Citrus Sinensis ID: 011649

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MRILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRTRTALPQGPGKVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNFKKTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN
cccHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccccEEEEEEEccccEEEEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEEEEEEEEccccccccccccEEEEEccccccccccccEEEEcccccccccccccccEEEEEccccccccEEEEEccccccccccEEEEEccccccccccEEEEEEEEEEccEEEcccccccccccEEEEcccccEEccHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
ccHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccEEEEcccccccccccccccccccccccccccccHHHHHccccccccccccccccccEEEEEEccccccEEEEEEEEEEEcccccccccccccEEEEccccccccccccccEEccccccccccccccccEEEEEEccccccccEEEEcccccccccccEEEEEEEccccccEEEEEEEEEEEccEEEEcccHHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccEEEccEEEEEEEccEEEEcccccEEEEEcccEEEEEEEcccccccEEEEEEEEEcEEEEEEEccccEEEEcccccc
MRILFKAFLLFIWLLRssnngayandndlshSYIVSvsslipptvcnrtrtalpqgpgkvslevlgrygpcsklnqgksrntpsLEEILRRDQQRLHLKNSRRLQKaipdnfkktkaftfpaktgivaadEYYIVVAIGKPKQYVSLLLDtgsgitwtqckpcihcsqqrdpffdpsksktfskipcnsttckillewfppngqdkcsskecpydiayvdgsgetgfwaTDRMTIQEvngngyfarypfllgctdnntgdqngasgimgldrgpvsiiskTNISYFFYClhspygstgyitfgkpdtvnkkfvkytpivttpeqseFYHITLTGisvggerlplkasyFTKLsteidsgtiitrfpapvYSALRSAFRKRMKKYKMGKGIEDLFDtcydlsayktvvvPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFallpsdpnsillgnvqqrgyevhydvagrrlgfgpgncn
MRILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRtrtalpqgpgkvSLEVLGRYgpcsklnqgksrntpslEEILRRDqqrlhlknsrrlqkaipdnfkktkaftfpaktgivAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPivttpeqsefYHITLTgisvggerlPLKASYFTKLsteidsgtiitrfpapvySALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFallpsdpnsILLGNVQQRGYEVHYDVAGRrlgfgpgncn
MRILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRTRTALPQGPGKVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNfkktkaftfpaktGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFrkrmkkykmgkgIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN
**ILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRTRTALP***GKVSLEVLGRYG*****************************************NFKKTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFD****KTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGF******
*RILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIP*********************VLGRYG******************ILRR*********************************GIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLE*********CSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHS**************TV*KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRM*********EDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNC*
MRILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRTRTALPQGPGKVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNFKKTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN
MRILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPP***************KVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQK**********AFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNC*
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oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRILFKAFLLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRTRTALPQGPGKVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNFKKTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFYCLHSPYGSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.727 0.698 0.326 7e-46
Q766C3437 Aspartic proteinase nepen N/A no 0.743 0.816 0.312 6e-45
Q766C2438 Aspartic proteinase nepen N/A no 0.806 0.883 0.304 5e-44
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.785 0.802 0.313 7e-41
Q6XBF8437 Aspartic proteinase CDR1 no no 0.789 0.867 0.325 3e-38
Q3EBM5447 Probable aspartic proteas no no 0.831 0.892 0.295 1e-31
Q9LZL3453 Aspartic proteinase PCS1 no no 0.679 0.719 0.265 9e-25
Q9S9K4475 Aspartic proteinase-like no no 0.691 0.698 0.280 2e-23
Q9LX20528 Aspartic proteinase-like no no 0.764 0.695 0.244 2e-11
Q0IU52410 Aspartic proteinase Asp1 no no 0.689 0.807 0.255 2e-09
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 190/383 (49%), Gaps = 34/383 (8%)

Query: 110 DNFKKTKAFTFPAKTGIV-AADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQ 168
           D   +T+  T P  +G    + EY+  + +G P + + L+LDTGS + W QC+PC  C Q
Sbjct: 139 DTRYQTEDLTTPVVSGASQGSGEYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCADCYQ 198

Query: 169 QRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFW 228
           Q DP F+P+ S T+  + C++  C +L           C S +C Y ++Y DGS   G  
Sbjct: 199 QSDPVFNPTSSSTYKSLTCSAPQCSLL-------ETSACRSNKCLYQVSYGDGSFTVGEL 251

Query: 229 ATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISYFFY 288
           ATD +T          A     LGC  +N G   GA+G++GL  G +SI ++   + F Y
Sbjct: 252 ATDTVTFGNSGKINNVA-----LGCGHDNEGLFTGAAGLLGLGGGVLSITNQMKATSFSY 306

Query: 289 CLHSPYGSTGYITFGKPDTVNKKFVKY------TPIVTTPEQSEFYHITLTGISVGGERL 342
           CL            GK  +++   V+        P++   +   FY++ L+G SVGGE++
Sbjct: 307 CLVDRDS-------GKSSSLDFNSVQLGGGDATAPLLRNKKIDTFYYVGLSGFSVGGEKV 359

Query: 343 PLKASYFTKLSTE-----IDSGTIITRFPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTC 397
            L  + F   ++      +D GT +TR     Y++LR AF K     K G     LFDTC
Sbjct: 360 VLPDAIFDVDASGSGGVILDCGTAVTRLQTQAYNSLRDAFLKLTVNLKKGSSSISLFDTC 419

Query: 398 YDLSAYKTVVVPKITIHFLGGVDLELDVRGTLV-VESVRQVCLGFALLPSDPNSILLGNV 456
           YD S+  TV VP +  HF GG  L+L  +  L+ V+     C  FA  P+  +  ++GNV
Sbjct: 420 YDFSSLSTVKVPTVAFHFTGGKSLDLPAKNYLIPVDDSGTFCFAFA--PTSSSLSIIGNV 477

Query: 457 QQRGYEVHYDVAGRRLGFGPGNC 479
           QQ+G  + YD++   +G     C
Sbjct: 478 QQQGTRITYDLSKNVIGLSGNKC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
356527091482 PREDICTED: aspartic proteinase nepenthes 0.925 0.921 0.410 3e-88
356524287481 PREDICTED: aspartic proteinase nepenthes 0.925 0.923 0.411 5e-87
224092220473 predicted protein [Populus trichocarpa] 0.947 0.961 0.390 8e-87
225430555481 PREDICTED: aspartic proteinase nepenthes 0.964 0.962 0.388 8e-86
225430551490 PREDICTED: aspartic proteinase nepenthes 0.966 0.946 0.389 6e-84
22326716474 aspartyl protease family protein [Arabid 0.856 0.867 0.405 1e-83
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.952 0.962 0.383 1e-83
8979711446 nucleoid DNA-binding protein cnd41-like 0.852 0.917 0.404 3e-83
356527089488 PREDICTED: aspartic proteinase nepenthes 0.841 0.827 0.421 1e-82
356567196490 PREDICTED: aspartic proteinase nepenthes 0.835 0.818 0.419 4e-82
>gi|356527091|ref|XP_003532147.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/468 (41%), Positives = 273/468 (58%), Gaps = 24/468 (5%)

Query: 22  AYANDNDLSHSYIVSVSSLIPPTVCNRTRTALPQGPG-KVSLEVLGRYGPCSKLNQ-GKS 79
           A    N+L   + V ++SL P +    + ++  +GP  K SLEV+ ++GPCS+LN  GK+
Sbjct: 30  ATKESNNLRQYHFVHLNSLFPSS----SCSSSAKGPKRKASLEVVHKHGPCSQLNHSGKA 85

Query: 80  RNTPSLEEILRRDQQRLHLKNSRRLQKAIPDN-FKKTKAFTFPAKTG-IVAADEYYIVVA 137
             T S  +I+  D +R+    SR  +    +N  K+  + T PAK+G ++ + +YY+VV 
Sbjct: 86  EATISHNDIMNLDNERVKYIQSRLSKNLGGENRVKELDSTTLPAKSGRLIGSADYYVVVG 145

Query: 138 IGKPKQYVSLLLDTGSGITWTQCKPCI-HCSQQRDPFFDPSKSKTFSKIPCNSTTCKILL 196
           +G PK+ +SL+ DTGS +TWTQC+PC   C +Q+DP FDPSKS +++ I C S+ C    
Sbjct: 146 LGTPKRDLSLIFDTGSYLTWTQCEPCAGSCYKQQDPIFDPSKSSSYTNIKCTSSLCT--- 202

Query: 197 EWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDN 256
             F   G    +   C YD+ Y D S   GF + +R+TI   +       + FL GC  +
Sbjct: 203 -QFRSAGCSSSTDASCIYDVKYGDNSISRGFLSQERLTITATD-----IVHDFLFGCGQD 256

Query: 257 NTGDQNGASGIMGLDRGPVSIISKTNISY---FFYCLHSPYGSTGYITFGKPDTVNKKFV 313
           N G   G +G+MGL R P+S + +T+  Y   F YCL S   S G++TFG     N   +
Sbjct: 257 NEGLFRGTAGLMGLSRHPISFVQQTSSIYNKIFSYCLPSTPSSLGHLTFGASAATNAN-L 315

Query: 314 KYTPIVTTPEQSEFYHITLTGISVGGERLP-LKASYFTKLSTEIDSGTIITRFPAPVYSA 372
           KYTP  T   ++ FY + + GISVGG +LP + +S F+   + IDSGT+ITR P   Y+A
Sbjct: 316 KYTPFSTISGENSFYGLDIVGISVGGTKLPAVSSSTFSAGGSIIDSGTVITRLPPTAYAA 375

Query: 373 LRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVE 432
           LRSAFR+ M KY +  G   L DTCYD S YK + VP+I   F GGV +EL + G L  E
Sbjct: 376 LRSAFRQFMMKYPVAYGTR-LLDTCYDFSGYKEISVPRIDFEFAGGVKVELPLVGILYGE 434

Query: 433 SVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
           S +Q+CL FA   +  +  + GNVQQ+  EV YDV G R+GFG   CN
Sbjct: 435 SAQQLCLAFAANGNGNDITIFGNVQQKTLEVVYDVEGGRIGFGAAGCN 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356524287|ref|XP_003530761.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224092220|ref|XP_002309515.1| predicted protein [Populus trichocarpa] gi|222855491|gb|EEE93038.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356567196|ref|XP_003551807.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.95 0.962 0.374 8.7e-79
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.893 0.924 0.370 2.9e-64
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.793 0.785 0.344 4.8e-55
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.675 0.670 0.386 1.3e-52
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.7 0.694 0.355 7.2e-52
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.681 0.677 0.356 5.1e-51
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.693 0.666 0.331 6.7e-49
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.775 0.791 0.318 7.7e-48
TAIR|locus:2057831396 AT2G28010 [Arabidopsis thalian 0.560 0.679 0.299 1.6e-43
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.693 0.762 0.345 5.7e-43
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 179/478 (37%), Positives = 260/478 (54%)

Query:     9 LLFIWLLRSSNNGAYANDNDLSHSYIVSVSSLIPPTVCNRTRTALPQGPG-KVSLEVLGR 67
             +L I L    N+GA   + D SH+  + VSSL+P +  + +    P+    K SL V  R
Sbjct:    13 ILCICLNLGCNDGAQERETD-SHT--IQVSSLLPSS--SSSCVLSPRASTTKSSLHVTHR 67

Query:    68 YGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNXXXXXXXXXXXXXG-I 126
             +G CS+LN GK+  +P   EILR DQ R++  +S+  +K   D+             G  
Sbjct:    68 HGTCSRLNNGKA-TSPDHVEILRLDQARVNSIHSKLSKKLATDHVSESKSTDLPAKDGST 126

Query:   127 VAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIH-CSQQRDPFFDPSKSKTFSKI 185
             + +  Y + V +G PK  +SL+ DTGS +TWTQC+PC+  C  Q++P F+PSKS ++  +
Sbjct:   127 LGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYYNV 186

Query:   186 PCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFA 245
              C+S  C  L           CS+  C Y I Y D S   GF A ++ T+   N + +  
Sbjct:   187 SCSSAACGSLSS--ATGNAGSCSASNCIYGIQYGDQSFSVGFLAKEKFTL--TNSDVFDG 242

Query:   246 RYPFLLGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISY---FFYCLHSPYGSTGYITF 302
              Y    GC +NN G   G +G++GL R  +S  S+T  +Y   F YCL S    TG++TF
Sbjct:   243 VY---FGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASYTGHLTF 299

Query:   303 GKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTII 362
             G       + VK+TPI T  + + FY + +  I+VGG++LP+ ++ F+     IDSGT+I
Sbjct:   300 GSAGI--SRSVKFTPISTITDGTSFYGLNIVAITVGGQKLPIPSTVFSTPGALIDSGTVI 357

Query:   363 TRFPAPVYSALRSAFXXXXXXXXXXXXIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLE 422
             TR P   Y+ALRS+F            +  + DTC+DLS +KTV +PK+   F GG  +E
Sbjct:   358 TRLPPKAYAALRSSFKAKMSKYPTTSGVS-ILDTCFDLSGFKTVTIPKVAFSFSGGAVVE 416

Query:   423 LDVRGTLVVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
             L  +G   V  + QVCL FA    D N+ + GNVQQ+  EV YD AG R+GF P  C+
Sbjct:   417 LGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.41LOW CONFIDENCE prediction!
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00061654
hypothetical protein (473 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 4e-94
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 6e-65
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 4e-60
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 9e-44
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 9e-29
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 1e-26
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-19
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-18
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-14
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 3e-08
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-07
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 4e-07
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-05
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 6e-05
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 0.001
cd05487326 cd05487, renin_like, Renin stimulates production o 0.003
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  286 bits (735), Expect = 4e-94
 Identities = 134/354 (37%), Positives = 181/354 (51%), Gaps = 60/354 (16%)

Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNST 190
           EY + V +G P +  ++++DTGS +TW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 191 TCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFL 250
                                C Y ++Y DGS  TG  ATD +T+             F 
Sbjct: 34  ---------------------CLYQVSYGDGSYTTGDLATDTLTL-----GSSDVVPGFA 67

Query: 251 LGCTDNNTGDQNGASGIMGLDRGPVSIISKTNISY---FFYCL-HSPYGSTGYITFGKPD 306
            GC  +N G   GA+G++GL RG +S+ S+T  SY   F YCL      S+GY++FG   
Sbjct: 68  FGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAA- 126

Query: 307 TVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFP 366
                   +TP+++ P    FY++ LTGISVGG RLP+  + F      IDSGT+ITR P
Sbjct: 127 ASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLP 186

Query: 367 APVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVR 426
              Y+ALR AFR  M  Y    G   + DTCYDLS +++V VP +++HF GG D+ELD  
Sbjct: 187 PSAYAALRDAFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDAS 245

Query: 427 GTL-VVESVRQVCLGFALLPSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNC 479
           G L  V+   QVCL FA    D    ++GNVQQ+ + V YDVAG R+GF PG C
Sbjct: 246 GVLYPVDDSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.64
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.49
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 94.18
PF1365090 Asp_protease_2: Aspartyl protease 93.95
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 92.74
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 89.9
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 89.88
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 89.21
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 83.37
PF1365090 Asp_protease_2: Aspartyl protease 83.33
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 82.96
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 82.54
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 80.04
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-76  Score=617.04  Aligned_cols=396  Identities=32%  Similarity=0.575  Sum_probs=327.3

Q ss_pred             CCceEEEEecCcCCCCCCCCCCCCCCccHHHHHHHhHHhHhhhhhhhhcccCCCCcccCcceeeceeecCC-CCeeEEEE
Q 011649           57 PGKVSLEVLGRYGPCSKLNQGKSRNTPSLEEILRRDQQRLHLKNSRRLQKAIPDNFKKTKAFTFPAKTGIV-AADEYYIV  135 (480)
Q Consensus        57 ~~~~~~~l~hr~~~~sp~~~~~~~~~~~~~~~l~~d~~R~~~l~~~r~~~~~~~~~~~~~~~~~p~~~g~~-~~~~Y~~~  135 (480)
                      +++++++|+||++||||++++..+..+.++++++|+++|++++. ++...            ..|+..+.. ++++|+++
T Consensus        22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~------------~~~~~~~~~~~~~~Y~v~   88 (431)
T PLN03146         22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFR-PTDAS------------PNDPQSDLISNGGEYLMN   88 (431)
T ss_pred             CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh-hcccc------------CCccccCcccCCccEEEE
Confidence            36799999999999999865544455788999999999998886 44211            123333333 78899999


Q ss_pred             EEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCC-CCCCcc
Q 011649          136 VAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCS-SKECPY  214 (480)
Q Consensus       136 i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~-~~~c~y  214 (480)
                      |+||||+|++.|++||||+++||||.+|..|+.|..+.|||++|+||+.++|+++.|+.+..      ...|. ++.|.|
T Consensus        89 i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~------~~~c~~~~~c~y  162 (431)
T PLN03146         89 ISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN------QASCSDENTCTY  162 (431)
T ss_pred             EEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC------CCCCCCCCCCee
Confidence            99999999999999999999999999999999988899999999999999999999987652      23475 456999


Q ss_pred             eeeecCCCcEEEEEEEEEEEEeecCCCcccccCCeEEEEEecCCCCC-CCCCceeecCCCCccceeecccce---eEEEe
Q 011649          215 DIAYVDGSGETGFWATDRMTIQEVNGNGYFARYPFLLGCTDNNTGDQ-NGASGIMGLDRGPVSIISKTNISY---FFYCL  290 (480)
Q Consensus       215 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~---FS~cL  290 (480)
                      .+.|+||+.+.|++++|+|+|++.... .+.++++.|||++.+.+.| ...+||||||++++|+++|+....   |||||
T Consensus       163 ~i~Ygdgs~~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL  241 (431)
T PLN03146        163 SYSYGDGSFTKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL  241 (431)
T ss_pred             EEEeCCCCceeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence            999999988899999999999874311 1122899999999998877 358999999999999999987533   99999


Q ss_pred             cCCC---CCceeEEeCCCCCcCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccC---CCCEEEecCCccee
Q 011649          291 HSPY---GSTGYITFGKPDTVNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFT---KLSTEIDSGTIITR  364 (480)
Q Consensus       291 ~~~~---~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~---~~~~iiDSGT~~t~  364 (480)
                      ++..   ...|.|+||+.......++.||||+.+.. +.+|+|+|++|+||+++++++...|.   .+++||||||++|+
T Consensus       242 ~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~  320 (431)
T PLN03146        242 VPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTL  320 (431)
T ss_pred             CCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCcccee
Confidence            7632   24799999996422234589999986432 57999999999999999988776652   36899999999999


Q ss_pred             ccHHHHHHHHHHHHHHhhhccCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEEeC
Q 011649          365 FPAPVYSALRSAFRKRMKKYKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFALL  444 (480)
Q Consensus       365 Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~  444 (480)
                      ||+++|++|+++|.+.+...+..... ..+++||+...  ...+|+|+|+|+ |+++.|++++|+++...+..|+++...
T Consensus       321 Lp~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~  396 (431)
T PLN03146        321 LPSDFYSELESAVEEAIGGERVSDPQ-GLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPT  396 (431)
T ss_pred             cCHHHHHHHHHHHHHHhccccCCCCC-CCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecC
Confidence            99999999999999998643333333 45789998543  257899999998 499999999999988777899998865


Q ss_pred             CCCCCeeeechhhhceeEEEEeCCCCEEEEeeCCCC
Q 011649          445 PSDPNSILLGNVQQRGYEVHYDVAGRRLGFGPGNCN  480 (480)
Q Consensus       445 ~~~~~~~IlG~~f~~~~~vvfD~~~~riGFa~~~C~  480 (480)
                      .   +.+|||+.|||++||+||++++||||++.+|+
T Consensus       397 ~---~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        397 S---SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             C---CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            3   36999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 4e-09
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 7e-09
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 2e-08
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 2e-06
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 6e-06
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 9e-06
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 1e-05
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 4e-04
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 4e-04
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 5e-04
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 5e-04
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 6e-04
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 6e-04
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 6e-04
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 6e-04
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-04
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 6e-04
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 6e-04
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 6e-04
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 6e-04
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 6e-04
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 6e-04
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 6e-04
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 6e-04
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 7e-04
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 7e-04
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 7e-04
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 7e-04
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 7e-04
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 7e-04
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 7e-04
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 7e-04
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 7e-04
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 7e-04
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 7e-04
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 7e-04
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 7e-04
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 7e-04
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 7e-04
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 7e-04
2qu2_A415 Bace1 With Compound 1 Length = 415 7e-04
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 8e-04
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 8e-04
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 8e-04
3tpj_A433 Apo Structure Of Bace1 Length = 433 8e-04
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 8e-04
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 127/368 (34%), Gaps = 60/368 (16%)
Query: 145 VSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPN-- 202
            SL+LD    + W+ CK                  +  ++IPC+S TC +   +  P   
Sbjct: 24  ASLVLDVAGPLVWSTCK----------------GGQPPAEIPCSSPTCLLANAYPAPGCP 67
Query: 203 ----GQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGNGYFARY--PFLLGCTDN 256
               G DK       Y    V G+   G  +  R      +G+   ++     L  C  +
Sbjct: 68  APSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPS 127
Query: 257 N--TGDQNGASGIMGLDRG----PVSIISKTNIS-YFFYCLHSPYGSTGYITFGKPDTVN 309
                   G++G+ GL       P  + S   ++  F  CL  P G  G   FG      
Sbjct: 128 KLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCL--PTGGPGVAIFGGGPVPW 185
Query: 310 KKFVK---YTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFP 366
            +F +   YTP+VT    S  ++I+   I VG  R+P+           + +        
Sbjct: 186 PQFTQSMPYTPLVTK-GGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLR 244
Query: 367 APVYSALRSAFXXXXXXXXX-------XXXIEDLFDTCYD-------LSAYKTVVVPKIT 412
             VY  L  AF                       F  CYD       L  Y    VP + 
Sbjct: 245 PDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGY---AVPNVQ 301
Query: 413 IHFLGGVDLELDVRGTLVVESVRQVCLGFALLPS------DPNSILLGNVQQRGYEVHYD 466
           +   GG D  +  + ++V       C+ F  +           +++LG  Q   + + +D
Sbjct: 302 LGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFD 361
Query: 467 VAGRRLGF 474
           +  +RLGF
Sbjct: 362 MEKKRLGF 369
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 8e-86
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 1e-77
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-74
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 3e-26
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-25
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-25
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 5e-25
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 7e-25
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-24
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 3e-23
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 7e-21
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-18
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-17
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 7e-17
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-16
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 1e-16
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 3e-16
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 5e-16
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 5e-16
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 8e-16
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-15
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 3e-15
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 3e-15
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 8e-15
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 8e-15
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-14
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-14
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-14
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 5e-14
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 6e-14
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 8e-14
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 3e-12
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 6e-10
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  268 bits (686), Expect = 8e-86
 Identities = 65/398 (16%), Positives = 118/398 (29%), Gaps = 42/398 (10%)

Query: 112 FKKTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRD 171
            K       P      +   ++  +    P   V +L+D      W  C+        + 
Sbjct: 4   TKPINLVVLPV-QNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQA 62

Query: 172 PFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECP-YDIAYVDGSGETGFWAT 230
           PF   ++    +   C S              +  C    C       +      G    
Sbjct: 63  PFCHSTQCSRANTHQCLSCPA---------ASRPGCHKNTCGLMSTNPITQQTGLGELGE 113

Query: 231 DRMTIQEVNGNGYFARYP-----FLLGCTDNNTGDQ---NGASGIMGLDRGPVSIISKTN 282
           D + I    G+            FL  C  +    +       G+ GL   P+S+ ++  
Sbjct: 114 DVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLA 173

Query: 283 ISY-----FFYCLHSPYGSTGYITFG--------KPDTVNKKFVKYTPIVTTPEQSEFYH 329
             +     F  CL     S G I FG          +      + +TP+  T +    Y+
Sbjct: 174 SHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQG--EYN 231

Query: 330 ITLTGISVGGERLPLKASYFTKLSTE------IDSGTIITRFPAPVYSALRSAFRKRMKK 383
           + +  I +    +       + +         I + T        VY A    F +++ K
Sbjct: 232 VRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPK 291

Query: 384 YKMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCLGFAL 443
               K +   F  C++ +         + +    G    +     +V       CLG   
Sbjct: 292 QAQVKSVAP-FGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMN 350

Query: 444 LPSDPNS-ILLGNVQQRGYEVHYDVAGRRLGFGPGNCN 480
               P + I LG  Q     V +D+A  R+GF   + +
Sbjct: 351 GGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.6
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 91.19
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 91.01
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 80.67
2hs1_A99 HIV-1 protease; ultra-high resolution active site 80.39
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.1e-63  Score=516.01  Aligned_cols=349  Identities=22%  Similarity=0.373  Sum_probs=286.9

Q ss_pred             cCcceeeceeecCCCCeeEEEEEEecCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCccccccCCCcccc
Q 011649          114 KTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCK  193 (480)
Q Consensus       114 ~~~~~~~p~~~g~~~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~  193 (480)
                      ..+++.+|++... .+++|+++|.||||+|++.|+|||||+++||+|.+|             .+|+||+.++|.++.|.
T Consensus         5 ~~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~   70 (413)
T 3vla_A            5 RPSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCS   70 (413)
T ss_dssp             CCSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHH
T ss_pred             CCccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCccccc
Confidence            3557889998743 689999999999999999999999999999999976             37999999999999998


Q ss_pred             ccccCCC----CCCCCCCCCCCCcceeee-cCCCcEEEEEEEEEEEEeecCCCc---ccccCCeEEEEEecC--CCCCCC
Q 011649          194 ILLEWFP----PNGQDKCSSKECPYDIAY-VDGSGETGFWATDRMTIQEVNGNG---YFARYPFLLGCTDNN--TGDQNG  263 (480)
Q Consensus       194 ~~~~~~~----~~~~~~C~~~~c~y~~~Y-gdgs~~~G~~~~Dtltl~~~~~~~---~~~~~~~~FGc~~~~--~g~~~~  263 (480)
                      .......    ......|.++.|.|.+.| +|++.+.|++++|+|+|++.+.+.   .+.++++.|||++.+  .+.+..
T Consensus        71 ~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~  150 (413)
T 3vla_A           71 LSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASG  150 (413)
T ss_dssp             HTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTT
T ss_pred             ccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccc
Confidence            7652000    001235666779999999 588789999999999998532210   123389999999986  455678


Q ss_pred             CCceeecCCCCccceeecccc-----eeEEEecCCCCCceeEEeCCCCC-c-----CCCC-cEEeeceeCCCC-------
Q 011649          264 ASGIMGLDRGPVSIISKTNIS-----YFFYCLHSPYGSTGYITFGKPDT-V-----NKKF-VKYTPIVTTPEQ-------  324 (480)
Q Consensus       264 ~~GilGLg~~~~Sl~sQl~~~-----~FS~cL~~~~~~~G~L~fGg~d~-~-----~~~~-~~~tpl~~~~~~-------  324 (480)
                      ++||||||++++|+++|+..+     .|||||++.....|.|+||+.|. .     +.++ +.||||+.++..       
T Consensus       151 ~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~  230 (413)
T 3vla_A          151 VVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQ  230 (413)
T ss_dssp             CCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCT
T ss_pred             cccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccc
Confidence            999999999999999998863     29999998655689999999875 2     4667 999999986532       


Q ss_pred             ---CeeEEEEEeeEEEcceEeecCccccC-----CCCEEEecCCcceeccHHHHHHHHHHHHHHhh--hccCCCCccccc
Q 011649          325 ---SEFYHITLTGISVGGERLPLKASYFT-----KLSTEIDSGTIITRFPAPVYSALRSAFRKRMK--KYKMGKGIEDLF  394 (480)
Q Consensus       325 ---~~~y~v~l~gIsVgg~~l~i~~~~~~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~~~~~~  394 (480)
                         ..+|+|+|++|+||++.+.+++..|.     .+++||||||++|+||+++|++|+++|.+++.  +++...+. ..+
T Consensus       231 ~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-~~~  309 (413)
T 3vla_A          231 GEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-APF  309 (413)
T ss_dssp             TCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCC-TTC
T ss_pred             cCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCC-CCC
Confidence               27999999999999999998877663     36899999999999999999999999999875  34444333 567


Q ss_pred             ccceecCCCcc----cccceEEEEEcC-CcEEEecCCCeEEEeCCCeEEEEEEeCCCC-CCeeeechhhhceeEEEEeCC
Q 011649          395 DTCYDLSAYKT----VVVPKITIHFLG-GVDLELDVRGTLVVESVRQVCLGFALLPSD-PNSILLGNVQQRGYEVHYDVA  468 (480)
Q Consensus       395 ~~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~f~~~~~vvfD~~  468 (480)
                      +.||+.++...    ..+|+|+|+|+| +++|+|++++|+++.+++..|++|...... .+.||||++|||++|+|||++
T Consensus       310 ~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~  389 (413)
T 3vla_A          310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLA  389 (413)
T ss_dssp             SCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETT
T ss_pred             cceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECC
Confidence            89999876432    579999999987 589999999999987667899998876432 257999999999999999999


Q ss_pred             CCEEEEeeC
Q 011649          469 GRRLGFGPG  477 (480)
Q Consensus       469 ~~riGFa~~  477 (480)
                      ++|||||++
T Consensus       390 ~~riGfa~~  398 (413)
T 3vla_A          390 TSRVGFSGT  398 (413)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 9e-54
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-38
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 1e-35
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 4e-35
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 5e-35
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 8e-35
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-33
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-33
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-33
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-33
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 2e-32
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-32
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-32
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 7e-32
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-31
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-31
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-30
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 4e-30
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-29
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-29
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-28
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-25
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  183 bits (464), Expect = 9e-54
 Identities = 66/371 (17%), Positives = 116/371 (31%), Gaps = 43/371 (11%)

Query: 131 EYYIVVAIGKPKQYVSLLLDTGSGITWTQCKPCIHCSQQRDPFFDPSKSKTFSKIPCNST 190
            Y I    G       L+LD    + W+ C      ++          +  +    C + 
Sbjct: 15  LYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAP 69

Query: 191 TCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNGN--GYFARYP 248
           +C            DK       Y    V G+   G  +  R      +G+         
Sbjct: 70  SCG----------SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVG 119

Query: 249 FLLGCTDNNTGD--QNGASGIMGLDRGPVSIISKTNISY-----FFYCLHSPYGSTGYIT 301
            L  C  +        G++G+ GL    +++ ++   +      F  CL +         
Sbjct: 120 VLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFG 179

Query: 302 FGKPDTVN-KKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGT 360
            G        + + YTP+VT    S  ++I+   I VG  R+P+           + +  
Sbjct: 180 GGPVPWPQFTQSMPYTPLVTKG-GSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRL 238

Query: 361 IITRFPAPVYSALRSAFRKRMKKYKMGKGIED-------LFDTCYDLSAY----KTVVVP 409
                   VY  L  AF K +                   F  CYD            VP
Sbjct: 239 PYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVP 298

Query: 410 KITIHFLGGVDLELDVRGTLVVESVRQVCLGFA------LLPSDPNSILLGNVQQRGYEV 463
            + +   GG D  +  + ++V       C+ F              +++LG  Q   + +
Sbjct: 299 NVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVL 358

Query: 464 HYDVAGRRLGF 474
            +D+  +RLGF
Sbjct: 359 DFDMEKKRLGF 369
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.8e-55  Score=445.24  Aligned_cols=337  Identities=22%  Similarity=0.360  Sum_probs=262.5

Q ss_pred             cHHHHHHHhHHhHhhhhhhhh---cccCCCCcccCcceeeceeecCCCCeeEEEEEEecCCCceEEEEEEcCCCceeEeC
Q 011649           84 SLEEILRRDQQRLHLKNSRRL---QKAIPDNFKKTKAFTFPAKTGIVAADEYYIVVAIGKPKQYVSLLLDTGSGITWTQC  160 (480)
Q Consensus        84 ~~~~~l~~d~~R~~~l~~~r~---~~~~~~~~~~~~~~~~p~~~g~~~~~~Y~~~i~iGTP~q~~~vi~DTGS~~~Wv~c  160 (480)
                      ++++.++++..+.++++ .+.   +... ...........|+...  .+.+|+++|.||||+|++.|++||||+++||+|
T Consensus        11 ~~r~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~n~--~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~   86 (370)
T d3psga_          11 SLRQNLIKDGKLKDFLK-THKHNPASKY-FPEAAALIGDEPLENY--LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPS   86 (370)
T ss_dssp             CHHHHHHHTTCHHHHHH-HCCCCGGGGT-CTTSCCSSCCCTTGGG--TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred             cHHHHHHHcCcHHHHHH-hcccchhhhh-cccccCcccccccccc--cCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEEC
Confidence            46777777766666654 221   1110 0011122234566542  568999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCCCCcceeeecCCCcEEEEEEEEEEEEeecCC
Q 011649          161 KPCIHCSQQRDPFFDPSKSKTFSKIPCNSTTCKILLEWFPPNGQDKCSSKECPYDIAYVDGSGETGFWATDRMTIQEVNG  240 (480)
Q Consensus       161 ~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~  240 (480)
                      .+|..|..+..+.|||++|+||+..                    +     |.|.+.|++| .+.|.+++|++.+++..+
T Consensus        87 ~~C~~~~~~~~~~yd~~~Sst~~~~--------------------~-----~~~~~~Yg~G-s~~G~~~~d~~~~~~~~~  140 (370)
T d3psga_          87 VYCSSLACSDHNQFNPDDSSTFEAT--------------------S-----QELSITYGTG-SMTGILGYDTVQVGGISD  140 (370)
T ss_dssp             TTCCSGGGTTSCCBCGGGCTTCEEE--------------------E-----EEEEEESSSC-EEEEEEEEEEEEETTEEE
T ss_pred             ccCCCcccccccccCCCcccccccC--------------------C-----CcEEEEeCCc-eEEEEEEEEEEeeeceee
Confidence            9999988777899999999999887                    2     7999999999 589999999999988775


Q ss_pred             CcccccCCeEEEEEecCCCCC---CCCCceeecCCCCcc------ce----eecccce--eEEEecCCCCCceeEEeCCC
Q 011649          241 NGYFARYPFLLGCTDNNTGDQ---NGASGIMGLDRGPVS------II----SKTNISY--FFYCLHSPYGSTGYITFGKP  305 (480)
Q Consensus       241 ~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------l~----sQl~~~~--FS~cL~~~~~~~G~L~fGg~  305 (480)
                            +++.|||++...+.+   ...+||+|||+...+      +.    .|.....  ||+|+.+.....|.|+|||+
T Consensus       141 ------~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~  214 (370)
T d3psga_         141 ------TNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGI  214 (370)
T ss_dssp             ------EEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCC
T ss_pred             ------eeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCc
Confidence                  899999999887654   568999999987643      22    2322222  99999987777899999999


Q ss_pred             CC-cCCCCcEEeeceeCCCCCeeEEEEEeeEEEcceEeecCccccCCCCEEEecCCcceeccHHHHHHHHHHHHHHhhhc
Q 011649          306 DT-VNKKFVKYTPIVTTPEQSEFYHITLTGISVGGERLPLKASYFTKLSTEIDSGTIITRFPAPVYSALRSAFRKRMKKY  384 (480)
Q Consensus       306 d~-~~~~~~~~tpl~~~~~~~~~y~v~l~gIsVgg~~l~i~~~~~~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~  384 (480)
                      |+ ++.+++.|+|+..    ..+|.|.+++|.|+|+.+.....    ..+||||||++++||+++|++|++++.+..   
T Consensus       215 d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~---  283 (370)
T d3psga_         215 DSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTGPTSAIANIQSDIGASE---  283 (370)
T ss_dssp             CGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEEEHHHHHHHHHHTTCEE---
T ss_pred             CchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeCCHHHHHHHHHHhCCee---
Confidence            98 7889999999987    67899999999999988865433    469999999999999999999999887642   


Q ss_pred             cCCCCcccccccceecCCCcccccceEEEEEcCCcEEEecCCCeEEEeCCCeEEE-EEEeCC---CCCCeeeechhhhce
Q 011649          385 KMGKGIEDLFDTCYDLSAYKTVVVPKITIHFLGGVDLELDVRGTLVVESVRQVCL-GFALLP---SDPNSILLGNVQQRG  460 (480)
Q Consensus       385 ~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~f~~~  460 (480)
                       ...+  .+..+|++     ...+|+|+|+|+ |+++.|++++|+++.+  ..|+ +|....   ...+.||||++|||+
T Consensus       284 -~~~~--~~~~~C~~-----~~~~P~l~f~f~-g~~~~l~~~~yi~~~~--~~c~~~~~~~~~~~~~~~~~ILG~~flr~  352 (370)
T d3psga_         284 -NSDG--EMVISCSS-----IDSLPDIVFTID-GVQYPLSPSAYILQDD--DSCTSGFEGMDVPTSSGELWILGDVFIRQ  352 (370)
T ss_dssp             -CTTC--CEECCGGG-----GGGCCCEEEEET-TEEEEECHHHHEEECS--SCEEESEEEECCCTTSCCEEEECHHHHTT
T ss_pred             -ecCC--cEEEeccc-----cCCCceEEEEEC-CEEEEEChHHeEEEcC--CeEEEEEEEcccCCCCCCcEEECHHhhcC
Confidence             1222  23445654     457899999996 4999999999998764  3474 555432   234579999999999


Q ss_pred             eEEEEeCCCCEEEEeeCC
Q 011649          461 YEVHYDVAGRRLGFGPGN  478 (480)
Q Consensus       461 ~~vvfD~~~~riGFa~~~  478 (480)
                      +|+|||++++||||||++
T Consensus       353 ~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         353 YYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             EEEEEETTTTEEEEEEBC
T ss_pred             EEEEEECCCCEEEEEecC
Confidence            999999999999999974
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure