhHHHHHHHHHcC
Confidence 77999999884 23456666655432 234443 221 22345666666653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0075 Score=44.46 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|+|+|.|-.|.-|+..-.+- |++|.++|.++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCC
Confidence 68899999999999999888887 99999999853
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.07 E-value=0.0068 Score=53.44 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=29.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
||+|||+|.-|++.|..|+++ |+ +|++++.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEA--GITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCC
Confidence 799999999999999999998 85 799999853
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.07 E-value=0.04 Score=44.20 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=47.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCc--CCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|-|+|.|.+|..++..|. +++|.++|.++++++.+.....++. ++.-++.+.+ .-+.+|+
T Consensus 2 HivI~G~g~~g~~l~~~L~----~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~-------------a~i~~A~ 64 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR----GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-------------ANVRGAR 64 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC----GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHH-------------TTCTTCS
T ss_pred EEEEECCCHHHHHHHHHHc----CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHH-------------hhhhcCc
Confidence 4789999999999999883 5678999999999998875433221 2222222221 1256889
Q ss_pred EEEEecc
Q 011641 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
.++++.+
T Consensus 65 ~vi~~~~ 71 (129)
T d2fy8a1 65 AVIVNLE 71 (129)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999865
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.07 E-value=0.035 Score=47.20 Aligned_cols=116 Identities=9% Similarity=0.161 Sum_probs=74.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec-
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW- 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 404 (480)
||+|+|+.. ....+++.|.++|++|.+||..-+..+...+. .+..+ .........
T Consensus 3 kIGvIGlG~----------MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~-----~~~~~---------~~~~~~~~~~ 58 (178)
T d1pgja2 3 DVGVVGLGV----------MGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-----NASAP---------FAGNLKAFET 58 (178)
T ss_dssp SEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-----TTTST---------TGGGEEECSC
T ss_pred EEEEEeehH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-----CCccc---------cccchhhhhh
Confidence 699999854 78899999999999999999865543322211 11110 011222222
Q ss_pred --CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 405 --DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 405 --~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
+....+..++.+.++........-....+...+....+++|....... +++...++.|..-
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda 127 (178)
T d1pgja2 59 MEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM 127 (178)
T ss_dssp HHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred hhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecc
Confidence 334456677888888777665544456677777777799999877653 2344678888664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.021 Score=48.16 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=33.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|+..++.+... |.++++.|.++++.+.+++
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc
Confidence 3689999999999766655555 8999999999998877665
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.03 E-value=0.05 Score=46.31 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=35.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
.|.|+|+|-+|+...+.+... | .+|+++|+++++++..++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceEEEecCcHHHHHHHHh
Confidence 589999999999888888776 6 589999999999987765
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.083 Score=44.70 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=61.7
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+..+-++++++|.|+|=+- --..+|+..|.++|++|.+.+-...
T Consensus 31 ~~~~i~l~Gk~vvVIGrS~---------iVGrPLa~lL~~~gatVt~~~~~t~--------------------------- 74 (170)
T d1a4ia1 31 KETGVPIAGRHAVVVGRSK---------IVGAPMHDLLLWNNATVTTCHSKTA--------------------------- 74 (170)
T ss_dssp HTTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTCS---------------------------
T ss_pred HHhCcccccceEEEEecCC---------ccchHHHHHHHhccCceEEEecccc---------------------------
Confidence 3344578999999999532 3578999999999999999886443
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
++.+-+++||.+|.++..+.+-..+| .++..+|||.-
T Consensus 75 ---------~l~~~~~~aDivi~a~G~~~~i~~~~------vk~g~iviDvg 111 (170)
T d1a4ia1 75 ---------HLDEEVNKGDILVVATGQPEMVKGEW------IKPGAIVIDCG 111 (170)
T ss_dssp ---------SHHHHHTTCSEEEECCCCTTCBCGGG------SCTTCEEEECC
T ss_pred ---------cHHHHHhhccchhhcccccccccccc------ccCCCeEeccC
Confidence 33455789999999999999865432 34556999985
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.00 E-value=0.1 Score=47.04 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=34.7
Q ss_pred cEEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+||++| | .+-+|..+|..|++. |++|++.|+++++++++.
T Consensus 1 KKValITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~ 42 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVA 42 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 588777 5 577999999999998 999999999998877655
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.0084 Score=56.63 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=29.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|||.|+| .|++|..++..|.++ |++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~--g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence 8999998 699999999999998 999999986
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.009 Score=55.70 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=31.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||+|.-|+++|..|+++ |++|.+++.+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 67899999999999999999998 99999999853
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.89 E-value=0.04 Score=48.04 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=54.6
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC-----cccccce
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS-----PTMVKQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 400 (480)
||+|+|++| -.+.++-.|.++|.+|.+||..-.. + ..+. ....|+...... ......+
T Consensus 2 kI~ViGlG~----------vGl~~a~~la~~g~~V~g~D~n~~~--i-~~ln----~g~~p~~e~~~~~~l~~~~~~~~~ 64 (202)
T d1mv8a2 2 RISIFGLGY----------VGAVCAGCLSARGHEVIGVDVSSTK--I-DLIN----QGKSPIVEPGLEALLQQGRQTGRL 64 (202)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHH--H-HHHH----TTCCSSCCTTHHHHHHHHHHTTCE
T ss_pred EEEEECCCH----------hHHHHHHHHHhCCCcEEEEeCCHHH--H-HHhc----ccCCcccchhhhhhhhhhhccccc
Confidence 799999999 6799999999999999999974322 2 1111 011111100000 0011346
Q ss_pred EEecCHHhhcccccEEEEEecCcc
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
...++..++++++|+++|+++-|.
T Consensus 65 ~~~~~~~~~i~~~d~i~i~VpTP~ 88 (202)
T d1mv8a2 65 SGTTDFKKAVLDSDVSFICVGTPS 88 (202)
T ss_dssp EEESCHHHHHHTCSEEEECCCCCB
T ss_pred ccCCCHHHHHhhCCEEEEecCccc
Confidence 778899999999999999988764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.89 E-value=0.012 Score=46.73 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~ 55 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTE 55 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhc--chhheEeeccc
Confidence 4799999999999999999998 99999999864
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.082 Score=44.47 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=61.0
Q ss_pred HHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcc
Q 011641 316 ASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+..+-.+.+++|.|+|-+- .-..+++..|.++|++|.+.+-...
T Consensus 29 ~~y~i~l~GK~v~VIGrS~---------~VG~Pla~lL~~~gatVt~~h~~t~--------------------------- 72 (166)
T d1b0aa1 29 ERYNIDTFGLNAVVIGASN---------IVGRPMSMELLLAGCTTTVTHRFTK--------------------------- 72 (166)
T ss_dssp HHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHTTTCEEEEECSSCS---------------------------
T ss_pred HHcCcccccceEEEEeccc---------cccHHHHHHHHHhhccccccccccc---------------------------
Confidence 3345578999999999543 4678899999999999999765332
Q ss_pred cccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
++.+.+++||.+|.++..+.+-.-|| .++..+|||.-
T Consensus 73 ---------~l~~~~~~ADivI~a~G~p~~i~~~~------vk~g~vvIDvG 109 (166)
T d1b0aa1 73 ---------NLRHHVENADLLIVAVGKPGFIPGDW------IKEGAIVIDVG 109 (166)
T ss_dssp ---------CHHHHHHHCSEEEECSCCTTCBCTTT------SCTTCEEEECC
T ss_pred ---------hhHHHHhhhhHhhhhccCcccccccc------cCCCcEEEecC
Confidence 34556789999999999998755442 34556999963
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.77 E-value=0.034 Score=47.03 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=34.7
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
+|.|+|+|.+|+..++.+...+ +..|++.|+++++.+.+++.
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ 76 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL 76 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT
T ss_pred EEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc
Confidence 5899999999998887776662 36789999999999988763
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.74 E-value=0.011 Score=49.57 Aligned_cols=91 Identities=16% Similarity=0.306 Sum_probs=50.3
Q ss_pred EEEEECC-ChhHHHHHHHHHHcC-CCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 3 KICCIGA-GYVGGPTMAVIALKC-PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~-~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||||+ ||+|.-+...|+++. |-.++..+.-+.. .|. .+.... .........+....++|
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------~G~-~~~~~~----------~~~~~~~~~~~~~~~~d 65 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------AGK-SLKFKD----------QDITIEETTETAFEGVD 65 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------TTC-EEEETT----------EEEEEEECCTTTTTTCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------ccc-cccccC----------Ccccccccchhhhhhhh
Confidence 8999996 999999999998761 2234444443211 121 111000 11222222334467899
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++++|.|.. ...+........+..||+.|.
T Consensus 66 ~~f~~~~~~------------------~s~~~~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 66 IALFSAGSS------------------TSAKYAPYAVKAGVVVVDNTS 95 (154)
T ss_dssp EEEECSCHH------------------HHHHHHHHHHHTTCEEEECSS
T ss_pred hhhhccCcc------------------chhhHHhhhccccceehhcCh
Confidence 999997631 111222234456888888764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.73 E-value=0.012 Score=50.45 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=51.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|.++.+++..|.+. | +|++++|+.++.+.+.+.......... . ..+.. .++......+|+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~~~ka~~l~~~~~~~~~~~~---~-----~~~~~-~~~~~~~~~~dl 86 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEIAEKLNKKF---G-----EEVKF-SGLDVDLDGVDI 86 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHHHHHHTCCH---H-----HHEEE-ECTTCCCTTCCE
T ss_pred CEEEEECCcHHHHHHHHHHccc--c-ceeeehhhhhHHHHHHHHHHHhhchhh---h-----hhhhh-hhhhhccchhhh
Confidence 4799999999999999888765 5 899999999998887641000000000 0 01222 333444678999
Q ss_pred EEEeccCCC
Q 011641 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
+|-|+|.+.
T Consensus 87 iIn~tp~g~ 95 (177)
T d1nvta1 87 IINATPIGM 95 (177)
T ss_dssp EEECSCTTC
T ss_pred hccCCcccc
Confidence 999977654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.72 E-value=0.014 Score=48.90 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||.|||.|+.|..+|..|.+.++..+|++++.++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 58999999999999999999884446899998765
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.67 E-value=0.0057 Score=58.05 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=35.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
.+|.|.| .|++|..++..|.++ |++|++..|+.++.+.+.
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~--G~~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCchhHHHHH
Confidence 4799998 699999999999998 999999999988777655
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.012 Score=51.52 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.|||+|.-|+..|..|+++ |++|.+++.++
T Consensus 8 viViGaG~~Gl~~A~~La~~--G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD--GKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCCEEEEcCCC
Confidence 89999999999999999998 99999999863
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.045 Score=46.85 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=33.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
.+|.|||+|.+|.+++..|.+.+ ..++++++|++++.+++
T Consensus 19 k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~~~~~~~ 58 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKA 58 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcC-CceEeeeccchHHHHHH
Confidence 47999999999999999999872 34899999998766554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.60 E-value=0.065 Score=45.25 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
+|.|+|+|-+|+..+..++..+ +.+|++.|+++++.+..++.
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh
Confidence 6899999999999998888762 47999999999998887763
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.57 E-value=0.021 Score=49.52 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=59.5
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+|+|.+ +-+..++..|.+.|.+|.+|+.. ++.. ..+...+ ..|. ..| .-...+++....
T Consensus 8 ~KI~ViGaG----------~wGtAlA~~La~~g~~V~l~~r~--~~~~-~~i~~~~---~n~~-yl~-~~~l~~~i~~t~ 69 (189)
T d1n1ea2 8 NKAVVFGSG----------AFGTALAMVLSKKCREVCVWHMN--EEEV-RLVNEKR---ENVL-FLK-GVQLASNITFTS 69 (189)
T ss_dssp EEEEEECCS----------HHHHHHHHHHHTTEEEEEEECSC--HHHH-HHHHHHT---BCTT-TST-TCBCCTTEEEES
T ss_pred ceEEEECCC----------HHHHHHHHHHHHcCCeEEEEEec--HHHH-HHHhhcc---cccc-ccc-ccccccccccch
Confidence 589999974 58899999999999999999864 3322 2221000 0010 001 112346788999
Q ss_pred CHHhhcccccEEEEEecCccccc
Q 011641 405 DAYEATKDAHGVCILTEWDEFKT 427 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~~~~ 427 (480)
+++++++++|.|+++++...+++
T Consensus 70 ~l~~a~~~ad~iiiavPs~~~~~ 92 (189)
T d1n1ea2 70 DVEKAYNGAEIILFVIPTQFLRG 92 (189)
T ss_dssp CHHHHHTTCSCEEECSCHHHHHH
T ss_pred hhhhccCCCCEEEEcCcHHHHHH
Confidence 99999999999999999987765
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.53 E-value=0.015 Score=46.95 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.++.|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeec
Confidence 4799999999999999999998 99999998854
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.02 Score=45.22 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|+|.|-.|.-||....+. |++|+++|.+++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCCC
Confidence 5899999999999999988887 999999998754
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.50 E-value=0.13 Score=41.75 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=24.0
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EEC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDI 34 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~ 34 (480)
||+|+| .|.||..++..+.+. +++++.+ +|+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~~~d~ 33 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSAELDA 33 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-TTSEEEEEECT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 799999 599999999887764 3777653 553
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.2 Score=44.70 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=56.4
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+++| | .+-+|..+|..|+++ |++|+++|+++++++.+.+. +.+ .+..
T Consensus 8 kv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~--------------------------~~~--~~~~ 57 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAK--------------------------CKG--LGAK 57 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH--------------------------HHH--TTCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH--------------------------HHh--cCCc
Confidence 45555 6 567999999999999 99999999999988776541 011 2234
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+..+.+. ..|...+++.++.+......=.++|+...
T Consensus 58 ~~~~~~D------------vs~~~~v~~~~~~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 58 VHTFVVD------------CSNREDIYSSAKKVKAEIGDVSILVNNAG 93 (244)
T ss_dssp EEEEECC------------TTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred EEEEEee------------CCCHHHHHHHHHHHHHHcCCCceeEeecc
Confidence 4444321 12445677788888776666666666543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.45 E-value=0.046 Score=45.97 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=34.5
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+ |.+|...+..+... | ..|+++|+++++.+.+++
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHH
T ss_pred EEEEEeccccceeeeeeccccc--ccccccccccchhhHHHHHH
Confidence 6899995 99999888877776 5 699999999999988875
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.44 E-value=0.013 Score=54.07 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.0
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-CeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~ 35 (480)
.+|.|||.|.+|+++|..|+++ | ++|+++|++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTR--GWNNITVLDQG 34 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCC
Confidence 3799999999999999999998 7 479999986
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.016 Score=53.09 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.||+|||+|.-|++.|..|+++ |++|++++.+
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 4799999999999999999998 9999999875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.019 Score=48.57 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=34.6
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|+..++.+... |.+|+++|+++++++..++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK 69 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc
Confidence 3799999999999876655555 8999999999999888775
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.32 E-value=0.22 Score=44.68 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=34.6
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
||++| |.+-+|.++|..|+++ |++|++.|+++++++++.+
T Consensus 3 KValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 44 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLK 44 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 78877 5688999999999999 9999999999988776553
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.034 Score=52.10 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=32.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAW 42 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l 42 (480)
|||.|.| +|++|..++..|.++ | ++|+++|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~--g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCCCcchhhh
Confidence 8999998 699999999999987 6 5899999875544433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.25 E-value=0.04 Score=46.93 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=34.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... |. .|++.|+++++.+..++
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHh--CCceeeeeccchHHHHHHHH
Confidence 689999999999877777766 65 78999999999887776
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.20 E-value=0.076 Score=44.07 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCCCeEEEEeeccCCCCCcccCC-hHHHHHHHHHhCCCEEEE-EcCCCC-hH-HHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRET-PAIDVCKGLLGDKARLSI-YDPQVT-ED-QIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g~~V~~-~DP~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.||+++| |+++| -+-.++..|...|.++.+ .-|... +. ..... .-
T Consensus 1 l~gl~i~~vG--------D~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~--------------------~~ 52 (153)
T d1pg5a2 1 IDGLVFALLG--------DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDE--------------------LN 52 (153)
T ss_dssp STTCEEEEEE--------CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTT--------------------CC
T ss_pred CCCCEEEEEC--------CCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhccc--------------------CC
Confidence 4688999998 99998 588899999999998654 333222 11 11111 11
Q ss_pred cceEEecCHHhhcccccEEEEE
Q 011641 398 KQVSVVWDAYEATKDAHGVCIL 419 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~ 419 (480)
..+++.+++++++++||+|...
T Consensus 53 ~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 53 YPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp SCEEEESCGGGTGGGCSEEEEE
T ss_pred CeEEEEeCHHHHhhcCCeEEEe
Confidence 3578889999999999977653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.13 E-value=0.2 Score=45.69 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=34.4
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++|| |.|.+|..+|..|+++ |++|++.|++.++.+.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 77777 6899999999999998 999999999998876644
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.18 Score=45.40 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=33.7
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+.+|..+|..|+++ |++|+++++++++++++.+
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45544 5 689999999999998 9999999999998877653
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.08 E-value=0.045 Score=46.75 Aligned_cols=108 Identities=12% Similarity=0.180 Sum_probs=71.3
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|. ++-+..++..|.+.|.+|.+|....+++.+ ..+...+ .+|.. ........+...++
T Consensus 2 kI~ViGa----------G~~GtalA~~la~~g~~V~l~~r~~~~~~~-~~i~~~~---~~~~~---~~~~~~~~i~~~~~ 64 (180)
T d1txga2 2 IVSILGA----------GAMGSALSVPLVDNGNEVRIWGTEFDTEIL-KSISAGR---EHPRL---GVKLNGVEIFWPEQ 64 (180)
T ss_dssp EEEEESC----------CHHHHHHHHHHHHHCCEEEEECCGGGHHHH-HHHHTTC---CBTTT---TBCCCSEEEECGGG
T ss_pred EEEEECC----------CHHHHHHHHHHHHCCCEEEEEEecccHHHH-HHHhhhh---hhhhh---cchhcccccccccc
Confidence 7899997 458899999999999999999654333322 1121000 01100 00111234566788
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
+.++++++|+|+++++...+++. .+++....+...+|+-++++.+
T Consensus 65 ~~~~~~~ad~Ii~avps~~~~~~-~~~l~~~l~~~~ii~~tkg~~~ 109 (180)
T d1txga2 65 LEKCLENAEVVLLGVSTDGVLPV-MSRILPYLKDQYIVLISKGLID 109 (180)
T ss_dssp HHHHHTTCSEEEECSCGGGHHHH-HHHHTTTCCSCEEEECCCSEEE
T ss_pred HHHHHhccchhhcccchhhhHHH-HHhhccccccceecccccCccc
Confidence 99999999999999998887763 5667666666657777777653
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.07 E-value=0.074 Score=43.49 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=63.6
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |..|..++..|.++ ||+|+.+....+.+ .+..+..++++.-.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~--g~~v~pVnP~~~~i------------------------~G~~~~~sl~dlp~ 73 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH--GYDVYPVNPKYEEV------------------------LGRKCYPSVLDIPD 73 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGCSS
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC--CCEEEEECCccccc------------------------CCCcccccccccCc
Confidence 47999995 67999999999998 99988876532111 13566677777555
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. +.+.++++++... ....+++. +.+..+++.+.+++.
T Consensus 74 ~iD~v~i~vp~---------------~~~~~~~~e~~~~-g~k~v~~~----~G~~~ee~~~~a~~~ 120 (139)
T d2d59a1 74 KIEVVDLFVKP---------------KLTMEYVEQAIKK-GAKVVWFQ----YNTYNREASKKADEA 120 (139)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHH-TCSEEEEC----TTCCCHHHHHHHHHT
T ss_pred cceEEEEEeCH---------------HHHHHHHHHHHHh-CCCEEEEe----ccccCHHHHHHHHHC
Confidence 78999999873 3456677776654 23344442 223345555555554
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.11 Score=43.95 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=56.4
Q ss_pred cEEEEECCC-hhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCC-CCCcCCChHHHHhhhcCCCEEE-e-cCHHHhhc
Q 011641 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF-S-TDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~-t-~d~~~a~~ 77 (480)
++|.|||-+ .+|.|||..|+++ |..|+.++.+... ....+. ..+...+. ..+.. + +.+++...
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~--gaTVt~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~lk~~~~ 96 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQ--KFTRGESLKLNKHHV---------EDLGEYSEDLLKKCSL 96 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEE--EEESCCCSSCCCCEE---------EEEEECCHHHHHHHHH
T ss_pred CEEEEECCccccHHHHHHHHHHC--CCEEEEecccccc--ccccccceeeeeecc---------ccccccchhHHhhccc
Confidence 479999955 6799999999998 8999998875211 011110 00000000 00111 1 12555667
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+|++|.++|.|.-. .. ..++++|++|++-+.
T Consensus 97 ~aDIvIsavG~p~~~--------i~-----------~d~ik~GavvIDvGi 128 (171)
T d1edza1 97 DSDVVITGVPSENYK--------FP-----------TEYIKEGAVCINFAC 128 (171)
T ss_dssp HCSEEEECCCCTTCC--------BC-----------TTTSCTTEEEEECSS
T ss_pred cCCEEEEccCCCccc--------cC-----------hhhcccCceEeeccc
Confidence 899999999876320 00 145678999987543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.95 E-value=0.021 Score=50.88 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|.|||.|.-|+..|..|++. |++|++++.+.+
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~ 83 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEK 83 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred ceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccc
Confidence 4799999999999999999998 999999998764
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.84 E-value=0.017 Score=52.41 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=30.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||-|.|. |++|..++..|.++ ||+|+++|++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~ 34 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQ 34 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeech
Confidence 89999996 99999999999998 9999999985
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.81 E-value=0.018 Score=50.91 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCC-------CeEEEEECCHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~ 37 (480)
.||+|||+|.-|++.|..|+++ | ++|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~--G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKA--ADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHc--CCccccCCCceEEEecCCC
Confidence 4899999999999999999998 6 58999998764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.80 E-value=0.22 Score=44.74 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=32.9
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++|| | .+.+|..+|..|++. |++|++.|+++++++...
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~ 45 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASK 45 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 45555 5 578999999999999 999999999999877654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.59 E-value=0.026 Score=51.22 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
-|.|||.|.+|+++|..|+++ |++|+++|..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~--G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC
Confidence 389999999999999999998 9999999974
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.56 E-value=2.2 Score=37.43 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=93.4
Q ss_pred cEEEEECCChhHHHHHHHHH-HcCCCCeEEEEE-----------CCHHHHHHHHcC-CCCCcCCChHHHHhhhcCCCEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVD-----------ISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D-----------~~~~~v~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
++|+|-|.|.||..+|..|+ +. |..|+.++ +|.+.+..+.+. ......+ ..+.
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~--Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~------------~~~~ 97 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQEL--GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP------------KGER 97 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH--CCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCS------------SCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhc--CCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccc------------ccee
Confidence 47999999999999999997 46 88888765 334444444321 1111111 1222
Q ss_pred ecCHHHhhc-cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhcCCC
Q 011641 69 STDVEKHVS-EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG 147 (480)
Q Consensus 69 t~d~~~a~~-~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g 147 (480)
. +.++.+. +||+++-|--.. ..+ ...++.++ -.+|+ +.-..|-+.+ ..++|.+.+
T Consensus 98 ~-~~~~~~~~~~DI~~PcA~~~----------~I~--------~~~a~~l~-~~~I~-e~AN~p~t~~-a~~~L~~rg-- 153 (234)
T d1b26a1 98 I-TNEELLELDVDILVPAALEG----------AIH--------AGNAERIK-AKAVV-EGANGPTTPE-ADEILSRRG-- 153 (234)
T ss_dssp E-CHHHHHTSCCSEEEECSCTT----------CBC--------HHHHTTCC-CSEEE-CCSSSCBCHH-HHHHHHHTT--
T ss_pred e-ccccccccccceeecchhcc----------ccc--------HHHHHHhh-hceEe-ecCCCCCCHH-HHHHHHHCC--
Confidence 2 3344444 899998773211 122 22334444 34444 4555554544 456677654
Q ss_pred CceEEeeCCccccccccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHhhhhHhHHHHHHH
Q 011641 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~e~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
+.+.|.++.- .||. --..+|..+..-... ....+. .+.+...+.
T Consensus 154 ----I~~~PD~~aN--------------aGGV----i~s~~E~~qn~~~~~----------w~~e~V----~~~l~~~m~ 197 (234)
T d1b26a1 154 ----ILVVPDILAN--------------AGGV----TVSYFEWVQDLQSFF----------WDLDQV----RNALEKMMK 197 (234)
T ss_dssp ----CEEECHHHHT--------------THHH----HHHHHHHHHHHTTCC----------CCHHHH----HHHHHHHHH
T ss_pred ----eEEechHHhc--------------CCCe----eeeehhcccccchhc----------ccHHHH----HHHHHHHHH
Confidence 4577876532 1221 012333333322110 111222 223333444
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhc
Q 011641 228 SSVNAMSALCEATGANVSQVAFAVG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~Gid~~~v~~~~~ 252 (480)
..++++...+++.++|+.+....+.
T Consensus 198 ~~~~~v~~~a~~~~~~~r~aA~~~A 222 (234)
T d1b26a1 198 GAFNDVMKVKEKYNVDMRTAAYILA 222 (234)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 5557888889999998877765543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.54 E-value=0.073 Score=44.82 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..++..+ +.+|++.|+++++.+..++
T Consensus 31 ~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 31 TCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred EEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH
Confidence 6899999999998888887763 5689999999999988776
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.2 Score=44.85 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=33.6
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|.++|..|++. |++|++.|+++++.+++.+
T Consensus 4 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55666 5 588999999999998 9999999999998776553
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.45 E-value=0.3 Score=43.61 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.0
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
||++| | .+-+|..+|..|+++ |++|+++|++++.++.+.+
T Consensus 11 KvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 67766 5 578999999999998 9999999999988776553
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.032 Score=51.60 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|+|||+|.-|++.|..|+++ |++|++++.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS--GLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 89999999999999999998 99999999753
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.27 E-value=0.22 Score=39.14 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=69.3
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
++|+|+|+|=+ .++++..+.+.|.+.|++|..-.|.... + .++....
T Consensus 2 KsIAVvGaS~~------~~k~g~~v~~~L~~~g~~V~pVnP~~~~--i-------------------------~G~~~y~ 48 (116)
T d1y81a1 2 RKIALVGASKN------PAKYGNIILKDLLSKGFEVLPVNPNYDE--I-------------------------EGLKCYR 48 (116)
T ss_dssp CEEEEETCCSC------TTSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEECBS
T ss_pred cEEEEEcccCC------CCCcHHHHHHHHHHCCCEEEEEcccccc--c-------------------------cCccccc
Confidence 68999998644 4789999999999999999888886532 1 2345556
Q ss_pred CHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh---hhhhhcCcEEE
Q 011641 405 DAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA---NKLREIGFIVY 463 (480)
Q Consensus 405 ~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~---~~~~~~g~~y~ 463 (480)
++.+.=...|++++.++.+.-.+. .+++.+. ..+ .++-.-+..++ +.+++.|+++.
T Consensus 49 sl~~lp~~~D~vvi~vp~~~~~~~-l~~~~~~-g~k-~v~~~~g~~~~~~~~~a~~~gi~vi 107 (116)
T d1y81a1 49 SVRELPKDVDVIVFVVPPKVGLQV-AKEAVEA-GFK-KLWFQPGAESEEIRRFLEKAGVEYS 107 (116)
T ss_dssp SGGGSCTTCCEEEECSCHHHHHHH-HHHHHHT-TCC-EEEECTTSCCHHHHHHHHHHTCEEE
T ss_pred cchhccccceEEEEEeCHHHHHHH-HHHHHhc-CCc-eEEeccchhhHHHHHHHHHcCCEEE
Confidence 777755678999999887654332 2233332 333 45555566664 34556788774
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=93.22 E-value=0.029 Score=52.23 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=30.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.|+|||+|.-|+.+|..|.++ |++|+++|.+++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLREL--GRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhC--CCCEEEEEcCCC
Confidence 699999999999999999998 999999999765
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=93.21 E-value=0.39 Score=42.81 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=33.9
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++.+.+.+
T Consensus 7 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 4 788999999999998 9999999999988776553
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.21 E-value=0.022 Score=45.90 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=28.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEE-EECCHHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRI 39 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v 39 (480)
+|.|+|+|.+|..++..+..+ .++++++ +|-|+++.
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k~ 41 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEKV 41 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTT
T ss_pred eEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHhc
Confidence 799999999999999876543 3777665 68887654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=93.15 E-value=0.17 Score=42.26 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred HHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEc--CCCChHHHHHhhhccccCCCCCCC
Q 011641 311 VNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYD--PQVTEDQIQRDLTMNKFDWDHPLH 388 (480)
Q Consensus 311 ~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~ 388 (480)
++-+++..+.-+.+++|.|+|-.+ -..-+++.|...|+.|.+++ |.-. ++.
T Consensus 10 ~d~i~r~t~~~laGk~vvV~GYG~----------vGrG~A~~~rg~Ga~V~V~E~DPi~a---lqA-------------- 62 (163)
T d1v8ba1 10 PDGLMRATDFLISGKIVVICGYGD----------VGKGCASSMKGLGARVYITEIDPICA---IQA-------------- 62 (163)
T ss_dssp HHHHHHHHCCCCTTSEEEEECCSH----------HHHHHHHHHHHHTCEEEEECSCHHHH---HHH--------------
T ss_pred HHHHHHHhCceecCCEEEEecccc----------cchhHHHHHHhCCCEEEEEecCchhh---HHH--------------
Confidence 344555555568999999999766 66889999999999999976 4322 211
Q ss_pred CCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 389 LQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
.++++++ .+++++++.+|.+|-+|.+... ++.+.+ +.|+..++|... +-+|
T Consensus 63 -------~mdGf~v-~~~~~a~~~aDi~vTaTGn~~v--I~~~h~-~~MKdgaIl~N~-GHfd 113 (163)
T d1v8ba1 63 -------VMEGFNV-VTLDEIVDKGDFFITCTGNVDV--IKLEHL-LKMKNNAVVGNI-GHFD 113 (163)
T ss_dssp -------HTTTCEE-CCHHHHTTTCSEEEECCSSSSS--BCHHHH-TTCCTTCEEEEC-SSTT
T ss_pred -------HhcCCcc-CchhHccccCcEEEEcCCCCcc--ccHHHH-HHhhCCeEEEec-cccc
Confidence 1244554 5789999999999999999863 455554 678887555544 4444
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.14 Score=47.32 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=32.6
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++...
T Consensus 13 KvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~ 53 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAA 53 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 44544 5 678999999999998 999999999998877654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.11 E-value=0.35 Score=43.38 Aligned_cols=40 Identities=23% Similarity=0.466 Sum_probs=33.0
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+.+|..+|..|+++ |++|++.|++++.++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEA 47 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44444 6 577999999999999 9999999999988776553
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.03 E-value=0.35 Score=43.19 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=32.1
Q ss_pred EEE-EEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++ |-| .+.+|..+|..|++. |++|++.|+++++.++..
T Consensus 6 K~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~ 46 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAA 46 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 444 445 578999999999999 999999999998876544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.39 Score=42.97 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=34.3
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 12 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 53 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVD 53 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56777 5788999999999998 9999999999988776553
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.98 E-value=0.49 Score=42.33 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=32.6
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++|| | .+-+|..+|..|++. |++|++.|+++++++.+.
T Consensus 9 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~ 49 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCL 49 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 44544 5 578999999999998 999999999999887654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.05 Score=48.94 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=35.6
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+.+|..+|..|+++ |++|++.|+++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence 67777 6899999999999999 9999999999998877665
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.86 E-value=0.049 Score=51.43 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=30.0
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||.|.| .|++|..++..|.++ ||+|+++|+.
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~ 48 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHE--GHYVIASDWK 48 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCC
Confidence 8999998 799999999999998 9999999974
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.80 E-value=0.038 Score=49.10 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=29.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|.|||.|..|+..|..|+++ |++|+++|.++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 89999999999999999998 999999998754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.79 E-value=0.41 Score=42.61 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=33.7
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+.+|..+|..|+++ |++|++.|+++++++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 588999999999999 9999999999988876653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.70 E-value=0.037 Score=44.60 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=64.0
Q ss_pred CeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
|++.|+|++ .-...+++.|.+.|.+|.+.|+.- +.... +...+. .....+.+-.+
T Consensus 1 k~~iIiG~G----------~~G~~la~~L~~~g~~vvvid~d~--~~~~~-~~~~~~------------~~~~gd~~~~~ 55 (134)
T d2hmva1 1 KQFAVIGLG----------RFGGSIVKELHRMGHEVLAVDINE--EKVNA-YASYAT------------HAVIANATEEN 55 (134)
T ss_dssp CCEEEECCS----------HHHHHHHHHHHHTTCCCEEEESCH--HHHHH-TTTTCS------------EEEECCTTCTT
T ss_pred CEEEEECCC----------HHHHHHHHHHHHCCCeEEEecCcH--HHHHH-HHHhCC------------cceeeecccch
Confidence 478888874 467999999999999999999843 33222 210000 00000111112
Q ss_pred CHHhh-cccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcEE
Q 011641 405 DAYEA-TKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIV 462 (480)
Q Consensus 405 ~~~~a-~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~y 462 (480)
.++++ ++++|++++.+..++=..+-...+......+.+|.=..+.-..+.++..|..+
T Consensus 56 ~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~ 114 (134)
T d2hmva1 56 ELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADR 114 (134)
T ss_dssp HHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSE
T ss_pred hhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCE
Confidence 34444 77899999988776433333344445545554554444444455566666543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.14 Score=42.29 Aligned_cols=100 Identities=9% Similarity=-0.055 Sum_probs=64.3
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecC
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|.. +-...++..|.+.|.+|.+++-........... +.. ..........+
T Consensus 2 kI~IiGaG----------~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~---~~~------------~~~~~~~~~~~ 56 (167)
T d1ks9a2 2 KITVLGCG----------ALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLV---ETD------------GSIFNESLTAN 56 (167)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEE---CTT------------SCEEEEEEEES
T ss_pred EEEEECcC----------HHHHHHHHHHHHCCCceEEEEcCHHHhhhhccc---cCC------------ccccccccccc
Confidence 79999974 477889999999999999998654432211100 000 01111223345
Q ss_pred HHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011641 406 AYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD 451 (480)
Q Consensus 406 ~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~ 451 (480)
..+++.++|.++++|+-....+ -.+.+...+.+...|+...|=+.
T Consensus 57 ~~~~~~~~D~iii~vka~~~~~-~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 57 DPDFLATSDLLLVTLKAWQVSD-AVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp CHHHHHTCSEEEECSCGGGHHH-HHHHHHTTSCTTSCEEEECSSSC
T ss_pred hhhhhcccceEEEeecccchHH-HHHhhccccCcccEEeeccCccc
Confidence 5677899999999998765443 23456666665567888877443
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.51 E-value=0.051 Score=44.16 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=59.4
Q ss_pred cEEEEECCCh----------hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecC
Q 011641 2 VKICCIGAGY----------VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~----------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
.||+|+|+-+ -...++..|.++ |.+|.+||..-+..+..+. ..+..............++
T Consensus 14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~--g~~V~~~DP~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1mv8a3 14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK--GYELRIFDRNVEYARVHGA--------NKEYIESKIPHVSSLLVSD 83 (136)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT--TCEEEEECHHHHHHTTSSS--------CHHHHHHTSHHHHTTBCSC
T ss_pred CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh--hccccccCCCCCHHHHhhh--------hhhhhhhccccccceeehh
Confidence 4799999854 677889999988 9999999963222110000 0000000000011234678
Q ss_pred HHHhhccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.++++++|+|+++++-+ + ++.+...+.++.+|++.-.+
T Consensus 84 ~~e~i~~~D~ivi~t~h~------------~-------f~~l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 84 LDEVVASSDVLVLGNGDE------------L-------FVDLVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp HHHHHHHCSEEEECSCCG------------G-------GHHHHHSCCTTCEEEESSSC
T ss_pred hhhhhhhceEEEEEeCCH------------H-------HHHHHHHhcCCCEEEECCCC
Confidence 899999999999997632 1 12344456677888875433
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.51 E-value=0.057 Score=43.59 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=58.3
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.+|..+..+|.+.+ .++|+.+....+.+ .+.++..++.+.-.
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i------------------------~G~~~y~sl~dlp~ 63 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEV------------------------QGVKAYKSVKDIPD 63 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEE------------------------TTEECBSSTTSCSS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcccc------------------------CCeEeecchhhcCC
Confidence 47999996 899999999987652 36888886642211 23566777777555
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
..|++++++|. ..+.++++++.+.-- ..+++..+.+
T Consensus 64 ~vDlvvi~vp~---------------~~~~~~~~~~~~~g~-~~~vi~s~Gf 99 (129)
T d2csua1 64 EIDLAIIVVPK---------------RFVKDTLIQCGEKGV-KGVVIITAGF 99 (129)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHHTC-CEEEECCCSS
T ss_pred CCceEEEecCh---------------HHhHHHHHHHHHcCC-CEEEEecccc
Confidence 78999999884 245666777665433 3455554443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.51 Score=41.82 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISD 46 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 56666 5 688999999999998 9999999999988877653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.49 E-value=0.72 Score=42.11 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=77.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhh----
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (480)
.||.|||+|..|.+ ..+.+..+.-+|.++|+|++.++..++- .+ ..... ....+++. ..|..+-+
T Consensus 82 k~VLiiGgG~G~~~--r~~l~~~~~~~i~~VEiD~~Vi~~~~~~-f~----~~~~~---~~~~r~~i~~~Da~~~l~~~~ 151 (290)
T d1xj5a_ 82 KKVLVIGGGDGGVL--REVARHASIEQIDMCEIDKMVVDVSKQF-FP----DVAIG---YEDPRVNLVIGDGVAFLKNAA 151 (290)
T ss_dssp CEEEEETCSSSHHH--HHHTTCTTCCEEEEEESCHHHHHHHHHH-CH----HHHGG---GGSTTEEEEESCHHHHHHTSC
T ss_pred cceEEecCCchHHH--HHHHhcccceeeEEecCCHHHHHHHHHh-ch----hhhcc---ccCCCcEEEEccHHHHHhhcc
Confidence 47999999987774 4455542235799999999998877652 10 00000 11234432 33433322
Q ss_pred -ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHH---HHHHHHhcCCC-CceE
Q 011641 77 -SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA---IEKILTHNSKG-IKFQ 151 (480)
Q Consensus 77 -~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~---l~~~l~~~~~g-~~~~ 151 (480)
+..|+||+-++.|... ...+ +-.+..+.+...|+++.+++..+..+.-..+. +.+.+.+.... ..+.
T Consensus 152 ~~~yDvIi~D~~dp~~~-------~~~L-~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~ 223 (290)
T d1xj5a_ 152 EGSYDAVIVDSSDPIGP-------AKEL-FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYA 223 (290)
T ss_dssp TTCEEEEEECCCCTTSG-------GGGG-GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred ccCccEEEEcCCCCCCc-------chhh-CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEe
Confidence 2479999988766432 1111 22566788889999988887766544323333 34444443321 1233
Q ss_pred EeeCCcc
Q 011641 152 ILSNPEF 158 (480)
Q Consensus 152 v~~~Pe~ 158 (480)
..+-|.+
T Consensus 224 ~~~vPty 230 (290)
T d1xj5a_ 224 WTSVPTY 230 (290)
T ss_dssp EEECTTS
T ss_pred eEeeeee
Confidence 3456655
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.49 E-value=0.54 Score=42.25 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=33.8
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55666 4 688999999999998 9999999999998876653
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.46 E-value=0.034 Score=51.84 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=28.5
Q ss_pred EEEEECCChhHHHHHHHHHHc---CCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALK---CPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~---~~G~~V~~~D~~~ 36 (480)
-|.|||.|..|+++|..|++. ..|++|+++|+++
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence 489999999999999999731 1299999999864
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=92.14 E-value=0.096 Score=42.57 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|||+|+|-+ .++++..+++.|.+.|+++..+-|....+++ .+...
T Consensus 12 ~pksIAVVGaS~~------~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i-------------------------~g~~~ 60 (136)
T d1iuka_ 12 QAKTIAVLGAHKD------PSRPAHYVPRYLREQGYRVLPVNPRFQGEEL-------------------------FGEEA 60 (136)
T ss_dssp HCCEEEEETCCSS------TTSHHHHHHHHHHHTTCEEEEECGGGTTSEE-------------------------TTEEC
T ss_pred CCCeEEEEeecCC------CCCchHHHHHHHhcCCCCceEEEecccccee-------------------------eceec
Confidence 4679999998654 4689999999999999999999986543322 23445
Q ss_pred ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChh---hhhhcCcEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDAN---KLREIGFIVY 463 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~---~~~~~g~~y~ 463 (480)
..++.+.=...|.+++.++-..-.+ -.+++.+. ..+ .++=..+..+++ .+++.|+.+.
T Consensus 61 ~~~l~~i~~~iD~v~v~~p~~~v~~-~v~~~~~~-g~k-~i~~q~G~~~~e~~~~a~~~Gi~vV 121 (136)
T d1iuka_ 61 VASLLDLKEPVDILDVFRPPSALMD-HLPEVLAL-RPG-LVWLQSGIRHPEFEKALKEAGIPVV 121 (136)
T ss_dssp BSSGGGCCSCCSEEEECSCHHHHTT-THHHHHHH-CCS-CEEECTTCCCHHHHHHHHHTTCCEE
T ss_pred ccchhhccCCCceEEEeccHHHHHH-HHHHHHhh-CCC-eEEEecCccCHHHHHHHHHcCCEEE
Confidence 5666665456899999987543333 22344443 333 344456677653 4456788764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.11 E-value=0.18 Score=42.33 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
....+|.|+|.. -..++=++...+-|+.|.+||-..+..+ +...++ ..+
T Consensus 30 v~pa~V~ViGaG----------vaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~--------------------~~~ 79 (168)
T d1pjca1 30 VKPGKVVILGGG----------VVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG--------------------SRV 79 (168)
T ss_dssp BCCCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------------------GGS
T ss_pred CCCcEEEEECCC----------hHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc--------------------ccc
Confidence 357899999964 4778888889999999999997654332 222211 112
Q ss_pred EE----ecCHHhhcccccEEEEEecCcccccc--cHHHHHHhcCCCCEEEEcC
Q 011641 401 SV----VWDAYEATKDAHGVCILTEWDEFKTL--DYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~----~~~~~~a~~~ad~vvi~t~~~~~~~~--~~~~~~~~~~~~~~viD~~ 447 (480)
+. ...+++++++||.||=..-+|--+.+ =-++..+.|++..+|||..
T Consensus 80 ~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 80 ELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp EEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred eeehhhhhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence 22 23467889999999988887765542 2367788999989999974
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.11 E-value=0.26 Score=45.41 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=75.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVS--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~--- 77 (480)
.+|.|||+|.-|. +..+.++.+..+|.++|+|++.++..++- .+.. .. .....+++. ..|..+-++
T Consensus 91 k~VLiiGgG~G~~--~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~-~~~~----~~---~~~d~rv~v~~~Da~~~l~~~~ 160 (295)
T d1inla_ 91 KKVLIIGGGDGGT--LREVLKHDSVEKAILCEVDGLVIEAARKY-LKQT----SC---GFDDPRAEIVIANGAEYVRKFK 160 (295)
T ss_dssp CEEEEEECTTCHH--HHHHTTSTTCSEEEEEESCHHHHHHHHHH-CHHH----HG---GGGCTTEEEEESCHHHHGGGCS
T ss_pred ceEEEecCCchHH--HHHHHhcCCCceEEEecCCHHHHHHHHHH-HHhh----cc---cccCCCcEEEhhhHHHHHhcCC
Confidence 4799999998766 44555543346899999999998876641 1100 00 011234433 345444343
Q ss_pred -cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH---HHHHHHHHhcCCCCceEEe
Q 011641 78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~~g~~~~v~ 153 (480)
..|+||+-.+.|..... ..... .+..+.+...|+++.+++..+..+.-.. ..+.+.+.+.......+..
T Consensus 161 ~~yDvIi~D~~dp~~~~~---~~L~t----~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~ 233 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQG---GHLFT----EEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLG 233 (295)
T ss_dssp SCEEEEEEEC-------------CCS----HHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCcCch---hhhcc----HHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEe
Confidence 46999998776642100 00111 4567788888999888877766543232 3334444443321122334
Q ss_pred eCCcc
Q 011641 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 234 ~vPty 238 (295)
T d1inla_ 234 FMTTY 238 (295)
T ss_dssp ECTTS
T ss_pred eecee
Confidence 55665
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=92.03 E-value=0.16 Score=47.31 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=65.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhh----
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (480)
.+|.|||+|.-|. +..+.+..+..+|++++++++.++..++.-..... + .....++++ ..|..+-+
T Consensus 79 k~VLiiG~G~G~~--~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~------~~~d~rv~i~~~Da~~~l~~~~ 149 (312)
T d1uira_ 79 KRVLIVGGGEGAT--LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-G------AFDDPRAVLVIDDARAYLERTE 149 (312)
T ss_dssp CEEEEEECTTSHH--HHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-T------GGGCTTEEEEESCHHHHHHHCC
T ss_pred ceEEEeCCCchHH--HHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-C------ccCCCceEEEEchHHHHhhhcC
Confidence 4799999997655 34444443356899999999998866542100000 0 011234443 34544433
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecC
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+..|+||+-++.|...++ .+..-+-.+.++.+.+.|+++.+++..++
T Consensus 150 ~~yDvIi~D~~dp~~~~~-----~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDN-----PARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp CCEEEEEEECCCCBSTTC-----GGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccc-----hhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 357999998876643211 11000114567888899998887765543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.92 E-value=0.65 Score=37.50 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=72.2
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|||+|++-+ .++++..+++.|.+.|++|..-.|.... + .++..
T Consensus 18 ~~ksIAVVGaS~~------~~~~g~~v~~~L~~~g~~v~pVnP~~~~--i-------------------------~G~~~ 64 (139)
T d2d59a1 18 RYKKIALVGASPK------PERDANIVMKYLLEHGYDVYPVNPKYEE--V-------------------------LGRKC 64 (139)
T ss_dssp HCCEEEEETCCSC------TTSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEEC
T ss_pred cCCeEEEEeecCC------CCCchHHHHHHHHHCCCEEEEECCcccc--c-------------------------CCCcc
Confidence 4679999998654 4789999999999999999998887532 1 23445
Q ss_pred ecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh---hhhhhcCcEEEE
Q 011641 403 VWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA---NKLREIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~---~~~~~~g~~y~~ 464 (480)
..++.+.-...|++++.++-....++ .+++.+. ..+ .|+=.-+.+++ +.+++.|+.+.|
T Consensus 65 ~~sl~dlp~~iD~v~i~vp~~~~~~~-~~e~~~~-g~k-~v~~~~G~~~ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 65 YPSVLDIPDKIEVVDLFVKPKLTMEY-VEQAIKK-GAK-VVWFQYNTYNREASKKADEAGLIIVA 126 (139)
T ss_dssp BSSGGGCSSCCSEEEECSCHHHHHHH-HHHHHHH-TCS-EEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred cccccccCccceEEEEEeCHHHHHHH-HHHHHHh-CCC-EEEEeccccCHHHHHHHHHCCCEEEc
Confidence 56777755678999998876543332 2333333 333 45556666764 355577887744
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=91.91 E-value=0.6 Score=41.28 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=32.1
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+-|.| .+.+|..+|..|+++ |++|++.+++.++++++.+
T Consensus 8 alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~ 47 (241)
T d2a4ka1 8 ILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVA 47 (241)
T ss_dssp EEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44446 577999999999999 9999999999988766543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=91.87 E-value=0.11 Score=42.18 Aligned_cols=63 Identities=13% Similarity=-0.028 Sum_probs=47.7
Q ss_pred cEEEEECC----ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhc
Q 011641 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ +..|..++..|.+. ||+++.+..++..- .+ .+..+..++.+.-.
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~--g~~~~~v~~~~~~~--------~i--------------~g~~~~~~l~~i~~ 69 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYRVLPVNPRFQGE--------EL--------------FGEEAVASLLDLKE 69 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT--TCEEEEECGGGTTS--------EE--------------TTEECBSSGGGCCS
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC--CCCceEEEeccccc--------ee--------------eceecccchhhccC
Confidence 46999997 78999999999998 99999988754210 00 23566777777446
Q ss_pred cCcEEEEeccC
Q 011641 78 EADIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
..|++++++|.
T Consensus 70 ~iD~v~v~~p~ 80 (136)
T d1iuka_ 70 PVDILDVFRPP 80 (136)
T ss_dssp CCSEEEECSCH
T ss_pred CCceEEEeccH
Confidence 68999999884
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=91.85 E-value=0.096 Score=43.41 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=51.4
Q ss_pred CCCeEEEEeeccCCCCCcccCC-hHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 323 SNKKIAVLGFAFKKDTGDTRET-PAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
++.+|+++| |+++| -+-.++..|...|+++.+..|-.-.. ....+.
T Consensus 2 ~gl~i~~vG--------D~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~-------------------------~~~~~~ 48 (151)
T d2at2a2 2 KGLTVSIHG--------DIKHSRVARSNAEVLTRLGARVLFSGPSEWQD-------------------------EENTFG 48 (151)
T ss_pred CCCEEEEEc--------CCCCCHHHHHHHHHHHHcCCcccccCCchhhc-------------------------ccccee
Confidence 578999998 88887 56678899999999999988842110 113466
Q ss_pred EecCHHhhcccccEEEEEecCcc
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
+..+++++++++|+|...+-+.+
T Consensus 49 ~~~~~~ea~~~aDviy~~r~q~e 71 (151)
T d2at2a2 49 TYVSMDEAVESSDVVMLLRIQNE 71 (151)
T ss_pred EEEechhccccCceeeeeEEEEc
Confidence 78899999999998876444343
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.83 E-value=0.057 Score=44.78 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.||.|||.|+.|.-+|..|++ +.+|+++++.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKE 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEECSS
T ss_pred CeEEEECCcHHHHHHHHHHHc---CCCEEEEecc
Confidence 489999999999999999975 6799999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.83 E-value=0.13 Score=42.19 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=28.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++|.|||.|.+|..-|..|.+. |.+|++++.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~--GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeC
Confidence 4799999999999999999998 899999954
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.81 E-value=1.1 Score=39.96 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=33.4
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++-|.| .+-+|..+|..|+++ |++|++.++++++++.+.
T Consensus 8 ~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~ 47 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECL 47 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 456667 688999999999999 999999999998877654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.72 E-value=0.064 Score=48.01 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=29.3
Q ss_pred cEEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 2 VKICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|||.|| | .+.+|..+|..|++. |++|++.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~--Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECChH
Confidence 777666 5 688999999999998 999999999754
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=91.71 E-value=0.29 Score=40.54 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCC--ChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV--TEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+++.||+++| |+++--+..++..+...|+++.+.-|.. ............ .......
T Consensus 1 l~g~ki~~vG--------D~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~-------------~~~~~~~ 59 (161)
T d1vlva2 1 LKGVKVVFMG--------DTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEI-------------VKETDGS 59 (161)
T ss_dssp STTCEEEEES--------CTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHH-------------HHHHCCE
T ss_pred CCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHH-------------HhhcCCc
Confidence 4788999998 6776678889999999999999988842 222111100000 0001135
Q ss_pred eEEecCHHhhcccccEEEEEecCcc
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
+.+.+++++|++++|+|.. +-|..
T Consensus 60 i~~~~d~~~ai~~aDviyt-~~~q~ 83 (161)
T d1vlva2 60 VSFTSNLEEALAGADVVYT-DVWAS 83 (161)
T ss_dssp EEEESCHHHHHTTCSEEEE-CCCC-
T ss_pred eEEEecHHHhhhhhhheec-cceee
Confidence 8889999999999999987 55643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=91.69 E-value=0.42 Score=42.86 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=66.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhh--ccC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV--SEA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~a 79 (480)
++|.=+|||.-.. +..+++. |.+|+++|++++.++..++... ..++ ..+ ....+..+.. ...
T Consensus 122 ~~VLDiGcGsG~l--~i~aa~~--g~~V~gvDis~~av~~A~~na~---~n~~--------~~~-~~~~d~~~~~~~~~f 185 (254)
T d2nxca1 122 DKVLDLGTGSGVL--AIAAEKL--GGKALGVDIDPMVLPQAEANAK---RNGV--------RPR-FLEGSLEAALPFGPF 185 (254)
T ss_dssp CEEEEETCTTSHH--HHHHHHT--TCEEEEEESCGGGHHHHHHHHH---HTTC--------CCE-EEESCHHHHGGGCCE
T ss_pred CEEEEcccchhHH--HHHHHhc--CCEEEEEECChHHHHHHHHHHH---HcCC--------cee-EEecccccccccccc
Confidence 3566789997443 4456776 8899999999998876653100 0000 011 2334544433 457
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|+|+..... ..+...++.+...+++|..++. |.+.....+.+.+.+++.
T Consensus 186 D~V~ani~~---------------~~l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~ 234 (254)
T d2nxca1 186 DLLVANLYA---------------ELHAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGA 234 (254)
T ss_dssp EEEEEECCH---------------HHHHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHT
T ss_pred chhhhcccc---------------ccHHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHC
Confidence 887755321 2456777888899998877665 444334445566666654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=91.65 E-value=0.12 Score=47.19 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=33.6
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAE--GAKVAVLDKSAERLAELET 47 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 689999999999999 9999999999998876653
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.53 E-value=0.44 Score=39.15 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCCCeEEEEeeccCCCCCcccCCh-HHHHHHHHHhCCCEEEEEcCCCCh--HHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETP-AIDVCKGLLGDKARLSIYDPQVTE--DQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp-~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+++.||+++| |+++|- +-.++..|...|+++.+.-|.... +....... ....
T Consensus 2 l~gl~i~~vG--------D~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-----------------~~~~ 56 (157)
T d1ml4a2 2 IDGLKIGLLG--------DLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELR-----------------EKGM 56 (157)
T ss_dssp SSSEEEEEES--------CTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHH-----------------HTTC
T ss_pred cCCCEEEEEc--------CCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHH-----------------hhcc
Confidence 5789999998 998886 568999999999999998874321 11111110 1123
Q ss_pred ceEEecCHHhhcccccEEEEEecCccccc
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEFKT 427 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~~~ 427 (480)
.+.++.++.++++++|+|.. +-|...+.
T Consensus 57 ~~~~~~d~~~av~~aDvvy~-~~~~~~~~ 84 (157)
T d1ml4a2 57 KVVETTTLEDVIGKLDVLYV-TRIQKERF 84 (157)
T ss_dssp CEEEESCTHHHHTTCSEEEE-CCCCGGGS
T ss_pred cceeecCHHHhhccCcEEEe-eccccccc
Confidence 46778999999999997655 56765554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.52 E-value=0.38 Score=40.00 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=32.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCC-CeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|...++.+... | ..|++.|+++++.+..++
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~--G~~~vi~~~~~~~k~~~ak~ 71 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE 71 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHH--hcCceEEEcccHHHHHHHHH
Confidence 689999999998777766666 6 578899999998887665
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.51 E-value=0.057 Score=48.74 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=30.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||.|+|+ |++|..++..|.++ ||+|++++|++
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL--GHPTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 68999995 99999999999998 99999999864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.61 Score=38.77 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=32.7
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+ |.+|....+..... |.+|++.+.++++.+.+++
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred EEEEEecccccccccccccccc--Ccccccccccccccccccc
Confidence 6899995 99999766655555 8999999999988877765
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.45 E-value=0.91 Score=40.49 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=32.8
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| | .+-+|..+|..|++. |++|+++|+++++++++.
T Consensus 9 K~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~ 49 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECL 49 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 45555 4 678999999999998 999999999998877655
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.054 Score=47.96 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=45.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCC--CeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhcc
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+||.|.| +|++|..+...|.++ | ++|+++.|++.....-. .. .+.. ....+.-..++.+++++
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~~R~~~~~~~~~----------~~-~i~~-~~~D~~~~~~~~~~~~~ 80 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDEEA----------YK-NVNQ-EVVDFEKLDDYASAFQG 80 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCSGG----------GG-GCEE-EECCGGGGGGGGGGGSS
T ss_pred CEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEEecChhhhcccc----------cc-eeee-eeecccccccccccccc
Confidence 5799998 699999999999988 6 58999998653211100 00 0000 00001011245556789
Q ss_pred CcEEEEeccCC
Q 011641 79 ADIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|++|.|+.+.
T Consensus 81 ~d~vi~~~~~~ 91 (232)
T d2bkaa1 81 HDVGFCCLGTT 91 (232)
T ss_dssp CSEEEECCCCC
T ss_pred ccccccccccc
Confidence 99999997643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=91.32 E-value=0.46 Score=43.11 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhh----
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (480)
.+|.|||.|.-+. +..+.++.+..+|.++|+|++.++..++-- +. .-......+++. ..|..+-+
T Consensus 77 ~~vLiiGgG~G~~--~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~-~~-------~~~~~~d~r~~i~~~D~~~~l~~~~ 146 (274)
T d1iy9a_ 77 EHVLVVGGGDGGV--IREILKHPSVKKATLVDIDGKVIEYSKKFL-PS-------IAGKLDDPRVDVQVDDGFMHIAKSE 146 (274)
T ss_dssp CEEEEESCTTCHH--HHHHTTCTTCSEEEEEESCHHHHHHHHHHC-HH-------HHTTTTSTTEEEEESCSHHHHHTCC
T ss_pred ceEEecCCCCcHH--HHHHHhcCCcceEEEecCCHHHHHHHHHhC-hh-------hcccccCCCeEEEechHHHHHhhcC
Confidence 4799999998766 444454322468999999999988766421 00 000011233432 23433323
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH---HHHHHHHHhcCCCCceEEe
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~~g~~~~v~ 153 (480)
+.-|+||+-.+.|... ...+ +-++..+.+...|+++.+++..+..+.... ..+.+.+++.......+..
T Consensus 147 ~~yDvIi~D~~~p~~~-------~~~L-~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~ 218 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPVGP-------AVNL-FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTA 218 (274)
T ss_dssp SCEEEEEESCSSCCSC-------CCCC-STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc-------chhh-ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEE
Confidence 3479999998776532 1111 124567788888999888877665543333 3344445543321223344
Q ss_pred eCCcc
Q 011641 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 219 ~vPsy 223 (274)
T d1iy9a_ 219 NIPTY 223 (274)
T ss_dssp CCTTS
T ss_pred Eeeec
Confidence 56655
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.21 E-value=0.15 Score=45.95 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=33.8
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+.+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAA 47 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56655 5 689999999999998 9999999999988776553
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.20 E-value=0.13 Score=46.47 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=34.9
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 67777 5789999999999999 9999999999988877653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.63 Score=42.40 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=74.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhhc---
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVS--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~--- 77 (480)
.+|.|||+|.-|. +..+.++.+..+|+++|+|++.++..++- .+ .........++++ ..|..+-++
T Consensus 80 k~vLiiGgG~G~~--~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~-~~-------~~~~~~~d~rv~i~~~Da~~~l~~~~ 149 (285)
T d2o07a1 80 RKVLIIGGGDGGV--LREVVKHPSVESVVQCEIDEDVIQVSKKF-LP-------GMAIGYSSSKLTLHVGDGFEFMKQNQ 149 (285)
T ss_dssp CEEEEEECTTSHH--HHHHTTCTTCCEEEEEESCHHHHHHHHHH-CH-------HHHGGGGCTTEEEEESCHHHHHHTCS
T ss_pred CeEEEeCCCchHH--HHHHHHcCCcceeeeccCCHHHHHHHHhh-ch-------hhccccCCCCceEEEccHHHHHhcCC
Confidence 4799999998776 44455542356899999999998877652 11 0000011234443 345444343
Q ss_pred -cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCC---cchHHHHHHHHHhcCCCCceEEe
Q 011641 78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP---VKTAEAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~---~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
..|+||+-++.|... +..-+-.+..+.+...|+++.+++..+..+ +...+.+.+.+++.......+.+
T Consensus 150 ~~yDvIi~D~~~p~~~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~ 221 (285)
T d2o07a1 150 DAFDVIITDSSDPMGP--------AESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYC 221 (285)
T ss_dssp SCEEEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc--------ccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEee
Confidence 469999998766432 111122456788888999888877655433 23333344455543321122334
Q ss_pred eCCcc
Q 011641 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 222 ~vP~~ 226 (285)
T d2o07a1 222 TIPTY 226 (285)
T ss_dssp ECTTS
T ss_pred eeeec
Confidence 45655
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=91.15 E-value=0.63 Score=41.55 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=31.6
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECC-HHHHHHHH
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~ 43 (480)
|+++| |.+.+|..+|..|+++ |++|++.+++ ++..+.+.
T Consensus 5 K~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~ 46 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVR 46 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHH
Confidence 57777 5788999999999998 9999999997 45555544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.09 E-value=0.17 Score=43.52 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+...... .+..|++.|.++++++..++
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhh
Confidence 689999999997666655554 14589999999999988776
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.08 E-value=0.096 Score=49.95 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=29.5
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||.|.| .|++|..++..|.++ ||+|+++|--
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~--g~~V~~iDnl 34 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNL 34 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEecC
Confidence 8999998 699999999999998 9999999943
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=91.07 E-value=0.071 Score=47.69 Aligned_cols=34 Identities=29% Similarity=0.170 Sum_probs=30.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
.|.|||.|..|+..|..++++ |++|.++|.++..
T Consensus 6 DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI 39 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence 399999999999999999998 9999999998643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.14 Score=45.90 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=33.0
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+-|-| .+-+|.++|..|+++ |++|++.|+++++++.+.+
T Consensus 9 alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 9 VVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQ 48 (250)
T ss_dssp EEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 34445 589999999999998 9999999999998877654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=90.94 E-value=0.063 Score=50.39 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.1
Q ss_pred CcEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||||-|.| +|.+|..++..|.++ |++|.++.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~--g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNN--HPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHC--CCCeEEEEE
Confidence 89999998 799999999999998 776555443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.091 Score=46.92 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=32.4
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| | .+.+|..+|..|+++ |++|++.|++++..+.+.
T Consensus 6 KvalITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~ 46 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSGGEAQA 46 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHHHHHHH
Confidence 56655 4 688999999999999 999999999987766544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.76 E-value=0.16 Score=45.25 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++.+.+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 678999999999998 9999999999998877654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=90.72 E-value=1.2 Score=38.11 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=67.5
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++||+|-|+. +-...+++.|.+.|++|.++|+....-.....+ +
T Consensus 23 ~~L~gk~v~IqG~G----------~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~----------------------g 70 (201)
T d1c1da1 23 GSLDGLTVLVQGLG----------AVGGSLASLAAEAGAQLLVADTDTERVAHAVAL----------------------G 70 (201)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----------------------T
T ss_pred CCCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEecchHHHHHHHHhh----------------------c
Confidence 36899999999973 567899999999999999999864432222111 1
Q ss_pred eEEecCHHhhcc-cccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCC-CChh----hhhhcCcEE
Q 011641 400 VSVVWDAYEATK-DAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNV-VDAN----KLREIGFIV 462 (480)
Q Consensus 400 ~~~~~~~~~a~~-~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~-~~~~----~~~~~g~~y 462 (480)
.+.. +.++.+. ++|+++-+.--.. ++.+. .+.++-. +|+-+-|. +.++ .+.+.|+.|
T Consensus 71 ~~~~-~~~~~~~~~~DI~iPcA~~~~---I~~~~-a~~i~ak-~i~e~AN~p~~~~~~~~~L~~rgI~~ 133 (201)
T d1c1da1 71 HTAV-ALEDVLSTPCDVFAPCAMGGV---ITTEV-ARTLDCS-VVAGAANNVIADEAASDILHARGILY 133 (201)
T ss_dssp CEEC-CGGGGGGCCCSEEEECSCSCC---BCHHH-HHHCCCS-EECCSCTTCBCSHHHHHHHHHTTCEE
T ss_pred cccc-Cccccccccceeeeccccccc---ccHHH-Hhhhhhh-eeeccCCCCcchhhHHHHhcccceEE
Confidence 2222 3344444 7897776543333 55544 3455654 89999984 3322 455667766
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.66 E-value=0.16 Score=46.14 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=33.7
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|+++ |++|++.|+++++++++.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQ 47 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 4 688999999999998 9999999999988776653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.60 E-value=0.31 Score=43.50 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=27.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
.+|+|-|.|.||..+|..|.+. |..|++++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~--Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKM--GAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEee
Confidence 4799999999999999999998 89998766
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.56 E-value=0.12 Score=42.46 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=28.4
Q ss_pred EEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 4 ICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 4 I~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+.|+ |.|++|+.+|..|++. |++|+++++.+..
T Consensus 42 vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 42 VVILNADTYFMAPSLAEKLATA--GHEVTIVSGVHLA 76 (156)
T ss_dssp EEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSCTT
T ss_pred eEEEecCCChHHHHHHHHHHHc--CCeEEEEecCCcc
Confidence 4444 9999999999999999 9999999987543
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.51 E-value=0.48 Score=40.22 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=56.2
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCC--hHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVT--EDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
|++++.+|+++| |.++.-+-.++..+...|+++++.-|-.- +++......... ...-
T Consensus 1 k~l~~lkia~vG--------D~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~-------------~~~~ 59 (185)
T d1dxha2 1 KPLHDISYAYLG--------DARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFA-------------EESG 59 (185)
T ss_dssp SCGGGCEEEEES--------CCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHH-------------HHHT
T ss_pred CCCCCCEEEEEc--------CCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHh-------------hccC
Confidence 357889999998 67777889999999999999999988421 111111100000 0001
Q ss_pred cceEEecCHHhhcccccEEEEEecCcc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
..+++.+++++|++++|+|.. +-|..
T Consensus 60 ~~~~~~~d~~eai~~aDvVyt-~~w~~ 85 (185)
T d1dxha2 60 AKLTLTEDPKEAVKGVDFVHT-DVWVS 85 (185)
T ss_dssp CEEEEESCHHHHTTTCSEEEE-CCCSC
T ss_pred CeEEEEeChhhccccccEEEe-ehhhh
Confidence 357788999999999998664 56643
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=90.48 E-value=1.4 Score=38.75 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=33.6
Q ss_pred cEEEEE-C-CChhHHHHHHHHHHcCCCCe-------EEEEECCHHHHHHHHc
Q 011641 2 VKICCI-G-AGYVGGPTMAVIALKCPSIE-------VAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~-------V~~~D~~~~~v~~l~~ 44 (480)
++|.+| | .+-+|..+|..|+++ |++ |+++++++++++.+.+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHH
Confidence 366655 6 578999999999998 876 9999999998877653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=90.48 E-value=0.13 Score=47.97 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=31.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+||-|.| .|++|..++..|.++ |++|+++|++...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~--g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTM--GATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCc
Confidence 6899998 799999999999998 9999999997543
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.46 E-value=0.1 Score=40.93 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=27.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|.-+|..|...+ .|.+|+++++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 47999999999999998776541 256899999754
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.45 E-value=0.58 Score=41.77 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=31.3
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
|+++| | .+-+|..+|..|+++ |++|++.|+++++.+++
T Consensus 10 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~ 49 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEV 49 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 55655 5 677999999999998 99999999998765544
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.42 E-value=0.35 Score=41.19 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=50.0
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCC---CCCcccccceEE
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQ---PMSPTMVKQVSV 402 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 402 (480)
||+|+|++| -.+.++-.| ++|.+|..||..-..-+ .+. ....|+... +........+..
T Consensus 2 kI~ViGlG~----------vGl~~a~~~-a~g~~V~g~Din~~~v~---~l~----~g~~p~~e~~l~~~~~~~~~~~~~ 63 (196)
T d1dlja2 2 KIAVAGSGY----------VGLSLGVLL-SLQNEVTIVDILPSKVD---KIN----NGLSPIQDEYIEYYLKSKQLSIKA 63 (196)
T ss_dssp EEEEECCSH----------HHHHHHHHH-TTTSEEEEECSCHHHHH---HHH----TTCCSSCCHHHHHHHHHSCCCEEE
T ss_pred EEEEECCCh----------hHHHHHHHH-HCCCcEEEEECCHHHHH---HHh----hcccccchhhHHHHhhhhhhhhhc
Confidence 799999999 678888666 57999999998643221 111 001111000 000001133555
Q ss_pred ecCHHhhcccccEEEEEecCcc
Q 011641 403 VWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 403 ~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
..+...+..++|.++++|+-+.
T Consensus 64 ~~~~~~~~~~~~ii~v~vpt~~ 85 (196)
T d1dlja2 64 TLDSKAAYKEAELVIIATPTNY 85 (196)
T ss_dssp ESCHHHHHHHCSEEEECCCCCE
T ss_pred cchhhhhhhccccccccCCccc
Confidence 6677888899999999987764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.31 E-value=0.16 Score=45.64 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=33.9
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 5 678999999999998 9999999999988877653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.26 E-value=0.59 Score=43.18 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=74.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhh----
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (480)
.+|.|||.|.-|. +..+.++.+.-+|.++++|++.++..++- .+.....+ ...++++ ..|..+-+
T Consensus 108 k~VLIiGgG~G~~--~rellk~~~v~~v~~VEID~~Vv~~a~~~-~~~~~~~~-------~dprv~i~i~Da~~~l~~~~ 177 (312)
T d2b2ca1 108 KRVLIIGGGDGGI--LREVLKHESVEKVTMCEIDEMVIDVAKKF-LPGMSCGF-------SHPKLDLFCGDGFEFLKNHK 177 (312)
T ss_dssp CEEEEESCTTSHH--HHHHTTCTTCCEEEEECSCHHHHHHHHHH-CTTTSGGG-------GCTTEEEECSCHHHHHHHCT
T ss_pred CeEEEeCCCchHH--HHHHHHcCCcceEEEEcccHHHHHHHHhh-chhhcccc-------CCCCeEEEEchHHHHHHhCC
Confidence 4799999998776 44455542235899999999998877652 11110001 1234443 33444433
Q ss_pred ccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchH---HHHHHHHHhcCCCCceEEe
Q 011641 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHNSKGIKFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~~g~~~~v~ 153 (480)
+..|+||+-++.|... +..-+-.+..+.+...|+++.+++..+..+.-.. ..+.+.+.+......++..
T Consensus 178 ~~yDvII~D~~dp~~~--------~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~ 249 (312)
T d2b2ca1 178 NEFDVIITDSSDPVGP--------AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS 249 (312)
T ss_dssp TCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc--------chhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeee
Confidence 3479999987766422 1111235567888889999888877665543333 3344444443321223344
Q ss_pred eCCcc
Q 011641 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 250 ~vPty 254 (312)
T d2b2ca1 250 IVSTY 254 (312)
T ss_dssp ECTTS
T ss_pred ccCCc
Confidence 55654
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.24 E-value=0.6 Score=38.70 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=52.9
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCC--ChHHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQV--TEDQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
++++.||+++| |.++ -+-.++..|...|++|.+.-|.. .++++........ .....
T Consensus 1 sl~gl~Ia~VG--------D~~n-v~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~-------------~~~~~ 58 (163)
T d1pvva2 1 TIKGVKVVYVG--------DGNN-VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA-------------AESGG 58 (163)
T ss_dssp CCTTCEEEEES--------CCCH-HHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH-------------HHHTC
T ss_pred CcCCCEEEEEC--------CCcH-HHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh-------------hcccc
Confidence 36899999999 3332 44788888888999999988753 2222211100000 00113
Q ss_pred ceEEecCHHhhcccccEEEEEecCccc
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEWDEF 425 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~~~~ 425 (480)
.++++.++.+|++++|+|. .+-|...
T Consensus 59 ~~~~~~d~~ea~~~adviy-~~~~~~~ 84 (163)
T d1pvva2 59 SFELLHDPVKAVKDADVIY-TDVWASM 84 (163)
T ss_dssp EEEEESCHHHHTTTCSEEE-ECCCCCS
T ss_pred eEEEecCHHHHhhhccEEe-ecceeec
Confidence 5788899999999999776 4666543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=90.20 E-value=0.18 Score=39.40 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=28.5
Q ss_pred cEEEEECCChhHHHHHHHHHHc-CCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALK-CPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|.-+|..|++. ..|.+|+++++.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 4799999999999999877643 1278999999864
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.13 Score=46.02 Aligned_cols=42 Identities=12% Similarity=0.320 Sum_probs=34.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHcC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~ 45 (480)
.||.|||+|.+|+.+|..|+.. |. +++++|-|.=....|++.
T Consensus 31 ~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~Ve~sNL~RQ 73 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVSLSNLQRQ 73 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCCGGGGGTC
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEECCcccchhhhhhh
Confidence 4799999999999999999998 65 799999775555555553
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.13 E-value=0.19 Score=45.70 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 4 678999999999998 9999999999988776553
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=90.02 E-value=0.1 Score=47.32 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=29.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.|.|||.|.-|+..|..|+++ .|++|+++|..+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCC
Confidence 389999999999999999863 3999999998753
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.01 E-value=0.089 Score=44.12 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|..|.-+|..|++. |.+|+++.+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHc--CCceEEEEecC
Confidence 4799999999999999999998 88877776554
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.76 Score=39.14 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=70.2
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHH-----HHhhh---ccccCCCCCCCCCCCCcc
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQI-----QRDLT---MNKFDWDHPLHLQPMSPT 395 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~ 395 (480)
-+||+|+|.+. ....++..+..+|++|.+||+.-...+. .+.+. ..++.. .+.........
T Consensus 4 IkkvaViGaG~----------mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~ 72 (192)
T d1f0ya2 4 VKHVTVIGGGL----------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAE-NPKAGDEFVEK 72 (192)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred eEEEEEECcCH----------HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhc-cchhhHHHHHH
Confidence 36999999754 7889999999999999999997543221 11110 000000 00000000011
Q ss_pred cccceEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChhhhh
Q 011641 396 MVKQVSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLR 456 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~ 456 (480)
....+....+..++++++|.|+=++.=+ +.|.-=++++.+.+++..++.-....+...++.
T Consensus 73 ~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la 134 (192)
T d1f0ya2 73 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 134 (192)
T ss_dssp HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred HHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhh
Confidence 1245788899999999999998765332 222222345555555555666666666654443
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.14 Score=44.25 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=28.7
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
-|.|||.|..|+..|..+++. |.+|.+++.+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMY--GQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence 389999999999999999998 9999999975
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.83 Score=40.98 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=35.1
Q ss_pred cEEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|+|| |.+-+|..+|..|++.+ |..|++++|++++.++..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~ 45 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAV 45 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHH
Confidence 679999 78999999999999742 799999999999877654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.72 E-value=0.22 Score=44.40 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
++-|.| .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 ~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 345557 478999999999998 9999999999998877654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=89.70 E-value=0.29 Score=40.08 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=61.7
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceEEe
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK-ARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVV 403 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
||+++|.. ..+..+++.|.+.| .+|.+||+.-+.-+ +.+++ ++...
T Consensus 2 kI~fIG~G----------~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~ 49 (152)
T d1yqga2 2 NVYFLGGG----------NMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----------------------GVETS 49 (152)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----------------------CCEEE
T ss_pred EEEEEcCc----------HHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----------------------ccccc
Confidence 68899873 47889999888877 99999999754322 22221 35555
Q ss_pred cCHHhhcccccEEEEEecCcccccccHHHHHHhcC-CCCEEEEcCCCCChhhhhh
Q 011641 404 WDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ-KPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 404 ~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~-~~~~viD~~~~~~~~~~~~ 457 (480)
++.+ +++++|+|++++.-..+ ..+.+.++ ...+|+..-.=.+-+.+++
T Consensus 50 ~~~~-~v~~~Div~lavkP~~~-----~~v~~~l~~~~~~viS~~ag~~~~~l~~ 98 (152)
T d1yqga2 50 ATLP-ELHSDDVLILAVKPQDM-----EAACKNIRTNGALVLSVAAGLSVGTLSR 98 (152)
T ss_dssp SSCC-CCCTTSEEEECSCHHHH-----HHHHTTCCCTTCEEEECCTTCCHHHHHH
T ss_pred cccc-cccccceEEEecCHHHH-----HHhHHHHhhcccEEeecccCCCHHHHHH
Confidence 5554 47889999999874333 23333332 2347888777666666654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.69 E-value=0.26 Score=43.86 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=34.0
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
++-|.| .+.+|.++|..|++. |++|++.|+++++++++.+
T Consensus 9 ~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 355556 688999999999998 9999999999998887664
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.61 E-value=0.24 Score=44.42 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=34.4
Q ss_pred EEEEE-C-CChhHHHHHHHHHHc-CCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCI-G-AGYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~ 44 (480)
||+|| | .+-+|..+|..|++. ..|++|++.+|++++++.+.+
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence 78999 5 468999999999961 128999999999998877653
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=89.31 E-value=0.23 Score=44.64 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=33.2
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+-|.| .+-+|..+|..|+++ |++|++.|+++++++.+.+
T Consensus 7 ~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATAR 47 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 345556 568999999999998 9999999999988776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.14 E-value=0.33 Score=43.85 Aligned_cols=95 Identities=9% Similarity=0.113 Sum_probs=54.0
Q ss_pred cEEEEECCCh--hHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHh---
Q 011641 2 VKICCIGAGY--VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH--- 75 (480)
Q Consensus 2 mkI~VIGlG~--~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a--- 75 (480)
|+|.=+|+|. +...+|..+.. +-.|+.+|++++.++..++.. ..... ....++++ ..|..+.
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vgp---~G~V~~~d~~~~~~~~Ar~n~--------~~~~~-~~~~nv~~~~~d~~~~~~~ 165 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVGP---AGQVISYEQRADHAEHARRNV--------SGCYG-QPPDNWRLVVSDLADSELP 165 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHH--------HHHHT-SCCTTEEEECSCGGGCCCC
T ss_pred CEEEecCcCCcHHHHHHHHhhCC---CcEEEEecCCHHHHHHHHHhh--------hhhcc-CCCceEEEEeccccccccc
Confidence 3455566654 44445544444 347999999999888766420 00000 00123332 2233321
Q ss_pred hccCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
-...|.||+-+|.|. .+++.+...|+++..++.
T Consensus 166 ~~~fDaV~ldlp~P~-----------------~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 166 DGSVDRAVLDMLAPW-----------------EVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp TTCEEEEEEESSCGG-----------------GGHHHHHHHEEEEEEEEE
T ss_pred CCCcceEEEecCCHH-----------------HHHHHHHhccCCCCEEEE
Confidence 135799999999874 346677788888776553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.14 E-value=1.2 Score=37.43 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=62.3
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHhh---ccC
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---SEA 79 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---~~a 79 (480)
|.=||||.-+.+++ +++. +.+|+++|++++.++..++... ..+ ...++++ ..|..+.. ..+
T Consensus 37 VLDiGcGsG~~s~~--lA~~--~~~V~avD~~~~~l~~a~~n~~---~~g--------l~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 37 AVDVGCGTGGVTLE--LAGR--VRRVYAIDRNPEAISTTEMNLQ---RHG--------LGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp EEEESCTTSHHHHH--HHTT--SSEEEEEESCHHHHHHHHHHHH---HTT--------CCTTEEEEESCHHHHHTTSCCE
T ss_pred EEEEECCeEccccc--cccc--ceEEEEecCCHHHHHHHHHHHH---HcC--------CCcceEEEECchhhcccccCCc
Confidence 44478877666544 5665 6799999999998887764200 000 0124433 34544432 567
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.|++.-+. ..+...++.+...++++..++.. .....+...+.+.+.+.
T Consensus 102 D~v~~~~~~---------------~~~~~~~~~~~~~LkpgG~lvi~-~~~~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 102 DIAVVGGSG---------------GELQEILRIIKDKLKPGGRIIVT-AILLETKFEAMECLRDL 150 (186)
T ss_dssp EEEEESCCT---------------TCHHHHHHHHHHTEEEEEEEEEE-ECBHHHHHHHHHHHHHT
T ss_pred CEEEEeCcc---------------ccchHHHHHHHHHhCcCCEEEEE-eeccccHHHHHHHHHHc
Confidence 888765321 11356778888888887755432 23333334444555554
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=89.09 E-value=1.7 Score=38.72 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHH-HHHHH
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAW 42 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l 42 (480)
|++|| |.+.+|..+|..|++. |++|++.+++.+ ..+.+
T Consensus 8 K~alITGas~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~ 48 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHH
Confidence 56666 4789999999999998 999999999754 44443
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.08 E-value=0.62 Score=42.51 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=33.5
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEE-----------CCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-----------ISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-----------~~~~~v~~l~~ 44 (480)
++|+|-|.|+||..+|..|.+. |..|++++ +|.+.+..+..
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~--Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~ 88 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRF--GAKCVAVGESDGSIWNPDGIDPKELEDFKL 88 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEEETTEEECCTTCCCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEccchhhccccccchHHHHHHHH
Confidence 4799999999999999999998 89998876 45566655554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.05 E-value=0.25 Score=44.54 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=32.9
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+-|.| .+-+|..+|..|+++ |++|++.+|++++++.+.+
T Consensus 17 alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 17 VIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp EEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44556 567999999999999 9999999999998887653
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=88.99 E-value=0.18 Score=43.49 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=34.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|||.|--|.-++..|.+.+ .+.+.+.+|.|.+.++...
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~ 43 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASN 43 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCC
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCC
Confidence 79999999999999999998762 3467888999988776533
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=88.79 E-value=0.4 Score=42.98 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=51.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHhhccCcE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+||| ++ |....+.+. |.+++++|+|++ .+ . ...+..++.+..||+
T Consensus 123 ~kV~vIG--~~--P~v~~l~~~--~~~~~VlE~~p~------~g-------------------d-~p~~~~~~lLp~aD~ 170 (251)
T d2h1qa1 123 KKVGVVG--HF--PHLESLLEP--ICDLSILEWSPE------EG-------------------D-YPLPASEFILPECDY 170 (251)
T ss_dssp SEEEEES--CC--TTHHHHHTT--TSEEEEEESSCC------TT-------------------C-EEGGGHHHHGGGCSE
T ss_pred CEEEEEe--cc--hhHHHHHhc--CCcEEEEeCCCC------CC-------------------C-CCchHHHHhhhcCCE
Confidence 4899997 45 777777777 899999999863 11 1 122344667899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
+|++=- +.+...++.|..+.++...|+.
T Consensus 171 viiTGs----------------TlvN~Tl~~LL~~~~~a~~vvl 198 (251)
T d2h1qa1 171 VYITCA----------------SVVDKTLPRLLELSRNARRITL 198 (251)
T ss_dssp EEEETH----------------HHHHTCHHHHHHHTTTSSEEEE
T ss_pred EEEEec----------------hhhcCCHHHHHHhCCcCCEEEE
Confidence 998832 2344556777888877654443
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.68 E-value=0.15 Score=46.58 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.|||.|..|+..|..++++ |.+|++++..+
T Consensus 19 VlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~ 49 (308)
T d1y0pa2 19 VVVVGSGGAGFSAAISATDS--GAKVILIEKEP 49 (308)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCcEEEEecCC
Confidence 89999999999999999998 99999999754
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.38 E-value=0.19 Score=43.41 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|.|||.|..|+..|..+++. |.+|+++|.+
T Consensus 6 vvVIGgGpaGl~aA~~aa~~--G~kV~vie~~ 35 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQL--GFKTTCIEKR 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHH--TCCEEEEECS
T ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence 78999999999999999998 9999999975
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.31 E-value=0.16 Score=47.43 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
++|.|+| .|++|..++..|.++ ||+|+++-|+++..
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~--G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGL 40 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSH
T ss_pred CEEEEECCChHHHHHHHHHHHhC--CCeEEEEECCcchh
Confidence 5799999 599999999999998 99999999876543
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.24 E-value=1.2 Score=37.63 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=50.4
Q ss_pred cEEEEEC-C-ChhHHHHHHHHHHcCCCCeEEEEEC-----CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 2 VKICCIG-A-GYVGGPTMAVIALKCPSIEVAVVDI-----SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIG-l-G~~G~~lA~~La~~~~G~~V~~~D~-----~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
.||++|| + -+|..+++..++.- |.+|+++.. +++.++.+.+ ... .....+++++++++
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~--G~~l~l~~P~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~d~~e 70 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKL--GMDVRIAAPKALWPHDEFVAQCKK------------FAE-ESGAKLTLTEDPKE 70 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHT--TCEEEEECCGGGSCCHHHHHHHHH------------HHH-HHTCEEEEESCHHH
T ss_pred CEEEEEcCCcchHHHHHHHHHHHc--CCEEEEEccHHHHhhhHHHHHHHH------------Hhh-ccCCeEEEEeChhh
Confidence 5899999 4 58999999999987 999998875 2333333321 000 12356889999999
Q ss_pred hhccCcEEEEec
Q 011641 75 HVSEADIVFVSV 86 (480)
Q Consensus 75 a~~~aDvVii~V 86 (480)
+++++|+|...+
T Consensus 71 ai~~aDvVyt~~ 82 (185)
T d1dxha2 71 AVKGVDFVHTDV 82 (185)
T ss_dssp HTTTCSEEEECC
T ss_pred ccccccEEEeeh
Confidence 999999887654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.15 E-value=0.32 Score=42.86 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=32.3
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHH
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
++-|.| .+-+|..+|..|++. |++|++.|++++.++..
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~--Ga~V~~~~r~~~~l~~~ 44 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRS 44 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHT
T ss_pred EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHhc
Confidence 455666 578999999999998 99999999999887654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.11 E-value=1.4 Score=39.78 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=66.3
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHh---hc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---VS 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~~ 77 (480)
.+|.|||+|.-+.+. .+.++ +.-+|.++|+|++.++..++- .+.. .+..+........++++ ..|..+- -+
T Consensus 74 ~~vLiiG~G~G~~~~--~~l~~-~~~~v~~VEiD~~Vi~~a~~~-f~~~-~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 74 KRVLVIGGGDGGTVR--EVLQH-DVDEVIMVEIDEDVIMVSKDL-IKID-NGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp CEEEEEECTTSHHHH--HHTTS-CCSEEEEEESCHHHHHHHHHH-TCTT-TTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred ceEEEecCCchHHHH--HHHHh-CCceEEEecCCHHHHHHHHHh-hhhc-cchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 479999999877653 33444 245899999999998876641 1211 11111111111234443 3343322 25
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
.-|+||+-++.|... ...+ +-.+..+.+...|+++.+++..+..+.
T Consensus 149 ~yDvIi~D~~~~~~~-------~~~L-~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGP-------AKVL-FSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp CEEEEEEECCCCC------------T-TSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CCCEEEEeCCCCCCC-------cccc-cCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 679999988766432 1111 114567888889998887766554433
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.10 E-value=0.19 Score=43.61 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|+|||.|.-|+..|..+++. |.+|.++|..+
T Consensus 8 viVIG~GpAGl~aA~~aa~~--G~kV~lie~~~ 38 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQL--GFNTACVEKRG 38 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEEEecC
Confidence 89999999999999999998 99999999753
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.82 E-value=0.26 Score=45.30 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=28.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+||.|.| +|++|..++..|.++ |++|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~--g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 5899998 699999999999998 999999996
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.15 Score=44.82 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=33.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|-.+|||. | ..+..||++ |++|+++|.+++.++..++
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~--G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADR--GHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC-c-HHHHHHHhC--CCcEEEEeCCHHHHHHHHH
Confidence 4789999998 3 568889998 9999999999999987664
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=87.67 E-value=0.21 Score=46.47 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
-|.|||.|.-|+.+|..|+++ |++|++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~--G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGA--GYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhC--CCeEEEEec
Confidence 389999999999999999998 999999985
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.57 E-value=1.1 Score=37.14 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=34.4
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
+|.|.| +|.+|...++..... |.+|++.+.++++.+.+++.
T Consensus 28 ~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~ 69 (183)
T d1pqwa_ 28 RVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL 69 (183)
T ss_dssp EEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT
T ss_pred EEEEECCCCCcccccchhhccc--cccceeeecccccccccccc
Confidence 577878 599999888777666 89999999999999888864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.48 E-value=0.55 Score=37.18 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=62.9
Q ss_pred eEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceEEec
Q 011641 326 KIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVW 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+|.|+|.+. -+..+++.|.+.|.+|.+-|..-..-+ +...++ . .....+.+-.+
T Consensus 2 ~IvI~G~G~----------~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~---~------------~vi~Gd~~~~~ 56 (132)
T d1lssa_ 2 YIIIAGIGR----------VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---A------------LVINGDCTKIK 56 (132)
T ss_dssp EEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---S------------EEEESCTTSHH
T ss_pred EEEEECCCH----------HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh---h------------hhccCcccchh
Confidence 789999754 779999999999999999987432211 111111 0 00000000012
Q ss_pred CHHhh-cccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCChhhhhhcCcE
Q 011641 405 DAYEA-TKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFI 461 (480)
Q Consensus 405 ~~~~a-~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~~~g~~ 461 (480)
.+.++ ++.+|+++.+|+-++- ++-...+...+..+.+|.=..+--..+.+++.|..
T Consensus 57 ~l~~~~i~~a~~vv~~t~~d~~-N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d 113 (132)
T d1lssa_ 57 TLEDAGIEDADMYIAVTGKEEV-NLMSSLLAKSYGINKTIARISEIEYKDVFERLGVD 113 (132)
T ss_dssp HHHHTTTTTCSEEEECCSCHHH-HHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCS
T ss_pred hhhhcChhhhhhhcccCCcHHH-HHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCC
Confidence 23333 5789999999888763 23334445555666566544444334556666653
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.47 E-value=0.2 Score=42.53 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.7
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+|.|||.|..|+.-|..+++. |.+|+++|..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~--g~~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHc--CCcEEEEEee
Confidence 4799999999999999899998 9999999853
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=87.43 E-value=0.21 Score=46.95 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.3
Q ss_pred EEE-EEC-CChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||+ |.| +|++|..++..|.++ |++|+++|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~--g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 566 667 899999999999998 99999999854
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.37 E-value=0.28 Score=39.48 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=28.3
Q ss_pred cEEEEECCChhHHHHHHHHHHc--CCCCeEEEEECCH
Q 011641 2 VKICCIGAGYVGGPTMAVIALK--CPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|.-+|..|++. ..|.+|++++.++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 4799999999999999999631 1278999998754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.24 E-value=2.3 Score=37.73 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=29.9
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCH-HHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAW 42 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~-~~v~~l 42 (480)
|+++| | .+.+|..+|..|+++ |++|++.|++. +.++.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~ 59 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEV 59 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHH
Confidence 55555 4 799999999999999 99999999874 444443
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=87.23 E-value=0.42 Score=42.57 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=51.3
Q ss_pred cceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcCCCCCh------hhhhhcCcEEEEe
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA------NKLREIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~~~~~~------~~~~~~g~~y~~i 465 (480)
.++++++|..|++++||+|+++++-++...--+++|.+.+++..+|+|...+-.. +.+++.|++|.+.
T Consensus 127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~ 200 (242)
T d2b0ja2 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSY 200 (242)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEEC
T ss_pred CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECC
Confidence 3588899999999999999999976654322356788888888899999987542 2344567888655
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.20 E-value=0.34 Score=40.02 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChH
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED 370 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~ 370 (480)
+.++|+|+|.++ .+..+++.|.++|++|.++|......
T Consensus 1 ~~K~IliiGaG~----------~G~~~a~~L~~~g~~V~v~dr~~~~a 38 (182)
T d1e5qa1 1 ATKSVLMLGSGF----------VTRPTLDVLTDSGIKVTVACRTLESA 38 (182)
T ss_dssp CCCEEEEECCST----------THHHHHHHHHTTTCEEEEEESCHHHH
T ss_pred CCCEEEEECCCH----------HHHHHHHHHHhCCCEEEEEECChHHH
Confidence 368999999876 67889999999999999999876543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.14 E-value=0.64 Score=41.64 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=26.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
.+|+|-|.|+||..+|..|.+. |..|+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~--Gakvvav 65 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAEL--GAKAVTL 65 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHH--TCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEE
Confidence 4799999999999999999998 8888764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.11 E-value=0.2 Score=46.10 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+|.|||.|.-|+..|..|+++.+|++|+++|.++.
T Consensus 52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 49999999999999999996545899999998643
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.97 E-value=0.27 Score=42.87 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
-|.|||.|.-|++.|..+++. |++|.+++.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~--G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADE--GLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 389999999999999999998 99999999754
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.92 E-value=0.26 Score=46.10 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=28.1
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
-|-|||.|.-|+.+|..|+++ |++|.++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaea--G~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEA--GVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHC--cCeEEEEec
Confidence 478999999999999999998 999999987
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=86.81 E-value=0.27 Score=40.99 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~--G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARK--GIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHc--CCeEEEEEEe
Confidence 589999999999999888888 9999999863
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=86.78 E-value=1.2 Score=39.68 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=55.8
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHHHhh--cc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHV--SE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~--~~ 78 (480)
++|.=+|+|.-+++++..-+- +++-.|+++|++++.++..++...... ...++++. .|..+.+ ..
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v-~~~g~V~~vD~~e~~~~~A~~n~~~~~-----------~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYAL-NGKGTLTVVERDEDNLKKAMDNLSEFY-----------DIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHH-TTSSEEEEECSCHHHHHHHHHHHHTTS-----------CCTTEEEECSCTTTCCCSCC
T ss_pred CEEEEeeeeCcHHHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHhc-----------CCCceEEEEeeeecccccce
Confidence 467778887765544422221 124589999999998887664210000 01233322 2333322 34
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
.|.|++-+|.|. .+++.+...|++|..++.
T Consensus 155 fD~V~ld~p~p~-----------------~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 155 YDAVIADIPDPW-----------------NHVQKIASMMKPGSVATF 184 (250)
T ss_dssp EEEEEECCSCGG-----------------GSHHHHHHTEEEEEEEEE
T ss_pred eeeeeecCCchH-----------------HHHHHHHHhcCCCceEEE
Confidence 799999887663 346777888888776654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.70 E-value=0.21 Score=48.57 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=33.9
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCC-eEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+||.|||+|.+|..++..|+.. |. +++++|.+.=....|++
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~--Gvg~i~lvD~D~Ve~sNL~R 79 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALS--GFRQIHVIDMDTIDVSNLNR 79 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTT--TCCCEEEECCCBCCGGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCeEEEEECCCcchhhhcc
Confidence 4899999999999999999998 66 79999987544445554
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.64 E-value=0.24 Score=41.84 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|||.|..|+.-|..+++. |.+|+++++..
T Consensus 7 dVvIIGGGpaGl~AA~~~ar~--g~~v~iie~~~ 38 (190)
T d1trba1 7 KLLILGSGPAGYTAAVYAARA--NLQPVLITGME 38 (190)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCCEEECCSS
T ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEEeec
Confidence 699999999999988888887 99999998753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.50 E-value=2.5 Score=35.48 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=65.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCC----CCC-------
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHP----LHL------- 389 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~----~~~------- 389 (480)
.....+|.|+|..- ..+.=++.-..-|+.|.+||-.....+..+.++ ..+..- ...
T Consensus 26 ~V~pa~VvViGaGv----------aG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~---~~~i~~~~~~~~~~~~~~gy 92 (183)
T d1l7da1 26 TVPPARVLVFGVGV----------AGLQAIATAKRLGAVVMATDVRAATKEQVESLG---GKFITVDDEAMKTAETAGGY 92 (183)
T ss_dssp EECCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT---CEECCC--------------
T ss_pred CcCCcEEEEEcCcH----------HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh---cceEEEeccccccccccccc
Confidence 34678999999643 556667777778999999997766533333322 000000 000
Q ss_pred -CCCCcccccceEEecCHHhhcccccEEEEEecCccccc--ccHHHHHHhcCCCCEEEEcC
Q 011641 390 -QPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKT--LDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~--~~~~~~~~~~~~~~~viD~~ 447 (480)
++++.... ....+.+.+.++++|.||-..-.|-=+. +=-++..+.|++..+|||..
T Consensus 93 A~~~s~~~~--~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 93 AKEMGEEFR--KKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp -----------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred hhhcCHHHH--HHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 00000000 0001234566889999998877775443 22367888999988999973
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=86.32 E-value=0.26 Score=41.36 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=33.2
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|-.+|||.-- .|..||++ |++|+++|++++-++..++
T Consensus 22 ~rvLd~GCG~G~--~a~~la~~--G~~V~gvD~S~~~i~~a~~ 60 (201)
T d1pjza_ 22 ARVLVPLCGKSQ--DMSWLSGQ--GYHVVGAELSEAAVERYFT 60 (201)
T ss_dssp CEEEETTTCCSH--HHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred CEEEEecCcCCH--HHHHHHHc--CCceEeecccHHHHHHHHH
Confidence 478899999864 56688988 9999999999999888765
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=86.29 E-value=0.24 Score=45.65 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=29.3
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
-|.|||.|.-|+..|..++++ |++|++++..+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDA--GAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTT--TCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 389999999999999999998 99999999754
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.28 E-value=0.58 Score=43.33 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.8
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|-|.| +|++|..++..|.++ |++|+++|+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~--g~~V~~~d~ 33 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIEN--GYDCVVADN 33 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHC--cCeEEEEEC
Confidence 56666 799999999999998 999999985
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=86.26 E-value=2.6 Score=37.01 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=27.9
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+++| | .+.+|.++|..|++. |++|++.|++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPA 40 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence 45555 5 578999999999998 999999999764
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.81 Score=38.59 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=54.8
Q ss_pred CcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCC--hHHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVT--EDQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
|++++-+|+++| |.|+.-+-.++..+..-|+++++.-|--- ++.+........ ....
T Consensus 1 k~~~~l~i~~vG--------D~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~-------------~~~g 59 (183)
T d1duvg2 1 KAFNEMTLVYAG--------DARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALA-------------QQNG 59 (183)
T ss_dssp CCGGGCEEEEES--------CTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHH-------------HHTT
T ss_pred CCcCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHH-------------HhcC
Confidence 356788999998 77877788889999889999999888421 111111000000 0011
Q ss_pred cceEEecCHHhhcccccEEEEEecCc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
..+.++++++++++++|+|.. +-|.
T Consensus 60 ~~~~~~~d~~~a~~~aDvvyt-~~w~ 84 (183)
T d1duvg2 60 GNITLTEDVAKGVEGADFIYT-DVWV 84 (183)
T ss_dssp CEEEEESCHHHHHTTCSEEEE-CCSS
T ss_pred CceEEEechhhccccCCEEEE-Eehh
Confidence 347788999999999998776 4553
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.33 Score=44.97 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=28.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
.||-|.| +|++|..++..|.++ |++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~--g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEA--GYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence 3699998 699999999999998 999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=86.17 E-value=0.12 Score=42.34 Aligned_cols=87 Identities=7% Similarity=-0.034 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccceEEecCHHhhcccccEEEEEecCc
Q 011641 344 TPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 344 Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
..+..+++.|.+.+..+.+|+-..+..+...+.+ -....+..++++.+|+|+++++.+
T Consensus 9 ~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~DiVil~v~d~ 66 (153)
T d2i76a2 9 TLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY----------------------GGKAATLEKHPELNGVVFVIVPDR 66 (153)
T ss_dssp HHHHHHHHTTC----CCCEECSSHHHHHHHHHHT----------------------CCCCCSSCCCCC---CEEECSCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc----------------------cccccchhhhhccCcEEEEeccch
Confidence 3678889888665554568986544322222111 112346778899999999999877
Q ss_pred ccccccHHHHHHhcC-CCCEEEEcCCCCChhhhhh
Q 011641 424 EFKTLDYQRIYDNMQ-KPAFVFDGRNVVDANKLRE 457 (480)
Q Consensus 424 ~~~~~~~~~~~~~~~-~~~~viD~~~~~~~~~~~~ 457 (480)
.+. ++.+.++ +..+|+|+.+....+.++.
T Consensus 67 ~i~-----~v~~~l~~~~~ivi~~s~~~~~~~l~~ 96 (153)
T d2i76a2 67 YIK-----TVANHLNLGDAVLVHCSGFLSSEIFKK 96 (153)
T ss_dssp THH-----HHHTTTCCSSCCEEECCSSSCGGGGCS
T ss_pred hhh-----HHHhhhcccceeeeecccchhhhhhhh
Confidence 543 4555553 4568999999888766654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.08 E-value=0.3 Score=42.21 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=28.7
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.+++.+
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEecC
Confidence 389999999999999999998 9999999865
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.88 E-value=0.36 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=27.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|||-|.| +|++|..++..|.++. ||+|+++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~-~~~V~~~D~ 35 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDS 35 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhC-CCEEEEEec
Confidence 7999997 6999999999987531 899999994
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.87 E-value=0.4 Score=43.69 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=29.3
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|-|.| +|++|..++..|.++ ||+|+++|+..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~--g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK--GYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 4678887 699999999999998 99999999864
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=85.82 E-value=0.12 Score=43.51 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+|.|||.|..|+.+|..|++. |++|.++.+
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~--g~~v~i~~~ 34 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQA--GYQGLITVV 34 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCSCEEEE
T ss_pred CEEEECccHHHHHHHHHHHhc--CCceEEEEE
Confidence 599999999999999999998 766555543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=85.79 E-value=0.42 Score=42.61 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=30.4
Q ss_pred EEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHH
Q 011641 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
|+++| | .+.+|..+|..|++. |++|++.|++++..+.
T Consensus 6 K~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~ 44 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEV 44 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence 44554 5 789999999999999 9999999999776443
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.72 E-value=0.64 Score=42.84 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=27.8
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++|-|.| +|++|..++..|.++ ||+|+++|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~--g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKL--DQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence 4677777 799999999999998 999999996
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.60 E-value=0.28 Score=42.99 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.6
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+++| |.+.+|..+|..|+++ |++|++.|++++
T Consensus 2 K~alITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~ 36 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKAR--GYRVVVLDLRRE 36 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCcc
Confidence 56666 4689999999999999 999999999865
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.53 E-value=0.27 Score=42.85 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
-|.|||.|.-|+..|..+++. |++|.++|..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~--G~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGG--CCCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 479999999999999999998 9999999854
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=85.38 E-value=1.7 Score=35.60 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=49.2
Q ss_pred cEEEEEC-C-ChhHHHHHHHHHHcCCCCeEEEEECC-----HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 2 VKICCIG-A-GYVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIG-l-G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
.||++|| + ..+-.++...+++- |.+++++-.. ++..+...+ ... -..+.+.+++|+++
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~--g~~i~~~~P~~~~~~~~~~~~~~~------------~~~-~~~~~i~~~~d~~~ 68 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKM--GMNFVACGPEELKPRSDVFKRCQE------------IVK-ETDGSVSFTSNLEE 68 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHT--TCEEEEESCGGGCCCHHHHHHHHH------------HHH-HHCCEEEEESCHHH
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEecchhhhhhhhHHHHHHH------------HHh-hcCCceEEEecHHH
Confidence 5899999 4 57899999888887 8999887542 222222111 000 12356889999999
Q ss_pred hhccCcEEEEecc
Q 011641 75 HVSEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
+++++|+|....-
T Consensus 69 ai~~aDviyt~~~ 81 (161)
T d1vlva2 69 ALAGADVVYTDVW 81 (161)
T ss_dssp HHTTCSEEEECCC
T ss_pred hhhhhhheeccce
Confidence 9999999987643
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.30 E-value=0.41 Score=41.08 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+.|||.|..|+..|..+++. |.+|.++|.+
T Consensus 6 viIIG~GpaG~~aA~~aar~--G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAEL--GARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence 78999999999999999998 9999999974
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.09 E-value=0.39 Score=45.10 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.6
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCe-EEEEECC
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIE-VAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~-V~~~D~~ 35 (480)
|||-|.| +|.+|..++..|.++ |++ |+++|..
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~--g~~vv~~~d~~ 34 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKN--TQDTVVNIDKL 34 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH--CSCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence 8999998 699999999999998 886 6677753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.05 E-value=2.2 Score=36.89 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=58.6
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEE-ecCHHHh-h-ccC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH-V-SEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-~-~~a 79 (480)
+|.=||||. |. ++..|+++ |++|+|+|.+++-++..++.. .. ...++++ ..|.++. . ...
T Consensus 44 ~iLDiGcGt-G~-~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~------------~~-~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 44 RVLDLACGT-GI-PTLELAER--GYEVVGLDLHEEMLRVARRKA------------KE-RNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp EEEEETCTT-CH-HHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------HH-TTCCCEEEESCGGGCCCCSCE
T ss_pred EEEEeCCCC-Cc-cchhhccc--ceEEEEEeecccccccccccc------------cc-ccccchheehhhhhccccccc
Confidence 578899997 33 35568888 899999999998887665420 00 0012222 2333321 1 245
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
|+|+++-.+- ...+......+++.+...|++|.++++
T Consensus 107 D~I~~~~~~~---------~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 107 DAVTMFFSTI---------MYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp EEEEECSSGG---------GGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred chHhhhhhhh---------hcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 7766542211 123334567889999999998876654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.81 E-value=2.5 Score=35.71 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=55.9
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh---hccC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSEA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~a 79 (480)
+|.=||||.-. ++..|++. |.+|+++|++++.++..++.. ... .........|..+. -...
T Consensus 40 ~ILDiGcG~G~--~~~~la~~--~~~v~giD~S~~~i~~ak~~~-----------~~~-~~~~~~~~~d~~~l~~~~~~f 103 (226)
T d1ve3a1 40 KVLDLACGVGG--FSFLLEDY--GFEVVGVDISEDMIRKAREYA-----------KSR-ESNVEFIVGDARKLSFEDKTF 103 (226)
T ss_dssp EEEEETCTTSH--HHHHHHHT--TCEEEEEESCHHHHHHHHHHH-----------HHT-TCCCEEEECCTTSCCSCTTCE
T ss_pred EEEEECCCcch--hhhhHhhh--hcccccccccccchhhhhhhh-----------ccc-cccccccccccccccccCcCc
Confidence 68889999855 45678887 899999999999887665310 000 00001122332221 1345
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEE
Q 011641 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
|+|+.. -. .. ......+..+++.+...|++|..+++
T Consensus 104 D~I~~~-~~-l~--------~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 104 DYVIFI-DS-IV--------HFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp EEEEEE-SC-GG--------GCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEe-cc-hh--------hCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 776644 22 11 11223456789999999998765433
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=84.81 E-value=1.7 Score=38.53 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=28.1
Q ss_pred EEEEECC-C--hhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIGA-G--YVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGl-G--~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++-|.|. | .+|.++|..|+++ |++|++.+++++
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~--Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNES 42 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 4667775 5 5999999999998 999999999864
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=1.8 Score=35.69 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=51.0
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCCh--HHHHHhhhccccCCCCCCCCCCCCccccc
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTE--DQIQRDLTMNKFDWDHPLHLQPMSPTMVK 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
++++.+|+++| |.|+ -+..+++.|...|+++.+.-|.... .+........ ......
T Consensus 1 sl~gl~I~~vG--------D~~n-V~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~-------------~~~~~~ 58 (170)
T d1otha2 1 SLKGLTLSWIG--------DGNN-ILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQY-------------AKENGT 58 (170)
T ss_dssp CCTTCEEEEES--------CSSH-HHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHH-------------HHHHTC
T ss_pred CCCCCEEEEEc--------Cchh-HHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHH-------------HhccCC
Confidence 36899999998 5654 4467777777789999988775331 1111110000 000013
Q ss_pred ceEEecCHHhhcccccEEEEEecC
Q 011641 399 QVSVVWDAYEATKDAHGVCILTEW 422 (480)
Q Consensus 399 ~~~~~~~~~~a~~~ad~vvi~t~~ 422 (480)
.+++.+++.++++++|++..-+-.
T Consensus 59 ~i~~~~d~~~~~~~advi~~~~~~ 82 (170)
T d1otha2 59 KLLLTNDPLEAAHGGNVLITDTWI 82 (170)
T ss_dssp CEEEESCHHHHHTTCSEEEECCSS
T ss_pred EEEEEcCHHHHHhhhhheeeecee
Confidence 478889999999999999885433
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.47 E-value=0.48 Score=43.45 Aligned_cols=31 Identities=19% Similarity=0.041 Sum_probs=27.0
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
++-|.| +|++|..++..|.++ ||+|+++|+.
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~--g~~V~~~~r~ 34 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGK--GYEVHGLIRR 34 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred EEEEeCCccHHHHHHHHHHHHC--cCEEEEEECC
Confidence 455566 799999999999998 9999999984
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.37 E-value=0.48 Score=40.51 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=28.4
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.+++..
T Consensus 5 DviVIG~GpaGl~aA~~aar~--G~kV~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEecC
Confidence 378999999999999999998 9999999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=84.25 E-value=4.4 Score=34.45 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=67.4
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEe-cCHH---Hhh--c
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVE---KHV--S 77 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~---~a~--~ 77 (480)
|-=||||.-...+. ||++.|+..++|+|+++..+..+.+.. .+....++++. .|.. +.+ .
T Consensus 33 vLeIGcG~G~~~~~--lA~~~p~~~~iGiD~~~~~i~~a~~~~------------~~~~l~Nv~~~~~Da~~l~~~~~~~ 98 (204)
T d2fcaa1 33 HIEVGTGKGQFISG--MAKQNPDINYIGIELFKSVIVTAVQKV------------KDSEAQNVKLLNIDADTLTDVFEPG 98 (204)
T ss_dssp EEEECCTTSHHHHH--HHHHCTTSEEEEECSCHHHHHHHHHHH------------HHSCCSSEEEECCCGGGHHHHCCTT
T ss_pred EEEEEecCcHHHHH--HHHhCCCCcEEEeecchHHHHHHHHHH------------HHHhccCchhcccchhhhhcccCch
Confidence 45589998665443 566567899999999998887665310 00001234432 2222 112 3
Q ss_pred cCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhCCCCcEEEEecCCCcchHHHHHHHHHhc
Q 011641 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|.|++.-|.|..... +..--+ .-.+.++.+...|++|.++.+.|- .....+.+.+.+.+.
T Consensus 99 ~~d~v~i~fp~P~~k~~---h~k~Rl-~~~~~l~~~~r~LkpgG~l~i~TD-~~~y~~~~~~~~~~~ 160 (204)
T d2fcaa1 99 EVKRVYLNFSDPWPKKR---HEKRRL-TYSHFLKKYEEVMGKGGSIHFKTD-NRGLFEYSLKSFSEY 160 (204)
T ss_dssp SCCEEEEESCCCCCSGG---GGGGST-TSHHHHHHHHHHHTTSCEEEEEES-CHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchhh---hcchhh-hHHHHHHHHHHhCCCCcEEEEEEC-ChHHHHHHHHHHHHC
Confidence 47888888888753210 000000 003567788888899887766542 233344455555543
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.22 E-value=0.44 Score=41.44 Aligned_cols=42 Identities=14% Similarity=0.303 Sum_probs=34.1
Q ss_pred cEEEEECCChhHHHHHHHHHHcC-CCCeEEEEECCHHHHHHHH
Q 011641 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISVSRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~~~v~~l~ 43 (480)
.||.|||.|.-|.-++..|.+.+ .+.+.+.+|.|.+.+....
T Consensus 16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~ 58 (209)
T d2vapa1 16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTK 58 (209)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSC
T ss_pred CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCC
Confidence 58999999999999999998773 3457788899888776543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=84.21 E-value=0.49 Score=43.13 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=27.4
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||-|.| +|++|..++..|.++ |++|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~--g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ--GIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence 788887 799999999999998 999999984
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=84.12 E-value=4.7 Score=35.08 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=30.5
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEEE-CCHHHHHHHH
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~ 43 (480)
+|++| |.+.+|..+|..|+++ |++|++.+ ++++..+.+.
T Consensus 2 pV~lITGas~GIG~a~a~~la~~--Ga~V~i~~~~~~~~~~~~~ 43 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVS 43 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHH
Confidence 46666 4788999999999998 99998865 5666666554
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.09 E-value=0.47 Score=43.77 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.9
Q ss_pred cEEE-EEC-CChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 2 VKIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+ |.| +|++|..++..|.++ ||+|+++|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~--g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEK--GYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 4785 666 799999999999998 99999999954
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.08 E-value=0.93 Score=37.98 Aligned_cols=88 Identities=23% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCCh-HHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTE-DQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++|+|+|- .|....=+..|+..|++|.+==---+. .+..+ .+++
T Consensus 14 ik~k~IaViGY----------GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~----------------------~~Gf 61 (182)
T d1np3a2 14 IQGKKVAIIGY----------GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE----------------------AHGL 61 (182)
T ss_dssp HHTSCEEEECC----------SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH----------------------HTTC
T ss_pred HCCCEEEEEee----------CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh----------------------hhcc
Confidence 36889999994 577788888899999999984332222 12211 1344
Q ss_pred EEecCHHhhcccccEEEEEecCcccccccH-HHHHHhcCCCCEE
Q 011641 401 SVVWDAYEATKDAHGVCILTEWDEFKTLDY-QRIYDNMQKPAFV 443 (480)
Q Consensus 401 ~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~-~~~~~~~~~~~~v 443 (480)
++ .+.+||++.||+|+++++- +...--| +.+...|+....+
T Consensus 62 ~v-~~~~eA~~~aDiim~L~PD-~~q~~vy~~~I~p~lk~g~~L 103 (182)
T d1np3a2 62 KV-ADVKTAVAAADVVMILTPD-EFQGRLYKEEIEPNLKKGATL 103 (182)
T ss_dssp EE-ECHHHHHHTCSEEEECSCH-HHHHHHHHHHTGGGCCTTCEE
T ss_pred cc-ccHHHHhhhcCeeeeecch-HHHHHHHHHhhhhhcCCCcEE
Confidence 44 4799999999999999883 3222224 3577777654333
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=83.84 E-value=2.2 Score=35.32 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=31.4
Q ss_pred EEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHcC
Q 011641 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD 45 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~ 45 (480)
+|.|.|+ |.+|....+..... |.+|++.++++++.+.+++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~ 73 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI 73 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT
T ss_pred EEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhh
Confidence 5778887 55777555544454 89999999999999988864
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=83.60 E-value=0.42 Score=44.71 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=27.5
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEEC
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+-|||.|.-|+.+|..|+++ |++|+++++
T Consensus 10 vIVVGsG~aG~v~A~rLaea--G~~VlvLEa 38 (370)
T d3coxa1 10 ALVIGSGYGGAVAALRLTQA--GIPTQIVEM 38 (370)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCeEEEEeC
Confidence 78999999999999999998 999999986
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=83.35 E-value=2.5 Score=37.36 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=31.5
Q ss_pred cEEEEE--CCChhHHHHHHHHHHcCCCCeEEEEEC-CHHHHHHHH
Q 011641 2 VKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWN 43 (480)
Q Consensus 2 mkI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~ 43 (480)
|-|+|| |.+-+|..+|..|+++ |++|++.++ +++..+++.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHH
Confidence 558888 5678999999999998 999988665 555555554
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=83.30 E-value=1.8 Score=35.33 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=50.8
Q ss_pred CCCCeEEEEeeccCCCCCcccCC-hHHHHHHHHHhCC-CEEEEEcCCCCh--HHHHHhhhccccCCCCCCCCCCCCcccc
Q 011641 322 VSNKKIAVLGFAFKKDTGDTRET-PAIDVCKGLLGDK-ARLSIYDPQVTE--DQIQRDLTMNKFDWDHPLHLQPMSPTMV 397 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g-~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.+|+++| |+++| -+-.++..|...| ..+.+.-|..-. +....... ..-
T Consensus 2 l~gl~i~~vG--------D~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~-----------------~~~ 56 (160)
T d1ekxa2 2 LDNLHVAMVG--------DLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLD-----------------EKG 56 (160)
T ss_dssp SSSCEEEEES--------CTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHH-----------------HTT
T ss_pred CCCCEEEEEc--------CCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHh-----------------hhc
Confidence 5788999998 99998 5567888888885 667776664321 11111110 011
Q ss_pred cceEEecCHHhhcccccEEEEEecCc
Q 011641 398 KQVSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
..+.+++++.++++++|+|.. +.|.
T Consensus 57 ~~~~~~~d~~~a~~~aDvvy~-~~~~ 81 (160)
T d1ekxa2 57 IAWSLHSSIEEVMAEVDILYM-TRVQ 81 (160)
T ss_dssp CCEEECSCSTTTGGGCSEEEE-CCCC
T ss_pred cccccccCHHHHhCcCceEEe-eccc
Confidence 346778899999999998865 4454
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=82.94 E-value=0.52 Score=40.00 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=65.2
Q ss_pred CCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCC----cccccc
Q 011641 324 NKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMS----PTMVKQ 399 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 399 (480)
-+||+|+|.+. ....++..+..+|++|.+||+.-...+ +.+......|.+........ ......
T Consensus 4 I~~vaViGaG~----------mG~~iA~~~a~~G~~V~l~D~~~~~l~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (186)
T d1wdka3 4 VKQAAVLGAGI----------MGGGIAYQSASKGTPILMKDINEHGIE--QGLAEAAKLLVGRVDKGRMTPAKMAEVLNG 71 (186)
T ss_dssp CSSEEEECCHH----------HHHHHHHHHHHTTCCEEEECSSHHHHH--HHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCEEEEECcCH----------HHHHHHHHHHhCCCeEEEEECCHHHHh--hhhhhhhhhHHhhhcccccchhhhhhhhce
Confidence 46899999765 778899999999999999999644321 11100000000000000000 111234
Q ss_pred eEEecCHHhhcccccEEEEEecCc-ccccccHHHHHHhcCCCCEEEEcCCCCChhhhh
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD-EFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~-~~~~~~~~~~~~~~~~~~~viD~~~~~~~~~~~ 456 (480)
+....+ .+++.++|.|+-...=+ +.|.--+.+|.+..++..++.-....+...++.
T Consensus 72 i~~~~~-~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la 128 (186)
T d1wdka3 72 IRPTLS-YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLA 128 (186)
T ss_dssp EEEESS-STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHG
T ss_pred eecccc-cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHH
Confidence 655544 45689999998765443 122212345555555555666666666654443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=82.81 E-value=1.2 Score=37.62 Aligned_cols=117 Identities=17% Similarity=0.032 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCcCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChH-HHHHhhhccccCCCCCC
Q 011641 309 RFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTED-QIQRDLTMNKFDWDHPL 387 (480)
Q Consensus 309 ~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~ 387 (480)
..+..+.+.++.++++++|.|.|-+= .-...+++.|.++|++|.+.+=..+.. +....+.. ...
T Consensus 8 ~~v~~~~~~~~~~l~gK~vlItGasg---------GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~---- 72 (191)
T d1luaa1 8 AGVALVVKAAGGSVKGKKAVVLAGTG---------PVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK--RFK---- 72 (191)
T ss_dssp HHHHHHHHHTTSCCTTCEEEEETTTS---------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH--HHT----
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCH---------HHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHh--ccc----
Confidence 34566777788899999999999532 357899999999999999987654332 11122110 000
Q ss_pred CCCCCCcccccceEEecCHHhhcccccEEEEEecCcccccccHHHHHHhcCCCCEEEEcC
Q 011641 388 HLQPMSPTMVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~~~~~~~~~~~~~~~~~~~~~~viD~~ 447 (480)
.....-++.-..+..+++.++|+||-.+.= -+..++.+.+...+... ++.|..
T Consensus 73 -----~~~~~~d~~~~~~~~~~~~~iDilin~Ag~-g~~~~~~e~~~~~~~~n-v~~~~~ 125 (191)
T d1luaa1 73 -----VNVTAAETADDASRAEAVKGAHFVFTAGAI-GLELLPQAAWQNESSIE-IVADYN 125 (191)
T ss_dssp -----CCCEEEECCSHHHHHHHTTTCSEEEECCCT-TCCCBCHHHHHTCTTCC-EEEECC
T ss_pred -----hhhhhhhcccHHHHHHHhcCcCeeeecCcc-ccccCCHHHHHhhhcce-eehhHh
Confidence 000001111124566778899988765542 24456666766555544 555543
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=82.76 E-value=0.51 Score=40.33 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|.|||.|.-|+..|..+++. |.+|.++|..
T Consensus 6 viIIGgGpAGl~aA~~aar~--G~~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQL--GLKTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 78999999999999999998 9999999964
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=82.72 E-value=1.3 Score=36.14 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred eEEEEeeccCCCCCcccCChHHH-HHHHHHhC-CCEE-EEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccceE
Q 011641 326 KIAVLGFAFKKDTGDTRETPAID-VCKGLLGD-KARL-SIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQVS 401 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~-l~~~L~~~-g~~V-~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
||+|+|.+. .+.. .+..|... ++++ -++||...... ....+ ++.
T Consensus 3 ri~iIG~G~----------~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~----------------------~~~ 50 (164)
T d1tlta1 3 RIGVVGLGG----------IAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------------------RIP 50 (164)
T ss_dssp EEEEECCST----------HHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------------------TCC
T ss_pred EEEEEcCCH----------HHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc----------------------ccc
Confidence 899999753 3333 35556654 7775 47999765432 22222 244
Q ss_pred EecCHHhhcccccEEEEEecCcc
Q 011641 402 VVWDAYEATKDAHGVCILTEWDE 424 (480)
Q Consensus 402 ~~~~~~~a~~~ad~vvi~t~~~~ 424 (480)
+.++.++.+++.|+|+|+|+++.
T Consensus 51 ~~~~~~~l~~~~D~V~I~tp~~~ 73 (164)
T d1tlta1 51 YADSLSSLAASCDAVFVHSSTAS 73 (164)
T ss_dssp BCSSHHHHHTTCSEEEECSCTTH
T ss_pred ccccchhhhhhcccccccccchh
Confidence 56788888899999999999875
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.34 E-value=2.7 Score=34.36 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=46.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEEC-----CHHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHHh
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI-----SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~-----~~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||++||- ..|..+++..+..- |.+|+++.. +++.++.+.+. .....+.+..+.|+.++
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~--g~~v~~~~P~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~~ea 69 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKL--GADVVVATPEGYEPDEKVIKWAEQN-------------AAESGGSFELLHDPVKA 69 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHT--TCEEEEECCTTCCCCHHHHHHHHHH-------------HHHHTCEEEEESCHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEecccccCCChHHHHHHHHh-------------hhcccceEEEecCHHHH
Confidence 48999995 45667777777776 899998754 33333333221 00113467889999999
Q ss_pred hccCcEEEEe
Q 011641 76 VSEADIVFVS 85 (480)
Q Consensus 76 ~~~aDvVii~ 85 (480)
++++|+|...
T Consensus 70 ~~~adviy~~ 79 (163)
T d1pvva2 70 VKDADVIYTD 79 (163)
T ss_dssp TTTCSEEEEC
T ss_pred hhhccEEeec
Confidence 9999988754
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.24 E-value=1.4 Score=35.70 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCC--CEEEEEcCCCChHH-HHHhhhccccCCCCCCCCCCCCcccccc
Q 011641 323 SNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDK--ARLSIYDPQVTEDQ-IQRDLTMNKFDWDHPLHLQPMSPTMVKQ 399 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g--~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++||+|+|.++ -...++-.|...| -++..||..-+..+ ...++. +. .......
T Consensus 5 ~~~KI~IiGaG~----------vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~--~~-----------~~~~~~~ 61 (148)
T d1ldna1 5 GGARVVVIGAGF----------VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFN--HG-----------KVFAPKP 61 (148)
T ss_dssp TSCEEEEECCSH----------HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH--HH-----------TTSSSSC
T ss_pred CCCeEEEECcCH----------HHHHHHHHHHhcCCCceEEEEeeccccccchhccHh--hC-----------ccccCCC
Confidence 578999999644 2345555566655 48999996432211 111111 00 0011123
Q ss_pred eEEecCHHhhcccccEEEEEecCc
Q 011641 400 VSVVWDAYEATKDAHGVCILTEWD 423 (480)
Q Consensus 400 ~~~~~~~~~a~~~ad~vvi~t~~~ 423 (480)
..+..+.++++++||++|+...-+
T Consensus 62 ~~~~~~d~~~l~daDvvvitag~~ 85 (148)
T d1ldna1 62 VDIWHGDYDDCRDADLVVICAGAN 85 (148)
T ss_dssp CEEEECCGGGTTTCSEEEECCSCC
T ss_pred eEEEECCHHHhccceeEEEecccc
Confidence 445566789999999999976654
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.14 E-value=0.44 Score=45.28 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=29.4
Q ss_pred EEEEECCChhHHHHHHHHHH------cCCCCeEEEEECCHH
Q 011641 3 KICCIGAGYVGGPTMAVIAL------KCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~------~~~G~~V~~~D~~~~ 37 (480)
-|.|||.|.-|++.|..||+ + |++|.++|+..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~--Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEK--DLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTC--CCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcC--CCEEEEEcCCCC
Confidence 38999999999999999997 5 999999998754
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=82.11 E-value=2.6 Score=37.19 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=27.0
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHHHHHH
Q 011641 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
|-|-| .+.+|..+|..|+++ |.+|++.+++.++.+.
T Consensus 8 vlITGgs~GIG~~~A~~la~~--G~~vii~~r~~~~~~~ 44 (254)
T d1sbya1 8 VIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTA 44 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--CCSEEEEEESSCCHHH
T ss_pred EEEecCCCHHHHHHHHHHHHC--CCEEEEEECCcccHHH
Confidence 44555 567999999999999 9998888765544333
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.08 E-value=6 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.7
Q ss_pred EEEE--CCChhHHHHHHHHHHcCCCCeEEEEECCHHH
Q 011641 4 ICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (480)
Q Consensus 4 I~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|| |.+.+|..+|..|+++ |++|++.|++.+.
T Consensus 3 vAlVTGas~GIG~aia~~la~~--G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchH
Confidence 4555 4677999999999999 9999999998654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.68 E-value=0.5 Score=43.36 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=29.2
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECCH
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||.|..|+..|..++++ |.+|++++..+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKA--GANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 489999999999999999998 99999999753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.57 E-value=3.8 Score=35.82 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=28.0
Q ss_pred EEEECC-C--hhHHHHHHHHHHcCCCCeEEEEECCHHHHH
Q 011641 4 ICCIGA-G--YVGGPTMAVIALKCPSIEVAVVDISVSRIN 40 (480)
Q Consensus 4 I~VIGl-G--~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
+-|-|+ | -+|..+|..|++. |++|++.+++++..+
T Consensus 11 alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~ 48 (256)
T d1ulua_ 11 ALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRP 48 (256)
T ss_dssp EEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGGHH
T ss_pred EEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHH
Confidence 455575 4 5999999999998 999999999865433
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=81.46 E-value=0.75 Score=40.82 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=31.3
Q ss_pred EEEEECC-Ch--hHHHHHHHHHHcCCCCeEEEEECCHHHH-HHHH
Q 011641 3 KICCIGA-GY--VGGPTMAVIALKCPSIEVAVVDISVSRI-NAWN 43 (480)
Q Consensus 3 kI~VIGl-G~--~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~ 43 (480)
++-|.|+ |. +|.++|..|+++ |++|++.+++.++. +.+.
T Consensus 8 ~~lItGaag~~GIG~aiA~~la~~--Ga~Vil~~~~~~~~~~~~~ 50 (268)
T d2h7ma1 8 RILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLRLIQRIT 50 (268)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHHT--TCEEEEEECSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHH
Confidence 5667785 64 999999999998 99999999988765 3344
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.36 E-value=1.5 Score=36.65 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=59.2
Q ss_pred cCCCCeEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEcCCCChHHHHHhhhccccCCCCCCCCCCCCcccccce
Q 011641 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTMVKQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
++++++|.|+|=+. --..+|+.+|.++|+.|...+=....+ ... ...+ ..+...-..+
T Consensus 26 ~l~GK~vvVIGrS~---------iVG~Pla~lL~~~gaTVt~~~~~~~~~-~~~-----~~~~-------~~~~~~~~~~ 83 (171)
T d1edza1 26 RLYGKKCIVINRSE---------IVGRPLAALLANDGATVYSVDVNNIQK-FTR-----GESL-------KLNKHHVEDL 83 (171)
T ss_dssp TTTTCEEEEECCCT---------TTHHHHHHHHHTTSCEEEEECSSEEEE-EES-----CCCS-------SCCCCEEEEE
T ss_pred CCCCCEEEEECCcc---------ccHHHHHHHHHHCCCEEEEeccccccc-ccc-----ccce-------eeeeeccccc
Confidence 68999999999422 347889999999999999877332110 000 0000 0000001111
Q ss_pred EE--ecCHHhhcccccEEEEEecCcccc-cccHHHHHHhcCCCCEEEEcC
Q 011641 401 SV--VWDAYEATKDAHGVCILTEWDEFK-TLDYQRIYDNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~--~~~~~~a~~~ad~vvi~t~~~~~~-~~~~~~~~~~~~~~~~viD~~ 447 (480)
.. .+.+.+.+..||++|..+..+.|+ .-| ..+...+|||.-
T Consensus 84 ~~~~~~~lk~~~~~aDIvIsavG~p~~~i~~d------~ik~GavvIDvG 127 (171)
T d1edza1 84 GEYSEDLLKKCSLDSDVVITGVPSENYKFPTE------YIKEGAVCINFA 127 (171)
T ss_dssp EECCHHHHHHHHHHCSEEEECCCCTTCCBCTT------TSCTTEEEEECS
T ss_pred cccchhHHhhccccCCEEEEccCCCccccChh------hcccCceEeecc
Confidence 11 123567778999999999999883 222 224456899974
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.13 E-value=2.1 Score=37.72 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.4
Q ss_pred cEEEEECCChhHHHHHHHHHHcCCCCeEEEE
Q 011641 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++|+|-|.|.||..+|..|++.. |..|+.+
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~-G~kvv~v 62 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDF-GMKVVAV 62 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-Ccceeec
Confidence 57999999999999999987532 7777654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.08 E-value=0.9 Score=40.41 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=29.8
Q ss_pred EEEEE--CCChhHHHHHHHHHHcCCCCeEEEE-ECCHHHHHHHH
Q 011641 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~ 43 (480)
|+++| |.+.+|..+|..|++. |++|++. +++++..+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~ 48 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVV 48 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHH
Confidence 45555 5788999999999999 9999875 56666555544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.06 E-value=0.6 Score=40.92 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=29.5
Q ss_pred EEEEEC-CChhHHHHHHHHHHcCCCCeEEEEECCHH
Q 011641 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||-|.| .|-+|..+|..|+++ |++|++.|++++
T Consensus 4 kVlITGas~GIG~aia~~l~~~--G~~V~~~~~~~~ 37 (235)
T d1ooea_ 4 KVIVYGGKGALGSAILEFFKKN--GYTVLNIDLSAN 37 (235)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence 788887 589999999999998 999999999754
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=80.93 E-value=0.21 Score=45.98 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.1
Q ss_pred cEEEEEC-CChhHHHHHHHHHHcCCCCeE
Q 011641 2 VKICCIG-AGYVGGPTMAVIALKCPSIEV 29 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V 29 (480)
|||-|.| +|++|..++..|.++ |++|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~--g~~v 27 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAG--AYPD 27 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--SCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCc
Confidence 8999998 799999999999998 7754
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=80.60 E-value=0.63 Score=43.59 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=28.1
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
-+.|||.|.-|+.+|..|+++ |++|.+++.-
T Consensus 4 D~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEA--GKKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhC--CCeEEEEEcc
Confidence 378999999999999999998 8999999863
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=80.56 E-value=3.1 Score=34.65 Aligned_cols=71 Identities=21% Similarity=0.392 Sum_probs=49.4
Q ss_pred cEEEEECCC--hhHHHHHHHHHHcCCCCeEEEEECC-----HHHHHHHHcCCCCCcCCChHHHHhhhcCCCEEEecCHHH
Q 011641 2 VKICCIGAG--YVGGPTMAVIALKCPSIEVAVVDIS-----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG--~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
.||++||=| .|..+++..++.- |.+++++-.. ++..+.+++ .. ......+.++.++++
T Consensus 6 l~i~~vGD~~nnv~~Sli~~~~~~--g~~l~~~~P~~~~~~~~~~~~~~~------------~~-~~~g~~~~~~~d~~~ 70 (183)
T d1duvg2 6 MTLVYAGDARNNMGNSMLEAAALT--GLDLRLVAPQACWPEAALVTECRA------------LA-QQNGGNITLTEDVAK 70 (183)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHH--CCEEEEECCGGGCCCHHHHHHHHH------------HH-HHTTCEEEEESCHHH
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEEechHhhhhHHHHHHHHH------------HH-HhcCCceEEEechhh
Confidence 589999944 7999999999987 8999987652 222222211 00 012346789999999
Q ss_pred hhccCcEEEEecc
Q 011641 75 HVSEADIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
+++++|+|...+=
T Consensus 71 a~~~aDvvyt~~w 83 (183)
T d1duvg2 71 GVEGADFIYTDVW 83 (183)
T ss_dssp HHTTCSEEEECCS
T ss_pred ccccCCEEEEEeh
Confidence 9999999886643
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.31 E-value=1.2 Score=31.99 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=31.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHcCCCCeEEEEECCHHHHHHHHc
Q 011641 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
++|.|.|. |.+|....+.+... |++|++...++++.+.+++
T Consensus 33 ~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 33 GEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH
T ss_pred CcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence 35778764 99999766655555 9999999999998887764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=80.06 E-value=0.83 Score=40.42 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=28.8
Q ss_pred EEEEECCChhHHHHHHHHHHcCCCCeEEEEECC
Q 011641 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+.|||.|.-|...|..+++. |.+|.++|.+
T Consensus 3 DviVIG~G~aG~~aA~~aa~~--G~~V~liE~~ 33 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARH--NAKVALVEKS 33 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 478999999999999999998 9999999975
|