Citrus Sinensis ID: 011650
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 480 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LIA8 | 480 | Probable UDP-glucose 6-de | no | no | 1.0 | 1.0 | 0.872 | 0.0 | |
| Q96558 | 480 | UDP-glucose 6-dehydrogena | no | no | 1.0 | 1.0 | 0.885 | 0.0 | |
| Q9FM01 | 480 | Probable UDP-glucose 6-de | no | no | 0.995 | 0.995 | 0.868 | 0.0 | |
| O02373 | 476 | UDP-glucose 6-dehydrogena | yes | no | 0.960 | 0.968 | 0.627 | 1e-174 | |
| O70475 | 493 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.924 | 0.621 | 1e-169 | |
| Q5F3T9 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.619 | 1e-169 | |
| O60701 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.623 | 1e-168 | |
| P12378 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.619 | 1e-168 | |
| O70199 | 493 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.924 | 0.615 | 1e-168 | |
| Q5R7B3 | 494 | UDP-glucose 6-dehydrogena | yes | no | 0.95 | 0.923 | 0.621 | 1e-167 |
| >sp|Q9LIA8|UGDH1_ARATH Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/480 (87%), Positives = 456/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISVPRINAWNSD LPIYEPGL++VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA++ LK+VYAHWVPE +I+ TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVS+A+G DSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK+RFVNRVVSSMFN+VS KKIA+LGFAFKKDTGDTRETPAIDVCKGL+ DKARL
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHP+HLQP SP+T+ QV V DAYEATKD+HG+CI+T
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFKNLD+QKI++NMQKPAFVFDGRNI++++KLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480
|
Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q96558|UGDH_SOYBN UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1 | Back alignment and function description |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/480 (88%), Positives = 452/480 (94%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS RI AWNSDQLPIYEPGL+ VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHV EA+IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAI+ LKDVYA WVPE+RIL TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GA+V QVS+++G DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK+RFVNRVV+SMFNTVS KKIAILGFAFKKDTGDTRETPAIDVC+GL+GDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHPIHLQPTSP+T+ +V V DAYEATKD+HG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LDYQKI++NMQKPAFVFDGRNI+D +KLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480
|
Provides UDP-glucuronic acid for hemicellulose precursors. Glycine max (taxid: 3847) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q9FM01|UGDH2_ARATH Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/478 (86%), Positives = 451/478 (94%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISVPRINAWNSDQLPIYEPGL+++VKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT GLGAGKAADLTYWESAARMIADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILMHNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA++ LK+VYA+WVPE +I+ TNLWSAE+SKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVS+A+G DSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK RFVNR+VSSMFNTVS KK+AILGFAFKKDTGDTRETPAIDVCKGL+GDKA++
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV +E IQRDL M KFDWDHP+HLQP SP+T+ QV V DAYEATKD+H VC+LT
Sbjct: 361 SIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPA 478
EWDEFK+LDYQKI++NMQKPAF+FDGRNI++V KLR+IGFIVYSIGKPLD WLKDMPA
Sbjct: 421 EWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478
|
Provides UDP-glucuronic acid for hemicellulose precursors. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O02373|UGDH_DROME UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1 SV=1 | Back alignment and function description |
|---|
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 296/472 (62%), Positives = 371/472 (78%), Gaps = 11/472 (2%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+K+CCIGAGYVGGPT AV+ALKCP I + +VD S RI WNSD+LPIYEPGL+EVVK+C
Sbjct: 1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
R NLFFSTD+E ++EA+++F+SVNTPTKT G G G+AADL Y ESAARMIA++++S+K
Sbjct: 61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
IVVEKSTVPV+ AE+I IL N + GI++ ILSNPEFLAEGTAINDL DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG +A++ L +Y HW+P+ IL TN WS+E+SKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADVS+V+ A+G DSRIG KFL ASVGFGGSCFQKDILNL+YICE LPEVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
+N+YQK RF +++ S+FNTVS K+IAILGFAFKK+TGDTRET AI VC+ L+ + A L
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAAL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI-VASDAYEATKDSHGVCIL 419
IYDP+V E I DL HP + SP + + + + SD Y A + +H + I
Sbjct: 361 DIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVIC 411
Query: 420 TEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDK 471
TEWDEF +LD+++IY +M KPA++FDGR ILD E+L++IGF V +IGK +
Sbjct: 412 TEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGKKYQR 463
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate and heparan sulfate. Required for wingless signaling in different tissues. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70475|UGDH_MOUSE UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1530), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG KA++AL VY HWVP+++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL D + V ++ D YEA +H + I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5F3T9|UGDH_CHICK UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1529), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/468 (61%), Positives = 360/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ RINAWNSD LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
G+NLFFST ++ +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ ++ Q+LSNPEFLAEGTAI DL PDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG KA++AL VY HWVP+++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A+L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H + I TE
Sbjct: 366 IYDPKVPKEQIILDLS-------HPGVSEDNQVSRL--VTISQDPYEACDGAHALVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O60701|UGDH_HUMAN UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/468 (62%), Positives = 357/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P12378|UGDH_BOVIN UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/468 (61%), Positives = 353/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVDI+ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKL ANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL D + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|O70199|UGDH_RAT UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 590 bits (1522), Expect = e-168, Method: Compositional matrix adjust.
Identities = 288/468 (61%), Positives = 354/468 (75%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP+++IL TN WS+E+SKLAANAFLAQRISS+N++SALCE+TG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGG CFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL D + V ++ D YEA +H + I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q5R7B3|UGDH_PONAB UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1517), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/468 (62%), Positives = 356/468 (76%), Gaps = 12/468 (2%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA P I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 480 | ||||||
| 225423507 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase-l | 1.0 | 1.0 | 0.904 | 0.0 | |
| 283488487 | 480 | UDP-D-glucose dehydrogenase [Gossypium h | 1.0 | 1.0 | 0.897 | 0.0 | |
| 40317278 | 480 | UDP-glucose dehydrogenase [Cinnamomum os | 1.0 | 1.0 | 0.891 | 0.0 | |
| 297832836 | 480 | hypothetical protein ARALYDRAFT_896165 [ | 1.0 | 1.0 | 0.885 | 0.0 | |
| 225452968 | 480 | PREDICTED: UDP-glucose 6-dehydrogenase [ | 1.0 | 1.0 | 0.897 | 0.0 | |
| 283488489 | 480 | UDP-D-glucose dehydrogenase [Gossypium h | 1.0 | 1.0 | 0.891 | 0.0 | |
| 255547257 | 480 | UDP-glucose 6-dehydrogenase, putative [R | 1.0 | 1.0 | 0.893 | 0.0 | |
| 255542070 | 480 | UDP-glucose 6-dehydrogenase, putative [R | 1.0 | 1.0 | 0.885 | 0.0 | |
| 255542080 | 480 | UDP-glucose 6-dehydrogenase, putative [R | 1.0 | 1.0 | 0.891 | 0.0 | |
| 48093459 | 524 | putative UDP-glucose dehydrogenase 2 [Ni | 0.993 | 0.910 | 0.893 | 0.0 |
| >gi|225423507|ref|XP_002269692.1| PREDICTED: UDP-glucose 6-dehydrogenase-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/480 (90%), Positives = 457/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGL+EVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVGRINAWNSDQLPIYEPGLDEVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHV EA+IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GINFQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAIKAL+DVYAHWVP +RI+CTNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIKALRDVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV++VSHA+G D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI
Sbjct: 241 GADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL+GDKA L
Sbjct: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAHL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV E IQRDL M KFDWDHPIHLQP SP+++ QV V DAY ATKD+HG+CILT
Sbjct: 361 SIYDPQVSGEQIQRDLAMKKFDWDHPIHLQPLSPTSVKQVSVVWDAYTATKDAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK+LDY+KIY+NMQKPAFVFDGRN++D EKLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488487|gb|ADB24765.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/480 (89%), Positives = 458/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP I+VAVVDISVPRI+AWNSD LPIYEPGL+EVVK+
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPEIQVAVVDISVPRISAWNSDTLPIYEPGLDEVVKK 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNL FS+DVEK+V EA+IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS+
Sbjct: 61 CRGKNLLFSSDVEKYVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSN 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GINFQILSNPEFLAEGTAI DLF+PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFEPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAIKAL+DVYAHWVP DRI+CTNLWSAE+ KLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIKALRDVYAHWVPVDRIICTNLWSAELLKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADVSQVSHA+G D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI
Sbjct: 241 GADVSQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
KVNDYQKTR VNR+VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL+GDKA L
Sbjct: 301 KVNDYQKTRLVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAML 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV +E IQRDL MNKFDWDHP+HLQPTSPS++ QV V DAY ATKD+HG+CILT
Sbjct: 361 SIYDPQVSEEQIQRDLSMNKFDWDHPVHLQPTSPSSMKQVSVVWDAYAATKDAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LDYQKIY+NMQKPAFVFDGRNI+DV KLR+IGFIVYSIGKPLD+WLKDMPAVA
Sbjct: 421 EWDEFKTLDYQKIYDNMQKPAFVFDGRNIVDVAKLREIGFIVYSIGKPLDEWLKDMPAVA 480
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|40317278|gb|AAR84297.1| UDP-glucose dehydrogenase [Cinnamomum osmophloeum] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/480 (89%), Positives = 458/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEV VVDISV RI AWNS+QLPIYEPGL++VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVVVVDISVARIAAWNSEQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRG+NLFFSTD+EKH+ EA+I+FVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGRNLFFSTDIEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNSRGINFQILSNPEFLAEGTAI DLFKPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSRGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAIK LKDVYAHWVPEDRIL TNLWSAE+SKLAANA LAQRISS+NAMSALCEAT
Sbjct: 181 TPEGQKAIKTLKDVYAHWVPEDRILATNLWSAELSKLAANAVLAQRISSINAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV++V++A+G DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI
Sbjct: 241 GADVTEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK RFVNRVV+SMFNTVSGKKIA+LGFAFKKDTGDTRETPAIDVCKGL+GDKA++
Sbjct: 301 KINDYQKNRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKI 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHPIHLQP SP+T+ QV V DAYEATKD+HGVCILT
Sbjct: 361 SIYDPQVTEDQIQRDLAMNKFDWDHPIHLQPMSPTTVKQVSVTWDAYEATKDAHGVCILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LDYQKIY+NMQKPAFVFDGRNI+DVEKLRKIGFIV+SIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKALDYQKIYDNMQKPAFVFDGRNIVDVEKLRKIGFIVFSIGKPLDPWLKDMPAVA 480
|
Source: Cinnamomum osmophloeum Species: Cinnamomum osmophloeum Genus: Cinnamomum Family: Lauraceae Order: Laurales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297832836|ref|XP_002884300.1| hypothetical protein ARALYDRAFT_896165 [Arabidopsis lyrata subsp. lyrata] gi|297330140|gb|EFH60559.1| hypothetical protein ARALYDRAFT_896165 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/480 (88%), Positives = 457/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPS+EVAVVDISVPRI AWNSDQLPIYEPGL++VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRITAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILMHNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIEDLFYPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA+KALKDVYA WVPEDRIL TNLWSAE++KLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVKALKDVYAQWVPEDRILTTNLWSAELTKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GA+VS+VS+A+G DSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GANVSEVSYAVGKDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQKTRFVNR+VSSMFNTVS KKIA+LGFAFKKDTGDTRETPAIDVCKGL+GDKAR+
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARI 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV +E IQRDL MNKFDWDHPIHLQP SP+T+ QV V DAY ATKD+HG+C+LT
Sbjct: 361 SIYDPQVTEEQIQRDLTMNKFDWDHPIHLQPMSPTTVKQVSVVWDAYAATKDAHGICLLT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LDY++I+ NMQKPAFVFDGRN++D EKLRKIGFIVYSIGKPLD+WLKDMPA+A
Sbjct: 421 EWDEFKTLDYERIFENMQKPAFVFDGRNVVDAEKLRKIGFIVYSIGKPLDQWLKDMPALA 480
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452968|ref|XP_002284346.1| PREDICTED: UDP-glucose 6-dehydrogenase [Vitis vinifera] gi|147778657|emb|CAN62897.1| hypothetical protein VITISV_020300 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/480 (89%), Positives = 454/480 (94%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV RI AWNSDQLPIYEPGL+ VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRITAWNSDQLPIYEPGLDGVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHV EA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DL KPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLLKPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAI+ALKDVYAHWVPEDRIL TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVS+A+G D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
KVNDYQK RFVNRVVSSMFNTVS KKIAILGFAFKKDTGDTRETPAIDVCKGL+GDKARL
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHPIHLQP SP+T+ QV + DAY ATKD+HG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPIHLQPMSPTTVKQVSMVWDAYSATKDAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LDY+KIY+NMQKPAFVFDGRNI++ EKLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKTLDYKKIYDNMQKPAFVFDGRNIVNAEKLREIGFIVYSIGKPLDPWLKDMPAVA 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488489|gb|ADB24766.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/480 (89%), Positives = 457/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGL+ VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLDAVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GINFQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA++ALKDVYAHWVPEDRIL TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGNKAVQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVS+A+G D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GADVTQVSYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK RFVNRVVSSMFNTVS KKIAILGFAFKKDTGDTRETPAIDVCKGL+GDKARL
Sbjct: 301 KINDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SI+DPQV + IQRDL M KFDWDHP+HLQP SP+T+ QV DAYEAT D+HG+CILT
Sbjct: 361 SIFDPQVTVDQIQRDLTMKKFDWDHPLHLQPMSPTTVKQVTSVWDAYEATNDAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFKNLD+++IY+NMQKPAFVFDGRNI++V++LR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDFKRIYDNMQKPAFVFDGRNIVNVDQLREIGFIVYSIGKPLDAWLKDMPAVA 480
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547257|ref|XP_002514686.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] gi|223546290|gb|EEF47792.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/480 (89%), Positives = 455/480 (94%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMA+IALKCPSIEVAVVDISV RI AWNSD LPIYEPGL+EVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAIIALKCPSIEVAVVDISVSRIAAWNSDHLPIYEPGLDEVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRG+NLFFSTDVEKHV EANI+FVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGENLFFSTDVEKHVSEANIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL+HNSRGI +QILSNPEFLAEGTAI DL PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILLHNSRGIKYQILSNPEFLAEGTAIQDLLNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TP+G KAI+ALKDVYAHWVPEDRIL TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPDGQKAIQALKDVYAHWVPEDRILATNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADVSQVSHA+G D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVSQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLAEVANYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQKTRFVNR+VSSMFNTVSGKKI ILGFAFKKDTGDTRETPAIDVCKGL+GDKA L
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSGKKIGILGFAFKKDTGDTRETPAIDVCKGLLGDKACL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHP+HLQP SPS + QV V DAYEATK +HG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPVHLQPLSPSGVKQVSVVWDAYEATKGAHGLCILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFKNLDYQKI++NMQKPAFVFDGRNILDV+KLR IGFIVYSIGKPLD+WL+DMPAVA
Sbjct: 421 EWDEFKNLDYQKIFDNMQKPAFVFDGRNILDVDKLRNIGFIVYSIGKPLDQWLRDMPAVA 480
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542070|ref|XP_002512099.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] gi|223549279|gb|EEF50768.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/480 (88%), Positives = 457/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGL++VVK+
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVARINAWNSDQLPIYEPGLDDVVKE 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRG+NLFFSTDVEKHV EA+IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGRNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GINFQILSNPEFLAEGTAI+DLFKPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAISDLFKPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAI+AL+DVYAHWVP ++I+CTNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVSHA+G D+RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI
Sbjct: 241 GADVTQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
KVNDYQK RFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL+GDKA+L
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL M KFDWDHPIHLQP SP+++ QV DAYEATK +HG+CILT
Sbjct: 361 SIYDPQVSEDQIQRDLSMKKFDWDHPIHLQPVSPTSVKQVSCVWDAYEATKGAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LDY++IY NMQKPAFVFDGRNI+D +KLR+IGFIVY+IGKPLD WLKDMPA+A
Sbjct: 421 EWDEFKTLDYERIYENMQKPAFVFDGRNIVDADKLRQIGFIVYAIGKPLDPWLKDMPAIA 480
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542080|ref|XP_002512104.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] gi|223549284|gb|EEF50773.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/480 (89%), Positives = 456/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RINAWNSDQLPIYEPGL++VVK+
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVARINAWNSDQLPIYEPGLDDVVKE 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
RGKNLFFSTDVEKHV EA+IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 RRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILMHNS+GINFQILSNPEFLAEGTAI DLFKPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KAI+ALKDVYAHWVP ++I+CTNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVSHA+G D+RIGPKFLNAS+GFGGSCFQKDILNLVYICECNGLPEVANYWKQVI
Sbjct: 241 GADVTQVSHAVGKDTRIGPKFLNASIGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
KVNDYQK RFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVC GL+GDKA+L
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCNGLLGDKAQL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV + IQRDL M KFDWDHPIHLQP SPST+ QV A D YEATK +HG+CILT
Sbjct: 361 SIYDPQVSHDQIQRDLSMKKFDWDHPIHLQPMSPSTVKQVSHAWDPYEATKGAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK+LDYQKIY+NMQKPAFVFDGRN++D +KLR+IGFIVY+IGKPLD WLKDMPA+A
Sbjct: 421 EWDEFKSLDYQKIYDNMQKPAFVFDGRNVVDADKLRRIGFIVYAIGKPLDPWLKDMPAIA 480
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|48093459|gb|AAT40106.1| putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/477 (89%), Positives = 456/477 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRI AWNSDQLPIYEPGLE+VVK+
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRITAWNSDQLPIYEPGLEDVVKE 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRG+NLFFSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGRNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GINFQILSNPEFLAEGTAI DLFKPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TP G KAI+ALKDVYA WVPEDRIL TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPGGQKAIQALKDVYAQWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GA+VSQV++A+G DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GANVSQVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQKTRFVNRVV+SMFNTVSGKK+A+LGFAFKKDTGDTRETPAIDVCKGL+GDKA+L
Sbjct: 301 KINDYQKTRFVNRVVASMFNTVSGKKVAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHP+HLQP SP+T+ QV V DAY ATKD+H VCILT
Sbjct: 361 SIYDPQVNEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYTATKDAHAVCILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMP 477
EWDEFK LDYQKIY+NMQKPAF+FDGRN++D+EKLR+IGFIVYSIGKPLD WLKDMP
Sbjct: 421 EWDEFKTLDYQKIYDNMQKPAFIFDGRNVVDMEKLREIGFIVYSIGKPLDAWLKDMP 477
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 480 | ||||||
| TAIR|locus:2180872 | 480 | UGD3 "UDP-glucose dehydrogenas | 1.0 | 1.0 | 0.879 | 1.7e-233 | |
| TAIR|locus:2093827 | 480 | UGD2 "UDP-glucose dehydrogenas | 1.0 | 1.0 | 0.872 | 1.5e-232 | |
| TAIR|locus:2157275 | 480 | UDG4 "UDP-glucose dehydrogenas | 0.995 | 0.995 | 0.868 | 3.3e-230 | |
| TAIR|locus:2197945 | 481 | UGD1 "UDP-glucose dehydrogenas | 1.0 | 0.997 | 0.844 | 4.1e-223 | |
| FB|FBgn0261445 | 476 | sgl "sugarless" [Drosophila me | 0.952 | 0.960 | 0.632 | 3.3e-157 | |
| UNIPROTKB|I3LIM2 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.626 | 1.3e-153 | |
| UNIPROTKB|E2R311 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.626 | 5.8e-153 | |
| MGI|MGI:1306785 | 493 | Ugdh "UDP-glucose dehydrogenas | 0.95 | 0.924 | 0.626 | 5.8e-153 | |
| UNIPROTKB|Q5F3T9 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.619 | 7.4e-153 | |
| UNIPROTKB|O60701 | 494 | UGDH "UDP-glucose 6-dehydrogen | 0.95 | 0.923 | 0.623 | 9.5e-153 |
| TAIR|locus:2180872 UGD3 "UDP-glucose dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2252 (797.8 bits), Expect = 1.7e-233, P = 1.7e-233
Identities = 422/480 (87%), Positives = 456/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCPS+EVAVVDISVPRINAWNSDQLPIYEPGL++VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRINAWNSDQLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIEDLFMPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
T EG A+KALKD+YA WVPE+RIL TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TTEGFAAVKALKDIYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GA+VS+VS+A+G DSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GANVSEVSYAVGKDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQKTRFVNR+VSSMFNTVS KKIA+LGFAFKKDTGDTRETPAIDVCKGL+GDKARL
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV +E IQRDL MNKFDWDHP+HLQP SP+T+ QV VA DAY ATKD+HG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVAWDAYTATKDAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFK LD+Q+I+ NMQKPAFVFDGRN++D +KLR+IGFIVYSIGKPLD+WLKDMPA+A
Sbjct: 421 EWDEFKKLDFQRIFENMQKPAFVFDGRNVVDADKLREIGFIVYSIGKPLDQWLKDMPALA 480
|
|
| TAIR|locus:2093827 UGD2 "UDP-glucose dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2243 (794.6 bits), Expect = 1.5e-232, P = 1.5e-232
Identities = 419/480 (87%), Positives = 456/480 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISVPRINAWNSD LPIYEPGL++VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA++ LK+VYAHWVPE +I+ TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVS+A+G DSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK+RFVNRVVSSMFN+VS KKIA+LGFAFKKDTGDTRETPAIDVCKGL+ DKARL
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV ++ IQRDL MNKFDWDHP+HLQP SP+T+ QV V DAYEATKD+HG+CI+T
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 480
EWDEFKNLD+QKI++NMQKPAFVFDGRNI++++KLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 421 EWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480
|
|
| TAIR|locus:2157275 UDG4 "UDP-glucose dehydrogenase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 415/478 (86%), Positives = 451/478 (94%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISVPRINAWNSDQLPIYEPGL+++VKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVREA+IVFVSVNTPTKT GLGAGKAADLTYWESAARMIADVS SD
Sbjct: 61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILMHNS+GI FQILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA++ LK+VYA+WVPE +I+ TNLWSAE+SKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QVS+A+G DSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK RFVNR+VSSMFNTVS KK+AILGFAFKKDTGDTRETPAIDVCKGL+GDKA++
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV +E IQRDL M KFDWDHP+HLQP SP+T+ QV V DAYEATKD+H VC+LT
Sbjct: 361 SIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPA 478
EWDEFK+LDYQKI++NMQKPAF+FDGRNI++V KLR+IGFIVYSIGKPLD WLKDMPA
Sbjct: 421 EWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478
|
|
| TAIR|locus:2197945 UGD1 "UDP-glucose dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2154 (763.3 bits), Expect = 4.1e-223, P = 4.1e-223
Identities = 406/481 (84%), Positives = 444/481 (92%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAV+ALKCP IEV VVDIS PRINAWNSD+LPIYEPGLE+VVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHV E++IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS
Sbjct: 61 CRGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSS 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPV+TAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DL+ PDRVLIGGR+
Sbjct: 121 KIVVEKSTVPVRTAEAIEKILTHNSKGIEFQILSNPEFLAEGTAIKDLYNPDRVLIGGRD 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
T G KAIKAL+DVYAHWVP ++I+CTNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TAAGQKAIKALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+QV+HA+G D+RIGPKFLNASVGFGGSCFQKDILNL+YICECNGLPE ANYWKQV+
Sbjct: 241 GADVTQVAHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEAANYWKQVV 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
KVNDYQK RF NRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVC L+ DKA+L
Sbjct: 301 KVNDYQKIRFANRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCNRLVADKAKL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN-QVIVASDAYEATKDSHGVCIL 419
SIYDPQV +E I+RDL M +FDWDHP+ LQ I+ QV V SDAYEATKD+HG+C+L
Sbjct: 361 SIYDPQVLEEQIRRDLSMARFDWDHPVPLQQIKAEGISEQVNVVSDAYEATKDAHGLCVL 420
Query: 420 TEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAV 479
TEWDEFK+LD++KI++NMQKPAFVFDGRN++D KLR+IGFIVYSIGKPLD WLKDMPAV
Sbjct: 421 TEWDEFKSLDFKKIFDNMQKPAFVFDGRNVVDAVKLREIGFIVYSIGKPLDSWLKDMPAV 480
Query: 480 A 480
A
Sbjct: 481 A 481
|
|
| FB|FBgn0261445 sgl "sugarless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
Identities = 296/468 (63%), Positives = 370/468 (79%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+K+CCIGAGYVGGPT AV+ALKCP I + +VD S RI WNSD+LPIYEPGL+EVVK+C
Sbjct: 1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
R NLFFSTD+E ++EA+++F+SVNTPTKT G G G+AADL Y ESAARMIA++++S+K
Sbjct: 61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
IVVEKSTVPV+ AE+I IL N + GI++ ILSNPEFLAEGTAINDL DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG +A++ L +Y HW+P+ IL TN WS+E+SKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADVS+V+ A+G DSRIG KFL ASVGFGGSCFQKDILNL+YICE LPEVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
+N+YQK RF +++ S+FNTVS K+IAILGFAFKK+TGDTRET AI VC+ L+ + A L
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAAL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI-VASDAYEATKDSHGVCIL 419
IYDP+V E I DL HP + SP + + + + SD Y A + +H + I
Sbjct: 361 DIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVIC 411
Query: 420 TEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGK 467
TEWDEF +LD+++IY +M KPA++FDGR ILD E+L++IGF V +IGK
Sbjct: 412 TEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459
|
|
| UNIPROTKB|I3LIM2 UGDH "UDP-glucose 6-dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 293/468 (62%), Positives = 360/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIALKCP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIALKCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIQDLKYPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP+++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + + + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVARL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILDV--EKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
| UNIPROTKB|E2R311 UGDH "UDP-glucose 6-dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 293/468 (62%), Positives = 357/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP Q S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSQDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILDV--EKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
| MGI|MGI:1306785 Ugdh "UDP-glucose dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 293/468 (62%), Positives = 357/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG KA++AL VY HWVP+++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP S + V ++ D YEA +H + I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSADDQVSRL--VTISKDPYEACDGAHALVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILDV--EKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
|
|
| UNIPROTKB|Q5F3T9 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
Identities = 290/468 (61%), Positives = 360/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I+V VVD++ RINAWNSD LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
G+NLFFST ++ +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ ++ Q+LSNPEFLAEGTAI DL PDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG KA++AL VY HWVP+++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A+L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H + I TE
Sbjct: 366 IYDPKVPKEQIILDLS-------HPGVSEDNQVSRL--VTISQDPYEACDGAHALVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILDV--EKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464
|
|
| UNIPROTKB|O60701 UGDH "UDP-glucose 6-dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1490 (529.6 bits), Expect = 9.5e-153, P = 9.5e-153
Identities = 292/468 (62%), Positives = 357/468 (76%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
GKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241
PEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301
ADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLS 361
+NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A L
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTE 421
IYDP+VP+E I DL HP + S + V ++ D YEA +H V I TE
Sbjct: 366 IYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKNLDYQKIYNNMQKPAFVFDGRNILDV--EKLRKIGFIVYSIGK 467
WD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q96558 | UGDH_SOYBN | 1, ., 1, ., 1, ., 2, 2 | 0.8854 | 1.0 | 1.0 | no | no |
| O86422 | UDG_PSEAE | 1, ., 1, ., 1, ., 2, 2 | 0.3270 | 0.9020 | 0.9558 | yes | no |
| Q9LIA8 | UGDH1_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.8729 | 1.0 | 1.0 | no | no |
| O05973 | UDG_RICPR | 1, ., 1, ., 1, ., 2, 2 | 0.3376 | 0.8916 | 0.9861 | yes | no |
| O32271 | TUAD_BACSU | 1, ., 1, ., 1, ., 2, 2 | 0.3578 | 0.9083 | 0.9457 | yes | no |
| O60701 | UGDH_HUMAN | 1, ., 1, ., 1, ., 2, 2 | 0.6239 | 0.95 | 0.9230 | yes | no |
| Q5F3T9 | UGDH_CHICK | 1, ., 1, ., 1, ., 2, 2 | 0.6196 | 0.95 | 0.9230 | yes | no |
| Q92GB1 | UDG_RICCN | 1, ., 1, ., 1, ., 2, 2 | 0.3453 | 0.8916 | 0.9907 | yes | no |
| Q1RKF8 | UDG_RICBR | 1, ., 1, ., 1, ., 2, 2 | 0.3326 | 0.8958 | 0.9907 | yes | no |
| Q68VX0 | UDG_RICTY | 1, ., 1, ., 1, ., 2, 2 | 0.3424 | 0.8875 | 0.9815 | yes | no |
| Q4UK39 | UDG_RICFE | 1, ., 1, ., 1, ., 2, 2 | 0.3424 | 0.8979 | 0.9620 | yes | no |
| P12378 | UGDH_BOVIN | 1, ., 1, ., 1, ., 2, 2 | 0.6196 | 0.95 | 0.9230 | yes | no |
| Q5R7B3 | UGDH_PONAB | 1, ., 1, ., 1, ., 2, 2 | 0.6217 | 0.95 | 0.9230 | yes | no |
| Q19905 | UGDH_CAEEL | 1, ., 1, ., 1, ., 2, 2 | 0.5644 | 0.9520 | 0.9501 | yes | no |
| Q9FM01 | UGDH2_ARATH | 1, ., 1, ., 1, ., 2, 2 | 0.8682 | 0.9958 | 0.9958 | no | no |
| O54068 | UDG_RHIME | 1, ., 1, ., 1, ., 2, 2 | 0.3582 | 0.9041 | 0.9931 | yes | no |
| O02373 | UGDH_DROME | 1, ., 1, ., 1, ., 2, 2 | 0.6271 | 0.9604 | 0.9684 | yes | no |
| O70475 | UGDH_MOUSE | 1, ., 1, ., 1, ., 2, 2 | 0.6217 | 0.95 | 0.9249 | yes | no |
| D4GYH5 | AGLM_HALVD | 1, ., 1, ., 1, ., 2, 2 | 0.3184 | 0.8583 | 0.9581 | yes | no |
| O70199 | UGDH_RAT | 1, ., 1, ., 1, ., 2, 2 | 0.6153 | 0.95 | 0.9249 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| scaffold_300135.1 | annotation not avaliable (480 aa) | ||||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 480 | |||
| PLN02353 | 473 | PLN02353, PLN02353, probable UDP-glucose 6-dehydro | 0.0 | |
| COG1004 | 414 | COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas | 1e-128 | |
| TIGR03026 | 409 | TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog | 1e-114 | |
| pfam03721 | 188 | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose | 6e-71 | |
| COG0677 | 436 | COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de | 3e-50 | |
| pfam00984 | 96 | pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose d | 9e-41 | |
| pfam03720 | 103 | pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose | 2e-35 | |
| smart00984 | 99 | smart00984, UDPG_MGDP_dh_C, UDP binding domain | 3e-30 | |
| PRK11064 | 415 | PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydro | 6e-26 | |
| PRK15057 | 388 | PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; P | 3e-22 | |
| PRK15182 | 425 | PRK15182, PRK15182, Vi polysaccharide biosynthesis | 2e-16 |
| >gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Score = 1062 bits (2749), Expect = 0.0
Identities = 426/473 (90%), Positives = 450/473 (95%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
MVKICCIGAGYVGGPTMAVIALKCP IEV VVDISVPRI+AWNSDQLPIYEPGL+EVVKQ
Sbjct: 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ 60
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHV EA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 61 CRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKIL HNS+GINFQILSNPEFLAEGTAI DLFKPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180
Query: 181 TPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
TPEG KA++ALKDVYAHWVPE+RI+ TNLWSAE+SKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADVSQVSHA+G DSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA YWKQVI
Sbjct: 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
K+NDYQK+RFVNRVVSSMFNTVSGKKIA+LGFAFKKDTGDTRETPAIDVCKGL+GDKA+L
Sbjct: 301 KMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
SIYDPQV +E IQRDL MNKFDWDHP HLQP SP+ + QV V DAYEATK +HG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILT 420
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWL 473
EWDEFK LDYQKIY+NMQKPAFVFDGRN+LD EKLR+IGFIVYSIGKPLD WL
Sbjct: 421 EWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473
|
Length = 473 |
| >gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 378 bits (972), Expect = e-128
Identities = 181/453 (39%), Positives = 258/453 (56%), Gaps = 42/453 (9%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KI IG GYVG T A +A EV VDI ++ N PIYEPGLEE++K+
Sbjct: 2 KITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL 59
Query: 63 GKN-LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
L F+TD E+ V++A++VF++V TP G +ADL+Y E+ A+ I ++
Sbjct: 60 ASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKA 114
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRET 181
+VV KSTVPV T E + + + G +F++ SNPEFL EG+A+ D PDR++IG R
Sbjct: 115 VVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSE 174
Query: 182 PEGMKAIKALKDVYAHWVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240
+A L+++YA ++ +D IL T+L AE+ K AANAFLA +IS +N ++ +CE
Sbjct: 175 ----RAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230
Query: 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV QV+ IG D RIG FLNA G+GGSCF KD L+ E L N + V+
Sbjct: 231 GADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAE--ELGYDPNLLEAVV 288
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARL 360
+VN+ +K + ++++ + + GK IA+LG AFK +T D RE+PA+D+ K L A +
Sbjct: 289 EVNERRKDKLAEKILNHL--GLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEV 346
Query: 361 SIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILT 420
YDP + N F P + SDA EA K + + I T
Sbjct: 347 IAYDPVAME---------NAF------RNFPDVE-------LESDAEEALKGADAIVINT 384
Query: 421 EWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453
EWDEF++LD++K+ M+ P V DGRNI D +
Sbjct: 385 EWDEFRDLDFEKLL--MKTPV-VIDGRNIFDPD 414
|
Length = 414 |
| >gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-114
Identities = 158/450 (35%), Positives = 235/450 (52%), Gaps = 46/450 (10%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KI IG GYVG P A++A +V VDI +++ N + PIYEPGL+E++ +
Sbjct: 2 KIAVIGLGYVGLPLAALLADL--GHDVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKAL 59
Query: 63 GKNLF-FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
+TD E+ +R+A+++ + V TP K G + DL+Y ESAA IA +
Sbjct: 60 KAGRLRATTDYEEAIRDADVIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGA 114
Query: 122 IVVEKSTVPVKTAEAIEKILMHNS---RGINFQILSNPEFLAEGTAINDLFKPDRVLIGG 178
VV +STVP T E + K ++ S G +F + NPEFL EG A++DL PDR++ G
Sbjct: 115 TVVLESTVPPGTTEEVVKPILERSGLKLGEDFYLAYNPEFLREGNAVHDLLHPDRIVGG- 173
Query: 179 RETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238
ET E A +A+ ++Y+ + + +L T++ +AE+ KLA N F A +I+ N ++ +CE
Sbjct: 174 -ETEE---AGEAVAELYSPII-DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 228
Query: 239 ATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQ 298
A G DV +V A G D RIG FLN G GG C KD L L+ + G +
Sbjct: 229 ALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIAKAKELGYN--PELIEA 286
Query: 299 VIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA 358
++ND Q V ++ + + GK + ILG AFK +T D RE+PA+D+ + L A
Sbjct: 287 AREINDSQPDYVVEKIKDLLGA-LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGA 345
Query: 359 RLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCI 418
++ YDP VP+E ++ D EA K + + I
Sbjct: 346 KVKAYDPLVPEEEVKGL-------------------------PSIDDLEEALKGADALVI 380
Query: 419 LTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448
LT+ EFK+LD +KI + M+ V D RN
Sbjct: 381 LTDHSEFKDLDLEKIKDLMKGK-VVVDTRN 409
|
Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409 |
| >gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 6e-71
Identities = 85/193 (44%), Positives = 118/193 (61%), Gaps = 11/193 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
++I IG GYVG PT +A +V VDI+ +I+ N+ ++PIYEPGLEE++K
Sbjct: 1 MRIAVIGLGYVGLPTAVCLAEIG--HDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKAN 58
Query: 62 R-GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
L F+TDV + ++EA+++F++V TP+K G A DLTY ESAAR I V K
Sbjct: 59 VETGRLRFTTDVAEAIKEADVIFIAVPTPSKKDG----GAPDLTYVESAARTIGPVLKKG 114
Query: 121 KIVVEKSTVPVKTAEA-IEKILMHNSR---GINFQILSNPEFLAEGTAINDLFKPDRVLI 176
K+VV KSTVP T E ++ IL S G++F + SNPEFL EG A++DL PDRV+I
Sbjct: 115 KVVVVKSTVPPGTTEEVVKPILEKRSGKKFGVDFNVASNPEFLREGNALHDLLNPDRVVI 174
Query: 177 GGRETPEGMKAIK 189
G E + +
Sbjct: 175 GVTEECAEERLAE 187
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188 |
| >gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 3e-50
Identities = 138/472 (29%), Positives = 204/472 (43%), Gaps = 57/472 (12%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
I IG GYVG P A A +V VDI+ +++ N + I EP L+EVVK+
Sbjct: 9 SATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKE 66
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
+T + ++E ++ + V TP L + DL+Y ESAAR IA V K
Sbjct: 67 AVESGKLRATTDPEELKECDVFIICVPTP-----LKKYREPDLSYVESAARSIAPVLKKG 121
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGI----NFQILSNPEFLAEGTAINDLFKPDRVLI 176
+V+ +ST P T E + K L+ G+ +F + +PE + G + +L +V I
Sbjct: 122 DLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKV-I 180
Query: 177 GGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236
GG TP+ + AL Y V E I T+ +AE+ KL N F I+ N ++ +
Sbjct: 181 GG-VTPKCAELAAAL---YKTIV-EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235
Query: 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP----EV 292
C A G DV +V A R+ G GG C D L + GLP
Sbjct: 236 CNAMGIDVWEVIEAANTKPRVNI--FYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRT 293
Query: 293 ANYWKQVIKVNDYQKTRFVNRVVSSMFNT---VSGKKIAILGFAFKKDTGDTRETPAIDV 349
A ++ND V+RV ++ +SG KI +LG A+K D D RE+PA+D+
Sbjct: 294 AR------EINDSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDI 347
Query: 350 CKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEA 409
+ L + +YDP V + + T EA
Sbjct: 348 IELLEEWGGEVLVYDPYVKE--LPTRED----------GEGVTLAIL----------EEA 385
Query: 410 TKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFI 461
KD+ V I T+ EFK +DY+ I + + D RN+ E+ G
Sbjct: 386 LKDADAVVIATDHSEFKEIDYEAIGKEAK---VIVDTRNVWKREREAAKGIG 434
|
Length = 436 |
| >gnl|CDD|201536 pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose dehydrogenase family, central domain | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 9e-41
Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 209 LWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGF 268
L +AE+ K AANAFLA +IS +N ++ +CEA GADVS+V+ A G D RIG KFLN GF
Sbjct: 1 LKTAEMIKYAANAFLATKISFINELANICEAVGADVSEVARAAGLDPRIGRKFLNPGPGF 60
Query: 269 GGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQ 306
GGSCF KD L Y E GLP +V+ VN Q
Sbjct: 61 GGSCFPKDPYALTYKAEELGLPAR--LLGRVVNVNMPQ 96
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 96 |
| >gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-35
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 21/124 (16%)
Query: 328 AILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387
A+LG AFK +T D RE+PA+D+ + L+ + A + +YDP VP+E I+ +
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPEEAIEALGEDG-------- 52
Query: 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447
V + D EA K + + ILT+ DEF++LD+ KI M KP VFDGR
Sbjct: 53 ------------VTLVDDLEEALKGADAIVILTDHDEFRSLDWAKIKKLM-KPPVVFDGR 99
Query: 448 NILD 451
N+LD
Sbjct: 100 NVLD 103
|
The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 103 |
| >gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 3e-30
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 25/124 (20%)
Query: 328 AILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387
A+LG AFK +T D RE+PA+D+ + L+ A + +YDP +E + L
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAMEEAREYGLT---------- 50
Query: 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447
SD EA K + V I TE DEF++LD +++ + M+KP V DGR
Sbjct: 51 --------------YVSDLEEALKGADAVVIATEHDEFRSLDPEELKDLMKKP-VVVDGR 95
Query: 448 NILD 451
NILD
Sbjct: 96 NILD 99
|
The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99 |
| >gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 109/372 (29%), Positives = 168/372 (45%), Gaps = 46/372 (12%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC- 61
I IG GY+G PT A A + +V VDI+ ++ N ++ I EP L+ VVK
Sbjct: 5 TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAV 62
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
G L +T E A+ ++V TP K DLTY E+AA+ IA V K
Sbjct: 63 EGGYLRATTTPE----PADAFLIAVPTPFK-----GDHEPDLTYVEAAAKSIAPVLKKGD 113
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSRGINF----------QILSNPEFLAEGTAINDLFKP 171
+V+ +ST PV E + + L + F I PE + G + +L K
Sbjct: 114 LVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKN 173
Query: 172 DRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVN 231
DRV IGG TP ++Y ++ E + TN +AE+ KL N+F I+ N
Sbjct: 174 DRV-IGGM-TP---VCSARASELYKIFL-EGECVVTNSRTAEMCKLTENSFRDVNIAFAN 227
Query: 232 AMSALCEATGADVSQVSHAIGFDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGL 289
+S +C G +V ++ I +R P+ L G GG C D +V
Sbjct: 228 ELSLICADQGINVWEL---IRLANR-HPRVNILQPGPGVGGHCIAVDPWFIVAQN----- 278
Query: 290 PEVANYWKQVIKVNDYQKTRFVNRVVSSM--FNTVSGK-----KIAILGFAFKKDTGDTR 342
P+ A + +VND + +++V +++ + K KIA G AFK + D R
Sbjct: 279 PQQARLIRTAREVNDGKPHWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLR 338
Query: 343 ETPAIDVCKGLM 354
E+PA+++ + +
Sbjct: 339 ESPAMEIAELIA 350
|
Length = 415 |
| >gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 3e-22
Identities = 99/390 (25%), Positives = 165/390 (42%), Gaps = 44/390 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
+KI G GYVG +IA + EV +DI R+ N PI + +++ ++
Sbjct: 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS- 56
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPT----KTQGLGAGKAADLTYWESAARMIADVS 117
+ F+ ++K+ + +V + TPT KT S +I DV
Sbjct: 57 --DKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNT---------SSVESVIKDVV 105
Query: 118 K--SDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVL 175
+ ++V KSTVPV A+ K + + I F +PEFL EG A+ D P R++
Sbjct: 106 EINPYAVMVIKSTVPVGFTAAMHK--KYRTENIIF----SPEFLREGKALYDNLHPSRIV 159
Query: 176 IGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235
IG R A + +P L T+ AE KL AN +LA R++ N + +
Sbjct: 160 IGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDS 216
Query: 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANY 295
E+ G + Q+ + D RIG + N S G+GG C KD L + +P N
Sbjct: 217 YAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQL--LANYQSVPN--NL 272
Query: 296 WKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355
++ N +K + ++S + + I K + + R + + K +
Sbjct: 273 ISAIVDANRTRKDFIADAILSR-----KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKA 327
Query: 356 DKARLSIYDPQVPQE-----HIQRDLQMNK 380
+ IY+P + ++ ++RDL K
Sbjct: 328 KGVEVIIYEPVMKEDSFFNSRLERDLATFK 357
|
Length = 388 |
| >gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 105/387 (27%), Positives = 166/387 (42%), Gaps = 41/387 (10%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61
VKI IG GYVG P +AV K S +V D++ RI + + + EE +++
Sbjct: 7 VKIAIIGLGYVGLP-LAVEFGK--SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREA 62
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
R L F++++EK ++E N ++V TP T K DLT A+ + V
Sbjct: 63 R--YLKFTSEIEK-IKECNFYIITVPTPINTY-----KQPDLTPLIKASETVGTVLNRGD 114
Query: 122 IVVEKSTV-PVKTAEAIEKILMHNSRGINFQ----ILSNPEFLAEGTAINDLFKPDRVLI 176
IVV +STV P T E IL S G+ F + +PE + G + L ++
Sbjct: 115 IVVYESTVYPGCTEEECVPILARMS-GMTFNQDFYVGYSPERINPGDKKHRLTNIKKITS 173
Query: 177 GGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236
G + + + +VY + ++ AE +K+ N I+ VN ++ +
Sbjct: 174 GSTA-----QIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228
Query: 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGF-GGSCFQKDILNLVYICECNGLPEVANY 295
D V A G FL G GG C D L + + G Y
Sbjct: 229 FNRLNIDTEAVLRAAGSKW----NFLPFRPGLVGGHCIGVDPYYLTHKSQGIG------Y 278
Query: 296 WKQVI----KVNDYQKTRFVNRVVSSMFN---TVSGKKIAILGFAFKKDTGDTRETPAID 348
+ ++I ++ND +++ +M V G + ILGF FK++ D R T ID
Sbjct: 279 YPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRIID 338
Query: 349 VCKGLMGDKARLSIYDPQVPQEHIQRD 375
V K L ++ I+DP V E ++R+
Sbjct: 339 VVKELGKYSCKVDIFDPWVDAEEVRRE 365
|
Length = 425 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 480 | |||
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 100.0 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 100.0 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 100.0 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 100.0 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 100.0 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 100.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.98 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.97 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.96 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.96 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.96 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.96 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.96 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.95 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 99.94 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 99.93 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.93 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.93 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.93 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.91 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.91 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.89 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.88 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.85 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.84 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.83 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.83 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.8 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.78 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.77 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.77 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.76 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.75 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.74 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.73 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.73 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.73 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.72 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.72 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.71 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.69 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.67 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.67 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.66 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.66 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.65 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.64 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.62 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.62 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.61 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.6 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.59 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.59 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.52 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.51 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.51 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.5 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.5 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.48 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.48 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.47 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.47 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.47 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.45 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.44 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.43 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.4 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.38 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.37 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.37 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.37 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.36 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.32 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.28 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.28 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.28 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.27 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.24 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.2 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.2 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.19 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.17 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.15 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.14 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.13 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.13 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.09 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.05 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.02 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.01 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.98 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.97 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.96 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.93 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.92 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.83 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.79 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.76 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.75 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.71 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.7 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.67 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.67 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.64 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.59 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.59 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.57 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.57 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.57 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.55 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.53 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.53 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.49 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.45 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.44 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.44 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.43 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.42 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.41 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.38 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.38 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.35 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.34 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.33 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.32 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 98.32 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.27 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.23 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.22 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.21 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.19 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.19 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.19 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.17 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.15 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.15 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.14 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.14 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.13 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.12 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.12 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.08 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 98.07 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.07 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.06 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.98 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.97 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.96 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.96 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.95 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.93 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.92 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.91 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.88 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.87 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.86 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.82 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.82 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.8 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.79 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.77 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.77 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.75 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.75 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.74 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.74 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.73 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.7 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.69 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.68 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.65 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.65 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.64 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.64 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.63 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.62 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.61 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.61 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.58 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.58 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.57 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.56 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.55 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.53 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.52 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.52 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.52 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.51 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.5 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.5 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.49 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.49 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.48 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.48 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.48 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.46 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.46 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 97.46 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.45 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.42 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.41 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.4 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.4 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.39 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.38 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.37 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.36 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.35 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.34 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.33 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.3 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.3 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.29 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.28 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.27 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.27 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.22 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.22 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.22 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.21 | |
| PLN00106 | 323 | malate dehydrogenase | 97.2 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.18 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.16 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.15 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.15 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.14 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.13 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.1 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.08 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.08 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.07 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.06 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.06 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.06 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.06 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.05 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.99 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.99 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.95 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.93 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.92 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.89 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.89 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.84 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.84 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.82 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.82 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.81 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.81 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.81 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.78 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.77 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.75 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.74 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.72 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.72 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.71 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.71 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.7 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.7 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.69 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.69 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 96.69 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.69 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.68 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.67 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.66 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.66 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.65 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.64 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.64 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.63 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.62 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.6 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.59 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.58 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.56 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.52 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.51 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.49 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.49 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.49 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.46 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.45 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.42 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.42 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 96.41 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.4 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.39 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 96.35 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 96.35 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.35 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.34 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.31 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.29 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.29 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.27 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.25 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 96.24 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.22 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.22 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 96.21 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.2 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.18 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.17 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.17 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.17 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.15 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.11 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 96.02 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.96 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.93 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.93 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.92 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 95.89 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.89 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.88 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.86 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.85 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.85 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.8 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.8 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.8 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.78 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.77 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.77 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.75 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.73 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.68 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.68 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.63 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.63 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.63 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.63 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.63 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.62 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.57 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.56 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.54 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 95.52 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.51 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.5 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.5 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.47 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.46 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.45 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.43 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.4 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.37 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.37 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 95.37 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.34 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 95.34 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.33 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.32 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.3 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.28 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.25 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.23 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.22 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.21 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.19 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.19 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.19 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.17 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.16 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.16 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.15 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 95.15 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.13 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.11 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.11 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.11 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.09 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.08 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.07 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 95.05 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.01 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.01 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.99 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.99 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.97 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.94 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.94 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.93 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.92 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.92 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 94.92 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.89 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.88 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.88 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.88 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 94.87 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 94.87 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.84 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.84 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.83 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.79 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 94.79 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.75 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 94.75 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.75 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.72 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.7 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.7 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.69 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 94.65 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 94.64 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 94.63 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.62 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.59 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.57 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 94.57 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 94.57 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.56 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.55 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.55 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.54 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.45 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 94.44 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 94.44 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.42 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 94.42 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 94.42 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 94.38 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.36 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.34 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.32 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 94.31 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.3 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 94.27 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.27 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.22 | |
| PTZ00245 | 287 | ubiquitin activating enzyme; Provisional | 94.21 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 94.2 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.2 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.19 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.17 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.17 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 94.11 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.1 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 94.07 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.06 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 94.06 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.06 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.04 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.01 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.01 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 93.97 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.96 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 93.95 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.94 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 93.93 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.9 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.9 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 93.9 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 93.9 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.89 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 93.89 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.84 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 93.84 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 93.83 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.81 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.79 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 93.75 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.75 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 93.73 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 93.71 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.64 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.62 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 93.62 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.59 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.59 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.59 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 93.59 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.58 | |
| PLN02477 | 410 | glutamate dehydrogenase | 93.56 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.53 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.53 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 93.52 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 93.48 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.48 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 93.46 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 93.45 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 93.41 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.38 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.37 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 93.36 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.36 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 93.35 |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-100 Score=797.40 Aligned_cols=473 Identities=90% Similarity=1.398 Sum_probs=434.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+||||+++|..|++++.|++|+++|+++++++++++|..+++|+++++++.+...+++++|+++++++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999987446889999999999999999999999999999987644456999999988899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||.+.++.+++..+|++++++++++|+++++++++||.+||+||||++++.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999987644333458999999999999999999999999999999999999988877654467899999999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
||++++++.+|++||+|+.++.+.+++.++++++|+.+.+..++..+++++||++|+++|+|++++|+|+||++++|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999874433366889999999998744578889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhcC
Q 011650 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFN 320 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (480)
|+|+++|+++++++||+|++|++||+||||||||||+++|++.+++.|+++.++++++++++|++||+++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999988667899999999999999999999998877
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|||+|||+||+|+|+||+++|++.|+++|++|.+|||++..++..+.++...++|++|.++++-++.....+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 78999999999999999999999999999999999999999999999887665567667899999988787777766678
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCcccc
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWL 473 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
++++++++++++||+||++|+|++|++++|+.+.+.|++|++|||+||+++++.+++.||+|+|+|++.++||
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~~~~~~~ 473 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL 473 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCCCCCCCC
Confidence 9999999999999999999999999999999999999888789999999999999999999999999999997
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-95 Score=685.44 Aligned_cols=480 Identities=83% Similarity=1.335 Sum_probs=463.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+-||+||+|.|..+.++.++|..+|+++|++..++++||+..+|+||||+++.++++...++.|++|++.++.++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+.|.||....|.|.++.+|++|++++.+.|++.....++|+..||+|+.+.+.+..+|...+.|..|.+.++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999998888888899999999999999999999999999999999999999999997666688999999999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+|.++.++++|+|++|||.++...-++.+.+..+|++..+...+.+++.+++|+.||+.|+|++..|+.+|.+..+||..
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999987766677888899999999987789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhcC
Q 011650 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFN 320 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (480)
|+|+.+|..+++++.|||++|++.+.||||+||.||+..|+++++.+|+|+++.+|++++.+|+||+.++++++...|+.
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc-Cc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI-NQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 399 (480)
.+.++||+|||+|||.||.|+||||++.+.+.|++.++...+|||.+..+.+.++|....++||+|.|+++.++... ..
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~k~ 400 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVSKQ 400 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999855 78
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCccccccCCCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+++..++|+|.++|++++|+|.|+||+++|+++|.+.|.+|++||||||++|.+++++.||+.+.||.+.++|+++||++
T Consensus 401 VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~~dq~~~~~~a~ 480 (481)
T KOG2666|consen 401 VTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKPLDQWLKDMPAV 480 (481)
T ss_pred eeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCChHHhhcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011650 480 A 480 (480)
Q Consensus 480 ~ 480 (480)
+
T Consensus 481 g 481 (481)
T KOG2666|consen 481 G 481 (481)
T ss_pred C
Confidence 5
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-95 Score=711.71 Aligned_cols=412 Identities=43% Similarity=0.715 Sum_probs=385.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+..|.+|++. ||+|+++|+++++++.|++|..|++|||+++++++ ...+++++|+|++++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999998 99999999999999999999999999999999986 55678999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
++|||||||..++| +.|+++++++++.|.++++..++||++|||||||++.+.+.+.+...+.+|.++++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999998855 8999999999999999999889999999999999999988776655445899999999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC-CCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV-PEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
+|+|++++++|+|||+|.. ++++.+.++++|..+. ...++..++..+||++||+.|+|++++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~----~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVR----SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccC----ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 4567888999998753 2357888999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
.|+|.++|+++++.|+|||.+|++||+||||+|||||+.+|+..|++.|++ ..+++++.++|+.|+.++++++.+.++
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 789999999999999999999999875
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+++++|+||||+|||||||+|+||++.|++.|++.|++|++|||.+.++.... +++
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~----------------------~~~ 363 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN----------------------FPD 363 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc----------------------CCC
Confidence 89999999999999999999999999999999999999999999998765321 236
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
+.+++++++++++||++|+.|.|++|+++||+.+ +|+.| +|||+||+|+++
T Consensus 364 ~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~~ 414 (414)
T COG1004 364 VELESDAEEALKGADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDPD 414 (414)
T ss_pred ceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCCC
Confidence 7899999999999999999999999999999998 89988 899999999863
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-94 Score=706.91 Aligned_cols=418 Identities=33% Similarity=0.475 Sum_probs=378.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||||||||+|+|..|+++ |++|+|+|+|+.+++.+|+|.+++.|+++++++++ +..|++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999997765 56789999999988 78999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHH-HhhcC---CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIL-MHNSR---GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l-~~~~~---g~~~~v~~~P 156 (480)
++|||||||.+. .+.||+++++++.+.|+++|++|++||.+||++||||+++...+ ++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~-----~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKK-----YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCC-----CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 999999999876 45999999999999999999999999999999999999976554 54343 6899999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||..||+..+++.+.++| +||. ++++.+.+..+|+.+.. ..+.++++.+|||+|+.+|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kV-IgG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-IGGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCce-eecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999997 5776 58999999999999986 47788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++|| .+.++||||+||||+|.||+||++.|+++|.+ +++++.++++|+.||.|++.++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 58899999999999999999999999999988 899999999999999999999988
Q ss_pred Hh---cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC
Q 011650 317 SM---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS 393 (480)
Q Consensus 317 ~~---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.| ++.+++++|+|+|||||+|++|+||||+++|++.|.+.|++|.+|||+++.-. .+..+
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~-~~~~~---------------- 374 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELP-TREDG---------------- 374 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcch-hhhhc----------------
Confidence 55 67889999999999999999999999999999999999999999999998633 11100
Q ss_pred CCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011650 394 PSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGK 467 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
..++ ..+++++++++|+|||+|+|++|+.+|++.+.+. .+ +|||+||++++.... +.++|+
T Consensus 375 ----~~~~-~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~--~~-vivDtrnV~~~~~~~-----~~~i~~ 435 (436)
T COG0677 375 ----EGVT-LAILEEALKDADAVVIATDHSEFKEIDYEAIGKE--AK-VIVDTRNVWKREREA-----AKGIGR 435 (436)
T ss_pred ----cccc-hhhHHHHhccCCEEEEEeccHHhhcCCHHHhccC--Cc-EEEECccccchhhhh-----hhcccC
Confidence 1112 3678999999999999999999999999998765 34 999999999987654 556664
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-82 Score=655.58 Aligned_cols=407 Identities=24% Similarity=0.321 Sum_probs=359.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+||||++||.+|++ ||+|++||+++++++.+++|..|+.|++++++... +++.++++.+ ++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCC
Confidence 3899999999999999999886 69999999999999999999999999999998653 6788998876 589999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhcC---CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNSR---GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~---g~~~~v~~~P 156 (480)
++|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++..+ +.+|.++|+|
T Consensus 79 vvii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~P 153 (425)
T PRK15182 79 FYIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSP 153 (425)
T ss_pred EEEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCC
Confidence 99999999986643 7999999999999999999999999999999999997 4566665332 4679999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
||+.+|.+..++.+++++|+|+. +++.+.++++|+.+.....++.+++++||++|+++|+|++++|+|+||++.+
T Consensus 154 E~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 154 ERINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred CcCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876653 6788899999999863346788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++|++++++++++ ..+.||+ |||||||||+++|++.+++.|+. ++++++++++|+.||+++++++++
T Consensus 229 ae~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~ 303 (425)
T PRK15182 229 FNRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIK 303 (425)
T ss_pred HHHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999753 2345666 99999999999999999999987 789999999999999999999999
Q ss_pred Hh---cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC
Q 011650 317 SM---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS 393 (480)
Q Consensus 317 ~~---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
.+ ++++++++|+|||+|||+||+|+||||+++|++.|.++|++|.+|||++..+...+.++
T Consensus 304 ~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~---------------- 367 (425)
T PRK15182 304 AMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG---------------- 367 (425)
T ss_pred HHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC----------------
Confidence 87 45688999999999999999999999999999999999999999999987655433221
Q ss_pred CCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH
Q 011650 394 PSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
.... .+.++++||+|||+|+|++|+++||+.+.+.|+.|.+|||+||+++.+
T Consensus 368 ------~~~~--~~~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 368 ------IIPV--SEVKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred ------cccc--hhhhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 1001 123578999999999999999999999999887655999999999854
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=636.76 Aligned_cols=406 Identities=40% Similarity=0.625 Sum_probs=371.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++|..+++|+++++++.+. ..+++++++++++++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999998 999999999999999999999999999999987652 3466899999998899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHH-HHHHhhc--C-CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE-KILMHNS--R-GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (480)
+||+|||||...++ .+|++++.++.+++.++++++++|+++||++|||++++. +.+++.. . +.+|.++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999986643 899999999999999999999999999999999999885 5555522 1 5678999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
|++.+|.+..++.+|+++++|++ +++.++++++|+.++...+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998853 8899999999999862246788999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
|+++|+|+++++++++++++++.+++.||+||||+|++||++++.+.|++.|++ .+++++++++|+.||+++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.| +++++++|+|||+||||||+|+||||++.|++.|+++|++|.+|||++..+.... +
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~-~-------------------- 364 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG-L-------------------- 364 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh-c--------------------
Confidence 88 5789999999999999999999999999999999999999999999998765321 1
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
..+.+++++++++|+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 365 ----~~~~~~~~~~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 365 ----PLIDDLEEALKGADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred ----ccCCCHHHHHhCCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 1246889999999999999999999999999999999888 9999997
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-78 Score=624.30 Aligned_cols=394 Identities=28% Similarity=0.410 Sum_probs=348.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|+||+++|.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...++++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 58999999999999999999998 99999999999999999999999999999998764 345778887753 479
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC----------CCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR----------GIN 149 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----------g~~ 149 (480)
|+||+|||||.+.++ .+|++++.+++++|.++++++++||++||++||+++++...+.+.+. +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999986643 89999999999999999999999999999999999999877665321 357
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011650 150 FQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
|.++|+|||+.+|.+..++.++++++ ||. ++++.++++++|+.+++ ..++.+++++||++|+++|+|++++|++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~----~~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGM----TPVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeC----CHHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999875 775 37899999999999875 4667889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHH
Q 011650 230 VNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTR 309 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (480)
+||++.+|+++|+|+++|+++++++||+ .+++||+||||||||||+++|.+. .+.. ++++++++++|+.||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~~---~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQ---NPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHHh---cCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 578999999999999999999763 4443 68999999999999999
Q ss_pred HHHHHHHHh-------cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChhHHHhhhhcccC
Q 011650 310 FVNRVVSSM-------FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQEHIQRDLQMNKF 381 (480)
Q Consensus 310 ~~~~~~~~~-------~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~ 381 (480)
+++++.+.+ ++++++++|+|||+|||+||+|+||||+++|++.|+++| ++|.+|||++...... +
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~--~----- 371 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK--L----- 371 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh--c-----
Confidence 999999876 456889999999999999999999999999999999996 9999999998653211 1
Q ss_pred CCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 382 DWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
...+. ..++++++++||+|||+|+|++|+++||+++ ..| +|||+
T Consensus 372 ---------------~~~~~-~~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~----~~~-~v~D~ 415 (415)
T PRK11064 372 ---------------DGLVT-LVSLDEALATADVLVMLVDHSQFKAINGDNV----HQQ-WVVDT 415 (415)
T ss_pred ---------------cCcee-eCCHHHHHhCCCEEEECCCCHHhccCCHHHh----CCC-EEEeC
Confidence 01122 3789999999999999999999999999875 346 89995
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-78 Score=618.15 Aligned_cols=374 Identities=24% Similarity=0.370 Sum_probs=331.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||||+++|..|+ . ||+|++||+++++++++++|..+++|+++++++.+. .+++++++++.+++.+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998887 4 899999999999999999999999999999987642 4567778888887899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||||.+.. ...+|++++++++++|.+ ++++++||++||+||||++++.+.+.+ +.++|+|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999996542 237899999999999988 689999999999999999999877653 357899999999
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHH-hccCCCC-eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVY-AHWVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~-~~~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
|++++++++|++||+|+. ++..+++.++| ..+.... +++++++++||++|+++|+|++++|+|+||++++|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 34556666666 4433222 3357999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.++ +++ ++++++++++|+.||+++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~~--~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQ--SVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhcc--CCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 9999999999999999999999999999999999999999987764 445 6799999999999999999999874
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
++++|+|||+||||||+|+||||+++|++.|.++|++|.+|||+++... . .+
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~----------------------~~ 346 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---F----------------------FN 346 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---h----------------------cC
Confidence 6789999999999999999999999999999999999999999986543 1 14
Q ss_pred eEEecChhhhcccCcEEEEeecCccccccc
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLD 429 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~ 429 (480)
+.+++++++++++||++|+.|.|+||+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK15057 347 SRLERDLATFKQQADVIISNRMAEELKDVA 376 (388)
T ss_pred CeeeCCHHHHHHhCCEEEEcCCcHHHHhhh
Confidence 778999999999999999999999998753
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=286.96 Aligned_cols=182 Identities=41% Similarity=0.624 Sum_probs=149.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+||+|+++|..||++ ||+|+++|+|+++++.+++|..|++|+++++++++. ..+++++++|.++++.+||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 999999999999999999999999999999999874 4799999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhcC-CCceEEeeCCcc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNSR-GINFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~-g~~~~v~~~Pe~ 158 (480)
++|+|||||.+.++ .+|++++++++++|+++++++++|+++||+||||+++ +.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998744 8999999999999999999999999999999999995 5678887764 478999999999
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDV 194 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l 194 (480)
+.||+++.++.+|++|++|.. ++.+.+++++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~----~~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCD----DESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEES----SHHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCC----cHHHHHHHhcC
Confidence 999999999999999988775 35555566654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=252.93 Aligned_cols=249 Identities=21% Similarity=0.223 Sum_probs=208.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||++||+|.||.|||.+|.++ ||+|++||+++++ ++.+... +.+..+++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999999 5555431 2455677888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||.+ ..+++++ ..+.+.+++++++|++||++|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999864 2356666 57889999999999999999999999999998875 24468998
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+....+ .||+||+ ++.+++++++|+.+++ ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666655444 5889986 8999999999999984 577888899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCc-------cc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPK-------FL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~-------~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|+..+.++++...--+|. ++ .+.|||.-..+.||+.+..+.|++.|++ .++...+.
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~~ 262 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALAA 262 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence 99999999999999876422221 11 3677899999999999999999999998 55555443
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=288.18 Aligned_cols=382 Identities=11% Similarity=0.072 Sum_probs=282.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|||+||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +.+.++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999998 99999999999999988752 23567789998999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .+++++ +++.+.++++++||++||+.|.+++++.+.+.+.+. ...++.+|..
T Consensus 64 Vi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAYVS 127 (1378)
T ss_pred EEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEccCc
Confidence 999998652 345554 578888899999999999999999999888877641 2345788887
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC-TNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+..+..... .+++||+ ++.+++++++|+.++. ..+++ ++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554433322 4788986 7899999999999874 34444 7899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHH-----h
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKV-----N 303 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~-----N 303 (480)
++.|+|++.++++++..+.-++ +++ .+.+||....+.||+.+..++|++.|++ .++...+.+. +
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~~~~a~~ 276 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQLISGSS 276 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHh
Confidence 9999999999999987642111 111 3566788899999999999999999998 5555544431 1
Q ss_pred h-----HhHHHHHHHHHHHhc-----------------------CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh
Q 011650 304 D-----YQKTRFVNRVVSSMF-----------------------NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG 355 (480)
Q Consensus 304 ~-----~~~~~~~~~~~~~~~-----------------------~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~ 355 (480)
. ... .+++.+.+..+ ++-..++|+++|+.. ....+++.|.+
T Consensus 277 ~G~g~~D~s-av~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~----------MG~~mA~~L~~ 345 (1378)
T PLN02858 277 SMQGDDTAT-SLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGA----------MGFGMASHLLK 345 (1378)
T ss_pred cCCCccChH-HHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchH----------HHHHHHHHHHH
Confidence 1 111 12221211000 111237899999865 89999999999
Q ss_pred CCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcc-cccc--cHHH
Q 011650 356 DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDE-FKNL--DYQK 432 (480)
Q Consensus 356 ~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~--~~~~ 432 (480)
.|++|.+||+.....+.... .+.....++.++++++|+|++++..++ .++. ....
T Consensus 346 ~G~~V~v~dr~~~~~~~l~~----------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 346 SNFSVCGYDVYKPTLVRFEN----------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCCEEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 99999999986543221111 123346788999999999999999654 2221 1123
Q ss_pred HHhhcCCCCEEEEcCCCCChH------HHhh--cCcEEEE
Q 011650 433 IYNNMQKPAFVFDGRNILDVE------KLRK--IGFIVYS 464 (480)
Q Consensus 433 ~~~~~~~~~~i~D~~~~~~~~------~~~~--~g~~y~~ 464 (480)
+...+++..+|||...+-+.. .+.+ .|+.|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD 443 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 445566666999998877542 2234 5777754
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=238.61 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=200.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.++|..|++. |++|++||+++++++.+.+. +...++++++++++||
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 57999999999999999999998 99999999999998877642 2345677888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+++++.+.+++.+ +.++++|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g----~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKG----IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcC----CcEEEcCC
Confidence 9999998642 234443 45778888999999999999999999888877653 24568898
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
+..+..+..+.. .+++|++ +++++++.++++.++. ..+++++.+.|+.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655443322 4778875 7789999999999864 466677889999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCC-------CCccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i-------~~~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++++.+...... ..+++ .+.+||...++.||..++.+++++.|++ .++++.+.+
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 264 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVME 264 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 99999999999999754210 01111 2457799999999999999999999998 566665443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=240.05 Aligned_cols=253 Identities=16% Similarity=0.144 Sum_probs=198.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. +...++++.+++++||
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999887752 1234567788889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||++. ++..+....+.+.+.++++++++++||++|.+++++.+.+.+.+ +.++.+|....
T Consensus 60 vVi~~vp~~~-----------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV~g~ 124 (296)
T PRK15461 60 FVITMLPNGD-----------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPVGRT 124 (296)
T ss_pred EEEEecCCHH-----------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccCCCC
Confidence 9999998642 12222222245677788999999999999999999988887754 23457887655
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+..+..... .+++||+ ++.+++++++|+.++. ..++.++.+.+..+|+++|.+...+++.++|...+|++.
T Consensus 125 ~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~ 195 (296)
T PRK15461 125 SDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEAL 195 (296)
T ss_pred HHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 443332221 3677875 7899999999999874 567788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCC-------C-ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 241 GADVSQVSHAIGFDSRIG-------P-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~-------~-~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|+|++.++++++..+..+ . .++ .+.++|....+.||+.+..+.+++.|++ .++.+.+.
T Consensus 196 Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~~ 263 (296)
T PRK15461 196 GLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAASR 263 (296)
T ss_pred CCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999987543110 1 111 2355788889999999999999999998 55555433
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=237.96 Aligned_cols=248 Identities=19% Similarity=0.212 Sum_probs=195.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||+|||+|.||.++|..|++. ||+|++||+++++++.+.+. + ...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g-~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA------------------G-AVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC------------------C-CcccCCHHHHHhcCCEE
Confidence 699999999999999999998 99999999999998887652 1 22345677788999999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||++. .++.++ ..+.+.++++++|++.||+.|.+++++.+.+++.+ . .++.+|...
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g--~--~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKG--I--DYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--CEEecCCCC
Confidence 99998632 223333 45667788899999999999999998888887653 2 345688876
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+..+.... ..+++|++ ++++++++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~---l~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGT---LSIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCC---EEEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544332 24778875 7899999999999874 46666777999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 240 TGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|+|++++.++++.....++ ++. .+.+||+..|+.||+.++.+.+++.|++ .++++.+.
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~ 260 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQ 260 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 99999999999985431111 111 2347899999999999999999999998 56666543
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-27 Score=231.65 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=197.0
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEE
Q 011650 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVS 85 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (480)
|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.+++++||+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999998 99999999999999888752 234567888889999999999
Q ss_pred ccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccC
Q 011650 86 VNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEG 162 (480)
Q Consensus 86 Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
||++. .+++++ +++.+.++++++||++||+.|++++++.+.+++.+ . .++.+|....+.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g--~--~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG--A--VFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--cEEECCCCCCHH
Confidence 99642 234555 67888889999999999999999999988887654 2 347889887665
Q ss_pred ccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 011650 163 TAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gi 242 (480)
.+..+.. .+++||+ ++.+++++++|+.++. ..+++++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5443322 4678885 6789999999999874 46677788999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCCc--------------c--ccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 243 DVSQVSHAIGFDSRIGPK--------------F--LNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 243 d~~~v~~~~~~~~~i~~~--------------~--~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
|++.+.++++..+.-++. . -.+.++|....+.||+.+..+.|++.|++ .++.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~ 264 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALAR 264 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999865311110 0 12345677778899999999999999998 55555443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=230.71 Aligned_cols=247 Identities=17% Similarity=0.178 Sum_probs=192.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. +.....++.++++.||+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999998 999999999874 3444321 23445677888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ ..+.+.+.++++||++||+.|.+++++.+.+++.+ .. ++.+|..
T Consensus 59 Vi~~v~~~--------------~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~--~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDT--------------PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GD--YLDAPVS 120 (292)
T ss_pred EEEeCCCh--------------HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CC--EEEecCC
Confidence 99999864 2344544 23566678899999999999999999988887764 23 3567866
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+..... .+++||+ ++.+++++++|+.++. ..+++++.+.+..+|+++|.+.+.++..+.|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443322211 4678885 7899999999999874 5678888999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCC-------CCccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQV 299 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i-------~~~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+.|+|+++++++++..+.- ..+++ .+.++|....+.||+.+..++|++.|++ .++.+.+
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~~ 259 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTATC 259 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHH
Confidence 9999999999998755311 11121 2346789999999999999999999998 5555443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=222.91 Aligned_cols=241 Identities=17% Similarity=0.225 Sum_probs=197.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++||+||+|.||.+|+.+|.+. ||.|++|||+.++++.+.+. +.++..+|.|+++.||+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 6899999999999999999999 99999999999999988863 24567789999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
||.|||+|.+. ++++ ..+...++++... |++||++|.+.+++.+.++... ...+.+|.
T Consensus 95 vitmv~~~~~v--------------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPV 156 (327)
T KOG0409|consen 95 VITMVPNPKDV--------------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPV 156 (327)
T ss_pred EEEEcCChHhh--------------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccc
Confidence 99999987543 3333 3344555676666 8999999999999988877653 24568898
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
......+....+ .|++||+ ++.++...++|+.+++ ..++.+..+.+..+|+++|...+.++..+.|...|+
T Consensus 157 SGg~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la 227 (327)
T KOG0409|consen 157 SGGVKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALA 227 (327)
T ss_pred cCCchhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544444443 4788875 8899999999999974 567788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCcccc---------CCCCccccchhhhHHHHHHHHHHCCCc
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLN---------ASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~---------pg~g~gG~c~~kD~~~l~~~a~~~g~~ 290 (480)
+++|+|...+++++++..--++.+.. +.|||+...+.||+......+.+.+.+
T Consensus 228 ~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 228 DRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999985311222222 445688889999999999999998887
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=197.76 Aligned_cols=106 Identities=42% Similarity=0.678 Sum_probs=88.2
Q ss_pred EEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChh
Q 011650 328 AILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAY 407 (480)
Q Consensus 328 ~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (480)
+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.+....... ..+++++++++
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-------------------~~~~~~~~~~~ 61 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK-------------------LEGVEVCDDLE 61 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-------------------HHCEEEESSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-------------------ccceEEecCHH
Confidence 69999999999999999999999999999999999999999887654210 13578889999
Q ss_pred hhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 408 EATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 408 ~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
++++++||+|++|+|++|+.++|+.+...|+++++|||+||+++|
T Consensus 62 ~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 62 EALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp HHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred HHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 999999999999999999999999999999777799999999986
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-26 Score=186.23 Aligned_cols=96 Identities=42% Similarity=0.697 Sum_probs=88.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCC
Q 011650 209 LWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNG 288 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g 288 (480)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|+++++++||++..++.||+||||+|||||+.+|.+.+++.|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHhhHh
Q 011650 289 LPEVANYWKQVIKVNDYQ 306 (480)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (480)
.+ ..++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 98 67999999999976
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=212.28 Aligned_cols=267 Identities=16% Similarity=0.114 Sum_probs=204.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.+||.+|+++ |++|++||+++++.+.+.+. +...+.+++++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999998887642 23456777776665
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|++ ..++++++.+.+.++++++||++||+.|.+++++.+.+++.+ ..++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999864 235677788888899999999999999999988888777653 245788887
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE--DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+-.+.... .+++||+ ++++++++++++.++.. ..++.++++.+..+|+++|.+...++..+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654443331 4788986 78999999999998631 35777889999999999999999999999999999
Q ss_pred HHHcC--CCHHHHHHHhcCCCCCCCc--------cccCCCCccccchhhhH---HHHHHHHHHCCCchhhhHHHHHH---
Q 011650 237 CEATG--ADVSQVSHAIGFDSRIGPK--------FLNASVGFGGSCFQKDI---LNLVYICECNGLPEVANYWKQVI--- 300 (480)
Q Consensus 237 ~~~~g--id~~~v~~~~~~~~~i~~~--------~~~pg~g~gG~c~~kD~---~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++.| +|+.+++++++.....++. +..-...+.-..+.||. .+.++.|++.|++ .+++..++
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~~~~ 270 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASLFMR 270 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 99999 9999999999854211111 11100112346778897 7889999999998 67777664
Q ss_pred --HHhhHhH-HHHHHHHHHHh
Q 011650 301 --KVNDYQK-TRFVNRVVSSM 318 (480)
Q Consensus 301 --~~N~~~~-~~~~~~~~~~~ 318 (480)
..|+.-+ ...++-+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~a~~~~f 291 (299)
T PRK12490 271 FASQEDDSFHMKVVSALRNQF 291 (299)
T ss_pred HHhCccCChHHHHHHHHHHhh
Confidence 3444444 45555555544
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=248.94 Aligned_cols=252 Identities=13% Similarity=0.107 Sum_probs=200.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++|||||+|+||.+||.+|+++ ||+|++||+++++++.+... + ....+++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~------------------G-a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA------------------G-GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CeecCCHHHHHhcCC
Confidence 37899999999999999999998 99999999999999887642 1 234567888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||+|.. +++++ .++.+.++++++||++||+.|++++++.+.+++.+ ..+.++.+|.
T Consensus 383 vVi~~V~~~~~--------------v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEVQ--------------AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChHH--------------HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 99999997632 34443 45677788999999999999999999988887732 2345678887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC-TNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
...+..+..... .+++||+ ++.+++++++|+.++. ..++. ++++.|+.+|+++|.+.+.+++.++|+..+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654433322 4788986 7899999999999874 34443 579999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 237 CEATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+++.|+|++.++++++....-++ +++ .+.++|....+.||+.+..+.+++.|++ .++...+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~ 588 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAH 588 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999998875532111 111 2456788899999999999999999998 45544443
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=222.31 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=199.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE-- 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
+++|||||+|.||.+||.+|+++ ||+|++|||++++++.+.+.... .|. ..+..+.+++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~Ga---------~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EGN---------LPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cCC---------cccccCCCHHHHHhcCC
Confidence 47899999999999999999998 99999999999999988752000 000 113356788887765
Q ss_pred -CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 -ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||.+ ..+++++.++.+.+.+|++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 346777788999999999999999999999999888887764 34568887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE-----DRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
...+..+..+ +.+++||+ ++++++++++++.++.. ..+++++.+.+..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G----~~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG----PSLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC----CeEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766544322 26889986 88999999999998731 2567788999999999999999999999999
Q ss_pred HHHHHHH-cCCCHHHHHHH---hcCCCCCCC------ccc----cCCCCccccchhhhHH------HHHHHHHHCCCchh
Q 011650 233 MSALCEA-TGADVSQVSHA---IGFDSRIGP------KFL----NASVGFGGSCFQKDIL------NLVYICECNGLPEV 292 (480)
Q Consensus 233 ~~~l~~~-~gid~~~v~~~---~~~~~~i~~------~~~----~pg~g~gG~c~~kD~~------~l~~~a~~~g~~~~ 292 (480)
...++++ .|+|++++.++ ++.++--++ ..+ ..+++|-...+.||.. .....|.++|++
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999999888 455431111 111 1355688889999999 899999999998
Q ss_pred hhHHH
Q 011650 293 ANYWK 297 (480)
Q Consensus 293 ~~~~~ 297 (480)
.+++.
T Consensus 283 ~p~i~ 287 (493)
T PLN02350 283 APTIA 287 (493)
T ss_pred ccHHH
Confidence 56533
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=200.16 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=201.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+. +.+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 6999999999999999999998 99999999999999887642 24556777776664
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+|.+. .+++++..+.+.++++++||+.||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG----IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC----CEEEeCCCC
Confidence 699999998641 34667778888899999999999999999888887777654 234578877
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC---CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE---DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+..+... ..+++||+ ++++++++++|+.+... ..++.++.+.+..+|+++|++...++..+.|...
T Consensus 122 G~~~~a~~g----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERG----YCLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcC----CeEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665444333 15788986 78999999999998741 3577889999999999999999999999999999
Q ss_pred HHHH--cCCCHHHHHHHhcCCCCCCCccc-------cCCCCcc-ccchhhh---HHHHHHHHHHCCCchhhhHHHHHHH-
Q 011650 236 LCEA--TGADVSQVSHAIGFDSRIGPKFL-------NASVGFG-GSCFQKD---ILNLVYICECNGLPEVANYWKQVIK- 301 (480)
Q Consensus 236 l~~~--~gid~~~v~~~~~~~~~i~~~~~-------~pg~g~g-G~c~~kD---~~~l~~~a~~~g~~~~~~~~~~~~~- 301 (480)
++++ .|+|+.++.++++...-+++.++ .-.+.+. -.-+.|| .+.....|.+.|++ .+.+..+..
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a~~~ 270 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAALFM 270 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 9999 99999999999986532222111 1112221 1123455 47788899999998 666665321
Q ss_pred -----HhhHhHHHHHHHHHHHhc
Q 011650 302 -----VNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 302 -----~N~~~~~~~~~~~~~~~~ 319 (480)
.+...+...++-+.+.++
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 271 RFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHhccCCCcHHHHHHHHHHhcC
Confidence 233456666666666553
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=207.12 Aligned_cols=281 Identities=18% Similarity=0.212 Sum_probs=198.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++++++.+++.. ...+.++.. ...++.+++++++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 89999999999999999999998 999999999999999888742 222222210 113467788888878899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCC-CceEEeeCCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRG-INFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (480)
|+||+|||++ .+.++++++.+.++++++|+..+ |+.+.+.+.+.+.+++.... ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 35778888999888899888776 88888777777777664321 1345567787
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-----------------HHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV-----------------SKLAAN 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~-----------------~Kl~~N 220 (480)
...+..+ ..+..+++++. +.+..+++.++|+..+. .+....+....+| .|+..|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6543221 12233455554 47889999999997642 2344456555555 678889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC----CCC--CccccCCCCccc--------------cchhhhHHHH
Q 011650 221 AFLAQRISSVNAMSALCEATGADVSQVSHAIGFDS----RIG--PKFLNASVGFGG--------------SCFQKDILNL 280 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~----~i~--~~~~~pg~g~gG--------------~c~~kD~~~l 280 (480)
.+.++....++|+..+|+++|+|++.+.+.++... ..+ .+...||.-++. .-..||..++
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 99999999999999999999999999988754320 001 111112211211 2346999999
Q ss_pred HHHHHHCCCchhhhHHHHHHH--HhhHhHHHHHHHHH
Q 011650 281 VYICECNGLPEVANYWKQVIK--VNDYQKTRFVNRVV 315 (480)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~ 315 (480)
.++++++|++ .|+.+.+.+ .|+.-|+.+++++.
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~ 323 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLM 323 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 9999999998 677777654 46666777666653
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-21 Score=189.48 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=195.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH---Hhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK---HVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.. .....++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-------------------TTGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-------------------CcccCCHHHHHhhcCC
Confidence 7999999999999999999998 999999999999999887632 111233433 2456
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||+. .+.++++++.+.++++++||+.||..+.++.++...+++.+ +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g----~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG----IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC----CeEEecCCC
Confidence 89999999853 35778889999999999999999998888888777776643 234567765
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE--DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
..+..+... ..+++||+ +++++.++++|+.+... ..++.++.+.+..+|+++|.+...++....|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333322 25788885 78999999999998742 35778889999999999999999999999999999
Q ss_pred HHHc--CCCHHHHHHHhcCCCCCCCccc---------cCCC-Ccccc-chhhhHHHHHHHHHHCCCchhhhHHHHHH---
Q 011650 237 CEAT--GADVSQVSHAIGFDSRIGPKFL---------NASV-GFGGS-CFQKDILNLVYICECNGLPEVANYWKQVI--- 300 (480)
Q Consensus 237 ~~~~--gid~~~v~~~~~~~~~i~~~~~---------~pg~-g~gG~-c~~kD~~~l~~~a~~~g~~~~~~~~~~~~--- 300 (480)
+++. |+|.+++.++++...-+.+.++ .|.. .|-.. --.+|.+..+..|.+.|+| .+.+.+++
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al~~~ 269 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSLQSR 269 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 9997 5799999999987642222221 1110 12111 1334566777788888988 66666544
Q ss_pred --HHhh-HhHHHHHHHHHHHhc
Q 011650 301 --KVND-YQKTRFVNRVVSSMF 319 (480)
Q Consensus 301 --~~N~-~~~~~~~~~~~~~~~ 319 (480)
..+. ..|..+++-....++
T Consensus 270 ~~~~~~~~~~~~~~~~~r~~fg 291 (298)
T TIGR00872 270 FASRDLDDFANKVLAALRKEFG 291 (298)
T ss_pred HHhCCCCCcHHHHHHHHHHhhC
Confidence 2233 556777776555543
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=198.38 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=170.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh---
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
|++|+|||+|.||.+||.+|+++ ||+|++||+++++++.+++.... ++ ..+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---GN----------TRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---cC----------CcceecCCHHHHHhcCC
Confidence 67999999999999999999998 99999999999999988752100 00 12456778888775
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||.+ ..++++++++.+++.++++||+.||..+..+.+....+.+.+ +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G----i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG----ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEcCCC
Confidence 489999999743 356788899999999999999999998777777666666654 34567887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC-----CeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE-----DRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
...+..+.. .+.+++||+ ++++++++++|+.+... ...++++.+++..+|+++|.+....+..+.|
T Consensus 128 SGG~~gA~~----G~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARY----GPSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhc----CCEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 766544432 236899996 88999999999998742 1467788899999999999999999999999
Q ss_pred HHHHHH-HcCCCHHHHHHHhc
Q 011650 233 MSALCE-ATGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~-~~gid~~~v~~~~~ 252 (480)
...+++ +.|+|++++.+++.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 79999999988873
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=177.97 Aligned_cols=221 Identities=23% Similarity=0.278 Sum_probs=177.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||.|.||+++|..|+++ ||+|.+|.++++.++++++. .++-|.|+.. ...++.+++|+++++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 3555655542 245789999999999999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+|+++||+ ..+.++++++.++++++++++..|. +.+++.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs---------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPS---------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECCh---------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 999999986 3578899999889999999888885 588888889998888754334788899998
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHH-----------------HHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVS-----------------KLAANA 221 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~-----------------Kl~~N~ 221 (480)
..+-.. ..|+.+++++. +++..++++.+|..-. ..++...|+...|.. ++-.|+
T Consensus 138 A~EVa~----g~pta~~vas~----d~~~a~~v~~~f~~~~-Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~Na 208 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASN----DQEAAEKVQALFSSPY-FRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNA 208 (329)
T ss_pred HHHHhc----CCCcEEEEecC----CHHHHHHHHHHhCCCc-EEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhH
Confidence 876332 34677888887 5888999999998732 123444676665554 455678
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011650 222 FLAQRISSVNAMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~ 253 (480)
-.++....++||.++...+|.+++++....+.
T Consensus 209 kaalitrGL~Em~rlg~~lG~~~~T~~gLsGl 240 (329)
T COG0240 209 KAALITRGLAEMTRLGVALGAKPETFMGLSGL 240 (329)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence 88888899999999999999999988877664
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=169.17 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=120.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+++.+. +.+.+++++++++.||
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 89999999999999999999998 99999999999999988752 4778899999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHH--HHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARM--IADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~--i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||.+ ..+++++.+ +.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 456788888 999999999999999999999999999888764 455677766
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
..+..+..... .+++||+ ++++++++++|+.++.
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMGK 155 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHEE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHhC
Confidence 55433332221 4788986 7899999999999863
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=186.97 Aligned_cols=206 Identities=12% Similarity=0.142 Sum_probs=163.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh---hcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV---REA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~a 79 (480)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... + ..+..++++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~----g----------~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK----G----------KKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC----C----------CCceecCCHHHHHhhcCCC
Confidence 489999999999999999998 99999999999999988752100 0 1234455666644 468
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ ..+.++++++.++++++++||+.||+.+..+.+..+.+.+.+ +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g----i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG----ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC----CEEEcCCCCC
Confidence 9999999853 246778889999999999999999987777766666666543 3456788776
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC-----eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED-----RILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-----~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.+..+..+ +.+++||+ ++++++++++|+.+.... .+++++.+++..+|+++|.+....+..+.|..
T Consensus 127 G~~gA~~G----~~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKG----PSIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcC----CcCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65444333 25788986 789999999999987421 35778889999999999999999999999999
Q ss_pred HHHH-HcCCCHHHHHHHh
Q 011650 235 ALCE-ATGADVSQVSHAI 251 (480)
Q Consensus 235 ~l~~-~~gid~~~v~~~~ 251 (480)
.+++ +.|+|..++.+++
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 7999999998888
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-19 Score=178.25 Aligned_cols=275 Identities=15% Similarity=0.106 Sum_probs=185.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|.||.++|..|+++ ||+|++|++++++.+.+++.. ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999998 999999999999988887532 111111210 012366788888888999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCccc--HHHHHHHHHhhcCCCceEEeeCC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKT--AEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
|+||+|||+. .+++ +.+.++++.+++..+| +.+.+ .+.+.+.+++... ..+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~----v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRE----TLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ-ARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHH----HHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcC-CCeEEEECc
Confidence 9999999853 1233 3355667788887777 56554 5667776654110 123445677
Q ss_pred cccccCccccccCCCC-eEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCc-----------------hhHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPD-RVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNL-----------------WSAEVSKLA 218 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~-~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-----------------~~ae~~Kl~ 218 (480)
....+...- .+. .++.|+ +++..++++++|+..+. ..+...|+ +.+...|+.
T Consensus 136 ~~a~~~~~~----~~~~~~~~~~-----~~~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIARF----LPAATVVASP-----EPGLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHcC----CCeEEEEEeC-----CHHHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 665442211 111 234444 37789999999998642 23322333 445556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC-------CCCCCcc------cc------CCCCccccchhhhHHH
Q 011650 219 ANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFD-------SRIGPKF------LN------ASVGFGGSCFQKDILN 279 (480)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~-------~~i~~~~------~~------pg~g~gG~c~~kD~~~ 279 (480)
+|...++..+.++|+..+++++|+|++++++.++.. +..+.++ .. ..++|...-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 889889999999999999999999999999987741 1111111 11 1123445567899999
Q ss_pred HHHHHHHCCCchhhhHHHHHHHH--hhHhHHHHHHHHH
Q 011650 280 LVYICECNGLPEVANYWKQVIKV--NDYQKTRFVNRVV 315 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (480)
+..++++.|++ .++++.+.++ |+.-|+..++.++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLM 321 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999988 6777776542 3345666666654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=167.31 Aligned_cols=247 Identities=15% Similarity=0.060 Sum_probs=164.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|+|||+|.||.++|..|+++ |++|++||++++.++..++.. ..+.+...+.. .+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~-----~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAV-----LARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH-----hcCeEEEC
Confidence 68999999999999999999998 999999999998877644210 00000001111 24578899
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCce
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINF 150 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
++++++++||+|++|+|+.. ......++.+.+..+++.++ .+||.+ -...++++.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~ii-~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHAIL-ASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcceE-EEeCCC-CCHHHHHHhcCCc----cc
Confidence 99988899999999998642 12245566676666655544 445543 3445565554332 22
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+++.+|-. +.... +-..++++..+ ++++++++.++++.+++ .+++++....+. +.|. +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~t--~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~----i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPWT--APATLARAEALYRAAGQ-SPVRLRREIDGF----VLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEecCCCccH----HHHH---HHHHHH
Confidence 45566642 22111 11235664433 58899999999999874 455554333332 4443 466899
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCccc-------cCCCCccccchhhhHHHHHHHHHHCCCc
Q 011650 231 NAMSALCEATGADVSQVSHAIGFDSRIGPKFL-------NASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~-------~pg~g~gG~c~~kD~~~l~~~a~~~g~~ 290 (480)
+|+..++++.|+|++++.+++......++.+. ..++||-...+.||..+..+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999976543221111 2345566678899999999998888876
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=165.15 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=169.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999998 999999998742 245567889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
||+|+|+. .+.++++.+.++ ++++++|+.+|+ +.|.+.+.+...+........+.+..+|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 356777788764 677888888776 7777766666655543222233344666543
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH-----------------HHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV-----------------SKLAANAF 222 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~-----------------~Kl~~N~~ 222 (480)
.+- .. ..+..+++++. +.+..+.++++|+..+. ..+...|+...++ .|+..|..
T Consensus 116 ~ei---~~-~~~~~~~~ag~----~~~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~ 186 (308)
T PRK14619 116 KEI---QQ-GLPAATVVASR----DLAAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAK 186 (308)
T ss_pred HHH---hc-CCCeEEEEEeC----CHHHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHH
Confidence 220 00 01122333443 37889999999998642 2343445333232 34677888
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC------C-CCCccccCCCCccccch----------------hhhHHH
Q 011650 223 LAQRISSVNAMSALCEATGADVSQVSHAIGFDS------R-IGPKFLNASVGFGGSCF----------------QKDILN 279 (480)
Q Consensus 223 ~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~------~-i~~~~~~pg~g~gG~c~----------------~kD~~~ 279 (480)
.++....++|+..+++++|+|+..+++..+... . .+.++ . +||...-. .||...
T Consensus 187 ~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~-~--~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~ 263 (308)
T PRK14619 187 AALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNY-Q--VGYGLAQGKSLEQILAELEGTAEGVNTANV 263 (308)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccH-H--HHHHHHCCCCHHHHHHhcCCEeecHHHHHH
Confidence 888999999999999999999999987533221 0 01111 1 22211122 689999
Q ss_pred HHHHHHHCCCchhhhHHHHHHH--HhhHhHHHHHHHHHH
Q 011650 280 LVYICECNGLPEVANYWKQVIK--VNDYQKTRFVNRVVS 316 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~~ 316 (480)
+.+++++.|++ .++.+.+.+ .|+.-|+.+++.+++
T Consensus 264 ~~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 264 LVQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELME 300 (308)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 99999999998 777777654 344456666666544
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=170.91 Aligned_cols=197 Identities=13% Similarity=0.154 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---CCEEEEEccC
Q 011650 12 VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE---ANIVFVSVNT 88 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~---aDvVii~Vpt 88 (480)
||.+||.+|+++ ||+|.+||+++++++.+.+.... ..+++.+.+++++++. +|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 0236778889987764 8999999986
Q ss_pred CCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCcccccc
Q 011650 89 PTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDL 168 (480)
Q Consensus 89 p~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~ 168 (480)
+ ..+.+++.++.+.+.+|++||+.||+.+..+++..+.+++.+ +.++.+|....+..+..+
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~G----i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKG----IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CeEEecCCCCCHHHHhcC-
Confidence 4 346788889999999999999999998888888777777654 345688877765444332
Q ss_pred CCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC
Q 011650 169 FKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED------RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE-ATG 241 (480)
Q Consensus 169 ~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~g 241 (480)
+.+|+||+ ++++++++++|+.+.... ..++++.+.+..+|+++|.+....+..+.|...+++ ++|
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G 197 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG 197 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36889996 889999999999987421 167788899999999999999999999999999999 599
Q ss_pred CCHHHHHHHh
Q 011650 242 ADVSQVSHAI 251 (480)
Q Consensus 242 id~~~v~~~~ 251 (480)
+|..++.+++
T Consensus 198 l~~~~l~~v~ 207 (459)
T PRK09287 198 LSAEEIADVF 207 (459)
T ss_pred CCHHHHHHHH
Confidence 9999998888
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-17 Score=163.56 Aligned_cols=265 Identities=12% Similarity=0.037 Sum_probs=182.4
Q ss_pred ceEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh
Q 011650 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC 61 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~ 61 (480)
|||+|.|.|+ -|.+||.+|+++ ||+|++||++++..+.-+ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~----------~~~l---- 64 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEEL----------WKKV---- 64 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHH----------HHHH----
Confidence 7999999994 589999999998 999999999987543200 0001
Q ss_pred cCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-HHHHHH
Q 011650 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEKI 140 (480)
Q Consensus 62 ~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~~ 140 (480)
...+++++++..+++++||+||+|+|++. .++++++.+.+.++++++|++.||+++.+. +.+.+.
T Consensus 65 ~~~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~ 130 (342)
T PRK12557 65 EDAGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGE 130 (342)
T ss_pred HHCCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 01346777888888899999999998531 257788899999999999999999988876 566666
Q ss_pred HHhhcCCCceEEeeCCcccccCccccccCCCCeEEEEcc---CCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHH
Q 011650 141 LMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGR---ETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKL 217 (480)
Q Consensus 141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl 217 (480)
+........+ ..+.|-.. +|.....+ .++.|+. ....+++.+++++++++.++ ..+++.+.+.+..+|+
T Consensus 131 l~~~~~~~gi-~~~~p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g~~~~vk~ 202 (342)
T PRK12557 131 LRTKRKDVGI-SSMHPAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPADVVSAVAD 202 (342)
T ss_pred hcccccccCe-eecCCccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHH
Confidence 6432110111 11223211 12111111 2444431 11124788899999999986 3556677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHH
Q 011650 218 AANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWK 297 (480)
Q Consensus 218 ~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~ 297 (480)
++|.+.++.++...|...++++.|.++.++.+-+....-.+...+--..|+.|--=.-||..|+..|+...+.+..+.+.
T Consensus 203 ~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (342)
T PRK12557 203 MGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQKDLD 282 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhhhhHH
Confidence 99999999999999999999999999999888665443111111111223444433458999999999988766666777
Q ss_pred HHHHHhh
Q 011650 298 QVIKVND 304 (480)
Q Consensus 298 ~~~~~N~ 304 (480)
.++++=+
T Consensus 283 ~~~~~~~ 289 (342)
T PRK12557 283 AALEILE 289 (342)
T ss_pred HHHHHHH
Confidence 6665443
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-17 Score=163.95 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=163.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC-CCCC-ChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLP-IYEP-GLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~-~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||+.+|..|+++ | +|++|.++++.++.+++.+.. .+.+ +. . ...++.+++|+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~-----l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDV-V-----LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-c-----cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 688999999999999985432 2222 11 0 12457889999888899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||+. .++++++++.++++++++|+..+ .++.++.+.+.+.+++...+..+.+..+|.
T Consensus 78 aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 99999999852 46889999999998887665443 567777666767776543223456778888
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHH-----------------
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAAN----------------- 220 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N----------------- 220 (480)
+..+... ..+..+++++. +++..+.++++|+.-. ...+...|+...||.|.+.|
T Consensus 143 ~a~ev~~----g~~t~~via~~----~~~~~~~v~~lf~~~~-~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n 213 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMP----DQHLATRLSPLFRTRR-FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGEN 213 (341)
T ss_pred HHHHHHc----CCCeEEEEEeC----CHHHHHHHHHHhCCCC-EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 7664221 12344667776 4778899999998743 12445579999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011650 221 AFLAQRISSVNAMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~ 253 (480)
+..++....++|+.++++.+|.+++++....+.
T Consensus 214 ~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 214 TRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 334556678999999999999999988876654
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=164.24 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=165.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCC-CChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYE-PGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e-~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++. .+.+++....+.. .+.+.. ...++++++++++ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARI-GDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHH-HHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 68999999999999999999998 999999999754 4667664333221 111110 0123466677774 57899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+..+....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 256778888888888877654 4566666666666543210 000011111233
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHH-------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQR------------- 226 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (480)
.||...... ..++.++.. +..+.+.++|+..+. ...+..|+..+.|.|++.|++..+.
T Consensus 138 ~pg~~~~~~--~g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQGT--SGALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEecC--CCceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 445442211 123455532 346788899987652 4566789999999999999755444
Q ss_pred -------HHHHHHHHHHHHHcCCCHHHHHHHhcCCC--------C----CCCccccCCCCccccchhhhHH---------
Q 011650 227 -------ISSVNAMSALCEATGADVSQVSHAIGFDS--------R----IGPKFLNASVGFGGSCFQKDIL--------- 278 (480)
Q Consensus 227 -------ia~~nE~~~l~~~~gid~~~v~~~~~~~~--------~----i~~~~~~pg~g~gG~c~~kD~~--------- 278 (480)
...+.|...++++.|+++..+.++..... . +.......... ....+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 37899999999999998654332211110 0 00000100110 1357999999
Q ss_pred ---HHHHHHHHCCCchhhhHHHH
Q 011650 279 ---NLVYICECNGLPEVANYWKQ 298 (480)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~~ 298 (480)
++++.|+++|++ .++.+.
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~~ 308 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNAR 308 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHHH
Confidence 799999999998 554443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=159.24 Aligned_cols=212 Identities=19% Similarity=0.196 Sum_probs=146.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-----HhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-----QCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-----~~~~~~l~~t~d~~~a 75 (480)
+.||+|||+|.||..+|.+|+.+ |++|++||++++..+.+.+... ..++.+.+ ....++++++++++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHH
Confidence 36899999999999999999998 9999999999987765432100 00111100 0112467889999988
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCceEEe
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINFQIL 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+++||+|+.|||+. .+++ ...++++.+.+++++ |+.+||.+. ...+++..+..... +.+|
T Consensus 81 v~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~Hf--- 142 (321)
T PRK07066 81 VADADFIQESAPER-----------EALK--LELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHP--- 142 (321)
T ss_pred hcCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEec---
Confidence 99999999999863 4555 667789999999988 445556532 22334443322111 1121
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
|+|....|- -.|| .+..| ++++.+.+.++++.+++ .++.+. -+...++.| .+..++++|+
T Consensus 143 fnP~~~~pL---------VEVv-~g~~T--~~e~~~~~~~f~~~lGk-~pV~v~----kd~pGFi~N---Rl~~a~~~EA 202 (321)
T PRK07066 143 FNPVYLLPL---------VEVL-GGERT--APEAVDAAMGIYRALGM-RPLHVR----KEVPGFIAD---RLLEALWREA 202 (321)
T ss_pred CCccccCce---------EEEe-CCCCC--CHHHHHHHHHHHHHcCC-EeEecC----CCCccHHHH---HHHHHHHHHH
Confidence 455544331 1344 44434 79999999999999874 455542 134457778 5788999999
Q ss_pred HHHHHHcCCCHHHHHHHhcCCCC
Q 011650 234 SALCEATGADVSQVSHAIGFDSR 256 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~~~~~ 256 (480)
..+.++..++++++..++..++.
T Consensus 203 ~~lv~eGvas~edID~a~~~g~g 225 (321)
T PRK07066 203 LHLVNEGVATTGEIDDAIRFGAG 225 (321)
T ss_pred HHHHHhCCCCHHHHHHHHHhCCC
Confidence 99999999999999999886653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=161.55 Aligned_cols=212 Identities=19% Similarity=0.276 Sum_probs=147.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChH-----HHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLE-----EVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~-----~~~~~~~~~~l~~t~d~~~a 75 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++...+..+++.+ +.-.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57899999999999999999998 999999999999998876532111111100 00000012467889999888
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--CCceEE
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--GINFQI 152 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (480)
+++||+||+|+|++. + ....++.++.+.+++++++ +++||+++.... +.++.... |.+|
T Consensus 79 ~~~aD~Vi~avpe~~-----------~--~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~---~~~~~~~r~~g~h~-- 140 (288)
T PRK09260 79 VADADLVIEAVPEKL-----------E--LKKAVFETADAHAPAECYIATNTSTMSPTEIA---SFTKRPERVIAMHF-- 140 (288)
T ss_pred hcCCCEEEEeccCCH-----------H--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH---hhcCCcccEEEEec--
Confidence 999999999998642 1 2255677888889999876 788999886533 33322111 2222
Q ss_pred eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 153 LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
++|....+ + ..|+++..+ ++++++++.++++.++. .++++. +...++.| .+..+++||
T Consensus 141 -~~Pv~~~~------L----ve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~-----d~~Gf~~n---Rl~~~~~~e 198 (288)
T PRK09260 141 -FNPVHKMK------L----VELIRGLET--SDETVQVAKEVAEQMGK-ETVVVN-----EFPGFVTS---RISALVGNE 198 (288)
T ss_pred -CCCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEec-----CcccHHHH---HHHHHHHHH
Confidence 25653321 1 245666433 58899999999999874 455554 44456677 456789999
Q ss_pred HHHHHHHcCCCHHHHHHHhcCC
Q 011650 233 MSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~~~ 254 (480)
...+.++...+++++..++...
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHhC
Confidence 9999988768999999988654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=158.20 Aligned_cols=218 Identities=16% Similarity=0.169 Sum_probs=162.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC--------CeEEEEeC-----CHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS--------IEVAVVDI-----SVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G--------~~V~~~D~-----~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
||+|||.|.||+++|..|+++ | |+|++|.+ +++..+.+++.+ ++.+.|+.. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 777888888753 344444432 1346889
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcc--cHHHHHHHHHhhc
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVK--TAEAIEKILMHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~g--t~~~l~~~l~~~~ 145 (480)
++|+++++++||+||++||+ ..++++++++.++++++++++..+. +.+. +...+.+++++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 3467889999999988887776664 4555 6666777776644
Q ss_pred CCCceEEeeCCcccccCccccccCCCCeEEEEccCCcch----HHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-----
Q 011650 146 RGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEG----MKAIKALKDVYAHWVPEDRILCTNLWSAEVSK----- 216 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~----~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K----- 216 (480)
+..+.++++|.+..+-.. ..|..+++++. + .+..+.++++|+.-. ...+...|+...|+..
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~----~~~~~~~~a~~~~~lf~~~~-frv~~s~Dv~GvEl~galKNv 207 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYR----DPADFDVDARVLKALFHRPY-FRVNVVDDVAGVEIAGALKNV 207 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeC----CCcchHHHHHHHHHHhCCCC-EEEEEcCCcccchhhHHHHHH
Confidence 346778899988765321 34667778876 4 678899999998632 1233346776666544
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHhcC
Q 011650 217 ------------LAANAFLAQRISSVNAMSALCEATGADVS--QVSHAIGF 253 (480)
Q Consensus 217 ------------l~~N~~~~~~ia~~nE~~~l~~~~gid~~--~v~~~~~~ 253 (480)
+-.|+..++....++||.++++.+|.+++ +++...+.
T Consensus 208 ~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 208 VAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 33577778888899999999999998766 66655543
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=158.41 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=163.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcC-CCCCCCCChHHHHHHhcCCCEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVP-----RINAWNSD-QLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++. .++.+.|+.. ...++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999986 48888864 3555666653 2357899
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh--hCCCCcEEEEecC-CCcccH--HHHHHHHHh
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD--VSKSDKIVVEKST-VPVKTA--EAIEKILMH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~--~l~~~~iVi~~ST-v~~gt~--~~l~~~l~~ 143 (480)
++|+++++++||+|+++||+ ..+.++++++.+ +++++++||..+. +.+.+. ..+.+++++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 246788999988 7777777765553 444443 445666655
Q ss_pred hcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-------
Q 011650 144 NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK------- 216 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------- 216 (480)
.. +..+.++++|.+..+-.. ..|..+++++. +.+..+.++++|+.-. ...+...|+...|+..
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~----~~~~a~~~~~lf~~~~-frvy~s~Dv~GvEl~galKNviA 218 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCE----DKDDALIWQRLFDRPY-FKINCVPDVIGVEVCGALKNIIA 218 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCc-EEEEEcCCcccchhhHHHHHHHH
Confidence 43 235777899988765321 34667888887 5888899999998632 1233446766655543
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHhcC
Q 011650 217 ----------LAANAFLAQRISSVNAMSALCEATGA--DVSQVSHAIGF 253 (480)
Q Consensus 217 ----------l~~N~~~~~~ia~~nE~~~l~~~~gi--d~~~v~~~~~~ 253 (480)
+-.|+..++....++||.++++.+|. ++++++...+.
T Consensus 219 Ia~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~ 267 (365)
T PTZ00345 219 LAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGL 267 (365)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchH
Confidence 44678888888899999999999974 88888876664
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-16 Score=141.92 Aligned_cols=210 Identities=16% Similarity=0.207 Sum_probs=152.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH---hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH---VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
|+|++||||.||..++.+|.+. ||+|++||+|++.++.+.... .+.++++++. +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 7999999999999999999998 999999999999999988632 2223333332 346
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
..+|.++||... .+.++++++++.|.++.+||+-...-..-+.+-.+.+++.+ .+| +.+-..
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg--i~f--lD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG--IHF--LDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC--CeE--EeccCC
Confidence 689999998531 24788999999999999999754222111222233455443 333 232221
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC--CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE--DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
... ......-.+||||+ +++.+++.++|+.+.++ .-.+++..+++...|+++|-.-.-.++...|-..+
T Consensus 122 GG~----~G~~~G~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGV----WGAERGYCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCc----hhhhcCceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 111 11222335789996 88999999999987652 23456788999999999999888888888999999
Q ss_pred HHHc--CCCHHHHHHHhcCCCCCCC
Q 011650 237 CEAT--GADVSQVSHAIGFDSRIGP 259 (480)
Q Consensus 237 ~~~~--gid~~~v~~~~~~~~~i~~ 259 (480)
.+.. ..|.++|.+..+..+-|++
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIrS 217 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIRS 217 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHHH
Confidence 8874 7889999999999876654
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=167.36 Aligned_cols=208 Identities=19% Similarity=0.199 Sum_probs=142.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-------CCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-------QLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-------~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+|||+|||+|.||.++|..|+++ |++|++||+++++.+.+.+. ...+.... + ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~---~---~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAP---L---PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccch---h---hhhhceEeeCCHH
Confidence 47999999999999999999998 99999999999988765421 00000000 0 0124578899998
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEe
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQIL 153 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
+++++||+||+|+|+.. +++ ...++++.+.+++++ |+.+||..+..+ .+.+.+...+ -.+.
T Consensus 76 ea~~~aD~Vieavpe~~-----------~vk--~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~~----r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DLK--RRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHPE----RLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HHH--HHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCcc----eEEE
Confidence 88999999999998642 222 456677888888776 456677765543 4444443221 2334
Q ss_pred eCC---cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH-HHHHHH
Q 011650 154 SNP---EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL-AQRISS 229 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~-~~~ia~ 229 (480)
.+| ....+ -..++++..+ +++..+++.++|+.++. .+++.. |.+.|... .+..++
T Consensus 137 ~hP~nP~~~~~----------Lvevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 137 AHPYNPVYLLP----------LVELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLLEAL 195 (495)
T ss_pred EecCCCcccCc----------eEEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHHHHH
Confidence 444 33222 1245666533 68899999999999874 445443 34444433 345666
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCC
Q 011650 230 VNAMSALCEATGADVSQVSHAIGFDSR 256 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~~~~~ 256 (480)
++|+..++++.|+|++++.++++..+.
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~g 222 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSFG 222 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhccC
Confidence 799999999999999999999987753
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-15 Score=149.98 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=143.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++.+++.+ ...+.++.. ...++++++++.+++ ..+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999998 999999999999999998743 111112210 113567888888766 589
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCCCcEEE-EecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKSDKIVV-EKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
|+||+|||+. .+.++++++.+ ++.+++.|+ ....+...+.....+.+.+..+...+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999852 36788899988 887776554 333443332212223333322112334455776
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH---------------
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF--------------- 222 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~--------------- 222 (480)
+..+... ..+..+++++. +.+..+.+.++|+.-. .......|+...+|.|++.|++
T Consensus 138 ~a~~~~~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~-~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQ----NETLGSSLISKLSNEN-LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred HHHHHHc----CCCcEEEEecC----CHHHHHHHHHHHCCCC-eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 5433211 13445666665 3556777888887643 1234457999999999998753
Q ss_pred --HHHHHHHHHHHHHHHHHcCC--CHHHHH
Q 011650 223 --LAQRISSVNAMSALCEATGA--DVSQVS 248 (480)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~gi--d~~~v~ 248 (480)
..+....++|+..+++.+|. ++++++
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~ 238 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLI 238 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhh
Confidence 23345688999999999987 778775
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=161.90 Aligned_cols=203 Identities=18% Similarity=0.210 Sum_probs=143.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH------------cCCCCCCCCChHHHHHHhcCCCEEEe
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN------------SDQLPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~g~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||.+||.+|+.+ |++|++||++++.+++.. +|... +...+.. ..+++.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~--~~~~~~~-----~~~i~~~ 78 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLT--AEQADAA-----LARLRPV 78 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHH-----HhCeEEe
Confidence 5799999999999999999998 999999999999988742 12111 1111111 2468899
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+++++ +.+||+||.|||+.. +++ ..++.++...+++++++ +++||+++.. ++..+.....
T Consensus 79 ~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~~---la~~~~~p~r~~ 141 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSITA---IAAALKHPERVA 141 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEE
Confidence 99976 789999999998642 333 44567788888889988 5889998852 4333322111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHH
Q 011650 147 GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| ++|....+ + ..|+++..+ ++++++.+.++++.+++ .++++.+... ++.|.+ .
T Consensus 142 G~hf---f~Pa~v~~------L----vEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nrl---l 197 (507)
T PRK08268 142 GLHF---FNPVPLMK------L----VEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG-----FIVNRA---A 197 (507)
T ss_pred EEee---cCCcccCe------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC-----hHHHHH---H
Confidence 3333 34433221 1 235666433 68999999999999875 5666665322 566643 3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 227 ISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
.++++|...++++.++|++++.+++...
T Consensus 198 ~~~~~Ea~~l~~~g~~~~~~iD~al~~~ 225 (507)
T PRK08268 198 RPYYTEALRVLEEGVADPATIDAILREA 225 (507)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 5699999999999999999999998654
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=158.48 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=142.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHHHhcCCCEEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS------------DQLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
++||+|||+|.||.+||.+|+.+ ||+|++||++++.+++..+ |... +...+.. ..+++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~--~~~~~~~-----~~~i~~ 75 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLT--AEECERT-----LKRLIP 75 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHH-----HhccEE
Confidence 46899999999999999999998 9999999999998876422 1110 0011111 246889
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC-
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR- 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~- 146 (480)
++++++ +.+||+||.|||+. .+++ +.++.++.+.+++++++. ++||+++. +++..+.....
T Consensus 76 ~~~~~~-l~~aDlVIEav~E~-----------~~vK--~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~ 138 (503)
T TIGR02279 76 VTDLHA-LADAGLVIEAIVEN-----------LEVK--KALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERV 138 (503)
T ss_pred eCCHHH-hCCCCEEEEcCcCc-----------HHHH--HHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccce
Confidence 999976 78999999999863 2333 556777888888888764 55666654 23333332211
Q ss_pred -CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHH
Q 011650 147 -GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQ 225 (480)
Q Consensus 147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| ++|....+ + ..|++|..| ++++++.+.++++.+++ .++++.+... ++.|.+
T Consensus 139 ~G~HF---f~Papv~~------L----vEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nrl--- 194 (503)
T TIGR02279 139 AGLHF---FNPAPVMA------L----VEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPG-----FIVNRV--- 194 (503)
T ss_pred EEEec---cCccccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCC-----cHHHHH---
Confidence 3333 34433221 1 235677544 68999999999999874 5666665332 356633
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 226 RISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
..++++|...+.++.+++++++.+++...
T Consensus 195 ~~~~~~EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 195 ARPYYAEALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 35799999999999999999999999754
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=145.32 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=141.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ ||+|+++++ +++++.+++.+..+.+.+.+.. -....+++.+++...+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999998 999999999 8888888875443332211100 012345666665689999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc-cc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF-LA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (480)
||+|+|++. ++++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~~---------------~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAYQ---------------LDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEecccC---------------HHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 999998642 467788888888888776643 334555555655553321 01123333333 34
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH------------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF------------------ 222 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~------------------ 222 (480)
+|..... .+.++.+|..+.. ..+..+.+.++|...+. ......|+..+.|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 5554333 4456778864322 23456667777776532 234567999999999999853
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCCH
Q 011650 223 ---LAQRISSVNAMSALCEATGADV 244 (480)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~gid~ 244 (480)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2455678999999999999864
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=140.89 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=130.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|.++ |+ +|++||+++++.+.+.+.. ....+++++++ .+|
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~g------------------~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALELG------------------LVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHCC------------------CCcccCCHHHH-hcC
Confidence 6999999999999999999988 65 7999999999888765421 11123456664 459
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc-
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|||.. .+.++++++.+ ++++++|++.+++... +.+.+.+... .. ++..+|..
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~----i~~~~~~~~~-~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAK----IIESVPKHIR-KN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHH----HHHHHHHhcC-CC-EEecCCcCc
Confidence 9999999853 24667788888 8889999876655433 3333332211 12 35556743
Q ss_pred ---cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 ---LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
.+|..+..+++....+++... ...+++..+.+.++++.++. .++..+..+..+.++++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~~~-~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLCDV-EKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 345444444443333333221 22257788999999999863 345555667789999999987755555544331
Q ss_pred HHHHcCCCHHHHHHHhc
Q 011650 236 LCEATGADVSQVSHAIG 252 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~ 252 (480)
.+.|..++.+..+
T Consensus 195 ----~~~~~~~~~~~~~ 207 (275)
T PRK08507 195 ----KEEDERNIFDLAG 207 (275)
T ss_pred ----hcCChHHHHhhcc
Confidence 2555555555444
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.2e-15 Score=144.43 Aligned_cols=187 Identities=14% Similarity=0.114 Sum_probs=128.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCE-EEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNL-FFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||.++|..|.++ |++|++||++++..+.+.+.. .+ ..+++.+ ++.+||
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g------------------~~~~~~~~~~-~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG------------------LVDEASTDLS-LLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC------------------CcccccCCHh-HhcCCC
Confidence 7999999999999999999998 999999999999888776421 11 2334443 578999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc--
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF-- 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-- 158 (480)
+||+|+|.. .+.++++++.++++++++|++.+++.+...+.+.+... . ++..+|-.
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999999842 24567788888899899998888776555444332211 1 34445533
Q ss_pred --cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 --LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 159 --~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.....+..+++....+++ .+....+++..+.+.++++.++. .++..+..+..+.++++.|....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l-~p~~~~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVL-TPTENTDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEE-ccCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333333344444333333 22223367889999999999863 34445666789999999998776666665544
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=144.39 Aligned_cols=214 Identities=15% Similarity=0.106 Sum_probs=140.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC---CCCCCC----ChHHHHHHhcCCCEEEecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ---LPIYEP----GLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~---~~~~e~----~l~~~~~~~~~~~l~~t~d~~ 73 (480)
|+||+|||+|.||.++|..|+.+ |++|++||++++.++++++.. .+...+ ..++... ....++++++|++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE-AALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH-HHHcCeEEeCCHH
Confidence 47999999999999999999998 999999999999887765421 000000 0000000 0125788999999
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcCCCceEE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSRGINFQI 152 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+++++||+||+|+|+.. ....+.++++.+.++++++| .++||.++.. +.+.+... .. ++
T Consensus 80 ~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~---~r-~v 139 (287)
T PRK08293 80 EAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRP---EK-FL 139 (287)
T ss_pred HHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCc---cc-EE
Confidence 88999999999998642 23467788899999988888 4556665532 22222211 11 22
Q ss_pred eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 153 LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..+| ..|.. ..+--.++.+.. +++++.+.+.++++.++. .++.+. .+...++.| .+..+++||
T Consensus 140 g~Hf--~~p~~-----~~~lvevv~~~~--t~~~~~~~~~~~~~~~Gk-~pv~v~----~d~pgfi~n---Ri~~~~~~e 202 (287)
T PRK08293 140 ALHF--ANEIW-----KNNTAEIMGHPG--TDPEVFDTVVAFAKAIGM-VPIVLK----KEQPGYILN---SLLVPFLSA 202 (287)
T ss_pred EEcC--CCCCC-----cCCeEEEeCCCC--CCHHHHHHHHHHHHHcCC-eEEEec----CCCCCHhHH---HHHHHHHHH
Confidence 2232 11111 011112333332 368999999999999864 455443 123345566 456788999
Q ss_pred HHHHHHHcCCCHHHHHHHhcCC
Q 011650 233 MSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+..+.++..++++++..++...
T Consensus 203 a~~l~~~g~a~~~~iD~a~~~~ 224 (287)
T PRK08293 203 ALALWAKGVADPETIDKTWMIA 224 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999889999999988654
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=142.36 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=135.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+|.||.++|..|+.+ |++|++||++++.++.+.+.. ..+.+...+.. ..+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAA-----LARISTATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhCeEeeCC
Confidence 5899999999999999999998 999999999999887743210 00111011111 145788889
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
+++ +++||+||+|||+.. ......++++.+.++++++|+ ++||+++. .+++.+..... |.
T Consensus 78 ~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~ 140 (292)
T PRK07530 78 LED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGI 140 (292)
T ss_pred HHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEe
Confidence 865 899999999998642 123566788999999998876 56666643 34443322111 11
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| +.|....++. .++.| ..+ +++.++.+.++++.+++ .+++..+.. .++.++ +..+
T Consensus 141 h~---~~p~~~~~~v---------ei~~g-~~t--~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nR----l~~~ 196 (292)
T PRK07530 141 HF---MNPVPVMKLV---------ELIRG-IAT--DEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNR----ILLP 196 (292)
T ss_pred ec---cCCcccCceE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHH----HHHH
Confidence 11 2333333221 24333 222 58899999999999874 456555433 344444 4577
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 229 SVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++||...+.++.-.+++++..++...
T Consensus 197 ~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 197 MINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 88999999988667899999988544
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=142.42 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=135.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC---CC-CCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQL---PI-YEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~---~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|+||+|||+|.||.++|..|+++ |++|++||++++.++.+++... .. .+.+... ...+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIAS----AGMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHH----HHhhceEEeCCHHHHh
Confidence 47899999999999999999998 9999999999999888765210 00 0000000 0114577888988888
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
++||+||+|||... .....++..+.+.++++++|+ ++|.... ...+++.+.... . ++..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998542 123556777877777776654 3444333 334544443211 1 122222
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT-NLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
. .|.... .+ ..++.+..+ +++..+.+.++++.++. .++... +.... +++|. ..++++|...
T Consensus 139 ~--~p~~~~-~l----~~i~~g~~t--~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~----i~nr~----~~~~~~Ea~~ 200 (311)
T PRK06130 139 F--TPADVI-PL----VEVVRGDKT--SPQTVATTMALLRSIGK-RPVLVKKDIPGF----IANRI----QHALAREAIS 200 (311)
T ss_pred C--CCCccC-ce----EEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEEcCCCCCc----HHHHH----HHHHHHHHHH
Confidence 1 111110 01 123444322 58899999999999863 345443 32211 55554 4578999999
Q ss_pred HHHHcCCCHHHHHHHhcCC
Q 011650 236 LCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~~~ 254 (480)
++++.|+|++++.+++...
T Consensus 201 l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 201 LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHcCCCCHHHHHHHHHhc
Confidence 9999999999999999754
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=141.80 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=136.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH---------hcCCCEEEecC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ---------CRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~---------~~~~~l~~t~d 71 (480)
|+||+|||+|+||.++|..|+.+ |++|+++|+++++++...+.. +..++.+.+. ....++++++|
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATI----TKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 46899999999999999999998 999999999999886322100 0001111100 01136888899
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCc
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GIN 149 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~ 149 (480)
+++ +++||+||+|+|.. .++ -.+.++.+.++++++++|+ ++|.....+ .+++.+..... +.+
T Consensus 77 ~~~-~~~aDlVi~av~e~-----------~~~--k~~~~~~l~~~~~~~~il~-s~ts~~~~~-~la~~~~~~~r~ig~h 140 (282)
T PRK05808 77 LDD-LKDADLVIEAATEN-----------MDL--KKKIFAQLDEIAKPEAILA-TNTSSLSIT-ELAAATKRPDKVIGMH 140 (282)
T ss_pred HHH-hccCCeeeeccccc-----------HHH--HHHHHHHHHhhCCCCcEEE-ECCCCCCHH-HHHHhhCCCcceEEee
Confidence 865 89999999999742 222 2578888999999998873 333333332 45444432211 111
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011650 150 FQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229 (480)
Q Consensus 150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
| +.|....++. .++-| ..+ +++..+.+.++++.++. .++.+.+ ...++.| .+..++
T Consensus 141 ~---~~P~~~~~~v---------ev~~g-~~t--~~e~~~~~~~l~~~lGk-~pv~~~d-----~~g~i~~---Ri~~~~ 196 (282)
T PRK05808 141 F---FNPVPVMKLV---------EIIRG-LAT--SDATHEAVEALAKKIGK-TPVEVKN-----APGFVVN---RILIPM 196 (282)
T ss_pred c---cCCcccCccE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eeEEecC-----ccChHHH---HHHHHH
Confidence 1 2343333321 23323 323 68999999999999874 4555543 3345666 577899
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 230 VNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+||...+.++.-.+++++..++..+
T Consensus 197 ~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 197 INEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 9999999998878999999998644
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=135.85 Aligned_cols=150 Identities=25% Similarity=0.329 Sum_probs=108.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||.|.||+++|..|+++ ||+|++|.++++.++.+++.+ .+.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 799999999999999999999 999999999999999999743 333333321 12468899999999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-CcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|+++||+. .+++.++++.++++++++++..+.. ..++...+.+.+++..+...+.++++|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999863 2578899999999999988876643 4566566667776654323388889998876
Q ss_pred cCccccccCCCCeEEEEcc
Q 011650 161 EGTAINDLFKPDRVLIGGR 179 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~ 179 (480)
+-. ...|..+++++.
T Consensus 138 Ei~----~~~pt~~~~as~ 152 (157)
T PF01210_consen 138 EIA----EGKPTAVVIASK 152 (157)
T ss_dssp HHH----TT--EEEEEEES
T ss_pred HHH----cCCCeEEEEEec
Confidence 532 134566778876
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-14 Score=140.82 Aligned_cols=210 Identities=15% Similarity=0.123 Sum_probs=136.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH---------hcCCCEEEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ---------CRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~---------~~~~~l~~t~d~ 72 (480)
.||+|||+|.||.++|..|+.+ |++|++||++++.++...+.... ...+++.++.+ ....++.+++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~-~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIES-GPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHh-hhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 5899999999999999999998 99999999999988754321000 00011111100 011356788887
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCce
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINF 150 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
+ ++++||+||+|+|++. ....++++++.+.++++++++. +|.. -+..+++..+..... |.+|
T Consensus 81 ~-~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~S-~tsg-~~~~~la~~~~~~~r~ig~hf 144 (291)
T PRK06035 81 E-SLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIAS-NTSG-IMIAEIATALERKDRFIGMHW 144 (291)
T ss_pred H-HhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEE-cCCC-CCHHHHHhhcCCcccEEEEec
Confidence 4 5899999999998642 1236677888888888887752 2322 233445444432211 1111
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+.|....++. .++ .+..+ ++++.+.+.++++.+++ .++.+.+....-..|+..| ++
T Consensus 145 ---~~P~~~~~~v---------Ev~-~g~~T--~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~~~--------~~ 200 (291)
T PRK06035 145 ---FNPAPVMKLI---------EVV-RAALT--SEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFIEG--------WL 200 (291)
T ss_pred ---CCCcccCccE---------EEe-CCCCC--CHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHHHH--------HH
Confidence 3443333221 233 33333 68999999999999874 5666777666666666554 67
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 231 NAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
||+..+.++.-++++++..++...
T Consensus 201 ~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 201 LEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhhc
Confidence 899999988668999999988543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=141.05 Aligned_cols=204 Identities=16% Similarity=0.200 Sum_probs=138.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHHHhcCCCEEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS------------DQLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|.||+|||+|.||.++|..|+.+ ||+|++||++++.++...+ |.. .+...+. ...++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~--~~~~~~~-----~~~~l~~ 75 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKL--TERERDA-----ALARLRF 75 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccC--ChhhHHH-----HHhCeEe
Confidence 35899999999999999999998 9999999999998876221 111 1111111 1257889
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhC-CCCcEEEEecCC-CcccHHHHHHHHHhhcC
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS-KSDKIVVEKSTV-PVKTAEAIEKILMHNSR 146 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv-~~gt~~~l~~~l~~~~~ 146 (480)
++|++ ++++||+||.|+|.. .+++ ...+..+.+.+ +++++++..||. ++.. ++..+.....
T Consensus 76 ~~~~~-~~~~~d~ViEav~E~-----------~~~K--~~l~~~l~~~~~~~~~il~snTS~~~~~~---la~~~~~~~r 138 (286)
T PRK07819 76 TTDLG-DFADRQLVIEAVVED-----------EAVK--TEIFAELDKVVTDPDAVLASNTSSIPIMK---LAAATKRPGR 138 (286)
T ss_pred eCCHH-HhCCCCEEEEecccC-----------HHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcc
Confidence 99995 489999999999863 3344 56677888887 788888765544 4332 2222221111
Q ss_pred --CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHh-ccCCCCeEEeCCchhHHHHHHHHHHHH
Q 011650 147 --GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYA-HWVPEDRILCTNLWSAEVSKLAANAFL 223 (480)
Q Consensus 147 --g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~ae~~Kl~~N~~~ 223 (480)
|.+| ++|....+.. .|+.|.. + ++++++++.+++. .+++ .++.+.+ ...++.|
T Consensus 139 ~~g~hf---~~P~~~~~lv---------Elv~~~~-T--~~~~~~~~~~~~~~~lgk-~pv~v~d-----~pGfi~n--- 194 (286)
T PRK07819 139 VLGLHF---FNPVPVLPLV---------ELVPTLV-T--SEATVARAEEFASDVLGK-QVVRAQD-----RSGFVVN--- 194 (286)
T ss_pred EEEEec---CCCcccCceE---------EEeCCCC-C--CHHHHHHHHHHHHHhCCC-CceEecC-----CCChHHH---
Confidence 2222 3444333321 3555543 3 6899999999988 4664 4555543 3345666
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 224 AQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 224 ~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
.+..+++||...+.++...+++++..++...
T Consensus 195 Ri~~~~~~Ea~~ll~eGv~~~~dID~~~~~g 225 (286)
T PRK07819 195 ALLVPYLLSAIRMVESGFATAEDIDKAMVLG 225 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 5678999999999998778999999998644
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-12 Score=140.48 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=102.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+ -++..++++++.+ .+||
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7999999999999999999998 8999999998554 22221 1234566777744 5699
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHH-hhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-DVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||. ..+.++++++. ++++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999983 23567777775 67888999998776654333334333322 222 566777664
Q ss_pred ccCccccccCCCCeEEEE---ccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011650 160 AEGTAINDLFKPDRVLIG---GRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS 211 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG---~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
.+- ...++.....++.+ +. .....+.++.+.++++.++ ..+..++++.
T Consensus 172 ~e~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~lG--a~v~~ms~ee 222 (667)
T PLN02712 172 PQS-AKHGWDGLRFVYEKVRIGN-EELRVSRCKSFLEVFEREG--CKMVEMSCTE 222 (667)
T ss_pred Ccc-ccchhccCcEEEeeccCCC-ccccHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 331 11111111222221 22 1112345677789999875 4666666543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=137.73 Aligned_cols=207 Identities=15% Similarity=0.229 Sum_probs=134.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH---------HhcCCCEEEecC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK---------QCRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~---------~~~~~~l~~t~d 71 (480)
|+||+|||+|.||.++|..|+.+ |++|++||+++++++...+.. +..++.+.+ ....++++++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSI----SSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 35799999999999999999998 999999999998876432210 000001100 001145677888
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
.+ ++++||+||+|||+.. ++ ...+++++.+.++++++|+ ++||+++.. +++.+..... +.
T Consensus 78 ~~-~~~~aD~Vieav~e~~-----------~~--k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~ 140 (295)
T PLN02545 78 LE-ELRDADFIIEAIVESE-----------DL--KKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGM 140 (295)
T ss_pred HH-HhCCCCEEEEcCccCH-----------HH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEE
Confidence 75 5899999999998632 22 3566778888899988875 677776554 3333322111 11
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| ++|....+. ..++++..+ +++..+++.++++.++. .++++.+.. .++.| .+..+
T Consensus 141 h~---~~pp~~~~l----------veiv~g~~t--~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~n---ri~~~ 196 (295)
T PLN02545 141 HF---MNPPPIMKL----------VEIIRGADT--SDEVFDATKALAERFGK-TVVCSQDYP-----GFIVN---RILMP 196 (295)
T ss_pred ec---cCCcccCce----------EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHH---HHHHH
Confidence 11 233222111 123444322 68899999999999874 445544432 24455 45677
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 229 SVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++||...+.++...+++++..++...
T Consensus 197 ~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 197 MINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 89999999999889999999887644
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=137.87 Aligned_cols=206 Identities=20% Similarity=0.257 Sum_probs=145.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|+||+|||.|.||..+|..++.. |++|+++|++++.+++..+.. ..+.+...+. ..++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~-----~l~~i~~~~ 75 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADA-----ALARITPTT 75 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHH-----HHhhccccC
Confidence 57999999999999999999996 899999999987766544210 0111111111 225678888
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++. ++++||+||.+|+. +.+++ +.+++++.+++++++++ .+.||+++... +..+..... |
T Consensus 76 ~~~-~l~~~DlVIEAv~E-----------~levK--~~vf~~l~~~~~~~aIlASNTSsl~it~i---a~~~~rper~iG 138 (307)
T COG1250 76 DLA-ALKDADLVIEAVVE-----------DLELK--KQVFAELEALAKPDAILASNTSSLSITEL---AEALKRPERFIG 138 (307)
T ss_pred chh-HhccCCEEEEeccc-----------cHHHH--HHHHHHHHhhcCCCcEEeeccCCCCHHHH---HHHhCCchhEEE
Confidence 887 59999999999986 34555 78999999999999988 56677776542 222211111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- ..|| .+.-| ++++++++.++...+++ .++...| ...++.| .+..
T Consensus 139 ~HF---fNP~~~m~L---------VEvI-~g~~T--~~e~~~~~~~~~~~igK-~~vv~~D-----~pGFi~N---Ril~ 194 (307)
T COG1250 139 LHF---FNPVPLMPL---------VEVI-RGEKT--SDETVERVVEFAKKIGK-TPVVVKD-----VPGFIVN---RLLA 194 (307)
T ss_pred Eec---cCCCCccee---------EEEe-cCCCC--CHHHHHHHHHHHHHcCC-CCEeecC-----CCceehH---hHHH
Confidence 333 466544431 1344 44433 68999999999999874 4444443 3346777 5678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++++|+..+.++..+++++|..++...
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999999999999999865
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-12 Score=137.50 Aligned_cols=202 Identities=18% Similarity=0.216 Sum_probs=139.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||..+|..|.++ |++|+++|+++++.+.+... .++.++++.++++.+||
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998876554431 12355677777889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.++++++.+.++++++|++.+++.....+.+.+.+.. +.. ++..+|.+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999999842 346778889999999999999888766666666554432 222 355567653
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|... .+....+++. +....+++..+.+.++|+.++ ..+..++++ +.-+++.++....++.+...+.. +.++
T Consensus 121 p~~~---~~~g~~~il~-p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~~~ 191 (437)
T PRK08655 121 PRTP---SLKGQVVILT-PTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LKRL 191 (437)
T ss_pred CCCc---ccCCCEEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 2221 1222233332 222225778899999999875 456666554 66777777777777666665544 4667
Q ss_pred CCCHHHHHHHhc
Q 011650 241 GADVSQVSHAIG 252 (480)
Q Consensus 241 gid~~~v~~~~~ 252 (480)
|.|..+....++
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888777654443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=148.29 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=143.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC----------CCCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD----------QLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|.||+|||+|.||..+|..++.+ |++|+++|++++.++...+. ...+.+...+.. .+++++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGV-----LSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence 46899999999999999999998 99999999999887642211 001111111111 25799999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.|||. +.+++ +++++++.+++++++++ .++||+++.. ++..+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E-----------~l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVE-----------NPKVK--AAVLAEVEQKVREDTILASNTSTISISL---LAKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccC-----------cHHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCCccEEE
Confidence 9965 8999999999986 34555 78999999999999988 4556666553 3332222111 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++.+.+..+++.+++ .++.+. +...++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------VEvv~g-~~T--~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfv~n---Ri~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMPL---------VEVIRG-EKT--SDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (715)
T ss_pred Eec---CCcccccce---------EEeeCC-CCC--CHHHHHHHHHHHHHhCC-ceEEec-----CcCchhHH---HHHH
Confidence 333 455443321 135544 333 68999999999998874 566654 45567888 4577
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+++||+..+.++. +++++|..++...
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~~ 530 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEKQ 530 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHhh
Confidence 8999999998865 9999999998643
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=126.24 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=145.1
Q ss_pred ceEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHH-----HHcCCCCCCCCChHH
Q 011650 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVPRINA-----WNSDQLPIYEPGLEE 56 (480)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~-----l~~g~~~~~e~~l~~ 56 (480)
|||+|.|.|+ -|.+||.+|+++ ||+|++||+++++.+. +.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 7999999994 589999999998 9999999999876532 332
Q ss_pred HHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 57 VVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+...++++.+++++||+||+|+|++ ..+++++.++.+++++|++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 13456778888899999999999864 234666788999999999999999999988765
Q ss_pred -HHHHHHhhcCCCceEE-eeCCcccccCccccccCCCCeEEEEccC----CcchHHHHHHHHHHHhccCCCCeEEeC-Cc
Q 011650 137 -IEKILMHNSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRE----TPEGMKAIKALKDVYAHWVPEDRILCT-NL 209 (480)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~----~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~ 209 (480)
+...|+-.. .|+.+ .|+|-- .||..-++ ..++++.. ...+++..+++.++-+.... ..+... +.
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~~-vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~-~~~~~pa~l 196 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPAA-VPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTGK-KAYVVPADV 196 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCCC-CCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhCC-Ceeecchhh
Confidence 344444221 23333 357743 34432211 23334321 12357888888888887653 333321 10
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH----HHHhcCCCCCCCccccCCCCccccchhhhHHHHHH
Q 011650 210 --WSAEVSKLAANAFLAQRISSVNAMSALCEA-TGADVSQV----SHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVY 282 (480)
Q Consensus 210 --~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~-~gid~~~v----~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~ 282 (480)
..+.|.-++ -++.++.+-+....+.+ +|+..+-+ ...+.+= ..+.-.-|+.|--=.-||..|+.
T Consensus 197 ~~~v~Dm~s~v----ta~~~~gil~y~~~~t~i~~ap~~~~~~~~~~~l~~~-----a~l~~~~Gi~~~~~~l~p~~l~~ 267 (341)
T TIGR01724 197 TSAVADMGSLV----TAVALAGVLDYYYVGTQIINAPKEMIEKQILMTLQTM-----ASLVETSGVEGMAKAINPELLVK 267 (341)
T ss_pred cchhhhHHHHH----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHhcCHHHHHh
Confidence 112222211 12222222222322321 23322111 1111100 00111112333222347888988
Q ss_pred HHHHCCCchhhhHHHHHHHHhh
Q 011650 283 ICECNGLPEVANYWKQVIKVND 304 (480)
Q Consensus 283 ~a~~~g~~~~~~~~~~~~~~N~ 304 (480)
.|++..+.+..+.+..++++=+
T Consensus 268 sa~sM~~~~~~~~l~~~l~~l~ 289 (341)
T TIGR01724 268 SARSMHLLDRQEDLDAALKIIS 289 (341)
T ss_pred hhhhcccchHHHhHHHHHHHHH
Confidence 8888877766677777665543
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-12 Score=131.13 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=144.2
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+++|+||| +|.||.++|..|.++ ||+|++||++.. +++++++.+|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 47899998 999999999999998 999999998520 1334567899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|.. ...+.++++.+ ++++++|++.|++.....+.+.+.+. + . ++..+|-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~-~-fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G-P-VLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C-C-EEeeCCCCC
Confidence 9999999853 23566778888 88999999988876555554443221 1 2 566777655
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN-LWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
.+-. .+ ....+++... + ++++.+.+.++++.++ ..+..++ .+..+.++++.-. .++....++..+++
T Consensus 202 ~~~~---~~-~~~~vv~~~~-~--~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVG---SL-AKQVVVVCDG-R--QPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCc---cc-CCCEEEEcCC-C--CchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4322 12 2223333322 1 4678889999999986 3454544 4668889998843 45555555666665
Q ss_pred HcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHH-HHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDIL-NLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~-~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
.+.|..++.+.. ++|| +|.. ...+.|. -+ ..+|......|.+.. ...+.+.+.
T Consensus 270 -~~~~~~~~~~~~-------------~~~f------r~~la~~tRia~---~~--p~lw~dI~~~N~~~~-~~l~~~~~~ 323 (374)
T PRK11199 270 -ENVDLEQLLALS-------------SPIY------RLELAMVGRLFA---QD--PQLYADIIMSSPENL-ALIKRYYQR 323 (374)
T ss_pred -cCCCHHHHHHhc-------------ChHH------HHHHHHHHHHHc---CC--HHHHHHHHHhChhHH-HHHHHHHHH
Confidence 777877765421 1211 3322 2333332 23 568888888887655 555555544
Q ss_pred h
Q 011650 318 M 318 (480)
Q Consensus 318 ~ 318 (480)
+
T Consensus 324 l 324 (374)
T PRK11199 324 F 324 (374)
T ss_pred H
Confidence 4
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=129.89 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=137.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|+++ |++|+++++++++++.+++....+ +.+ +. ...+..++++++ +..+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~--~~-----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG--EI-----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC--ce-----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888654333 100 00 011234566665 489999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC-cccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP-EFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (480)
||+|+|+.. +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+.. .-..+.+.+ .+..
T Consensus 70 vila~k~~~---------------~~~~~~~l~~~l~~~~~iv~~-~nG~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAYQ---------------LPAALPSLAPLLGPDTPVLFL-QNGVGHLEELAAYIGPER--VLGGVVTHAAELEG 131 (304)
T ss_pred EEEeccccc---------------HHHHHHHHhhhcCCCCEEEEe-cCCCCcHHHHHHhcCccc--EEEEEEEEeeEecC
Confidence 999998531 467888899888887766643 334565565655543211 001122222 2334
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH-------------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
|+...+. ...++.+|..+. ..+..+.+.++|+..+. ......|+....|.|++.|+
T Consensus 132 p~~v~~~--~~g~~~ig~~~~--~~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHT--GGGRLKIGEPDG--ESAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEc--CCCCEEEeCCCC--CcHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 5544322 224567786533 12346677788887542 23345789999999999883
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCH
Q 011650 222 --FLAQRISSVNAMSALCEATGADV 244 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~gid~ 244 (480)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 22344567899999999998753
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-13 Score=145.53 Aligned_cols=205 Identities=16% Similarity=0.203 Sum_probs=143.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++.+ |++|+++|++++.+++..+.. ..+.+...+. ...+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAG-----VLNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEEeC
Confidence 46899999999999999999998 999999999998876533210 0011111111 125789999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.||+. +.+++ +++++++.+.+++++|+ .++|++++.. ++..+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E-----------~l~~K--~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVE-----------NPKVK--AAVLAEVEQHVREDAILASNTSTISISL---LAKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCcc-----------cHHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEE
Confidence 9864 8999999999986 34455 78999999999999988 4555666543 3332222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++.+.+.+++..+++ .++.+. +...++.| .+..
T Consensus 449 ~Hf---f~P~~~~~l---------vEvv~g-~~T--s~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfi~N---Rl~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMPL---------VEVIRG-EKS--SDETIATVVAYASKMGK-TPIVVN-----DCPGFFVN---RVLF 504 (714)
T ss_pred Eec---CCCcccCce---------EeecCC-CCC--CHHHHHHHHHHHHHcCC-EEEEeC-----CcccchHH---HHHH
Confidence 333 455544331 135444 333 68999999999999874 566654 34567888 4577
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++++|+..+.++ |+++++|..++...
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~~ 530 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEKQ 530 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHhc
Confidence 899999999875 59999999998644
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=145.30 Aligned_cols=202 Identities=14% Similarity=0.157 Sum_probs=141.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|.+|+|||+|.||..+|..++.+ |++|+++|++++.+++..+.. ..+.+...+. ...++++++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 407 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDS-----ILSNLTPTL 407 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEEeC
Confidence 46899999999999999999998 999999999998877633210 0000111111 125799999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|+++ +++||+||.||+. +.+++ .++++++.+++++++++ .++||+++.. ++..+..... |
T Consensus 408 ~~~~-~~~aDlViEAv~E-----------~l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig 470 (737)
T TIGR02441 408 DYSG-FKNADMVIEAVFE-----------DLSLK--HKVIKEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIG 470 (737)
T ss_pred CHHH-hccCCeehhhccc-----------cHHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEE
Confidence 9964 8999999999986 34555 78999999999999988 4556666554 3332322111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++++.+..+++.+++ .++.+.+ ...++.| .+..
T Consensus 471 ~Hf---f~P~~~m~L---------vEvv~g-~~T--s~~~~~~~~~~~~~lgk-~pv~v~d-----~pGFi~N---Ri~~ 526 (737)
T TIGR02441 471 MHY---FSPVDKMQL---------LEIITH-DGT--SKDTLASAVAVGLKQGK-VVIVVKD-----GPGFYTT---RCLG 526 (737)
T ss_pred Eec---cCCcccCce---------EEEeCC-CCC--CHHHHHHHHHHHHHCCC-eEEEECC-----cCCchHH---HHHH
Confidence 333 455544321 135444 333 68999999999999874 5666544 3457777 4567
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHh
Q 011650 228 SSVNAMSALCEATGADVSQVSHAI 251 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~ 251 (480)
++++|+..+.++ |+++++|..++
T Consensus 527 ~~~~ea~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 527 PMLAEVIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHH
Confidence 999999999876 67999999986
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=143.55 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=140.0
Q ss_pred CceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH---------HhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK---------QCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~---------~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++ .+ |++|+++|++++.+++..... +..++..++ .....++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 377 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYA----WKLLDKGVKRRHMTPAERDNQMALITGTT 377 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence 468999999999999999998 47 999999999998766543210 000111110 01125789999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||. ..+++ .++++++.+++++++|+ .++|++++.. ++..+..... |
T Consensus 378 ~~~-~~~~adlViEav~E-----------~l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~~g 440 (699)
T TIGR02440 378 DYR-GFKDVDIVIEAVFE-----------DLALK--HQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAASRPENVIG 440 (699)
T ss_pred ChH-HhccCCEEEEeccc-----------cHHHH--HHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhcCCcccEEE
Confidence 986 58999999999986 24445 78999999999999988 4445666554 3333322111 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| ++|....+- -.||- +..| ++++.+.+.++++.+++ .++.+.| ...++.| .+..
T Consensus 441 ~Hf---fnP~~~~~l---------VEvv~-g~~T--~~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 496 (699)
T TIGR02440 441 LHY---FSPVEKMPL---------VEVIP-HAGT--SEQTIATTVALAKKQGK-TPIVVAD-----KAGFYVN---RILA 496 (699)
T ss_pred Eec---CCccccCce---------EEEeC-CCCC--CHHHHHHHHHHHHHcCC-eEEEEcc-----ccchHHH---HHHH
Confidence 222 355443321 13543 4433 68999999999999874 5666543 4567777 5678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+++||...+.++ |++++++..++.
T Consensus 497 ~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 497 PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 899999999885 579999999984
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-12 Score=122.67 Aligned_cols=195 Identities=11% Similarity=0.137 Sum_probs=120.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC----eEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+||..|.++ |+ +|++| |+++++.+.+.+. ++..+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 7999999999999999999998 77 89999 9999988776541 245667777878
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEeeC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
++||+||+||| |. .+.++++++.+.++++++||.. ++++ .+.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~---~~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGIT---LADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCc---HHHHHHHcCC----CC-EEEEC
Confidence 89999999996 32 3577778888888888877632 3333 2233322211 11 12134
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHH--HHHHHHHHHHHHHHH
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA--ANAFLAQRISSVNAM 233 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~--~N~~~~~~ia~~nE~ 233 (480)
|..... .. ... .++..+.. .+++..+.++++|+.++ ..++...-..-..+-+. ...|.+..+.. +
T Consensus 117 P~~~~~---~~--~~~-~~l~~~~~--~~~~~~~~v~~l~~~~G--~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a---~ 183 (266)
T PLN02688 117 PNTPCL---VG--EAA-SVMSLGPA--ATADDRDLVATLFGAVG--KIWVVDEKLLDAVTGLSGSGPAYIFLAIEA---L 183 (266)
T ss_pred CCcHHH---Hh--Cce-EEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHcchhHhhhcCHHHHHHHHHHH---H
Confidence 432110 10 011 22232221 14788999999999986 34433210000111111 12233334444 4
Q ss_pred HHHHHHcCCCHHHHHHHhcC
Q 011650 234 SALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~~ 253 (480)
...+.+.|+|.++..+.+..
T Consensus 184 ~ea~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 184 ADGGVAAGLPRDVALSLAAQ 203 (266)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 44488999999999988764
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=127.01 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=101.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC----C-CCCCh-HHHHHHhcCCCEEEecCHHHHh
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLP----I-YEPGL-EEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~----~-~e~~l-~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... . ....+ ++... ...+++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEAD-AALARISFTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH-HHHHTEEEESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhh-hhhhhcccccCHHHHh
Confidence 799999999999999999998 99999999999887654431000 0 00000 00011 1125789999999855
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CCceEEe
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GINFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
+||+||.|+|.. .+++ ++.++.+.+.+++++++. ++|++++.. ++..+....+ |.+|
T Consensus 78 -~adlViEai~E~-----------l~~K--~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~R~ig~Hf--- 137 (180)
T PF02737_consen 78 -DADLVIEAIPED-----------LELK--QELFAELDEICPPDTILASNTSSLSISE---LAAALSRPERFIGMHF--- 137 (180)
T ss_dssp -TESEEEE-S-SS-----------HHHH--HHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGGGEEEEEE---
T ss_pred -hhheehhhcccc-----------HHHH--HHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCceEEEEec---
Confidence 999999999852 3444 789999999999999884 445555443 2222221111 2222
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT 207 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 207 (480)
|+|....+- -.|+-| ..+ ++++.+.+..+++.+++ .++.+.
T Consensus 138 ~~P~~~~~l---------VEvv~~-~~T--~~~~~~~~~~~~~~~gk-~pv~v~ 178 (180)
T PF02737_consen 138 FNPPHLMPL---------VEVVPG-PKT--SPETVDRVRALLRSLGK-TPVVVK 178 (180)
T ss_dssp -SSTTT--E---------EEEEE--TTS---HHHHHHHHHHHHHTT--EEEEEE
T ss_pred ccccccCce---------EEEeCC-CCC--CHHHHHHHHHHHHHCCC-EEEEec
Confidence 456544331 135544 333 68999999999999864 455543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=143.15 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=140.9
Q ss_pred CceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH---------HhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK---------QCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~---------~~~~~~l~~t~ 70 (480)
+.||+|||+|.||..+|..++ .. |++|+++|++++.++...+.. +..++++++ .....++++++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 382 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYS----WDLLDKKVKRRHLKPSERDKQMALISGTT 382 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhcEEEeC
Confidence 468999999999999999999 76 999999999998766533210 000111110 01125799999
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g 147 (480)
|++ ++++||+||.|||. +.+++ +++++++.+++++++++. ++|+++++. ++..+..... |
T Consensus 383 ~~~-~~~~aDlViEav~E-----------~~~~K--~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~ig 445 (708)
T PRK11154 383 DYR-GFKHADVVIEAVFE-----------DLALK--QQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAAARPEQVIG 445 (708)
T ss_pred ChH-HhccCCEEeecccc-----------cHHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhcCcccceEE
Confidence 985 58999999999985 34445 789999999999999884 445666554 3222222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+| |+|....+- -.||-| ..| ++++.+.+..++..+++ .++.+.| ...++.| .+..
T Consensus 446 ~Hf---f~P~~~~~l---------VEvv~g-~~T--s~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~ 501 (708)
T PRK11154 446 LHY---FSPVEKMPL---------VEVIPH-AKT--SAETIATTVALAKKQGK-TPIVVRD-----GAGFYVN---RILA 501 (708)
T ss_pred Eec---CCccccCce---------EEEECC-CCC--CHHHHHHHHHHHHHcCC-ceEEEec-----cCcHHHH---HHHH
Confidence 333 455544331 135544 333 68999999999998874 4565543 4456777 5778
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+++||...+.++ |+++++|..++.
T Consensus 502 ~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 502 PYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999987 789999998875
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=123.38 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=110.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..|.+. | ++|++||+++++.+.+++... ....+++.++++.+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 6899999999999999999987 6 489999999998877664210 112345666778999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc-
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF- 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (480)
|+||+|+|.. .+.++++.+.+.++++++|++.+++.....+.+.+.+.+ +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999999853 235667788888888998887666654444444333221 122 34445543
Q ss_pred ---cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCc
Q 011650 159 ---LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNL 209 (480)
Q Consensus 159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~ 209 (480)
..++.+..+++....+++... ...+++..+.+.++++.++ ..+...+.
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~-~~~~~~~~~~~~~l~~~lG--~~~~~~~~ 179 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPP-EGTDPAAVARLTAFWRALG--ARVEEMDP 179 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCC-CCCCHHHHHHHHHHHHHcC--CEEEEcCH
Confidence 344444444544444545422 2224778899999999885 35555443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=125.14 Aligned_cols=207 Identities=13% Similarity=0.176 Sum_probs=151.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH---Hhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK---HVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
+.|||||+|.||..+|.+++++ |+.|.+|+|+.++.+++-++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 3599999999999999999999 99999999999999987753210 123444445444 3567
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
..-|+++|... +.+...++++.++|.++.|||+-. +..+.|.++..+. .+.+ ..| +..+-.
T Consensus 68 PRkI~lMVkAG--------------~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~G--i~F-vG~GVS 129 (473)
T COG0362 68 PRKILLMVKAG--------------TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEKG--ILF-VGMGVS 129 (473)
T ss_pred CceEEEEEecC--------------CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-HhcC--CeE-Eecccc
Confidence 78899999753 235678899999999999999875 3466777766543 3332 333 333333
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC---CC--eEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP---ED--RILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~---~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
-..+|. ++.|.+|.||. +++.+.+.++|+.+.- +. +.+++.-+++..+|+++|-.-.--+.++.|
T Consensus 130 GGEeGA-----~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEGA-----RHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred cccccc-----ccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 333443 45567889986 8999999999997641 11 234566688999999999988888889999
Q ss_pred HHHHHHH-cCCCHHHHHHHhc
Q 011650 233 MSALCEA-TGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~~-~gid~~~v~~~~~ 252 (480)
...+.+. +|++.+++.+...
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999888 7998777666553
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=122.00 Aligned_cols=256 Identities=16% Similarity=0.085 Sum_probs=151.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||+.+|..|+++ ||+|+++.+++. +.+++....+....-+.. .....+++++++ ...+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDSVHGDFH-----LPPVQAYRSAED-MPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEeCCCCee-----ecCceEEcchhh-cCCCC
Confidence 38999999999999999999998 999999999863 455543322211100000 011334555543 67899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+.+.++++|+. .+...+..+.+.+.+.+... ..-.+..+..+..
T Consensus 75 ~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~ 137 (313)
T PRK06249 75 WVLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVG 137 (313)
T ss_pred EEEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCC
Confidence 9999998642 25677788888887776653 34455666666665543211 0001112223445
Q ss_pred cCccccccCCCCeEEEEccCCcch-----HHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH--------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEG-----MKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA-------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~-----~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------- 221 (480)
||...+. ...++.+|..+.. + .+..+.+.++|+..+. ......|+....|.|++.|+
T Consensus 138 pg~v~~~--~~g~~~iG~~~~~-~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 138 PGVIHHL--AYGRVNLGYHSGP-AADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CeEEEEC--CCCcEEEecCCCC-cccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 5554332 2334667754321 2 3556677888887542 34556899999999999873
Q ss_pred -------HHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHhcCCCC-CCCccccCCCCccccchhhh--HHHHHHHHHH
Q 011650 222 -------FLAQRISSVNAMSALCEATGAD-----VSQVSHAIGFDSR-IGPKFLNASVGFGGSCFQKD--ILNLVYICEC 286 (480)
Q Consensus 222 -------~~~~~ia~~nE~~~l~~~~gid-----~~~v~~~~~~~~~-i~~~~~~pg~g~gG~c~~kD--~~~l~~~a~~ 286 (480)
.+.+..+.+.|+..++++.|++ .+++++.+...+. .++++.+-- .|.-...| ..++++.+++
T Consensus 214 ~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~tEid~i~G~vv~~a~~ 290 (313)
T PRK06249 214 PLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYHDFE---EGRPLELEAIYANPLAAARA 290 (313)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHHHHH---CCCcccHHHHhhHHHHHHHH
Confidence 2344556789999999999986 3344444433221 111111100 01111111 2367888999
Q ss_pred CCCc
Q 011650 287 NGLP 290 (480)
Q Consensus 287 ~g~~ 290 (480)
+|++
T Consensus 291 ~Gi~ 294 (313)
T PRK06249 291 AGCA 294 (313)
T ss_pred hCCC
Confidence 9987
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=120.29 Aligned_cols=197 Identities=14% Similarity=0.196 Sum_probs=123.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.|||+|||+|.||.+||..|.++ | ++|+++|+++ ++.+.+... .+++.++++.++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~ 62 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKEL 62 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHH
Confidence 38999999999999999999987 6 8999999975 466666531 124566777787
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEe-
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQIL- 153 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~- 153 (480)
+.+||+||+|||.. .+.++++++.+.++++++||.. +++.+.+.++ .+.. +..++
T Consensus 63 ~~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~-----~~~v~r 119 (279)
T PRK07679 63 LTDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQK-----DVPIIR 119 (279)
T ss_pred HhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-----CCeEEE
Confidence 88999999999842 2466778888888888888775 7776665443 2221 11222
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHH--HHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAA--NAFLAQRISSVN 231 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--N~~~~~~ia~~n 231 (480)
..|... .. . .....++.++.. .+++..+.++++|+.++. .+....-.--..+.+.. ..| ...++.
T Consensus 120 ~mPn~~--~~-~---~~~~t~~~~~~~--~~~~~~~~v~~l~~~~G~--~~~v~e~~~~~~~a~~Gsgpa~---~~~~~e 186 (279)
T PRK07679 120 AMPNTS--AA-I---LKSATAISPSKH--ATAEHIQTAKALFETIGL--VSVVEEEDMHAVTALSGSGPAY---IYYVVE 186 (279)
T ss_pred ECCCHH--HH-H---hcccEEEeeCCC--CCHHHHHHHHHHHHhCCc--EEEeCHHHhhhHHHhhcCHHHH---HHHHHH
Confidence 234211 11 1 011134556542 257788999999999863 44432100000011111 122 233334
Q ss_pred HHHHHHHHcCCCHHHHHHHhcC
Q 011650 232 AMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 232 E~~~l~~~~gid~~~v~~~~~~ 253 (480)
-+...+.+.|+|.++..+++..
T Consensus 187 al~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 187 AMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455689999999888887764
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-11 Score=115.69 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=123.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|.||..+|..|.++ | ++|+++|+++++.+.+.+.. ++..+++.++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999987 7 78999999999888776521 2345567777788
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEeeCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
.+|+||+|+|.. .+.++++.+.+++ +++|+.. +.++ .+.+++.+.. +.. .+-..|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999742 3577788888776 3555433 2222 2334444321 112 223455
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK-LAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (480)
.... . +......+.-+ ...+++..+.++.+|+.++ ..+...+...-...= +..+ .-+....++..+..
T Consensus 118 ~~p~---~---~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA---L---VGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGS-GPAYVFLFIEALAD 186 (267)
T ss_pred CchH---H---HcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcC-hHHHHHHHHHHHHH
Confidence 3211 0 11111222222 2235888999999999986 355554333222222 2222 12233567778888
Q ss_pred HHHHcCCCHHHHHHHhc
Q 011650 236 LCEATGADVSQVSHAIG 252 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~ 252 (480)
.+.+.|++.++..+.+.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 187 AGVKLGLPREQARKLAA 203 (267)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88889999988777665
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-11 Score=121.71 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=113.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+........+ .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999998 899999998877654433211100 01235677777899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC----
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP---- 156 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---- 156 (480)
||+|||.. .+.++++++.+ .++++.+|++.+++.....+.+...+.. +.. ++..+|
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~---~~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGD---LIR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC---CCe-EEeeCCcCcC
Confidence 99999842 35677888887 4788888888777776655555443221 112 344456
Q ss_pred cccccCccccccCCC-CeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKP-DRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLAA 219 (480)
Q Consensus 157 e~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~ 219 (480)
|+..+..+..+++.. ..++..+. ..+++..+.++++++.++ ..+..++.+ ....+.++.
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~~--~~~~~~~~~v~~l~~~lG--a~~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPDD--HTDPDAVAELKDLLSGTG--AKFVVLDAEEHDRAVALVS 185 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecCC--CCCHHHHHHHHHHHHHcC--CEEEECCHHHHhHHHhHhc
Confidence 333333333344433 34444322 225788999999999986 355444433 233444433
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-11 Score=121.06 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHH-------HHHHHcC----------CCCCCCCChHHHHHHhcCCCEEEecC--H
Q 011650 12 VGGPTMAVIALKCPSIEVAVVDISVPR-------INAWNSD----------QLPIYEPGLEEVVKQCRGKNLFFSTD--V 72 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~-------v~~l~~g----------~~~~~e~~l~~~~~~~~~~~l~~t~d--~ 72 (480)
||..+|..++.+ |++|+++|++++. ++...+. ...+.+...+. ..++++++++ +
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~~~~ 73 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA-----VLARIAVVARDGA 73 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEeecCcch
Confidence 799999999998 9999999999853 2221110 00000101111 1257888765 6
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCce
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINF 150 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
.+++++||+||.|||.. .+++ ...+.++.+.+++++++. ||.+.-....++..+..... |.+|
T Consensus 74 ~~a~~~aD~ViEav~E~-----------~~~K--~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf 138 (314)
T PRK08269 74 ADALADADLVFEAVPEV-----------LDAK--REALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHW 138 (314)
T ss_pred HHHhccCCEEEECCcCC-----------HHHH--HHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEec
Confidence 67789999999999863 3444 667888999999998883 44444444455444322111 2222
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
++|....+- -.| +++..+ ++++++++.++++.+++ .++++.+... +....+...++
T Consensus 139 ---~~Pp~~~~l---------vEV-v~g~~t--~~e~~~~~~~ll~~lGk-~~v~v~d~~G--------fi~nri~~~~l 194 (314)
T PRK08269 139 ---LNPAYLMPL---------VEV-SPSDAT--DPAVVDRLAALLERIGK-VPVVCGPSPG--------YIVPRIQALAM 194 (314)
T ss_pred ---CCccccCce---------EEE-eCCCCC--CHHHHHHHHHHHHHcCC-cEEEecCCCC--------cchHHHHHHHH
Confidence 233322211 123 465544 68999999999999874 5666666542 23457889999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCC
Q 011650 231 NAMSALCEATGADVSQVSHAIGFDS 255 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~~ 255 (480)
+|...++++.++|++++.+++....
T Consensus 195 ~EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 195 NEAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 9999999999999999999997653
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-10 Score=111.42 Aligned_cols=186 Identities=19% Similarity=0.198 Sum_probs=116.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH-HHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV--DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV-EKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~--D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~-~~a~~ 77 (480)
+|+|+|+|+|.||..+|..|.++ |+.|.++ |++.+..+.-.+.. + .-+.+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~lg-------v----------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALELG-------V----------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhcC-------c----------ccccccchhhhhcc
Confidence 47999999999999999999998 8877555 55544443332210 0 01122333 44577
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||- ..+.++++++.++++++++|++-+++.....+.+.+.+.+ .. -++..+|-
T Consensus 64 ~aD~VivavPi---------------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~---~~-~~vg~HPM 124 (279)
T COG0287 64 EADLVIVAVPI---------------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG---DV-RFVGGHPM 124 (279)
T ss_pred cCCEEEEeccH---------------HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccC---CC-eeEecCCC
Confidence 89999999984 2457888999999999999998665543433333332221 12 34667886
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-HHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS-AEVSKLAANAFLAQRISS 229 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N~~~~~~ia~ 229 (480)
+..+ +..+++.+..+|+ ++....+.+..+.+.++|+.++ ..++.++++. -..+-.+.-.-..+..++
T Consensus 125 ~G~~--~~~~lf~~~~~vl-tp~~~~~~~~~~~~~~~~~~~g--a~~v~~~~eeHD~~~a~vshLpH~~a~al 192 (279)
T COG0287 125 FGPE--ADAGLFENAVVVL-TPSEGTEKEWVEEVKRLWEALG--ARLVEMDAEEHDRVMAAVSHLPHAAALAL 192 (279)
T ss_pred CCCc--ccccccCCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--CEEEEcChHHHhHHHHHHHHHHHHHHHHH
Confidence 6554 3445666666665 4444345778999999999875 4666776654 333333333333333333
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-11 Score=116.40 Aligned_cols=199 Identities=19% Similarity=0.177 Sum_probs=120.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.+|+..|.++ |+ +|+++|+++++.+.+.+. .++..+++..+++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~--g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~ 62 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK--NIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVAN 62 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHh
Confidence 6899999999999999999987 53 799999999988876531 12345667777789
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+||| |. .+.++++++.++++++++|| |....=+.+.+++.+.... .+ +=..|.
T Consensus 63 ~aDiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~~---~v-vR~MPN 121 (272)
T PRK12491 63 SADILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRKL---KV-IRVMPN 121 (272)
T ss_pred hCCEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCCC---cE-EEECCC
Confidence 9999999998 42 35777888888888887776 3333333455655553211 11 112232
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
....-.... ..+..+ ...+++..+.+..+|+.++. .+... -..-...=-+.-+-=+....++..+...+
T Consensus 122 -----~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~~-E~~~d~~talsgsgPAf~~~~~eal~~a~ 190 (272)
T PRK12491 122 -----TPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVVN-EKLMDVVTSISGSSPAYVYMFIEAMADAA 190 (272)
T ss_pred -----hHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEEc-HHHhhhHHHhccCcHHHHHHHHHHHHHHH
Confidence 111111111 122222 22356678899999999863 44332 11101111111111133455666677778
Q ss_pred HHcCCCHHHHHHHhc
Q 011650 238 EATGADVSQVSHAIG 252 (480)
Q Consensus 238 ~~~gid~~~v~~~~~ 252 (480)
.+.|++.++..+.+.
T Consensus 191 v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 191 VLGGMPRKQAYKFAA 205 (272)
T ss_pred HHcCCCHHHHHHHHH
Confidence 888888877776654
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=113.41 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=119.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.+++..|.+. |+. +.++++++++.+.+.+.. ++.+.+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 6999999999999999999987 653 578999999887766421 124556788887889
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|+| |. .+.++++.+. +.++++|+. +..+-+.+.+.+.+.... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 2355566552 456787774 445555666776664321 1 22345542
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH-----HHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA-----FLAQRISSVNAM 233 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----~~~~~ia~~nE~ 233 (480)
.. . . .... ..+.++ . +.++++|+.++. .+...+. |...+. +.+....++.++
T Consensus 119 ~~--a-~--~~g~-t~~~~~------~---~~~~~l~~~lG~--~~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~ 175 (258)
T PRK06476 119 FV--A-E--RKGV-TAIYPP------D---PFVAALFDALGT--AVECDSE------EEYDLLAAASALMATYFGILETA 175 (258)
T ss_pred hh--h-h--CCCC-eEecCC------H---HHHHHHHHhcCC--cEEECCh------HhccceeehhccHHHHHHHHHHH
Confidence 11 1 0 0111 122221 2 478889998863 4444332 222222 334455688899
Q ss_pred HHHHHHcCCCHHHHHHHhc
Q 011650 234 SALCEATGADVSQVSHAIG 252 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~ 252 (480)
..++++.|+|.++..+.+.
T Consensus 176 ~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 176 TGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 9999999999988887765
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-09 Score=109.38 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=105.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
+|+|+|||+|.||..+|..|.+. |++|++||+++.. +.... -++...++.++++ .++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~-------------------~gv~~~~~~~e~~~~~a 93 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAE-------------------LGVSFFRDPDDFCEEHP 93 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHH-------------------cCCeeeCCHHHHhhCCC
Confidence 37999999999999999999987 8999999998642 22221 0133456777755 479
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHH-HhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||.. .+.++++++ .++++++++|++.+++.....+.+.+.+.. +.. ++..+|-+
T Consensus 94 DvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~~-~V~~HPma 154 (304)
T PLN02256 94 DVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EFD-ILCTHPMF 154 (304)
T ss_pred CEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CCe-EEecCCCC
Confidence 9999999842 246777777 567888999987766554444444443322 122 46677765
Q ss_pred cccCccccccCCCCeEEEEcc---CCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011650 159 LAEGTAINDLFKPDRVLIGGR---ETPEGMKAIKALKDVYAHWVPEDRILCTNLWS 211 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
..+... ..+....+++... +..++++..+.+.++++.++ ..+..++++.
T Consensus 155 G~e~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 155 GPESGK--GGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCCc--cccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 443211 1111112333220 02225778899999999885 4666666654
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=112.60 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=146.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-----------CCCCCCChHHHHHHhcCCCEEEe
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-----------LPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|.+|+|||.|.||..+|+.-+.. |++|+++|.|++.+.+..++. ..-....+++++.. ...+++.+
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~-~l~ri~~~ 87 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDD-TLDRIKTS 87 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH-HHHHHHHc
Confidence 35799999999999999999988 999999999998777644321 11111224444432 12457788
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhcC--
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~-- 146 (480)
++.++++.++|+||.++-+ +.|++ +..+++|...+++.+++.. .|++. . ..+...++....
T Consensus 88 tnv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~tNTSSl~--l-t~ia~~~~~~srf~ 151 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILATNTSSLS--L-TDIASATQRPSRFA 151 (298)
T ss_pred CCHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEeeccccee--H-HHHHhhccChhhhc
Confidence 9999999999999999854 45666 7788999998988887753 23222 2 223333433322
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHH
Q 011650 147 GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQR 226 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ 226 (480)
|.+| ++|..... +. .|| -++++ +++++..+..+-..+++ .++-+.|. ..++-| .+.
T Consensus 152 GlHF---fNPvPvMK------Lv---EVi-r~~~T--S~eTf~~l~~f~k~~gK-ttVackDt-----pGFIVN---RlL 207 (298)
T KOG2304|consen 152 GLHF---FNPVPVMK------LV---EVI-RTDDT--SDETFNALVDFGKAVGK-TTVACKDT-----PGFIVN---RLL 207 (298)
T ss_pred eeec---cCCchhHH------Hh---hhh-cCCCC--CHHHHHHHHHHHHHhCC-CceeecCC-----Cchhhh---HHH
Confidence 5555 56654321 11 243 44444 68999999998888874 45555442 346667 567
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Q 011650 227 ISSVNAMSALCEATGADVSQVSHAIGFDS 255 (480)
Q Consensus 227 ia~~nE~~~l~~~~gid~~~v~~~~~~~~ 255 (480)
+-+++|..++.++..+..+++..++..+.
T Consensus 208 iPyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 208 IPYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 99999999999999999999999998764
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-10 Score=110.24 Aligned_cols=208 Identities=22% Similarity=0.221 Sum_probs=140.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|+|.||+.+|..|+++ |++|+++-+++. ++++++.+..+.+..- ... -....+++. +....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~-----~~~~~~~~~-~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGG-NFT-----TPVVAATDA-EALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCC-ccc-----cccccccCh-hhcCCCCE
Confidence 8999999999999999999998 889999888766 8999986655543221 000 011223333 34679999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCceEEeeCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINFQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~~ 159 (480)
||++|++.. +.++++.+.+.+++.+.|+. -....|..+.+.+...+... | .+..+-.+-
T Consensus 71 viv~vKa~q---------------~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~il~G---~~~~~a~~~ 131 (307)
T COG1893 71 VIVTVKAYQ---------------LEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETVLGG---VTTHGAVRE 131 (307)
T ss_pred EEEEecccc---------------HHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceEEEE---EeeeeeEec
Confidence 999998642 47889999999999887653 34566777766655544311 1 122333444
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH------------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA------------------ 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------ 221 (480)
.+|...+.- ...+.+|..... .++..+.+.++|+...- ...+..|+....|.|++-|+
T Consensus 132 ~~g~v~~~g--~g~~~ig~~~~~-~~~~~~~i~~~~~~a~~-~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~ 207 (307)
T COG1893 132 GPGHVVHTG--LGDTVIGELRGG-RDELVKALAELFKEAGL-EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLE 207 (307)
T ss_pred CCceEEEec--CCcEEEccCCCC-chHHHHHHHHHHHhCCC-CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhc
Confidence 566654332 234566755321 23677788888876542 34455789999999999882
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCC
Q 011650 222 ---FLAQRISSVNAMSALCEATGA 242 (480)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~gi 242 (480)
.+.+..+.+.|...++.+.|+
T Consensus 208 ~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 208 NPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccC
Confidence 445566788999999999883
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-10 Score=109.99 Aligned_cols=153 Identities=11% Similarity=0.210 Sum_probs=100.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||..++..|.++ | ++|+++|+++++.+.+.+.. .++..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 6999999999999999999987 6 47999999998887765310 13556778888789
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||. ..+.++++.+.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 1357788888888888888775542 12345555544321 1223342
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC 206 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 206 (480)
. ++.+..+. ..++.|.. .+++..+.+.++|+.++. .+..
T Consensus 119 ~--~~~~~~G~---t~~~~g~~---~~~~~~~~~~~ll~~~G~--~~~i 157 (273)
T PRK07680 119 I--TNRALSGA---SLFTFGSR---CSEEDQQKLERLFSNIST--PLVI 157 (273)
T ss_pred h--HHHHhhcc---EEEeeCCC---CCHHHHHHHHHHHHcCCC--EEEE
Confidence 1 11111111 12233321 146677899999999863 4444
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-10 Score=125.34 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=115.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..|.++ | ++|++||+++++.+.+.+.... ...+++..+++.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~~-----------------~~~~~~~~~~~~~a 64 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGVI-----------------DRGEEDLAEAVSGA 64 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCCC-----------------CcccCCHHHHhcCC
Confidence 6899999999999999999987 6 5899999999888776542110 11245667778899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||. ..+.++++.+.++++++++|++.+++.....+.+.+.+.... .. ++..+|...
T Consensus 65 DvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~--~r-~~~~hPm~G 126 (735)
T PRK14806 65 DVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP--AG-FVPGHPIAG 126 (735)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC--Ce-EEecCCcCc
Confidence 999999984 235788888999888889998888887777776666554311 12 355677443
Q ss_pred ccCc----cccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011650 160 AEGT----AINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW 210 (480)
Q Consensus 160 ~~G~----a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 210 (480)
.++. +...++....+++-. ....+++..+.+.++++.++ ..+...+.+
T Consensus 127 ~~~~g~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~ 178 (735)
T PRK14806 127 SEKSGVHAANADLFRNHKVILTP-LAETDPAALARVDRLWRAVG--ADVLHMDVA 178 (735)
T ss_pred CCcchhhhhhhHHhCCCeEEEEC-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 3321 222344333343322 22235778899999999985 355555544
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-09 Score=114.21 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=104.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-cCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-EAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
|||+|||+|.||..+|..|.+. |++|++||++... +...+- + +...++.++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~------------------G-v~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL------------------G-VSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc------------------C-CeEeCCHHHHHhcCCC
Confidence 7999999999999999999987 8999999998643 222210 1 345567777665 589
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||.. .+.++++++.. .++++++|++.+++.....+.+.+.+.. +.+ ++..+|-+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 24566667765 5788999998877763333334433322 223 455777654
Q ss_pred ccCc-----cccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhH
Q 011650 160 AEGT-----AINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSA 212 (480)
Q Consensus 160 ~~G~-----a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~a 212 (480)
.+.. ....++.+ ++++++.. ..+..+.+.++++.++ ..++.++++.-
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~~--~~~~~~~l~~l~~~lG--a~vv~ms~eeH 540 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDDR--RVSRCDSFLDIFAREG--CRMVEMSCAEH 540 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCcc--hHHHHHHHHHHHHHcC--CEEEEeCHHHH
Confidence 4321 11223333 23454321 3455666778898875 46666776553
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=112.87 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=132.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|+|+|.||+.+|..|++. |++|+++++..++++++++ ++..+...+-... -.... .+.++ ...+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~------~~~~~-~~~~~-~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASL------YAIPA-ETADA-AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCccee------eccCC-CCccc-ccccC
Confidence 8999999999999999999998 9999999999889999875 3333322111000 00111 11122 46789
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEee-CCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILS-NPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~ 159 (480)
+||+||++. + +.++++.+.+++.+++.|+. -....+..+.+.+.+.+... -..+++ +..+.
T Consensus 73 ~viv~vK~~------------~---~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY------------D---AEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH------------h---HHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 2 46788899999998886653 34556666666665543210 112222 33445
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH----------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL---------------- 223 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~---------------- 223 (480)
.||...+... ..+.+|... .+..+.+.++|+..+- ......|+...-|.|++.|+-.
T Consensus 135 ~pg~v~~~~~--g~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGH--GFTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEece--EEEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 6676544332 224467442 2345667777775431 2334568999999999988521
Q ss_pred --HHHHHHHHHHHHHHHHcCCC
Q 011650 224 --AQRISSVNAMSALCEATGAD 243 (480)
Q Consensus 224 --~~~ia~~nE~~~l~~~~gid 243 (480)
......+.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 13456788999999998875
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-09 Score=106.65 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=105.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+ |.||..+|..|.+. .+++|+++|++.+ .++++++++.+||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 68999999 99999999999975 3899999998410 1235566789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh---CCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV---SKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~---l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|. +.+.++++++.++ ++++++|++-+++.....+.+ .+.. .. ++..+|-
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcC--CC-EEeeCCC
Confidence 99999984 3457778888875 789999998766653333322 2221 23 5777887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh-HHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS-AEVSKLAA 219 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~ 219 (480)
+..+.. +++....+++- +.. ..+..+.++++++.++ ..+..++++. -+++-++.
T Consensus 112 aG~E~s---~lf~g~~~ilt-p~~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVC-EAR--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALVQ 166 (370)
T ss_pred CCCCCC---cccCCCeEEEe-CCC--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHH
Confidence 665433 23444445443 222 3455778899999875 4666777654 34444443
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-10 Score=107.93 Aligned_cols=207 Identities=12% Similarity=0.173 Sum_probs=147.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH---hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH---VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (480)
+.|+.|||+.||..++.+.+++ |+.|.+|+|+.++++.+.+.... ...+.-..++++- ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 4699999999999999999999 99999999999999986542110 0011122344442 456
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-CcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
...|++.|... +.+...++++.++|.+|.+||+-... .+.|.++..+. .+.+ . .+|..+-.
T Consensus 71 PR~iillvkAG--------------~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el-~k~G--i-lfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAG--------------APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCREL-AKKG--I-LFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCC--------------CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHH-HhcC--c-EEEecCcc
Confidence 77888888653 23456788999999999999986543 55666666544 3332 1 23444433
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC----CC--eEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP----ED--RILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~----~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
-..+|. +..|.+|.||. +++...++.+|+.+.- +. ..++++-+++.++|+++|-.-.--+.++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 334443 45566888885 8899999999987531 11 34567888999999999988878888999
Q ss_pred HHHHHHHH-cCCCHHHHHHHhc
Q 011650 232 AMSALCEA-TGADVSQVSHAIG 252 (480)
Q Consensus 232 E~~~l~~~-~gid~~~v~~~~~ 252 (480)
|...+.++ +|++-.++.++..
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7888777766654
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=106.16 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=112.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||..+|..|.++ | ++|++|++++ ++.+.+.+.. +....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~~-----------------~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDKY-----------------PTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHHc-----------------CCeEEeCCHHHH
Confidence 79999999999999999999987 6 7899999864 4444443310 124456777777
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc-HHHHHHHHHhhcCCCceEEee
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT-AEAIEKILMHNSRGINFQILS 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (480)
+.++|+||+|||. ..+.++++++.++++++++|+.. ..|. .+.+++.+... .+ +=.
T Consensus 62 ~~~aDvVilavpp---------------~~~~~vl~~l~~~l~~~~~ivS~---~aGi~~~~l~~~~~~~----~v-vR~ 118 (277)
T PRK06928 62 FTKCDHSFICVPP---------------LAVLPLLKDCAPVLTPDRHVVSI---AAGVSLDDLLEITPGL----QV-SRL 118 (277)
T ss_pred HhhCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEE---CCCCCHHHHHHHcCCC----CE-EEE
Confidence 8999999999983 23577888888888878766532 2233 23455544321 11 111
Q ss_pred CC---cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHH--HHHHHHHHHHHHHH
Q 011650 155 NP---EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVS--KLAANAFLAQRISS 229 (480)
Q Consensus 155 ~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~--Kl~~N~~~~~~ia~ 229 (480)
.| .....|. ..+..+ +..+++..+.+..+|+.++. .+.+.. .++- =-+.-+--+....+
T Consensus 119 MPN~~~~~g~g~---------t~~~~~--~~~~~~~~~~v~~l~~~~G~--~~~v~E---~~~d~~tal~gsgPA~~~~~ 182 (277)
T PRK06928 119 IPSLTSAVGVGT---------SLVAHA--ETVNEANKSRLEETLSHFSH--VMTIRE---ENMDIASNLTSSSPGFIAAI 182 (277)
T ss_pred eCccHHHHhhhc---------EEEecC--CCCCHHHHHHHHHHHHhCCC--EEEEch---hhCceeeeeecCHHHHHHHH
Confidence 22 1112221 122222 22356778899999999863 443321 1110 00001111222333
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHhc
Q 011650 230 VNAMSALCEAT-GADVSQVSHAIG 252 (480)
Q Consensus 230 ~nE~~~l~~~~-gid~~~v~~~~~ 252 (480)
+..+..-+.+. |++.++..+.+.
T Consensus 183 ~~al~~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 183 FEEFAEAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44455555665 577666555443
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=94.17 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=68.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC---CeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhh
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS---IEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVR 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G---~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+|||+|.||..++..|.++ | ++|+.+ ++++++.+++.+.. ...++. +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKEY------------------GVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHHC------------------TTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHhh------------------ccccccCChHHhhc
Confidence 799999999999999999998 8 999955 99999999887521 233444 7788899
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
.+|+||+|||. . .+.++++++ +...++++||.
T Consensus 61 ~advvilav~p-~--------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKP-Q--------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-G-G--------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECH-H--------------HHHHHHHHH-hhccCCCEEEE
Confidence 99999999983 2 246778888 66777888875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-09 Score=102.48 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=122.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|||+|.||..|+.-|.+++ +..+|++.++++++.+.+.+.. +.. .+++.++++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g~~-~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------GVV-TTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------CCc-ccCcHHHHHhh
Confidence 689999999999999999999982 1269999999999987555421 111 26777778899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEe-eCC-
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQIL-SNP- 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~P- 156 (480)
+|+||+||+ |. .+.++++.+.+ ..++++|| |-...-+.+.+...+.. . .++ -.|
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~-~-----~vvR~MPN 118 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGG-L-----RVVRVMPN 118 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCC-C-----ceEEeCCC
Confidence 999999997 42 24777888877 66788876 33333334556666641 1 111 122
Q ss_pred --cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 --EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 157 --e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.....|. ..+..+. ..+++..+.+.++|+.+++ .+.+..-.---++-+. -.-=+....++..+.
T Consensus 119 t~a~vg~g~---------t~i~~~~--~~~~~~~~~v~~l~~~~G~--v~~v~E~~~da~Tais-GSgPAyv~~~iEal~ 184 (266)
T COG0345 119 TPALVGAGV---------TAISANA--NVSEEDKAFVEALLSAVGK--VVEVEESLMDAVTALS-GSGPAYVFLFIEALA 184 (266)
T ss_pred hHHHHcCcc---------eeeecCc--cCCHHHHHHHHHHHHhcCC--eEEechHHhhHHHHHh-cCCHHHHHHHHHHHH
Confidence 2222221 1222222 2257788899999999863 4444311101111111 111233344667788
Q ss_pred HHHHHcCCCHHHHHHHhc
Q 011650 235 ALCEATGADVSQVSHAIG 252 (480)
Q Consensus 235 ~l~~~~gid~~~v~~~~~ 252 (480)
.-+.+.|++.++..+.+.
T Consensus 185 ~agv~~Gl~~~~A~~l~~ 202 (266)
T COG0345 185 DAGVRLGLPREEARELAA 202 (266)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 888899999888877665
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-09 Score=99.96 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=117.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC---Ce-EEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS---IE-VAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G---~~-V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.+++..|+++ | .+ ++++++ ++++.+.+.+. .++..+++.++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~--~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 64 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT--SKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHV 64 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHH
Confidence 4699999999999999999886 4 23 778887 56777666531 1234567888888
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
+++|+||+|+|.. .+.++++++.++++ +++|+..+ .+. .+.+++.+.. +.. .+-..
T Consensus 65 ~~~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~---~~~l~~~~~~---~~~-v~r~~ 121 (245)
T PRK07634 65 TSVDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIG---PSYLEERLPK---GTP-VAWIM 121 (245)
T ss_pred hcCCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCC---HHHHHHHcCC---CCe-EEEEC
Confidence 9999999999842 24677788887776 56665433 222 2334444422 112 23356
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHH---HHHHHHHHHHHH
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAAN---AFLAQRISSVNA 232 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N---~~~~~~ia~~nE 232 (480)
|....+- ....+.+..+. ..+++..+.++++|+.++. .+... ..+ ...+.- +--+....++..
T Consensus 122 Pn~a~~v-----~~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~---e~~-~~~~~a~~gs~pa~~~~~~~a 187 (245)
T PRK07634 122 PNTAAEI-----GKSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT---EEE-VHQLTAVTGSAPAFLYYFAES 187 (245)
T ss_pred CcHHHHH-----hcCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC---HHH-cchHHhhhcchHHHHHHHHHH
Confidence 6543211 01111222221 1257888999999999863 44432 111 111111 111233455566
Q ss_pred HHHHHHHcCCCHHHHHHHhc
Q 011650 233 MSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~ 252 (480)
+...+.+.|++.++..+++.
T Consensus 188 ~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 188 LIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 77778889999888777765
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=96.53 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=69.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC-CCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLP-IYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+||| +|.||.++|..|+++ ||+|+++++++++++.+++.... +...+. ..++..+ +..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~~-~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTGA-DNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEEe-ChHHHHhcC
Confidence 7999997 899999999999998 99999999999998877642100 000000 0113333 446678999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||+|||.. .+.++++++.+.+. +++|+..+
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~-~~vvI~~~ 101 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELS-GKLVISPV 101 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhcc-CCEEEEec
Confidence 9999999853 34666777777665 47776544
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-09 Score=101.03 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=114.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.||.+++..|.++ + .+++++|+++++. ....+.+..+++.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~--~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 56 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS--NIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAK 56 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC--CCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHH
Confidence 7999999999999999999987 4 3599999876431 0123456667778
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|+|. ..+.++++++.+++.++.+|.+..++...+ ++..+... .. .+
T Consensus 57 ~~D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~---~~-vv----- 109 (260)
T PTZ00431 57 TCDIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVE---AK-IV----- 109 (260)
T ss_pred hCCEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCC---Ce-EE-----
Confidence 99999999873 235788888888887666666655555333 33333211 11 11
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|..|+.... +.+. ..++... ...+++..+.++++|+.++. .+.+.. +.-...=-+.-+--+....++..+...+
T Consensus 110 r~mPn~p~~-~g~g-~t~i~~~-~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~ta~~gsgPA~~~~~~~al~~~~ 183 (260)
T PTZ00431 110 RVMPNTPSL-VGQG-SLVFCAN-NNVDSTDKKKVIDIFSACGI--IQEIKE-KDMDIATAISGCGPAYVFLFIESLIDAG 183 (260)
T ss_pred EECCCchhH-hcce-eEEEEeC-CCCCHHHHHHHHHHHHhCCc--EEEECh-HHcchhhhhcCCHHHHHHHHHHHHHHHH
Confidence 223333211 1111 1233322 22356778899999999853 444421 1101111111111233445566677788
Q ss_pred HHcCCCHHHHHHHhc
Q 011650 238 EATGADVSQVSHAIG 252 (480)
Q Consensus 238 ~~~gid~~~v~~~~~ 252 (480)
.+.|++.++..+.+.
T Consensus 184 v~~Gl~~~~a~~l~~ 198 (260)
T PTZ00431 184 VKNGLNRDVSKNLVL 198 (260)
T ss_pred HHcCCCHHHHHHHHH
Confidence 888999888777654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-08 Score=94.76 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=110.0
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCC
Q 011650 16 TMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGL 95 (480)
Q Consensus 16 lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~ 95 (480)
+|..|.++++.++|+++|++++..+...+.+. .-...++ .+++.++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----------------~~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-----------------IDEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----------------SSEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----------------eeeccCC-HhHhcCCCEEEEcCCH-------
Confidence 57788888444899999999998877643211 0123333 4568999999999973
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEe----eCCcccccCccccccCCC
Q 011650 96 GAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQIL----SNPEFLAEGTAINDLFKP 171 (480)
Q Consensus 96 ~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~----~~Pe~~~~G~a~~~~~~~ 171 (480)
+.+..+++++.++++++++|++.+++.....+.+.+.+... .. ++. ++||..++..+..+++..
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~---~~-~v~~HPM~G~e~~G~~~a~~~lf~g 123 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEG---VR-FVGGHPMAGPEKSGPEAADADLFEG 123 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSS---GE-EEEEEESCSTSSSSGGG-TTTTTTT
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc---cc-eeecCCCCCCccccchhhcccccCC
Confidence 34688999999999999999998877665555555554421 12 233 456666666666677776
Q ss_pred CeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 172 DRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 172 ~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
..+++- +....+++.++.+.++++.++ ..+..++++ .-+++-++.-.-..+..++++.+.
T Consensus 124 ~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~ 184 (258)
T PF02153_consen 124 RNWILC-PGEDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTLA 184 (258)
T ss_dssp SEEEEE-ECTTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CeEEEe-CCCCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666664 323335678999999999875 355566654 344555555555555556655333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=100.61 Aligned_cols=201 Identities=19% Similarity=0.152 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCC
Q 011650 11 YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPT 90 (480)
Q Consensus 11 ~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~ 90 (480)
.||+.+|..|+++ ||+|++++++ ++++.+++.+..+..++.+ . ......+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~-~----~~~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGE-F----QFRPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCc-E----EEcccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999998 9999999997 7788888755444322211 0 0002345566666 67899999999863
Q ss_pred CcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEee-CCcccccCccccccC
Q 011650 91 KTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILS-NPEFLAEGTAINDLF 169 (480)
Q Consensus 91 ~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~~~G~a~~~~~ 169 (480)
.+.++++.+.+++.++++|+. .....|..+.+.+.+.+.. .-..+.+ +..+..||...+.
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~--v~~g~~~~~~~~~~pg~v~~~-- 131 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARR--ILGGVVTHGAVREEPGVVHHA-- 131 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccC--EEEEEEEEeeEEcCCcEEEEe--
Confidence 246788899999988887764 4455666666666553321 0111222 2233456644333
Q ss_pred CCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH---------------------HHHHHHH
Q 011650 170 KPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA---------------------FLAQRIS 228 (480)
Q Consensus 170 ~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (480)
...++.+|..+.. .+..+.+.++|+..+. ......|+....|.|++.|+ .+.+..+
T Consensus 132 ~~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 132 GLGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred ccccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 2345677875331 2455667777776432 24556799999999999884 2345566
Q ss_pred HHHHHHHHHHHcCCC
Q 011650 229 SVNAMSALCEATGAD 243 (480)
Q Consensus 229 ~~nE~~~l~~~~gid 243 (480)
.++|+..++++.|++
T Consensus 209 ~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 209 LMDEVVRVARAEGVD 223 (293)
T ss_pred HHHHHHHHHHhCCCC
Confidence 789999999999875
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=106.15 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=83.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||..+|..++.+ |+ +|+++|++++..+... .++++++... ....++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~----~~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVG----GFDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---Hhhhhhhhcc----CCCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999997 65 8999999766433111 1122222111 11356888899987 89999
Q ss_pred EEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++|...+. ++ ..+++.++++.++|.++.+...+|+ -|.|.+..-.
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di~t~ 126 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDAMTY 126 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHHHHH
Confidence 99999999875521 10 1577888999999999875443333 3577666443
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=94.64 Aligned_cols=210 Identities=14% Similarity=0.138 Sum_probs=133.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCC---------EEEecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKN---------LFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~---------l~~t~d 71 (480)
-||+|+|.|.+|..+|..||.. ||+|..||+.++.++...+.. ++.+..+-++ ...|+ +..|++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~----~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENV----EKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHH----HHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 3899999999999999999998 999999999987665322210 0011111000 11122 356889
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhcCCCce
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNSRGINF 150 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~~ 150 (480)
+.|+.++|=.|-.|+|.. .+++ +..++++...+.+.+|+.. .||+.|+-.- .....+. -
T Consensus 78 l~E~vk~Ai~iQEcvpE~-----------L~lk--k~ly~qlD~i~d~~tIlaSSTSt~mpS~~s--~gL~~k~-----q 137 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPED-----------LNLK--KQLYKQLDEIADPTTILASSTSTFMPSKFS--AGLINKE-----Q 137 (313)
T ss_pred HHHHHhhhhhHHhhchHh-----------hHHH--HHHHHHHHHhcCCceEEeccccccChHHHh--hhhhhhh-----h
Confidence 999999999999999863 2333 6777888887776665532 2355554321 1112211 1
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
.++.+|.. |--- .-...+| -.+- .++++.++.+.+++.++. .++... -|...++-| .+..|.+
T Consensus 138 ~lvaHPvN--PPyf----iPLvElV-PaPw--Tsp~tVdrt~~lM~sigq-~pV~l~----rei~Gf~ln---riq~Ail 200 (313)
T KOG2305|consen 138 CLVAHPVN--PPYF----IPLVELV-PAPW--TSPDTVDRTRALMRSIGQ-EPVTLK----REILGFALN---RIQYAIL 200 (313)
T ss_pred eeEecCCC--CCcc----cchheec-cCCC--CChhHHHHHHHHHHHhCC-CCcccc----cccccceec---cccHHHH
Confidence 34556631 1100 0011222 2222 257889999999999874 344332 234444445 6788999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 231 NAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
||..++....++++.++...++.+
T Consensus 201 ne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 201 NETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHccCcchhhHHHHHhcC
Confidence 999999999999999999988765
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=92.74 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=99.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|+|+|.|.+|..+|.+|++. ||+|++-.+ .+++.+...+... ..++. .+.+++++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~-~~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITG-GSNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------ccccc-CChHHHHhcC
Confidence 89999999999999999999998 999998854 4455555544211 12333 3456778999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCc---------------cc-HHHHHHHHHh
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV---------------KT-AEAIEKILMH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~---------------gt-~~~l~~~l~~ 143 (480)
|+||++||-+ ++..+.+++...+. +++||+ .|+|. ++ ++.+++.+..
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999853 35667777877776 788876 56661 11 1223333322
Q ss_pred hcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch
Q 011650 144 NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW 210 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~ 210 (480)
...-.-|.-+ ....+..+.. .+ ... -+.+.|+ |.++.+.+.++-+.++ ..++-.++..
T Consensus 125 akVVkAFn~i-~a~~l~~~~~-~~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L~ 182 (211)
T COG2085 125 AKVVKAFNTI-PAAVLADLAK-PG-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPLE 182 (211)
T ss_pred cchhhhhccc-CHHHhccCCC-cC-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeeccccc
Confidence 1100112111 1122222111 11 122 2445566 5889999999999885 3456555544
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=95.18 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=94.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|... |++|++++++.++.....+. .++... +++++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~~-s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEVL-TVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCeeC-CHHHHHhcCCE
Confidence 5899999999999999999998 99999988775443322210 123333 77888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
|++|||.. ....++ +++.++++++++|+..+.+.....+ ..+.+ +.++. ...|. .
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~---~~~Vi-~vaPn--~ 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPA---DVDVI-MVAPK--G 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCC---CCcEE-EeCCC--C
Confidence 99999842 125555 7788999999988776654433211 11111 23332 33454 2
Q ss_pred cCcccccc----CCCCeEE-EEccCCcchHHHHHHHHHHHhccCC
Q 011650 161 EGTAINDL----FKPDRVL-IGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~~~~----~~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
||..+... ...+-++ +..+ .+.++.+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 33322221 1112233 2222 247788999999999874
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-09 Score=92.70 Aligned_cols=93 Identities=28% Similarity=0.274 Sum_probs=64.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||.|.+|..++..|.++ ||+|.++ .++++..+++.... +... ..++++.+..+|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~~-~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAGA-ILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------cccc-ccccccccccCC
Confidence 6999999999999999999998 9999886 67776766666421 1122 234566789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh--CCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV--SKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~--l~~~~iVi~~STv 129 (480)
++|||||. +.+.++.++|... .+++++|+-+|..
T Consensus 71 lv~iavpD---------------daI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 71 LVFIAVPD---------------DAIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp EEEE-S-C---------------CHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred EEEEEech---------------HHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 99999984 2478889999987 7899999988743
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=98.03 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=77.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||.++|..|... |++|++||++++.... ..++++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999987 9999999998754211 11235678888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... +...+ ..+.+.+.++++.++|+.|-...=..+.+.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998632 22222 345677889999999987754433445566667653
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.2e-08 Score=97.13 Aligned_cols=119 Identities=24% Similarity=0.299 Sum_probs=79.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..++.. |+ +|+++|+++++.+..... +.+.. .......+++.++|+++ +++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~----~~~~~~~~i~~~~d~~~-~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAA----PVEGFDTKITGTNDYED-IAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhh----hhcCCCcEEEeCCCHHH-HCCC
Confidence 79999999999999999999987 55 999999998775433210 00000 00011245677788854 8999
Q ss_pred CEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 80 NIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+||+++..|..... ++ .-++..++++.+.+.++.+++.+|+. |.|....
T Consensus 72 DiVii~~~~p~~~~~---~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~~ 125 (307)
T PRK06223 72 DVVVITAGVPRKPGM---SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDAM 125 (307)
T ss_pred CEEEECCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 999999987764311 10 12446678888888888765544443 5665553
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-07 Score=89.46 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=124.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-----eEEEEeCCH-------HHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-----EVAVVDISV-------PRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-----~V~~~D~~~-------~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
.||+|||.|+||+++|+.+..+..++ +|..|-..+ ...+-+|+. ++.-|-|+.+ ...++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 37999999999999999998753223 455554322 222334443 3444455532 2457899
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-C---cc-cHHHHHHHHHh
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-P---VK-TAEAIEKILMH 143 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~---~g-t~~~l~~~l~~ 143 (480)
++|+.+++.+||+++..+|.. ++..++++|..+++++...|..+.. . +| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 999999999999999999842 4577899999999999887765532 2 33 23456677766
Q ss_pred hcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH
Q 011650 144 NSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA 221 (480)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~ 221 (480)
.. |....++.+|..+.+-. .+.+. .-.+|+.+. .+.-..++++|++.. .......|..+.|.+.-+.|.
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa--~~~f~--e~tIg~~~~---~~~~~~l~~lf~~p~-FrV~~~~D~~~VEi~GaLKNV 229 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVA--NEKFC--ETTIGYKDK---KEAGILLKKLFRTPY-FRVVVVEDADGVEICGALKNV 229 (372)
T ss_pred Hh-CCCceeecCCchHHHHH--hcccc--ceeEeccch---hhcchHHHHHhCCCc-eEEEEeccchHhHHhhhHHhH
Confidence 54 35566778887665432 12222 234677632 333335888888743 223445788999999988885
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-06 Score=82.57 Aligned_cols=248 Identities=15% Similarity=0.092 Sum_probs=146.1
Q ss_pred CceEEEECCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH
Q 011650 1 MVKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60 (480)
Q Consensus 1 ~mkI~VIGlG~--------------------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~ 60 (480)
||||+|.|.|+ -|..||..||+. ||+|++.|.|.+-.+ +++.+.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~d--------------d~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMD--------------DEHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccC--------------HHHHHH
Confidence 79999999995 478899999999 999999998754322 111222
Q ss_pred hcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-HHHHH
Q 011650 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEK 139 (480)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~ 139 (480)
+...+++.++|-.++++++++.++-+| +.. ....+.+.|.++++.+.+|.+..|++|-.. ..+..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLFTP--FGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLFTP--FGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEecc--cch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 223467777777778999999999965 421 235678999999999999988888876543 33444
Q ss_pred HHHhhcCCCceEEe-eCCcccccCccccccCCCCeEEEEccCC----cchHHHHHHHHHHHhccCCCCeEEeCCchhHHH
Q 011650 140 ILMHNSRGINFQIL-SNPEFLAEGTAINDLFKPDRVLIGGRET----PEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV 214 (480)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~----~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.|+-.. .++.+. ++|. ..||...++ .+++|+..+ .++++..++..++.++.++ ..++.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~-----~yviagr~t~g~elATeEQi~r~velaes~Gk--~~yv~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHG-----HYVIAGRSTEGKELATEEQIERCVELAESTGK--EVYVLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCc-----eEEEeccCCCceeeccHHHHHHHHHHHHhcCC--ceEecCHHHHHH
Confidence 443221 233332 3553 356665433 345665433 2246788888999998864 344433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhcCC-CCCCCccccCCCCccccchhhhHHHHHHHHHHCCCc
Q 011650 215 SKLAANAFLAQRISSVNAMSALCEA-TGADVSQVSHAIGFD-SRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (480)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~gid~~~v~~~~~~~-~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~ 290 (480)
+.=+.-...+..++.+-+......+ .|+..+.+-+-+-.. ..+ ..+--..|++|-.=.-|+..|...++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqTm--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 2222223334455555555555553 355443332211100 000 1111223455554455888888888876543
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-08 Score=97.77 Aligned_cols=120 Identities=26% Similarity=0.397 Sum_probs=83.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|+|+ |++|..+|..|+.. |+ +|+++|+++ +.++++....++.+ .+.......++++++|.++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d----~~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYD----ALAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhh----chhccCCCcEEEECCCHHH-hCC
Confidence 79999998 99999999999987 65 599999954 44455544333321 1111100124666778665 999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+|+.+|...+. .+.|+ +.++++.+.|.++.+.+.+|+..++++..|
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t 128 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT 128 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence 9999999998865421 12455 778889999998887666677766666665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=95.14 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=80.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|... |.+|++||++....+.... .+++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 5899999999999999999887 9999999987532221111 123445678898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-. +++..+. -++....++++.++|+.+....-..+.+.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99999842 2333332 24567778999999998877666667777777764
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-07 Score=93.81 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=79.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|..- |.+|++||++....+.... .++....+++++++.||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5799999999999999999886 9999999987432221111 123445688898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|... +...+. -+++...++++.++|+.+....-..+.+.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999998532 233332 24577889999999998876655566677777754
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-07 Score=92.80 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=78.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||+++..... .. ..... .+++++++.||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 4899999999999999999887 9999999997543211 11 01222 467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|... ++..+. -++..+.++++.++|+.|+...-..+.+.+.|++.
T Consensus 208 V~l~lP~t~-----------~T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTK-----------ETYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 999998532 122221 23566778999999999988777777787777764
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=95.01 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=78.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|++. .|.+|++||+++... ... .+..++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-~g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKG-YGSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 6899999999999999999542 288999999876432 111 12345678888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+.. ....+.++++.++|+.|+...-.++.+...+++.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 21211 3456778999999999988777777777777653
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.1e-06 Score=82.68 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=89.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. ++..+ +..++++.||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 34444444321 23333 4677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+|++|||.. .....+.+++.+.++++.+|.....+.... +...+.+ +.++ +--.|.-
T Consensus 62 iVvLaVpp~--------------~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~---~~~~~~~---~~~V-vrvmPn~-- 118 (314)
T TIGR00465 62 LIMNLLPDE--------------VQHEVYEAEIQPLLKEGKTLGFSHGFNIHF---VQIVPPK---DVDV-VMVAPKG-- 118 (314)
T ss_pred EEEEeCCcH--------------hHHHHHHHHHHhhCCCCcEEEEeCCccHhh---ccccCCC---CCcE-EEECCCC--
Confidence 999999832 013445677888888888776544443222 2222221 1232 2234532
Q ss_pred cCccc-cc---cCCCCeEE-EEccCCcchHHHHHHHHHHHhccCC
Q 011650 161 EGTAI-ND---LFKPDRVL-IGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 161 ~G~a~-~~---~~~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
|+..+ .. -...+-++ ++.+ .+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~~~---~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVEQD---PTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 22211 00 01112232 2221 256788899999999874
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-07 Score=90.73 Aligned_cols=104 Identities=9% Similarity=0.116 Sum_probs=76.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....+++++++.||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 4799999999999999987765 9999999986321 11 0 0113478888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... ...+. -++....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999985321 12121 24456678999999999988777777888888764
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=90.71 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|.+|... |++|+++++.....+.... .++.+ .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 4799999999999999999998 9999999875433332221 12333 378889999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST 128 (480)
|++++|.+.+ ..++ +.+.+.++++++++..-.
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCC
Confidence 9999996421 2233 568899999998876543
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=88.37 Aligned_cols=110 Identities=21% Similarity=0.401 Sum_probs=74.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ | ++|.++|+++++.+. +... .++.++ ....++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~~- 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYAD- 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHHH-
Confidence 7999999999999999999998 6 699999999877654 3322 222211 1223567654
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||+|++.|..... + +. +.+.+++..+.|.++.+.+.+++. |.|...
T Consensus 65 l~~aDiViita~~~~~~~~---~-r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tNP~d~ 121 (308)
T cd05292 65 CKGADVVVITAGANQKPGE---T-RLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TNPVDV 121 (308)
T ss_pred hCCCCEEEEccCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 9999999999998765411 1 12 334566677777776655444443 455544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=83.41 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=74.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|+|+|.||..++..|++.+ +++|+++|+++++.+++.+.... .......++.++++.++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 57999999999999999999872 37899999999888776531100 0000123455666789999
Q ss_pred EEEEccCCCC-cCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
||.|+|.+.. .+ ..-+ . ...++++++|++.|++|+.+ .+.+..++.
T Consensus 85 vi~~~~~~~~~~~------~~~~-----~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD------ELPL-----P----PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC------CCCC-----C----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987653 10 0000 0 11257899999999987665 555555543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.3e-07 Score=87.42 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=54.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. +....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987511455 557999999888765421 134567888877899
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|+|.
T Consensus 63 DvVvi~a~~ 71 (265)
T PRK13304 63 DLVVECASV 71 (265)
T ss_pred CEEEEcCCh
Confidence 999999863
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.7e-07 Score=87.48 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||||||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 68999999999999999998632478876 7899998877665421 11234567888788999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEE
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQI 152 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
+|++|+|+..+ .+.... .++.|+-|+..|+......+++.+..++.+ ..+++
T Consensus 70 ~Vvi~tp~~~h---------------~e~~~~---aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g--~~l~v 121 (271)
T PRK13302 70 IVVEAAPASVL---------------RAIVEP---VLAAGKKAIVLSVGALLRNEDLIDLARQNG--GQIIV 121 (271)
T ss_pred EEEECCCcHHH---------------HHHHHH---HHHcCCcEEEecchhHHhHHHHHHHHHHcC--CEEEE
Confidence 99999886421 222222 334566555555433333455555555543 44444
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=77.28 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=75.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|.++|..|..+..+.++.++|+++++.+.... +++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~--------Dl~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEAL--------DLSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH--------HHHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeeh--------hhhhhhhh-ccccccccccccccccccc
Confidence 89999999 99999999999987555789999999887665442 11111111 1112334444455699999
Q ss_pred EEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|+++...|..+. .++ ..+...+++..+.|.++.+.+ +++. -|.|....
T Consensus 72 ivvitag~~~~~g---~sR~~ll~~N~~i~~~~~~~i~~~~p~~-~viv-vtNPvd~~ 124 (141)
T PF00056_consen 72 IVVITAGVPRKPG---MSRLDLLEANAKIVKEIAKKIAKYAPDA-IVIV-VTNPVDVM 124 (141)
T ss_dssp EEEETTSTSSSTT---SSHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHHH
T ss_pred EEEEecccccccc---ccHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEE-eCCcHHHH
Confidence 9999998765431 111 122344566667777777544 4433 36676643
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=87.13 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=75.7
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|+||..+|..++.+ |. +|+++|+++++.+...- ++.+.... ....+++.++|.++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999987 65 99999999875432221 01111110 01245777778664 899999
Q ss_pred EEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+|+.+|...+. ++ .-++..++++++.|.++.+++.+|+. |.|...
T Consensus 70 VIit~g~p~~~~~---~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~--sNP~di 120 (300)
T cd01339 70 VVITAGIPRKPGM---SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV--TNPLDV 120 (300)
T ss_pred EEEecCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 9999988765421 11 12556677888888888866554443 355544
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=79.98 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=72.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||++......... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 4799999999999999999987 9999999999876542222 1233 4588898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|...... .-.+ +.....++++.++|+.+-...=..+.+.+.|++.
T Consensus 95 v~~~~plt~~T~-----~li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETR-----GLIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTT-----TSBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccc-----eeee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 999998422111 1222 2345678899999986533322234466777653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.9e-07 Score=79.30 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|+|+|.||+.+|..|++. |++|.++++.+ +.+.+++....+.....+.. ........+..+....+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDET-----VQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEE-----EEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEeccccee-----cccccccCcchhccCCCcEEE
Confidence 78999999999999999997 99999999998 88888764433321110000 001112233323368999999
Q ss_pred EEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHH
Q 011650 84 VSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l 141 (480)
+||++. + ++++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~------------~---~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY------------Q---LEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG------------G---HHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc------------c---hHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 999853 2 36788889999998866653 345556666665554
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-06 Score=85.31 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=85.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|||||+|.+|..+|..+..- |.+|++||+ .+...+... ......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~~---------------------~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGVD---------------------GVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhccc---------------------cceecccHHHHHhhCC
Confidence 4799999999999999999887 999999999 332211111 1233467888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|.+.+|-- +++..+.. .+....++++.++|+.+=.+.=..+.+.+.|++... +.|+ |.+|
T Consensus 200 iv~lh~PlT-----------~eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV---f~~E 263 (324)
T COG0111 200 ILTLHLPLT-----------PETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV---FEEE 263 (324)
T ss_pred EEEEcCCCC-----------cchhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC---CCCC
Confidence 999999852 22232322 234456889999999775444444557777765422 2343 5667
Q ss_pred ccccCccccccCCCCeEE
Q 011650 158 FLAEGTAINDLFKPDRVL 175 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv 175 (480)
-..+++. ++..+.|+
T Consensus 264 Pl~~~~p---L~~~pnV~ 278 (324)
T COG0111 264 PLPADSP---LWDLPNVI 278 (324)
T ss_pred CCCCCCh---hhcCCCeE
Confidence 6655533 44444454
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-06 Score=72.09 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=56.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
|||+|||+|.+|......+.+..++.++. ++|+++++.+.+.+. -++...+|+++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 69999999999999998888764577766 689999988876541 13447788888776 7
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 63 ~D~V~I~tp~~ 73 (120)
T PF01408_consen 63 VDAVIIATPPS 73 (120)
T ss_dssp ESEEEEESSGG
T ss_pred CCEEEEecCCc
Confidence 89999998864
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=87.21 Aligned_cols=107 Identities=7% Similarity=0.075 Sum_probs=73.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..|... |++|++||++++... +.. ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 4799999999999999999987 999999998653211 000 01112467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.. +++..+. -+.....++++.++|+.+=.+.=-.+.+.+.|++.
T Consensus 194 vv~~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNT-----------PETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCC-----------HHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 99999853 2223232 24566778999999986643333345566667654
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-06 Score=90.62 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=77.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+....- .... ...... ++++.++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~-~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISPE-RAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCChh-HHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 4799999999999999999887 99999999853211 1111 123334 78888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... ...+.. .+....++++.++|+.|..+.=..+.+.+.|++.
T Consensus 198 V~l~lP~t~~-----------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPE-----------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChH-----------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 9999985322 122221 4566778999999998877666667777777654
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=89.91 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=77.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+.... +.... -+....++++++++.||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999984221 11111 123445678898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+.. ......++++.++|+.|..+.=..+.+.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985322 122221 3445678999999999887666667777777764
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.8e-06 Score=83.93 Aligned_cols=114 Identities=20% Similarity=0.266 Sum_probs=74.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|||+|++|.++|..++.+ | ++++++|+++++++.+... ++.........++..++|++ .+++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCE
Confidence 68999999999999999987 6 7899999999888776652 22211110112345566765 5999999
Q ss_pred EEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+|..+|.... .+ +. ....+++..+.|.++.+. .+|++- |.|....
T Consensus 70 VIitag~p~~~~---~~-R~~l~~~n~~i~~~~~~~i~~~~p~-~~viv~-sNP~d~~ 121 (300)
T cd00300 70 VVITAGAPRKPG---ET-RLDLINRNAPILRSVITNLKKYGPD-AIILVV-SNPVDIL 121 (300)
T ss_pred EEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc-cChHHHH
Confidence 999999886541 11 12 223455666677777644 444432 4665553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-05 Score=73.53 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=37.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 5899999999999999999998 9999999999988887764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=67.33 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=108.5
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||. |.||..++..|.+. |+.|+ +.+||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999988 88874 13689
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.. .+.+.++++. .+|++-+++... +. +. . .+ ++..+|-+.
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~~----i~---~~-~--~~-~vg~HPMfG- 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKWP----FK---KY-S--GK-IVSIHPLFG- 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCHH----HH---Hh-c--CC-EEecCCCCC-
Confidence 999999842 2234444432 356665544321 22 11 1 13 467788764
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
|..+..+++. .+++-.. ..+++..+.++++++ + ..+..++++.- +-.+|++.-+..+....
T Consensus 81 p~~a~~~lf~--~~iv~~~--~~~~~~~~~~~~l~~--G--~~~~~~t~eeH-----------D~~~A~ishLpH~ia~a 141 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIND--ISRDNYLNEINEMFR--G--YHFVEMTADEH-----------DLLMSEIMVKPYIISMI 141 (197)
T ss_pred CCcCcccccc--eEEEECC--CCCHHHHHHHHHHHc--C--CEEEEeCHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 4455455542 3333232 235677888999987 2 35666776542 22222222222221110
Q ss_pred CCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHC-CCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 241 GADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN-GLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
-.+. . . .+ .++|| + .++++|+.. +-+ ..+|......|.+- ..++++++.++
T Consensus 142 l~~~-------~-~-----~~--~t~~f------r---~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~~ 193 (197)
T PRK06444 142 LKDI-------K-S-----DI--KTGSF------D---KLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERLN 193 (197)
T ss_pred HccC-------C-C-----CC--CCccH------H---HHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHHh
Confidence 0010 0 0 11 22333 3 444556543 333 67999999999886 66677777664
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-06 Score=83.30 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=74.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..++......++.++|+++++.+..... +.....-.....++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999998874345899999998765543321 000000000124666688886 999999
Q ss_pred EEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||++...|... +.++ .-+...+++..+.|.++.+.+ ++++- |.|...
T Consensus 75 vvitaG~~~k~---g~~R~dll~~N~~i~~~~~~~i~~~~p~~-~vivv-sNP~d~ 125 (312)
T cd05293 75 VIVTAGARQNE---GESRLDLVQRNVDIFKGIIPKLVKYSPNA-ILLVV-SNPVDI 125 (312)
T ss_pred EEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEc-cChHHH
Confidence 99998876543 1111 112234566667777775444 44332 456554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-06 Score=81.19 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=73.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..|+.+ | ++|+++|+++++.+.+... +...... ...... .+.+.++ +.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~--g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~-~~~~~~i~~~~~~~-l~~ 68 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ--GIADELVLIDINEEKAEGEALD--------LEDALAF-LPSPVKIKAGDYSD-CKD 68 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHhHhh--------HHHHhhc-cCCCeEEEcCCHHH-hCC
Confidence 5899999999999999999988 6 6999999999887765432 2111100 011222 3455554 899
Q ss_pred CCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+||+|++.|.... .++. -+...+++..+.|.++.+. .+|++ -|.|..+.-
T Consensus 69 aDIVIitag~~~~~g---~~R~dll~~N~~i~~~~~~~i~~~~~~-~~viv-vsNP~d~~~ 124 (306)
T cd05291 69 ADIVVITAGAPQKPG---ETRLDLLEKNAKIMKSIVPKIKASGFD-GIFLV-ASNPVDVIT 124 (306)
T ss_pred CCEEEEccCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEE-ecChHHHHH
Confidence 999999998875431 1111 1223355666666666654 44433 246666543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-06 Score=72.84 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCC-------c-cc--cCCCCccccchhhhHHH
Q 011650 210 WSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGP-------K-FL--NASVGFGGSCFQKDILN 279 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~-------~-~~--~pg~g~gG~c~~kD~~~ 279 (480)
+.+..+|+++|.+...++..+.|...++++.|+|++.+.++++..+.-++ . ++ .+.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 36789999999999999999999999999999999999999997652111 1 11 35677999999999999
Q ss_pred HHHHHHHCCCchhhhHHHHHH
Q 011650 280 LVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~ 300 (480)
..+.+++.|+| .++.+.+.
T Consensus 81 ~~~~a~~~g~~--~p~~~~~~ 99 (122)
T PF14833_consen 81 ALDLAKEAGVP--LPLGSAAR 99 (122)
T ss_dssp HHHHHHHTT-----HHHHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHH
Confidence 99999999998 66666543
|
... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.9e-06 Score=82.45 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..|... |.+|+++++++++.+.+.+... ..+ ...++.+.+.++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~----------------~~~-~~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGL----------------IPF-PLNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCC----------------eee-cHHHHHHHhccCCE
Confidence 4799999999999999999987 8999999999987665543110 001 12345666889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|+|.+.. -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 9999875321 1234456788999999998886663
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=84.66 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=59.4
Q ss_pred ceEEEECCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|.||.+++. .++. ..+|++|++||+++++.+.+... +...+... ...+++.|+|+++++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~--------~~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL--------AKKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999998776 3431 12488999999999998876542 11122111 124678899999999
Q ss_pred hcCCEEEEEccCCC
Q 011650 77 REANIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||++++...
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998653
|
linked to 3D####ucture |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=81.02 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=71.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||..+|..++.. |+ +|.++|+++++...-.-. +....... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld--------~~~~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALD--------ISHSNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHH--------HHhhhhccCCCeEEEECCCHH-HhCCC
Confidence 5899999999999999999887 74 899999999864321100 00000000 112566678886 58999
Q ss_pred CEEEEEccCCCCcCCCCC-----CC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGA-----GK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~-----~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||++...|... + . ++ .-+...+++..+.|.++.+++ ++++- |.|...
T Consensus 76 DiVI~tag~~~~~-~--~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv~-sNP~di 133 (321)
T PTZ00082 76 DVVIVTAGLTKRP-G--KSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIVI-TNPLDV 133 (321)
T ss_pred CEEEECCCCCCCC-C--CCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEe-cCcHHH
Confidence 9999998665422 0 0 00 113444666777777777554 33332 345443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=71.97 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|..|...|.+|.+. |.+|++-.+..+ ..++.++ .+++. .+.+|+++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~-------------------~Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKA-------------------DGFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHH-------------------TT-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHH-------------------CCCee-ccHHHHHhhCC
Confidence 5899999999999999999998 999998877655 4444443 23443 46788899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|++.+|... -.+++ ++|.++++++++++...
T Consensus 63 vV~~L~PD~~---------------q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDEV---------------QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HHH---------------HHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChHH---------------HHHHHHHHHHhhCCCCCEEEeCC
Confidence 9999987421 24454 88999999999988644
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=81.67 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=75.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999999876 9999999985321 00 123345578999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|-.. +...+. -++....++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMI--GAEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999998421 222222 13355678999999998866555566677777654
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-05 Score=80.04 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||++...-....-+ .+ ......+... . . ...+++++++.||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~-~~--~~~~~~~~~~---~-~-~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL-IP--NGDVDDLVDE---K-G-GHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc-cc--cccccccccc---c-C-cccCHHHHHhhCCE
Confidence 4799999999999999999876 99999999874321110000 00 0000000000 0 1 13478888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|.... ...+. -++....++++.++|+.+-...=-.+.+.+.|++.
T Consensus 230 Vvl~lPlt~~-----------T~~li--~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIV--NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhccc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999984321 12122 23456678999999987643332334566666653
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-05 Score=75.60 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=101.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aDv 81 (480)
+|||||.|.||.-+|..|.++ ||.|++.||++ .+.+.+.. | ....+++.+. -+..|+
T Consensus 54 ~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y-----------------g-~~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY-----------------G-SAKFTLLHDLCERHPDV 111 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh-----------------c-ccccccHHHHHhcCCCE
Confidence 799999999999999999999 99999999976 34443310 1 1122344442 268999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEE---eeCCc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQI---LSNPE 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v---~~~Pe 157 (480)
|++||.- ..++.+++...+. ++.+++++...++..-..+.+.+.|.+. .|+-+ .++|+
T Consensus 112 vLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd---fDIlctHpmfGPk 173 (480)
T KOG2380|consen 112 VLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD---FDILCTHPMFGPK 173 (480)
T ss_pred EEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc---cceEeecCCcCCC
Confidence 9999742 2245666666655 7889999876555322222344444432 23322 23555
Q ss_pred ccccCccccccCCCCeEE----EEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVL----IGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vv----iG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (480)
...++ ....+-|+ +|- ....++.+|.+.++|..... ..+.++.+ |--|+...++.-++.++
T Consensus 174 svnh~-----wqglpfVydkvRig~--~~~r~ercE~fleIf~cegc--kmVemS~e--eHDkiaAdsQfVTHtag 238 (480)
T KOG2380|consen 174 SVNHE-----WQGLPFVYDKVRIGY--AASRPERCEFFLEIFACEGC--KMVEMSYE--EHDKIAADSQFVTHTAG 238 (480)
T ss_pred cCCCc-----cccCceEEEEeeccc--cccchHHHHHHHHHHHhcCC--eEEEEEee--cccccccchhHHHHHHH
Confidence 33322 11112222 331 11236789999999998754 23333322 33444444444444444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.2e-06 Score=81.35 Aligned_cols=73 Identities=27% Similarity=0.368 Sum_probs=57.5
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.| .||.|||..|.++ |++|++|++. +.+++++++.||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~---------------------------------t~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSR---------------------------------STDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhcCC
Confidence 479999996 9999999999998 9999999753 125667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +... .+++|++||+.|+.
T Consensus 205 IVIsavg~~~~--------------v~~~------~ik~GaiVIDvgin 233 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDAD------WLKPGAVVIDVGIN 233 (301)
T ss_pred EEEEecCChhc--------------ccHh------hccCCcEEEEeccc
Confidence 99999986521 1221 27899999987654
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.6e-05 Score=71.64 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=100.8
Q ss_pred CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHH
Q 011650 26 SIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTY 105 (480)
Q Consensus 26 G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~ 105 (480)
.++|++++|++++.+.+.+. -+...+++..+++..||+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 124556777777889999999998 52 3
Q ss_pred HHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchH
Q 011650 106 WESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGM 185 (480)
Q Consensus 106 v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~ 185 (480)
+.++++++.+.+.++++|+. ....=+.+.+.+.+... .. ++ |..|-....- ......+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~ivS--~~agi~~~~l~~~~~~~---~~--iv----R~mPn~~~~~-~~g~t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLIS--IAAGVTLEKLSQLLGGT---RR--VV----RVMPNTPAKV-GAGVTAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEEE--ecCCCCHHHHHHHcCCC---Ce--EE----EECCChHHHH-hCCeEEEecCC--CCCH
Confidence 57778888877776777663 33333344555555321 11 11 2222211111 11112222222 2246
Q ss_pred HHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 186 KAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 186 ~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+..+.+.++|+.++. .+.+. -..-...=-+.-+--+....++..+..-+.+.|++.++..+.+.
T Consensus 122 ~~~~~v~~lf~~~G~--~~~v~-E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 122 EDRALVLALFKAVGE--VVELP-EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHHHHHHHHHHhCCC--EEEEC-HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677899999999863 44442 11101000111112233455566677778888999888887765
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.2e-05 Score=77.56 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=69.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+..... . ..+. ..++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~----~-------------------~~~~-~~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK----N-------------------EEYE-RVSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc----c-------------------cCce-eecHHHHhhcCCE
Confidence 4799999999999999988765 89999999853210 0 0122 2368888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|++++|-... ...+. -+.....++++.++|+.+=.+.=-.+.+.+.|++
T Consensus 200 v~lh~Plt~~-----------T~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEK-----------TKNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCch-----------hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 9999984221 11111 1234566899999998664333334456666665
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=76.97 Aligned_cols=118 Identities=23% Similarity=0.332 Sum_probs=78.0
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 4 ICCIGA-GYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+|||+ |.||..+|..|+.. | .+|.++|+++++.+..... +..........+++.++|+++++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~--~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~ 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG--SVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKD 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC--CCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCC
Confidence 689999 99999999999987 6 7999999998776654431 1111111112467788887788999
Q ss_pred CCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++...|... + .++ .-+...+++..+.+.++.+ +.++++- |.|.+....
T Consensus 71 aDiVv~t~~~~~~~-g--~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~-tNP~d~~t~ 127 (263)
T cd00650 71 ADVVIITAGVGRKP-G--MGRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVV-SNPVDIITY 127 (263)
T ss_pred CCEEEECCCCCCCc-C--CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHHHH
Confidence 99999988655432 1 010 1123456677777777774 4555443 577766443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-05 Score=76.97 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=71.3
Q ss_pred ceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|||||+|.+|..+|..+. .- |.+|.+||+....-. ... .+.++ .++++.++.||
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f--gm~V~~~~~~~~~~~-~~~-------------------~~~~~-~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF--NMPILYNARRHHKEA-EER-------------------FNARY-CDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC--CCEEEEECCCCchhh-HHh-------------------cCcEe-cCHHHHHHhCC
Confidence 47999999999999999886 44 889999998632110 000 11233 37888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++++|-.. ++..+. -+.....++++.++|+.+=.+.=-.+.+.+.|++.
T Consensus 203 vv~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 203 FVCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999998422 222222 23355678999999986644333345577777654
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-05 Score=81.60 Aligned_cols=81 Identities=21% Similarity=0.206 Sum_probs=57.5
Q ss_pred CceEEEECCChhHHHHHH--HHH--HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMA--VIA--LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~--~La--~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++.+....- +...+... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 789999999999977765 454 223467999999999887743220 11111111 12457889998888
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998754
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=78.40 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=69.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||.|.+|..++..|... |.+|+++|+++++.+...+-.. ......++.+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 4899999999999999999988 8999999999887665543110 01111345566789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|.+. ..+...+.++++.+|++.++.|.++
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987421 1234556678899999988777664
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=81.88 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=74.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+..... . +... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~-------------------~~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----E-------------------GDGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----c-------------------cCcc-ccCHHHHHhhCCE
Confidence 4799999999999999999987 99999999753210 0 0111 2467888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|--.. + ...+..+. -+.....+++++++|+.|..+.-..+.+.+.+++.
T Consensus 171 V~lh~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKE--G-----EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCC--c-----cccccccC--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999984211 0 01111121 13455678999999998877666666677777653
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-05 Score=74.80 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=74.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++||||+|.+|..+|..+..- |.+|..||+.+. -+.-.. .+.++.+ +++.++.||+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F--gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF--GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 5899999999999999999843 899999999864 111111 2244555 8888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+.+|-- ++...+.. +...+.++++.++|+.+=.+.=-.+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99999842 23333322 3455678999999986644333345566777664
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.8e-05 Score=76.84 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=71.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhc-CCCEEE-ecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR-GKNLFF-STDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~-~~~l~~-t~d~~~a~~~aD 80 (480)
||+|||+|.+|.++|..|+.+...-++.++|+++++.+..... +.... ... ..+.+. +.|+++ +++||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D--------L~~~~-~~~~~~~~~i~~~~y~~-~~~aD 70 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD--------FHHAT-ALTYSTNTKIRAGDYDD-CADAD 70 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH--------HHhhh-ccCCCCCEEEEECCHHH-hCCCC
Confidence 7999999999999999998873224899999988765433221 00000 000 012222 456654 99999
Q ss_pred EEEEEccCCCCcCCCCCCC-CC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGK-AA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~-~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++...|..+ +.++ +. +.+.+++..+.+.++.+. .+++. -|.|..+...
T Consensus 71 ivvitaG~~~kp---g~tr~R~dll~~N~~I~~~i~~~i~~~~p~-~i~iv-vsNPvDv~t~ 127 (307)
T cd05290 71 IIVITAGPSIDP---GNTDDRLDLAQTNAKIIREIMGNITKVTKE-AVIIL-ITNPLDIAVY 127 (307)
T ss_pred EEEECCCCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEE-ecCcHHHHHH
Confidence 999998876543 1121 12 234455666666666644 44333 4677666443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-05 Score=77.99 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=71.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.||.++|..++.. | .++.++|+++++.+...-.. ....... ...+++.++|++ ++++|
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl--------~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDL--------KHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHH--------hhhccccCCCeEEEeCCCHH-HhCCC
Confidence 6999999999999999999887 6 68999999987654321100 0000000 012456667887 58999
Q ss_pred CEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||++...|.... .+ +. ....+++..+.+.++.++..+++. |.|...
T Consensus 75 DiVVitag~~~~~g---~~-r~dll~~n~~i~~~i~~~i~~~~p~a~vivv--sNP~di 127 (319)
T PTZ00117 75 DVVVITAGVQRKEE---MT-REDLLTINGKIMKSVAESVKKYCPNAFVICV--TNPLDC 127 (319)
T ss_pred CEEEECCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cChHHH
Confidence 99999995543220 00 11 113456777777777654433333 455544
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.3e-05 Score=77.66 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.+|.++|..++.+....++.++|+++++.+..... +...........++.++++++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998773234899999998766543321 111100000123444467776 899999
Q ss_pred EEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||++...|... +.+ +.| ...+++..+.|.++.+.+.+|+. |.|..+..
T Consensus 109 VVitAG~~~k~---g~t-R~dll~~N~~I~~~i~~~I~~~~p~~ivivv--tNPvdv~t 161 (350)
T PLN02602 109 CIVTAGARQIP---GES-RLNLLQRNVALFRKIIPELAKYSPDTILLIV--SNPVDVLT 161 (350)
T ss_pred EEECCCCCCCc---CCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCchHHHH
Confidence 99998766433 111 222 23455666667776554443333 46665543
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=75.20 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCC-CCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR-INAWNSDQL-PIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|||||+|.+|..+|..+++.+ |.+|++||+.... .+....... ...+.+.. ....+...+++++++.|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMEEVLREA 237 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccc-------cccccccCCHHHHHhhC
Confidence 47999999999999999986433 8999999987532 111100000 00000000 00123346889999999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|+|++++|-.. ++..+.. .+....++++.++|+.+-.+.=-.+.+.+.|++
T Consensus 238 DiV~lh~Plt~-----------~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 238 DVISLHPVLDK-----------TTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CEEEEeCCCCh-----------hhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999987421 2222222 345567899999998763332223446666655
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.4e-05 Score=74.59 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=73.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||.|.+|.++|..|+.+..+.++.++|+++++.+.... ++.....-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhcchhccCceEEecCCChhh-hcCCC
Confidence 6999999999999999999876556699999999544332111 111000000 1122333234555 99999
Q ss_pred EEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|+++-.-|..+ |.+ +. +.+-+++..++|.++.+.+.+++ -|.|..+.-.
T Consensus 72 iVvitAG~prKp---Gmt-R~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ty 126 (313)
T COG0039 72 IVVITAGVPRKP---GMT-RLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDILTY 126 (313)
T ss_pred EEEEeCCCCCCC---CCC-HHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHHHH
Confidence 999999766544 111 22 23455666677777766333333 4788777544
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.6e-05 Score=75.86 Aligned_cols=100 Identities=13% Similarity=0.066 Sum_probs=70.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..+....+..+|.+||+++++.+.+.+.. ++. .-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~~-g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SDY-EVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hhh-CCcEEEeCCHHHHhccCCE
Confidence 479999999999998877766544679999999999988776421 000 0135678899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. |=+ . ...+++|+.|...++..|+.
T Consensus 196 VitaT~s~~----------P~~----~-----~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 196 LVTTTPSRK----------PVV----K-----ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred EEEecCCCC----------cEe----c-----HHHcCCCCEEEecCCCCccc
Confidence 999987531 111 0 23568899887655554443
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=5e-05 Score=76.35 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=56.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..++..+....+..+|++|++++++.+++.+.. ++ ....+....++++++.+||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999987665333689999999999988876521 00 00135667888888999999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|++.+
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98887643
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=72.88 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (480)
+||+|||+|.+|.++|..++.. |. ++.++|+++++.+..... +..... .. .+.+. +++++ .+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~D--------l~~~~~-~~-~~~~i~~~~~~-~~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMD--------LSHAVP-FT-SPTKIYAGDYS-DCKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHH--------HHhhcc-cc-CCeEEEeCCHH-HhCC
Confidence 4899999999999999999987 65 899999998876554421 111000 00 12232 45555 4999
Q ss_pred CCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||+||++...|..+. .++. .+...+++..+.+.++.+.+ +|++- |.|..+.
T Consensus 74 adivIitag~~~k~g---~~R~dll~~N~~i~~~i~~~i~~~~~~~-~vivv-sNP~d~~ 128 (315)
T PRK00066 74 ADLVVITAGAPQKPG---ETRLDLVEKNLKIFKSIVGEVMASGFDG-IFLVA-SNPVDIL 128 (315)
T ss_pred CCEEEEecCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEc-cCcHHHH
Confidence 999999987765431 1111 12233455566666665544 44332 4565553
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=78.17 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=71.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+..- |.+|++||+.... .+ .... ..++++.++.||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 4899999999999999999887 9999999964211 00 0011 2468888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..+ + ......+. -++....+++++++|+.|=.+.=..+.+.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999884221 0 01111111 13455678999999997654443345566666653
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00013 Score=73.41 Aligned_cols=103 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. ... ..++++.++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 4799999999999999988765 8999999874310 00 001 2367888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. +...+. -+.....++++.++|+.+=...=..+.+.+.|++.
T Consensus 201 v~l~~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTE-----------TTQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCCh-----------HHhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998421 112121 13345668999999986644333345566677653
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.5e-05 Score=64.15 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=47.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. +++++. ++|++++... | .++.++... ...++.+++|+++.+..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~----g------~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV----G------KDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT----T------SBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc----c------chhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999984 488855 5787752110 1 111111100 112456789999988899
Q ss_pred CEEEEEc
Q 011650 80 NIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|++|-+.
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.5e-05 Score=75.42 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=55.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD-ISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|+||| .|.||.|||.+|.++ |++|++|+ +++ +++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT~----------------------------------~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRTR----------------------------------DLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCCC----------------------------------CHHHHHhcC
Confidence 4799999 999999999999998 99999995 321 345668899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|++.|.. +.+ ..+++|++||+.++
T Consensus 203 DIVIsavg~~~~--------------v~~------~~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKG------DWIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cch------heecCCCEEEEcCC
Confidence 999999986521 122 12789999998654
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=72.53 Aligned_cols=102 Identities=8% Similarity=0.097 Sum_probs=69.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+... .. ... ..++++.++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 3799999999999999998765 899999998521 00 001 1367888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.. ++..+. -++....++++.++|+.+=.+.=..+.+.+.|++.
T Consensus 201 v~l~lPlt~-----------~T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTE-----------HTRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCCh-----------HHhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999998422 112121 13345678999999986643333345566677653
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.1e-05 Score=72.68 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|+|+ |.||..++..+.+. +++++.+ +|+++++.... . . ..+..++|+++.+++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~-~------~------------~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ-G------A------------LGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc-C------C------------CCccccCCHHHhccC
Confidence 689999998 99999999888764 4788665 88887654322 0 0 124456788887778
Q ss_pred CCEEEEEcc
Q 011650 79 ANIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998874
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.3e-05 Score=75.57 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE--ecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
||||.|||+|.+|.+.|..|+.+ | ++|++.||+.++++++.... ..+.- -.+.+ ...+.+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~~v~~------------~~vD~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGGKVEA------------LQVDAADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhcccccee------------EEecccChHHHHHHH
Confidence 79999999999999999999998 6 89999999999999886531 11100 00111 12345567
Q ss_pred hcCCEEEEEccCC
Q 011650 77 REANIVFVSVNTP 89 (480)
Q Consensus 77 ~~aDvVii~Vptp 89 (480)
++.|+||-|.|-+
T Consensus 67 ~~~d~VIn~~p~~ 79 (389)
T COG1748 67 KDFDLVINAAPPF 79 (389)
T ss_pred hcCCEEEEeCCch
Confidence 8899999999854
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=71.99 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=48.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeCC-HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDIS-VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~-~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|+| +|.||..++..+... +++++.+ +|+. ++...+ ...++.. .....+.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 68999999 699999999999875 5888765 6743 322100 0000000 00113567788887545
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
.+|+||.|+++
T Consensus 68 ~~DvVIdfT~p 78 (266)
T TIGR00036 68 DPDVLIDFTTP 78 (266)
T ss_pred CCCEEEECCCh
Confidence 68999999753
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0025 Score=64.60 Aligned_cols=229 Identities=14% Similarity=0.142 Sum_probs=136.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEE---EecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.+|-|+|.|.++.-+|..|.+.+ ..+|=.+.|...+-+. ++++...+ +.+.+.-..+...|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~-~v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLF-EVSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEE-EEeecchhhhhhcCeEEhhHhhcCHH
Confidence 678999999999999999999872 3468788887655544 44421111 11111111112234443 345777
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh-hCCC-CcEEEEecCCCcccHHHHHHHHHhhcCCCceE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD-VSKS-DKIVVEKSTVPVKTAEAIEKILMHNSRGINFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-|.+|+|||+.. -.+++++|.. .++. .++|.+++|. |+...++..+.+.+. +..
T Consensus 79 ~i~g~WdtlILavtaDA---------------Y~~VL~ql~~~~L~~vk~iVLvSPtf--GS~~lv~~~l~~~~~--~~E 139 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADA---------------YLDVLQQLPWEVLKRVKSIVLVSPTF--GSHLLVKGFLNDLGP--DAE 139 (429)
T ss_pred HhcccccEEEEEechHH---------------HHHHHHhcCHHHHhhCCEEEEECccc--chHHHHHHHHHhcCC--Cce
Confidence 76678899999998631 2456666543 2222 4677776676 343445556665542 222
Q ss_pred Ee-e----CCcccccC----ccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH------
Q 011650 152 IL-S----NPEFLAEG----TAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK------ 216 (480)
Q Consensus 152 v~-~----~Pe~~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|+ + +-.+...+ +++.... -.++.+|+... +.....++..+++.++- ......++-.||.--
T Consensus 140 VISFStY~gdTr~~d~~~~~~vlt~~v-K~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVH 215 (429)
T PF10100_consen 140 VISFSTYYGDTRWSDGEQPNRVLTTAV-KKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVH 215 (429)
T ss_pred EEEeecccccceeccCCCcceehhhhh-hceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecC
Confidence 11 1 22222111 1111111 23678887643 45678899999998753 233445677777411
Q ss_pred --HHHH----------------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 217 --LAAN----------------------------AFLAQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 217 --l~~N----------------------------~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+..| ....-+.....|++.+..++|++.-.+++.++-+
T Consensus 216 pplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 216 PPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred ChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 1111 3334567788999999999999999999999976
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=73.08 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=53.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|...+ +++|+++|+++++.+.+.+... ......++..+++..+|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG----------------GNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC----------------CeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998751 4789999999998877664210 111112345666789999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=72.08 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=68.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe---cCHHHHhh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS---TDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (480)
|||+|||+ |.+|.++|..|+.+.-..++.++|++ +. +|.. + ++........++.+ +|+.+.++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a----~g~a------l-DL~~~~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NT----PGVA------A-DLSHINTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--cc----ceee------h-HhHhCCCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999877212589999998 21 1210 0 11000011235532 23445599
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+||+||++...|..+. .+ +. +.+.+++..+.|.++.+ +.+|++ -|.|..+.
T Consensus 68 daDivvitaG~~~k~g---~t-R~dll~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvDv~ 123 (310)
T cd01337 68 GADVVVIPAGVPRKPG---MT-RDDLFNINAGIVRDLATAVAKACP-KALILI-ISNPVNST 123 (310)
T ss_pred CCCEEEEeCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchhhH
Confidence 9999999998775431 11 22 23445566666666644 444443 46777663
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=71.43 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=46.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..++..+.+. ++.++.++ +++. ..+...+. + .....+++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~~-~~~~~~~~------------~----~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPEH-SIDAVRRA------------L----GEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcCC-CHHHHhhh------------h----ccCCeeeCCHHHhccCC
Confidence 79999999999999999998874 46666543 3322 11111110 0 01245678887753468
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|++|.|+
T Consensus 63 DvVve~t~~ 71 (265)
T PRK13303 63 DLVVECAGH 71 (265)
T ss_pred CEEEECCCH
Confidence 999999875
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=8e-05 Score=73.02 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=56.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||. |.||.|||..|.++ |+.|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999998 9999998310 235677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.|.. +.. ..+++|++||+.|+.
T Consensus 204 IVI~avg~~~~--------------v~~------~~ik~GavVIDvgin 232 (284)
T PRK14179 204 ILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGMN 232 (284)
T ss_pred EEEEecCcccc--------------CCH------HHccCCcEEEEecce
Confidence 99999987632 111 237899999986643
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00026 Score=71.28 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=70.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
+||+|||+ |.+|.++|..|+.. |. ++.++|++++. .+.... ++..... ....+.+++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~--------Dl~~~~~-~~~~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAM--------ELEDCAF-PLLAEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeeh--------hhhhccc-cccCceEEecC
Confidence 59999999 99999999999876 44 79999996432 221111 0100000 00012344444
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
..+.+++||+||++-..|.... .+ +.| .+.+++..+.|.++.+++.+++.- |.|....-
T Consensus 72 ~~~~~~daDivvitaG~~~k~g---~t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~t 135 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPG---ME-RADLLKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTNA 135 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCC---Cc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHHH
Confidence 4455999999999987765431 11 122 344566677777777545555443 46665543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00021 Score=70.26 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=68.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+.... .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~~--------------~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQR--------------YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhh--------------cCceEEechhhhcccCccE
Confidence 4699999999999999999988 89999999999888776642100 0112222211122457999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||-|+|..... ..+-..+ -...++++.+|++.++.|+.|
T Consensus 182 vInatp~gm~~-------~~~~~~~------~~~~l~~~~~v~D~~y~p~~T 220 (270)
T TIGR00507 182 IINATSAGMSG-------NIDEPPV------PAEKLKEGMVVYDMVYNPGET 220 (270)
T ss_pred EEECCCCCCCC-------CCCCCCC------CHHHcCCCCEEEEeccCCCCC
Confidence 99998864221 0100000 013467888999999998877
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=71.40 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=70.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-----EVAVVDISVP--RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+||+|||+ |.+|.++|..|+...--- ++.++|++++ +++.... ++....... ..+.+++++..
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~-~~~~~i~~~~y 75 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPL-LAGVVITDDPN 75 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhh-cCCcEEecChH
Confidence 68999998 999999999888651112 7999999643 2221110 111111000 11234455544
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|... +.+ +. +.+.+++..+.|.++.+++.+++.- |.|....-.
T Consensus 76 ~~~~daDiVVitaG~~~k~---g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 138 (326)
T PRK05442 76 VAFKDADVALLVGARPRGP---GME-RKDLLEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTNAL 138 (326)
T ss_pred HHhCCCCEEEEeCCCCCCC---CCc-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHHHH
Confidence 5699999999998765433 111 22 2244566667777777556666553 467665443
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00027 Score=65.94 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=50.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|++||||.+|..+...+.+.-.++ -|.+||++.+++..+.+.. +.+.++++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999999988776420124 4788999999988776531 1123478888789999
Q ss_pred EEEEEc
Q 011650 81 IVFVSV 86 (480)
Q Consensus 81 vVii~V 86 (480)
+++.|-
T Consensus 63 lvVEaA 68 (255)
T COG1712 63 LVVEAA 68 (255)
T ss_pred eeeeeC
Confidence 999995
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00055 Score=61.38 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=57.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|.|.+|..+|..|... |.+|+++|+||-+.-+... .+++.. +.++++..+|+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~-------------------dGf~v~-~~~~a~~~adi 81 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAM-------------------DGFEVM-TLEEALRDADI 81 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHH-------------------TT-EEE--HHHHTTT-SE
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhh-------------------cCcEec-CHHHHHhhCCE
Confidence 4789999999999999999998 9999999999965432221 234443 57888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
+|.++....- . -.+..+.++++.++.+.+..+..
T Consensus 82 ~vtaTG~~~v---------i--------~~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 82 FVTATGNKDV---------I--------TGEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp EEE-SSSSSS---------B---------HHHHHHS-TTEEEEESSSSTTS
T ss_pred EEECCCCccc---------c--------CHHHHHHhcCCeEEeccCcCcee
Confidence 9988764210 1 12334558889988775555433
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=65.87 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=75.7
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
...+.+++|+|+|+ .+-+..+++.|..-|++|.+|||...+......+
T Consensus 31 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~---------------------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGY----------GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF---------------------- 78 (178)
T ss_dssp BS-STTSEEEEEST----------SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------------
T ss_pred ccccCCCEEEEEEE----------cCCcCeEeeeeecCCceeEEecccCChhhhcccc----------------------
Confidence 45789999999997 3579999999999999999999998876522221
Q ss_pred ceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ ...++++.++.+|+|+++.+- ++-+++--.+..+.|++..++|.+-+ ++|.+.+.
T Consensus 79 ~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~ 138 (178)
T PF02826_consen 79 GV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALL 138 (178)
T ss_dssp TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHH
T ss_pred cc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHH
Confidence 23 345899999999999999884 44555433455678888889999865 77876544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00033 Score=72.39 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=64.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+....... +..+ .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~-------------------G~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD-------------------GFRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc-------------------CCEe-CCHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765433321 1222 245667889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~ 130 (480)
+|.+++++ .++ ......++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99887642 122 23556788999998866443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=66.61 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=71.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHHHHH----cCCCCCCCCChHHHHHHhcCCCEE
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--PRINAWN----SDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~~l~----~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
.||+|||+ |.+|.++|..|... +. ++.++|+++ ++.+... ....+. ..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~-------------~~~~~ 68 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL-------------LAGVV 68 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHHHhhccccc-------------cCCcE
Confidence 58999998 99999999999876 53 899999964 2222211 111010 01233
Q ss_pred EecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 68 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++..+.+++||+||++-..|... +.+ +.| .+.+++..+.|.++.+++.+++.- |.|....-.
T Consensus 69 i~~~~~~~~~daDvVVitAG~~~k~---g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t~ 137 (323)
T TIGR01759 69 ATTDPEEAFKDVDAALLVGAFPRKP---GME-RADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNAL 137 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCC---CCc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHHH
Confidence 4344345599999999998876433 111 222 345667777788877755555543 477665433
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0004 Score=60.41 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=63.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.+||+| -|..+|..|++. |++|+++|++++.++..++....... +.+ +..+++ .-+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 899899999998 99999999999999887764322110 111 233433 3689999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV 124 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi 124 (480)
|.-+=|.|. +...+..++..+..+-+|.
T Consensus 81 iysirpp~e---------------l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPRD---------------LQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCHH---------------HHHHHHHHHHHcCCCEEEE
Confidence 999987541 3445566666666544443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=65.98 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=74.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+++|+. .....+++.|.++|++|.+||+.-...+... ..+.+.++
T Consensus 2 ~~Ig~IGlG----------~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~----------------------~~g~~~~~ 49 (163)
T PF03446_consen 2 MKIGFIGLG----------NMGSAMARNLAKAGYEVTVYDRSPEKAEALA----------------------EAGAEVAD 49 (163)
T ss_dssp BEEEEE--S----------HHHHHHHHHHHHTTTEEEEEESSHHHHHHHH----------------------HTTEEEES
T ss_pred CEEEEEchH----------HHHHHHHHHHHhcCCeEEeeccchhhhhhhH----------------------Hhhhhhhh
Confidence 489999973 5899999999999999999997543322111 13478899
Q ss_pred ChhhhcccCcEEEEeecCcc-cccccHHH--HHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLDYQK--IYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~~~~--~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
|+.++++++|+|++++.+++ .++. +.. +...+.+..+|+|+..+-+. +.+.+.|+.|..-.
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhHhhcccceEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 99999999999999998843 3331 112 66667677799999998864 34456788886543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=70.73 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..++...+-.+|.+|++++++.+++.+... . ....+. .++.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999753223579999999999888765210 0 001122 4778888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+.|+|++. | + +. ..+++|+.|...++..|+..+
T Consensus 192 VitaT~s~~----------P----l---~~---~~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 192 VVTATTSRT----------P----V---YP---EAARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred EEEccCCCC----------c----e---eC---ccCCCCCEEEecCCCCCCccc
Confidence 999987642 1 1 11 135789988766666565543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=74.08 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=63.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||.|.+|..+|..+... |.+|+++|+++.+....... +.. ..+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~-~~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQ-VVTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Cce-eccHHHHHhcCCE
Confidence 4799999999999999999887 89999999988765332211 122 2356778899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|++|+.++- -. -......++++.++++.+-.
T Consensus 313 VI~atGt~~---------iI--------~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKD---------II--------TLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCccc---------cc--------CHHHHhccCCCcEEEEcCCC
Confidence 999975431 01 12445668899999885533
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00039 Score=70.32 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=68.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+... .+ ....+...+++++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQ-----------SK-FNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------Hh-cCCcEEEeCCHHHHHhcCCE
Confidence 4799999999999888777643223589999999999887764210 00 01124556888888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+|++ + | .+. ..+++|+.|+...+..|+..
T Consensus 196 Vi~aT~s~-~---------p-------~i~---~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 196 IVTVTNAK-T---------P-------VFS---EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred EEEccCCC-C---------c-------chH---HhcCCCcEEEecCCCCcccc
Confidence 99998764 1 1 111 35688998865544444443
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00046 Score=71.73 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=64.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... +..+ .+++++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999987 89999999998775433321 1222 356777889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv 129 (480)
||.|+.++ .++ ......++++.++++.+..
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 99987542 122 2456678899988876544
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00055 Score=65.42 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=38.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+|.|||+|.+|.++|..|.+. ||+|+++|.+++++++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 7999999999999999999998 9999999999999988443
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00059 Score=69.11 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=51.4
Q ss_pred CceEEEECCChhH-HHHHHHHHHcCCC-Ce-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVG-GPTMAVIALKCPS-IE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~La~~~~G-~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++||||||+|.++ ...+..+... ++ .+ |-++|+++++.+++.+.. +--...+|+++.++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~-~~~~~~vav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 64 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL-GGGLELVAVVDRDPERAEAFAEEF-----------------GIAKAYTDLEELLA 64 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC-CCceEEEEEecCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 4799999999554 5577777775 12 23 556799999988776521 11146778888776
Q ss_pred c--CCEEEEEccCCCC
Q 011650 78 E--ANIVFVSVNTPTK 91 (480)
Q Consensus 78 ~--aDvVii~Vptp~~ 91 (480)
+ .|+|+||+|+..+
T Consensus 65 ~~~iD~V~Iatp~~~H 80 (342)
T COG0673 65 DPDIDAVYIATPNALH 80 (342)
T ss_pred CCCCCEEEEcCCChhh
Confidence 4 6999999987543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00047 Score=70.90 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=68.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|||+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.+.++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999987 889999999999887765421 00000 00001234556789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
||.|++.|... .+-+ +.+.....++++.+|++-+.-+.|..
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 99998543211 1211 12333355788898888775554543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00059 Score=70.73 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=64.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+....- | ... .+.++++..+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~------------------G-~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME------------------G-YEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc------------------C-CEE-ccHHHHHcCCCE
Confidence 3799999999999999998887 88999999999887665531 1 222 234566789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||.|++++. ..-+.....++++.++++.+.
T Consensus 261 VI~atG~~~-----------------~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNKD-----------------IITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCHH-----------------HHHHHHHhcCCCCcEEEEeCC
Confidence 999976431 112334667888888877653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=67.00 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=48.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|.. .+..+... ++.+++ ++|+++++..+ .. +...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~~-----------------~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---DW-----------------PTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---hC-----------------CCCceeCCHHHHhcCC
Confidence 58999999999974 55656553 578876 58998876531 10 12345678888775
Q ss_pred cCCEEEEEccCCC
Q 011650 78 EANIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 64 ~vD~V~I~tp~~~ 76 (346)
T PRK11579 64 NIDLIVIPTPNDT 76 (346)
T ss_pred CCCEEEEcCCcHH
Confidence 5799999988753
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0003 Score=70.75 Aligned_cols=104 Identities=19% Similarity=0.283 Sum_probs=79.5
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-.-.+++.|..-|.+|.+|||+.+.+... ...
T Consensus 138 ~el~gkTvGIiG~G----------~IG~~va~~l~afgm~v~~~d~~~~~~~~~-----------------------~~~ 184 (324)
T COG0111 138 TELAGKTVGIIGLG----------RIGRAVAKRLKAFGMKVIGYDPYSPRERAG-----------------------VDG 184 (324)
T ss_pred ccccCCEEEEECCC----------HHHHHHHHHHHhCCCeEEEECCCCchhhhc-----------------------ccc
Confidence 35689999999983 478899999999999999999988765211 123
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....++++.++.||.|+++++- ++-+++--.+....|++..++|.+-+ +.|.+.+-
T Consensus 185 ~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~ 244 (324)
T COG0111 185 VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALL 244 (324)
T ss_pred ceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHH
Confidence 44457899999999999999987 66666433444578988888888855 67765444
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00036 Score=61.14 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=54.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCC--EEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKN--LFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~--l~~t~d~~~a~~~ 78 (480)
.++.|||+|-+|..++..|+.. |.+ |++++|+.++.+++.+.. .... ....++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---------------~~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---------------GGVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---------------TGCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---------------CccccceeeHHHHHHHHhh
Confidence 4799999999999999999998 765 999999999998887521 0011 2334566666889
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||.|+|.+
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998865
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0006 Score=69.34 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=56.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|+|+|.||..++..+..+ +++++.+ .|.+++..+.+.+. ..+.+.+ ..+.........+.+..++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 78999999999999999988865 6788776 57676666554431 1222111 0000000011346777788887789
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999864
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=65.92 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=71.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++.-.+=.+|.+|++++++.+++.+.. ++.....+...+++++++.+||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~------------~~~~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF------------SKEFGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 469999999999999988887544468999999999988876421 00001246778899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. |=+ . ...+++|+.|....+..|+.
T Consensus 186 V~taT~s~~----------P~~----~-----~~~l~pg~hV~aiGs~~p~~ 218 (301)
T PRK06407 186 ITSITNSDT----------PIF----N-----RKYLGDEYHVNLAGSNYPNR 218 (301)
T ss_pred EEEecCCCC----------cEe----c-----HHHcCCCceEEecCCCCCCc
Confidence 999987531 111 1 13567888776544444444
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00034 Score=60.04 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=57.7
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhcC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVREA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (480)
||+|+| .|.+|..++..|... +++++..+ +++.++-+.+......+.. .. ...++ .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHLKG-----EV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccccc-----cc------ccccccCChh--hcCC
Confidence 689999 599999999888874 47888876 6554332222211100000 00 00111 2222 2589
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|+||+|+|... ..+.+..+.+.+.+|++||++|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999998532 233333445567889999988754
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00017 Score=74.37 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=64.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE------EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA------VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~------~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
++|+|||+|.+|...|.+|... |++|+ ++|.+....+.+.+. ++.+ .+++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999999887 89988 445444333333221 2333 467888
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++.||+|++.+|... -..+.+.+.++++++.++..+-
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecC
Confidence 999999999987421 1345588999999999887643
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=66.28 Aligned_cols=66 Identities=15% Similarity=0.390 Sum_probs=47.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|+||..++..+... ++.++++ +|+++ +++. .+ . ....+.|..+.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6899999999999999888765 6889886 69985 4322 11 1 112234555667789
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 62 DVViIctPs~ 71 (324)
T TIGR01921 62 DVLILCMGSA 71 (324)
T ss_pred CEEEEcCCCc
Confidence 9999998864
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00067 Score=77.51 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCe-------------EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-------------VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~-------------V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|+||+|||+|.||.+.|..|++. ++.+ |++.|+++++.+++.++.. +. ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~---------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NA---------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CC---------ceEE
Confidence 46899999999999999999975 4555 9999999999888776421 00 0122
Q ss_pred E-ecCHHHH---hhcCCEEEEEccCCC
Q 011650 68 F-STDVEKH---VREANIVFVSVNTPT 90 (480)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~Vptp~ 90 (480)
. .+|.++. ++++|+|++|+|+..
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchh
Confidence 2 3455443 357999999999754
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=62.08 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=55.5
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhhcC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVREA 79 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~a 79 (480)
||+||| .|++|..+...|+++ |.+++.. +.++++.-..+....... .+ ...+.+.+ +.++ +.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~---------~~~~~~~~~~~~~-~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KG---------FEDLSVEDADPEE-LSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TT---------TEEEBEEETSGHH-HTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--cc---------ccceeEeecchhH-hhcC
Confidence 799999 999999999999985 6777554 555441222222211000 00 01233444 5444 7999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|+||.|+|+. ...+.... .++.+..||+.|+
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAPK---LLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHHH---HHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHHH---HhhCCcEEEeCCH
Confidence 9999998741 11222222 3457888888764
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00068 Score=68.15 Aligned_cols=117 Identities=22% Similarity=0.240 Sum_probs=65.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH---HHHh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV---EKHV 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~a~ 76 (480)
|+||+|||+ |.+|..+|..|+......++.++|++...-+.+ . +. .....-.+..++|. .+++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~-----D-----l~---~~~~~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA-----D-----LS---HIDTPAKVTGYADGELWEKAL 74 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc-----c-----hh---hcCcCceEEEecCCCchHHHh
Confidence 679999999 999999999998552246899999932111100 0 00 00001124433331 4569
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++...|.... .+ ..| .+.+++..+.+.++ .+..+| ..+|.|....-.
T Consensus 75 ~gaDvVVitaG~~~~~~---~t-R~dll~~N~~i~~~i~~~i~~~-~~~~iv-iv~SNPvdv~~~ 133 (321)
T PTZ00325 75 RGADLVLICAGVPRKPG---MT-RDDLFNTNAPIVRDLVAAVASS-APKAIV-GIVSNPVNSTVP 133 (321)
T ss_pred CCCCEEEECCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHH-CCCeEE-EEecCcHHHHHH
Confidence 99999999998765431 01 111 11233334444444 234444 447777766443
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=68.64 Aligned_cols=121 Identities=14% Similarity=0.195 Sum_probs=73.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALK-------CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-------~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
-||+|||+ |.+|..+|..|+.. .--.++.++|+++++.+...-. +........ .+++++++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~~-~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPLL-REVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 38999999 99999999999864 1123799999999887654421 111110011 2355444444
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.+++||+||++-..|... + .+ +.| .+.+++..+.|.++..++.+|++- |.|..+.-.
T Consensus 172 e~~kdaDiVVitAG~prkp-G--~t-R~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~ 234 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGP-G--ME-RADLLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL 234 (444)
T ss_pred HHhCcCCEEEECCCCCCCC-C--CC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence 5599999999998776543 1 11 222 334555666666644445555443 467665443
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00065 Score=70.96 Aligned_cols=87 Identities=18% Similarity=0.102 Sum_probs=63.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH-HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA-WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+... ...| +.+ .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999876 8999999999876433 2222 222 24667788999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.|.++.. -+.......++++.++++.+-
T Consensus 312 VVI~tTGt~~-----------------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGNKD-----------------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCCcc-----------------chHHHHHhcCCCCCEEEEcCC
Confidence 9998765431 012445567899999988664
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=66.07 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=71.2
Q ss_pred eEEEECC-ChhHHHHHHHHHHcC-CCC----eEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKC-PSI----EVAVV--DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~-~G~----~V~~~--D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..++... .+. .+.++ |+++++.+..... +........ .+++++++..+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y~ 116 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPYE 116 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCHH
Confidence 8999999 999999999998762 111 23344 8888776654421 111110011 23554444445
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
.+++||+||++-..|..+. .+ +. +.+.+++..+.|.++.+++.+|+.- |.|..+.-
T Consensus 117 ~~kdaDIVVitAG~prkpg---~t-R~dll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t 177 (387)
T TIGR01757 117 VFEDADWALLIGAKPRGPG---ME-RADLLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNA 177 (387)
T ss_pred HhCCCCEEEECCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHH
Confidence 5999999999987765431 11 22 2344566666777766566655543 46766543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00086 Score=67.37 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=72.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+.. ++ ..-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~------------~~-~~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA------------QA-LGFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-cCCcEEEECCHHHHhcCCCE
Confidence 469999999999999998887655578999999999988776421 00 01235668899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++.. | +.. .+.+++|+.|...++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999986531 1 111 13577899887655555554
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0013 Score=65.95 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=67.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE--ecCHHHHh
Q 011650 2 VKICCIGA-GYVGGPTMAVIAL-KCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF--STDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (480)
|||+|||+ |.+|..+|..+.. ...+++++++|+++.. .+. ..+.... ..-.++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~--------~~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIP--------TAVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCC--------CCceEEEeCCCCHHHHc
Confidence 89999999 9999999988854 2225799999997542 111 0110000 0012222 35655668
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+++|+||+|...+.... .+ +.| .+.+++..+.+.++. ++.+|+ .+|.|..+.-.
T Consensus 68 ~~~DiVIitaG~~~~~~---~~-R~dll~~N~~i~~~ii~~i~~~~-~~~ivi-vvsNP~D~~t~ 126 (312)
T PRK05086 68 EGADVVLISAGVARKPG---MD-RSDLFNVNAGIVKNLVEKVAKTC-PKACIG-IITNPVNTTVA 126 (312)
T ss_pred CCCCEEEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccCchHHHHH
Confidence 99999999998765331 00 112 113344445555553 344444 46788766443
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0027 Score=63.58 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=76.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|+|+|.+|..+|.+|..- | .++.| .+++.+-+...+- . .. ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~------------------~-~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY------------------Y-AE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh------------------c-cc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 55555 4444333322210 0 01 246677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe 157 (480)
+|++|.|-. .++..+ +=+.+..+++++.++|+.+-......+.+.+.|++... |.|+ +.||
T Consensus 220 ~ivv~~pLt-----------~~T~~l--iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDV---f~~E 283 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KETRHL--INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDV---FEPE 283 (336)
T ss_pred EEEEecCCC-----------HHHHHH--hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccc---cCCC
Confidence 999998742 222222 33567888999999998665555555667777766422 5553 4555
Q ss_pred c
Q 011650 158 F 158 (480)
Q Consensus 158 ~ 158 (480)
-
T Consensus 284 P 284 (336)
T KOG0069|consen 284 P 284 (336)
T ss_pred C
Confidence 3
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0014 Score=65.97 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=63.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..|...+..++...+-.+|.+|++++++.+++.+.... ..-.+..++|+++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------------LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------------CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------------ccccceeccchhhhcccCCE
Confidence 36999999999999999988765556899999999998887652111 01357788999999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+|+... .|=+ -...+++|+.|...+...|+.
T Consensus 196 i~taT~s~~~--------~P~~---------~~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTP--------APVF---------DAEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSE--------EESB----------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCC--------Cccc---------cHHHcCCCcEEEEecCCCCch
Confidence 9999875420 0111 024678898887655555544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=65.95 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=68.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|...+..|+...+-.+|.+||+++++.+++.+... +...-.+...++++++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS------------SVVGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH------------hhcCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999998854223478899999998887764210 000112556778888776 999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. |=+ . .+.+++|+.|...++..|+.
T Consensus 197 Vv~aTps~~----------P~~----~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 197 LVTTTPSRK----------PVV----K-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred EEEecCCCC----------cEe----c-----HHHcCCCCEEEecCCCCCcc
Confidence 999988531 111 1 13567898886555555554
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00095 Score=69.81 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... | .+|++++++.++.+.+.+... .......+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~g----------------~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKELG----------------GEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHcC----------------CeEeeHHHHHHHHhhCC
Confidence 4799999999999999999987 7 789999999988776654110 01111235556688999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 243 vVi~aT~s~ 251 (417)
T TIGR01035 243 IVISSTGAP 251 (417)
T ss_pred EEEECCCCC
Confidence 999998765
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=66.60 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=67.7
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-e-c-CHHHHhhc
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-S-T-DVEKHVRE 78 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t-~-d~~~a~~~ 78 (480)
||+|||+ |.+|.++|..|+.+.-..++.++|+++ . .|.. .++.. ....-+++. + + ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a----~g~a----~DL~~---~~~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--A----AGVA----ADLSH---IPTAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--C----cEEE----chhhc---CCcCceEEEecCCCchHHHcCC
Confidence 7999999 999999999998872234899999986 1 1210 00100 000123443 2 2 33456999
Q ss_pred CCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||++...|.... .++ ..+.+.+++..+.|.++. ++.+|++ -|.|..+
T Consensus 68 aDivvitaG~~~~~g---~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKPG---MTRDDLFNVNAGIVKDLVAAVAESC-PKAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCCC---ccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEE-ecCchhh
Confidence 999999998765431 111 112344566666677764 4444433 4677765
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0018 Score=65.14 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=85.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
.++|||+|..+......+..-.+.-+|.+|+++++..+++.+.- .+. ....+..+++.++++++||+|
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l-----------~~~-~~~~v~a~~s~~~av~~aDiI 199 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL-----------RKR-GGEAVGAADSAEEAVEGADIV 199 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH-----------Hhh-cCccceeccCHHHHhhcCCEE
Confidence 58999999999999999988766678999999999998877421 000 001256788999999999999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+.|+|+.. |-+ -...+++|+.|...++-.|+-.+.-.+.+... +-.++..++..
T Consensus 200 vt~T~s~~----------Pil---------~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 200 VTATPSTE----------PVL---------KAEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEecCCCC----------Cee---------cHhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 99987632 222 12567899998776666666654333444443 12456666654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0008 Score=67.84 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=69.4
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|+++ ++.+.... ++...... .....+++++..+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~-~~~~~~i~~~~~~ 72 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFP-LLKGVVITTDPEE 72 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhccc-ccCCcEEecChHH
Confidence 8999999 9999999999987511 12599999987 43222111 11111000 0112344445556
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
++++||+||++-..|.... .++. .+.+.+++..+.|.++..++.+++.- |.|....
T Consensus 73 ~~~~aDiVVitAG~~~~~g---~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 73 AFKDVDVAILVGAFPRKPG---MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HhCCCCEEEEeCCCCCCcC---CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 7999999999987765431 1110 12334566667777775445555443 4666553
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00064 Score=63.73 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
.||+|+|+|.+|..+|..|++. |+ +++++|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999998 88 79999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0015 Score=66.01 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=70.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKC-----PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-----~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||+|+|+ |.+|..++..|+... .+.+|.++|+++.. +.+ .+.. .++..... ...++++.+.++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~~----~Dl~d~~~-~~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGVV----MELQDCAF-PLLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-ccee----eehhhccc-cccCCceecCCHHHH
Confidence 48999999 999999999998741 13589999997531 111 1110 01111000 001245556776667
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+++||+||++-.-|.... .++ ..+.+.+++..+.|.++.+++.++++-| .|...
T Consensus 76 l~~aDiVI~tAG~~~~~~---~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~ 133 (325)
T cd01336 76 FKDVDVAILVGAMPRKEG---MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANT 133 (325)
T ss_pred hCCCCEEEEeCCcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHH
Confidence 999999999987654321 111 1123344566677777765566555433 56544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=68.29 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=39.0
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVPRINAWNSDQL 47 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~ 47 (480)
|||.++|+|.+|.. ++..|.+. |++|+++|++++.++++++.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCC
Confidence 79999999999984 47788877 8999999999999999998654
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00094 Score=68.77 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|++|.+|||.....+....+ ++
T Consensus 189 ~L~gktVGIvG~G----------~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~----------------------g~ 236 (385)
T PRK07574 189 DLEGMTVGIVGAG----------RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL----------------------GL 236 (385)
T ss_pred ecCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc----------------------Cc
Confidence 4789999999973 578899999999999999999986433332221 24
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
++..++++.++.+|+|+++.+- ++-+++=-++..+.|++.+++|++-+ ++|.+.+.
T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 295 (385)
T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVV 295 (385)
T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHH
Confidence 5567899999999999999885 44444322466778988889999855 66765443
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=67.24 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=56.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|...+..++...+..+|.+|++++++.+++.+.... . ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-----------~-~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-----------E-LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-----------c-cCceEEEeCCHHHHHccCCE
Confidence 57999999999999888887532246899999999999887652100 0 00124557888888999999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
|+.|+|+.
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99998753
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=62.11 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=48.1
Q ss_pred ceEEEECCChhHHHHHHHHHHc-CCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALK-CPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
+||+|||+|+||..++..+.+. ..++++ .++++++++.+.+... ..+.+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 6899999999999999998763 123554 4578888777666532 3356677774 478
Q ss_pred CCEEEEEcc
Q 011650 79 ANIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+|+.|-+
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999953
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0017 Score=65.95 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=71.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+..-.+-.+|++|++++++.+++.+... +. .-.+..++++++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GP----------GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hc----------CCcEEEeCCHHHHHhcCCE
Confidence 3699999999999988777765445689999999999888765210 00 1236678899999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+.|+++... .| + ++ .+.+++|+.|....+..|+..
T Consensus 197 IvtaT~S~~~--------~P----v---l~--~~~lkpG~hV~aIGs~~p~~~ 232 (346)
T PRK07589 197 ITTVTADKTN--------AT----I---LT--DDMVEPGMHINAVGGDCPGKT 232 (346)
T ss_pred EEEecCCCCC--------Cc----e---ec--HHHcCCCcEEEecCCCCCCcc
Confidence 9999864310 01 1 11 145788988765555555543
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0015 Score=70.42 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|...|.+|.+|||+.+.+.. ..+ ++
T Consensus 135 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g~ 181 (525)
T TIGR01327 135 ELYGKTLGVIGLG----------RIGSIVAKRAKAFGMKVLAYDPYISPERA-EQL----------------------GV 181 (525)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------CC
Confidence 5689999999973 47889999999999999999998654332 211 23
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+.+++++.++.+|+|+++.+.. +.+++=-.+..+.|++.+++|++-+ ++|.+.+.
T Consensus 182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~ 240 (525)
T TIGR01327 182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALY 240 (525)
T ss_pred EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHH
Confidence 45568999999999999999874 5555322455678988889999865 77765543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=66.17 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=46.5
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.++.. .+..+....++.+|. ++|+++++. +..+. -+...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~-----------------~~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPI-----------------YSHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHh-----------------cCCCcccCCHHHHhcC
Confidence 679999999997652 334343322357776 589987654 22221 022345678888775
Q ss_pred -cCCEEEEEccCCC
Q 011650 78 -EANIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 63 ~~iD~V~I~tp~~~ 76 (344)
T PRK10206 63 PDVKLVVVCTHADS 76 (344)
T ss_pred CCCCEEEEeCCchH
Confidence 6799999998653
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0007 Score=71.47 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=52.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~a 79 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...++.. +..+-...++++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999998 9999999999999998865 2111110 111111122333 5789
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+|+|++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999864
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=67.74 Aligned_cols=33 Identities=33% Similarity=0.718 Sum_probs=27.1
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||||+|||+ |++|..++..|.++ ++++++.+-.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEC
Confidence 679999996 99999999999875 6788766433
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00065 Score=62.16 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=63.0
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
|.|+|. |.+|..++..|.++ |++|+++-|++++.+. ..+ ..+.. +.+.-.+++.++++++|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789996 99999999999998 8999999999998877 221 11100 0010012345668899999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
|.|++.+.. |....+..++.+... ....+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999975421 334444444444432 34455655543
|
... |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=66.74 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|.+|.+|||.....+.... .++
T Consensus 196 ~L~gktVGIVG~G----------~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~----------------------~g~ 243 (386)
T PLN03139 196 DLEGKTVGTVGAG----------RIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE----------------------TGA 243 (386)
T ss_pred CCCCCEEEEEeec----------HHHHHHHHHHHHCCCEEEEECCCCcchhhHhh----------------------cCc
Confidence 5789999999963 47889999999999999999997533322221 124
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..++++.++.+|+|+++.+. ++.+++=-.++.+.|++..++|++-+ ++|.+.+.
T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~ 302 (386)
T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVA 302 (386)
T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHH
Confidence 4556899999999999999885 55555322457788998889999854 77766554
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0027 Score=63.39 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhcCCEEEE
Q 011650 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVREANIVFV 84 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (480)
|||+|.+|.++|..|+.+.-.-++.++|+++++.+..... +..... ....+.+++ .+++ .+++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD--------LQHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 6999999999999998773234799999988765543321 000000 001123333 4554 5999999999
Q ss_pred EccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 85 SVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 85 ~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+...|..+ +.+ +. +...+++..+.|.++.+ +.+|++ -|.|..+.
T Consensus 71 tag~~rk~---g~~-R~dll~~N~~i~~~~~~~i~~~~p-~~~viv-vsNP~d~~ 119 (299)
T TIGR01771 71 TAGAPQKP---GET-RLELVGRNVRIMKSIVPEVVKSGF-DGIFLV-ATNPVDIL 119 (299)
T ss_pred CCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-eCCHHHHH
Confidence 98876543 111 11 22345566666776644 444443 24666543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=67.23 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=56.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhc
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|||+|+|+ |++|..++..|.++ |++++. +++.....-+.+.+-. +.+... ..+.+. .+.++.+.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~~------~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRGL------VDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----cccccc------CCceeecCCHHHhhcC
Confidence 69999998 99999999999975 788888 4465542222222100 000000 011222 244554468
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+|+... .+....+ +..|..||+.|+
T Consensus 69 ~DvVf~alP~~~s---------------~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGVS---------------AELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchHH---------------HHHHHHH---HhCCCEEEeCCh
Confidence 9999999986321 2222222 245788888775
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0048 Score=64.42 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=53.7
Q ss_pred ceEEEECCChhHHH-HHHHHHHc---CCCCeEEEEeCC-HHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGP-TMAVIALK---CPSIEVAVVDIS-VPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~---~~G~~V~~~D~~-~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||.|..-.+ +...|++. .++-+|+++|+| +++.+.+.+- ...++++. ..-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 79999999987443 33444442 245789999999 7887653320 11112211 12357889999999
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+.+||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999998643
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=64.10 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=66.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE---EecCHHHHhh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF---FSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~---~t~d~~~a~~ 77 (480)
.||+|||+ |.+|..+|..|+.+....++.++|+++. .+.. -++......-.+. -++|+.++++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~------~g~a-------~Dl~~~~~~~~i~~~~~~~d~~~~l~ 85 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT------PGVA-------ADVSHINTPAQVRGFLGDDQLGDALK 85 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC------CeeE-------chhhhCCcCceEEEEeCCCCHHHHcC
Confidence 48999999 9999999999997622358999999871 1100 0000000001232 2344566799
Q ss_pred cCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+||++...|..+. .++ ..+...+++..+.+.++. ++.+|+ .+|.|..+
T Consensus 86 ~aDiVVitAG~~~~~g---~~R~dll~~N~~i~~~i~~~i~~~~-p~aivi-vvSNPvD~ 140 (323)
T PLN00106 86 GADLVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEAVAKHC-PNALVN-IISNPVNS 140 (323)
T ss_pred CCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE-EeCCCccc
Confidence 9999999987765421 011 112233445555555555 344443 35677653
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=65.73 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=77.2
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+ .+-+..+++.|..-|++|.+|||....+... .++ .|. +........
T Consensus 155 ~~l~gktvGIiG~----------G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-~~~-------~~~---~~~~~~~~~ 213 (347)
T PLN02928 155 DTLFGKTVFILGY----------GAIGIELAKRLRPFGVKLLATRRSWTSEPED-GLL-------IPN---GDVDDLVDE 213 (347)
T ss_pred cCCCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCChhhhh-hhc-------ccc---ccccccccc
Confidence 4678999999997 3578899999999999999999975432211 000 000 000000000
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....++++.++.||+|+++++. ++-+++=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~ 273 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVL 273 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 01235899999999999999886 44455433566788998889999844 77876554
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.003 Score=66.24 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+... .......+..+++.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~g----------------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEFG----------------GEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHcC----------------CcEeeHHHHHHHhccCC
Confidence 4799999999999999999887 76 89999999998876654210 01111234556678999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 245 vVI~aT~s~ 253 (423)
T PRK00045 245 IVISSTGAP 253 (423)
T ss_pred EEEECCCCC
Confidence 999998865
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0026 Score=57.75 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=52.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+ |.+|..++.-..++ ||+|+.+-||++++.... +.. +.+.++ +.. +...+.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~~-~~~-i~q~Di-----------fd~-~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAARQ-GVT-ILQKDI-----------FDL-TSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhccccc-cce-eecccc-----------cCh-hhhHhhhcCCc
Confidence 89999995 99999999999988 999999999999986642 211 111111 111 12234588999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-+....
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.001 Score=71.14 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=54.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+|.||..++..|... |. +|++++++.++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 4799999999999999999987 75 79999999999988875210 000 00112245566789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0032 Score=63.51 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=68.4
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||+|||+ |.+|..+|..|+...- .+++.++|+++.. .+.... . +....... ...+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---D-----l~d~~~~~-~~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---E-----LMDCAFPL-LDGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---e-----hhcccchh-cCceeccCChHH
Confidence 6999999 9999999999987410 1269999996542 211110 0 11000000 022344445445
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
++++||+||++-..|... + .++ ..+.+.+++..+.|.++..++.+|+. -|.|.....
T Consensus 72 ~~~~aDiVVitAG~~~~~-~--~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv~t 132 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKE-G--MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANTNA 132 (324)
T ss_pred HhCCCCEEEEcCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHHH
Confidence 699999999998776432 1 111 11233456666777777545555544 346766543
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0031 Score=66.98 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=68.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-C--------H
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-D--------V 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d--------~ 72 (480)
.|+.|+|+|.+|...+..+... |..|+++|+++++.+..++-.....+.+..+- .....+-.+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~-g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEE-GGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEecccccc-ccccccceeecCHHHHHHHHHHH
Confidence 3799999999999988888777 88899999999998877752221111111000 000001111111 1 2
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
.+.++++|+||.|+--|-.. .| .-+.++..+.+++|.+|++-|.-+.|
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 23367899999998221100 11 11244556778999999987654433
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0034 Score=63.67 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=75.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|.+|.+|||...... ...+ ++
T Consensus 147 ~L~gktvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------~~ 193 (333)
T PRK13243 147 DVYGKTIGIIGFG----------RIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL----------------------GA 193 (333)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc----------------------CC
Confidence 4689999999973 5788999999999999999999765432 1111 12
Q ss_pred EEecChhhhcccCcEEEEeecCcc-ccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE-FKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ .++++.++.+|+|+++++..+ -++ ++ .+..+.|++.+++|++-+ ++|.+.+.
T Consensus 194 ~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~-~~~~~~mk~ga~lIN~aRg~~vd~~aL~ 251 (333)
T PRK13243 194 EY-RPLEELLRESDFVSLHVPLTKETYHMIN-EERLKLMKPTAILVNTARGKVVDTKALV 251 (333)
T ss_pred Ee-cCHHHHHhhCCEEEEeCCCChHHhhccC-HHHHhcCCCCeEEEECcCchhcCHHHHH
Confidence 23 478999999999999998743 333 44 456778988889999855 66765544
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0038 Score=63.00 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=75.1
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM-GDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-...+++.|. .-|.+|.+|||....+.. ..+ +
T Consensus 142 ~L~gktvGIiG~G----------~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~~~----------------------~ 188 (323)
T PRK15409 142 DVHHKTLGIVGMG----------RIGMALAQRAHFGFNMPILYNARRHHKEAE-ERF----------------------N 188 (323)
T ss_pred CCCCCEEEEEccc----------HHHHHHHHHHHhcCCCEEEEECCCCchhhH-Hhc----------------------C
Confidence 4689999999973 57888999997 789999999998654321 111 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+++ .++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 189 ~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~ 247 (323)
T PRK15409 189 ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALI 247 (323)
T ss_pred cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 333 4899999999999999887 44444322345678998889999854 77865544
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0039 Score=63.10 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=56.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+++|||+|.+|...+..|+... + .+|++|++++++.+++.+... .+ ....+...+++++++.+||
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997532 4 579999999999888764210 00 0012455688888899999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999998753
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=61.35 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=64.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||.|.-|.+-|.+|.++ |.+|++==+... ..++..+ .++.+ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 4899999999999999999998 999775333221 1222222 23443 35788899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH-HHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv 129 (480)
+|++-+|.-.+ .++.+ .|.+.|++|+.+......
T Consensus 77 vim~L~PDe~q---------------~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 77 VVMILLPDEQQ---------------KEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred EEEEeCchhhH---------------HHHHHHHhhhhhcCCceEEecccc
Confidence 99999875322 34555 899999999987665443
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0038 Score=62.69 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|..-|.+|.+|||...... ..+
T Consensus 142 ~L~gktvGIiG~----------G~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------------------~~~ 185 (311)
T PRK08410 142 EIKGKKWGIIGL----------GTIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------------------EEY 185 (311)
T ss_pred ccCCCEEEEECC----------CHHHHHHHHHHhhcCCEEEEECCCccccc--------------------------cCc
Confidence 468999999997 35688999999999999999999643211 112
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+ .++++.++.+|+|+++.+. ++-+++=-++..+.|++.+++|.+-+ ++|.+.+-
T Consensus 186 ~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~ 243 (311)
T PRK08410 186 ER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLA 243 (311)
T ss_pred ee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 22 4799999999999999987 55555433455678998889998755 77875543
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0027 Score=58.34 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=50.0
Q ss_pred eEEEECCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhh
Q 011650 3 KICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~ 77 (480)
||+|||.|..-.+.-. .+... .++.++.++|+|+++.+...+- .+.++++ ...-++..|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 8999999988777432 22221 2455899999999998865430 1122222 12235788999999999
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999974
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0062 Score=60.36 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=53.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|.+|.+++..|+.. |. +|+++||+.++.+.+.+... .......+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~-----------~~~~~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELN-----------ARFPAARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHH-----------hhCCCeEEEeccchHhhhCCCC
Confidence 3799999999999999999988 76 79999999999988764210 0000001222234444578899
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999998754
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=66.66 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=59.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-E-ecCHHHHhh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-F-STDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~-t~d~~~a~~ 77 (480)
+|||+|+|. |++|.-+...|..+ |+++|+.+..+.+.-+.+......+. .+... + ..+.++ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 469999996 99999999999887 78899998875443222221110000 01111 1 112222 68
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
++|+||+|+|.. +...+.+.+..+..||+.|+-
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 899999999742 234444444567888887753
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0047 Score=62.68 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=52.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCC-CCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.||+|||+ .+|...+..+.+. + ++++.+ +|+++++.+++.+.. ++...+|+++.+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~ 63 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDI 63 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCC
Confidence 48999999 6798888888875 3 577664 799999988877521 123567889988889
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|++++++||.
T Consensus 64 Di~~V~ipt~ 73 (343)
T TIGR01761 64 DIACVVVRSA 73 (343)
T ss_pred CEEEEEeCCC
Confidence 9999999863
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=62.04 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=53.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|..++..|+.. | .+|++++|+.++.+++.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 3689999999999999999988 7 79999999999988876521000 01222113334578899
Q ss_pred EEEEEccCCC
Q 011650 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|...
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999988754
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0068 Score=62.23 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=73.8
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+ .+-.-.+++.|..-|.+|.+|||...... .
T Consensus 111 g~~L~gktvGIIG~----------G~IG~~vA~~l~a~G~~V~~~dp~~~~~~--------------------------~ 154 (378)
T PRK15438 111 GFSLHDRTVGIVGV----------GNVGRRLQARLEALGIKTLLCDPPRADRG--------------------------D 154 (378)
T ss_pred CCCcCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 34679999999997 35788999999999999999999543210 0
Q ss_pred ceEEecChhhhcccCcEEEEeecCcc------cccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDE------FKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~------~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.. ...++++.++.||+|+++++... +.=++- +..+.|++.+++|++-+ ++|.+.+.
T Consensus 155 ~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVDe~AL~ 218 (378)
T PRK15438 155 EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE-KLIRSLKPGAILINACRGAVVDNTALL 218 (378)
T ss_pred cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH-HHHhcCCCCcEEEECCCchhcCHHHHH
Confidence 01 13478999999999999988632 222454 55677888889999865 88876554
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0042 Score=66.96 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|...|.+|.+|||+.+.+.. ..+ ++
T Consensus 137 ~l~gktvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g~ 183 (526)
T PRK13581 137 ELYGKTLGIIGL----------GRIGSEVAKRAKAFGMKVIAYDPYISPERA-AQL----------------------GV 183 (526)
T ss_pred ccCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------CC
Confidence 467999999997 357889999999999999999998654322 111 23
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
++. ++++.++.+|+|+++.+.. +-+++=-.+..+.|++.+++|++-+ ++|.+.+.
T Consensus 184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~ 241 (526)
T PRK13581 184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALA 241 (526)
T ss_pred EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHH
Confidence 444 7999999999999999984 5555322466788988889999865 67765543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=63.55 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-+..+++.|...|.+|.+|||...... . .+
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~------------------------~~ 186 (330)
T PRK12480 143 PVKNMTVAIIGTG----------RIGAATAKIYAGFGATITAYDAYPNKDL--D------------------------FL 186 (330)
T ss_pred ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEEeCChhHhh--h------------------------hh
Confidence 3578899999974 4788999999999999999999754321 0 12
Q ss_pred EEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..+++++++++|+|+++.+... .+.+--..+...|++..++|++-+ ++|.+.+.
T Consensus 187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~ 245 (330)
T PRK12480 187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLI 245 (330)
T ss_pred hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHH
Confidence 244688999999999999999854 333333567788988889999844 66765443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0052 Score=60.94 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCC
Q 011650 308 TRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
+..+..+.+..+..+.+++|+|+|+. .-+..+++.|...|++|.++|...........++
T Consensus 135 e~ai~~al~~~~~~l~gk~v~IiG~G----------~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g---------- 194 (287)
T TIGR02853 135 EGAIMMAIEHTDFTIHGSNVMVLGFG----------RTGMTIARTFSALGARVFVGARSSADLARITEMG---------- 194 (287)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEcCh----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC----------
Confidence 33344444444447789999999974 3789999999999999999998643321111111
Q ss_pred CCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC---CCChHHHhhcCcEEE
Q 011650 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN---ILDVEKLRKIGFIVY 463 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~---~~~~~~~~~~g~~y~ 463 (480)
...+. ..++.+.++++|.|+..+++.-+ + ....+.|++..+|+|.-. -.|-+..++.|.+.+
T Consensus 195 ---------~~~~~-~~~l~~~l~~aDiVint~P~~ii---~-~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~ 259 (287)
T TIGR02853 195 ---------LIPFP-LNKLEEKVAEIDIVINTIPALVL---T-ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKAL 259 (287)
T ss_pred ---------Ceeec-HHHHHHHhccCCEEEECCChHHh---C-HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEE
Confidence 01111 23567788999999999987642 3 345567777789999865 334567778887764
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0062 Score=60.10 Aligned_cols=90 Identities=21% Similarity=0.270 Sum_probs=56.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHH-HHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRIN-AWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~-~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.+|.-++..+.+. ++.++. ++|+++++.. +..+. .+.-...++.++.++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~-----------------~Gi~~~~~~~e~ll~~~ 63 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARARE-----------------LGVKTSAEGVDGLLANP 63 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHH-----------------CCCCEEECCHHHHhcCC
Confidence 6899999999999887777753 467766 4788876532 12210 011123456666554
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+.|+|++|+|+..+. +.....+..|+.|++++
T Consensus 64 dIDaV~iaTp~~~H~------------------e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 64 DIDIVFDATSAKAHA------------------RHARLLAELGKIVIDLT 95 (285)
T ss_pred CCCEEEECCCcHHHH------------------HHHHHHHHcCCEEEECC
Confidence 679999998865321 22223345678887765
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0048 Score=65.64 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=50.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999988887764210 00000112222 568999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99998753
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0046 Score=60.87 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=79.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCCh-hHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.||+++||. .....++..|.++|++|.+||.-..+ .+.... .+....
T Consensus 1 ~kIafIGLG----------~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----------------------~Ga~~a 48 (286)
T COG2084 1 MKIAFIGLG----------IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----------------------AGATVA 48 (286)
T ss_pred CeEEEEcCc----------hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----------------------cCCccc
Confidence 378999983 58999999999999999999987665 333322 245677
Q ss_pred cChhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEE
Q 011650 404 SDAYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVY 463 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~ 463 (480)
.++.++++++|+||++..-+. .++. ....+.+.+++..++||...+=+. +.+++.|+.|.
T Consensus 49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 899999999999999987754 2221 123566667778899999887653 34446677774
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0053 Score=61.64 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=51.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|++|..++..|.++ ||+|++++|+.++...+......+. .+.+.-..++.++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999998 9999999999876554432111111 011211234556788999
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-++..
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0039 Score=61.34 Aligned_cols=71 Identities=23% Similarity=0.387 Sum_probs=54.8
Q ss_pred ceEEEECCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|.+ |.|+|..|.++ |..|++++.. |.|+.+.++.||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999999887 99999999988 8999986431 235566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++++|-. +. ...++++++||+.+
T Consensus 204 IVV~avG~~~~--------------i~------~~~ik~gavVIDVG 230 (285)
T PRK14189 204 IVVAAVGKRNV--------------LT------ADMVKPGATVIDVG 230 (285)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999997621 11 15688999998744
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0089 Score=60.21 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=76.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++.+++++|+|+ ..-...+++.|..-|.+|.+|||.-.++ ....+ +
T Consensus 142 ~~l~gktvGIiG~----------GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~~----------------------~ 188 (324)
T COG1052 142 FDLRGKTLGIIGL----------GRIGQAVARRLKGFGMKVLYYDRSPNPE-AEKEL----------------------G 188 (324)
T ss_pred cCCCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCCChH-HHhhc----------------------C
Confidence 4788999999997 3578899999998899999999987632 22221 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+|.+ +++.++.+|.|+++.+- ++-+++-=.+..+.|++..++|.+-+ +.|.+.+-
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi 247 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALI 247 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 45666 99999999999999876 55555333455678888888888755 77865444
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0015 Score=67.56 Aligned_cols=124 Identities=12% Similarity=0.140 Sum_probs=69.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCC--CCCCCCChHHHHHHhcCCCEEEe--cCHHHHhhc
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQ--LPIYEPGLEEVVKQCRGKNLFFS--TDVEKHVRE 78 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~--~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
|.|+|+|.+|..++..|++.. .+ +|++.|++.++.+++.+.. ..+.- -.+.+. .++++.+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~------------~~~d~~~~~~l~~~~~~ 67 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEA------------VQVDVNDPESLAELLRG 67 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEE------------EE--TTTHHHHHHHHTT
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeE------------EEEecCCHHHHHHHHhc
Confidence 789999999999999999872 35 8999999999999887521 11100 000111 124456789
Q ss_pred CCEEEEEccCCCCcCCC-----CCCCCCchHHHHHHHHHHHhhC-CCCcEEEEecCCCcccHHHHHHH
Q 011650 79 ANIVFVSVNTPTKTQGL-----GAGKAADLTYWESAARMIADVS-KSDKIVVEKSTVPVKTAEAIEKI 140 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~-----~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~~ 140 (480)
+|+||-|+|......-. .+-...|.+++......+.+.. +.+..++......||.+..+...
T Consensus 68 ~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~ 135 (386)
T PF03435_consen 68 CDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARY 135 (386)
T ss_dssp SSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHH
T ss_pred CCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHH
Confidence 99999999743111000 0011334433333333333322 25777777778888888765443
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.071 Score=50.64 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=28.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 77 566689887
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0056 Score=61.16 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. +-...+++.|..-|++|.+|||....+.. .
T Consensus 119 ~L~gktvgIiG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~~---------------------------~ 161 (303)
T PRK06436 119 LLYNKSLGILGYG----------GIGRRVALLAKAFGMNIYAYTRSYVNDGI---------------------------S 161 (303)
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcccCc---------------------------c
Confidence 4689999999973 57888999998889999999997432110 0
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
....++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|++-+ +.|.+.+.
T Consensus 162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~ 220 (303)
T PRK06436 162 SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDML 220 (303)
T ss_pred cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1135789999999999999887 44444322556678888889999765 66765443
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0094 Score=50.29 Aligned_cols=70 Identities=19% Similarity=0.349 Sum_probs=49.6
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|.|+|.|.+|..++..|.+. +.+|+++|.++++++.+.+...++. ++.-.+.+++ .-+.+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~-------------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER-------------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH-------------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh-------------cCccccCE
Confidence 57999999999999999997 7799999999999999886432221 2221222211 12578999
Q ss_pred EEEEccC
Q 011650 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
++++++.
T Consensus 66 vv~~~~~ 72 (116)
T PF02254_consen 66 VVILTDD 72 (116)
T ss_dssp EEEESSS
T ss_pred EEEccCC
Confidence 9999763
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=58.40 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=80.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHH---hh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKH---VR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a---~~ 77 (480)
.+|+.||+|..|.+....++...++-.++++|++++.++..++.... ..++. .+++|. .|..+. ..
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999997655555555667899999999998876642100 11221 234442 233221 36
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc-CCCceEEeeCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS-RGINFQILSNP 156 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g~~~~v~~~P 156 (480)
+.|+||+.+=-.. |-..-..+++.+.+.+++|.+++..| .-|....+.+.+.... .|.+....+.|
T Consensus 195 ~FDlVF~~ALi~~-----------dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGM-----------DKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccc-----------ccccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 7899999852111 11112678999999999999998877 2344333434332221 14455556677
Q ss_pred c
Q 011650 157 E 157 (480)
Q Consensus 157 e 157 (480)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0036 Score=65.20 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=55.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||.|||+|-||..++..|+.. | .++++++|+.++.+.+.+... .+.....++..+.+..+|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999988 6 579999999999888775210 011222345556688999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 245 iVI~aT~a~ 253 (414)
T PRK13940 245 IIIAAVNVL 253 (414)
T ss_pred EEEECcCCC
Confidence 999999876
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=60.38 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. +-.-.+++.|..-|.+|.+|||...... .
T Consensus 111 g~~l~gktvGIIG~G----------~IG~~va~~l~a~G~~V~~~Dp~~~~~~--------------------------~ 154 (381)
T PRK00257 111 GVDLAERTYGVVGAG----------HVGGRLVRVLRGLGWKVLVCDPPRQEAE--------------------------G 154 (381)
T ss_pred CCCcCcCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence 346789999999973 4688899999999999999999532110 0
Q ss_pred ceEEecChhhhcccCcEEEEeecCc------ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWD------EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~------~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
... ..++++.++.||+|+++++.. .+.=++- +..+.|++.+++|++-+ ++|.+.+.
T Consensus 155 ~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVde~AL~ 218 (381)
T PRK00257 155 DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDE-AFLASLRPGAWLINASRGAVVDNQALR 218 (381)
T ss_pred Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCH-HHHhcCCCCeEEEECCCCcccCHHHHH
Confidence 011 247899999999999999973 2333554 45677888779999755 77766554
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0098 Score=63.03 Aligned_cols=122 Identities=13% Similarity=0.176 Sum_probs=84.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. ...-.++..|.++|++|.+||......+....... +.+ ..+..++
T Consensus 2 ~~IgvIGLG----------~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~--------------~~g--~~i~~~~ 55 (470)
T PTZ00142 2 SDIGLIGLA----------VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK--------------EGN--TRVKGYH 55 (470)
T ss_pred CEEEEEeEh----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh--------------hcC--CcceecC
Confidence 479999984 48899999999999999999985443221111000 000 1244567
Q ss_pred Chhhhcc---cCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCCccc
Q 011650 405 DAYEATK---DSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPLDKW 472 (480)
Q Consensus 405 ~~~~a~~---~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~~~~ 472 (480)
++.++++ .+|+|++++...+.-+--.+.+...+.+..+|||+.+.... +.+.+.|+.|.+.|.++-.|
T Consensus 56 s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 56 TLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred CHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 8888886 48999999777654332345677777766799999998753 34556799999998765444
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0043 Score=56.47 Aligned_cols=53 Identities=26% Similarity=0.527 Sum_probs=43.4
Q ss_pred ceEEEECCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||.|.| |.++|..|.++ |.+|++.+++.+ ++.+.+.+||
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99999999998 889999997521 2234588999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999999865
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0088 Score=61.64 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=57.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCC-CEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGK-NLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~a 79 (480)
.+++|||+|..+......++...+ -.+|.+|++++++.+++.+... +..... .+..+++.++++++|
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~-----------~~~~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVA-----------ETYPQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH-----------HhcCCCceEEEeCCHHHHHcCC
Confidence 469999999999999998887433 3589999999999888764210 000001 267789999999999
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+|+.|+++
T Consensus 225 DIVvtaT~s 233 (379)
T PRK06199 225 DIVTYCNSG 233 (379)
T ss_pred CEEEEccCC
Confidence 999999864
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.003 Score=69.28 Aligned_cols=73 Identities=14% Similarity=0.327 Sum_probs=54.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|.|.+|..++..|.++ |++|+++|.|+++++.+++...+.. +....+.+++ .-+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA-------------AGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh-------------cCCccC
Confidence 4689999999999999999988 9999999999999999886433322 2222222211 115689
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|.++++++++
T Consensus 466 ~~vv~~~~d~ 475 (601)
T PRK03659 466 EAIVITCNEP 475 (601)
T ss_pred CEEEEEeCCH
Confidence 9999998753
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.05 Score=52.44 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 64 KNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.++++++|++|+-+|-. . .. ..+++.+.+++++|.+|....|+|+-. +...+++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG--~------~t------~~Iikki~~~ipEgAII~~tCTIpt~~---ly~~le~ 189 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKG--G------MQ------PDIIEKFADDIKEGAIVTHACTIPTTK---FAKIFKD 189 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCCHHH---HHHHHHH
Confidence 35677777778899999999997632 1 11 456889999999999999888997654 4445554
Q ss_pred hcCCCceEE-eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 144 NSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.++ .|+.+ .|+|-- .||.. .+..+|. ...+++..+++.++-+...
T Consensus 190 l~R-~DvgIsS~HPaa-VPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~ 235 (342)
T PRK00961 190 LGR-DDLNVTSYHPGA-VPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR 235 (342)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC
Confidence 432 23332 367743 23321 1233442 2346889999999988765
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0053 Score=61.62 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=73.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|..-|++|.+|||...... .+ ...
T Consensus 133 ~l~g~tvgIvG~----------G~IG~~vA~~l~afG~~V~~~~~~~~~~~---~~---------------------~~~ 178 (312)
T PRK15469 133 HREDFTIGILGA----------GVLGSKVAQSLQTWGFPLRCWSRSRKSWP---GV---------------------QSF 178 (312)
T ss_pred CcCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEEeCCCCCCC---Cc---------------------eee
Confidence 578899999997 35788999999999999999998643211 00 001
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
....+++++++++|+|+++.+.. +-+++=-.+..+.|++.+++|++-+ ++|.+.+-
T Consensus 179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~ 237 (312)
T PRK15469 179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLL 237 (312)
T ss_pred cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHH
Confidence 11357899999999999998874 3334322456778988889999755 77766543
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.045 Score=52.83 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 64 KNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.++++++|++|+-+|-. . .. ...++.+.+++++|.+|....|+|+-. +..+++.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG--~------~q------~~Iikkii~~lpEgAII~~tCTIpt~~---ly~ilE~ 187 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKG--N------KQ------PDIIKKFIDDIPEGAIVTHACTIPTTK---FAKIFED 187 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCChHH---HHHHHHh
Confidence 45677787778899999999997632 1 11 356889999999999999888997654 3444444
Q ss_pred hcCCCceEE-eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 144 NSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.++ .|+.+ .|+|-- .||.. +...| +-+ ..+++..+++.++-+...
T Consensus 188 l~R-~DvgVsS~HPaa-VPgt~-----~q~Yi-~eg---yAtEEqI~klveL~~sa~ 233 (340)
T TIGR01723 188 LGR-EDLNVTSYHPGC-VPEMK-----GQVYI-AEG---YASEEAVNKLYELGKKAR 233 (340)
T ss_pred hCc-ccCCeeccCCCC-CCCCC-----CceEe-ecc---cCCHHHHHHHHHHHHHhC
Confidence 332 23333 367742 34432 11123 322 236889999999988765
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0086 Score=62.45 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=74.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-+..+++.|..-|.+|.+|||..... . ..+
T Consensus 148 ~L~gktvGIiG~----------G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~---------------------~~~ 191 (409)
T PRK11790 148 EVRGKTLGIVGY----------GHIGTQLSVLAESLGMRVYFYDIEDKLP-----L---------------------GNA 191 (409)
T ss_pred cCCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCCcccc-----c---------------------CCc
Confidence 578999999997 3568899999999999999999963210 0 123
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..++++.++.||+|+++.+. ++-+++--.+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~ 250 (409)
T PRK11790 192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALA 250 (409)
T ss_pred eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHH
Confidence 4556899999999999999887 44555433456678888889999854 77765443
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=60.61 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=55.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|+.|||+|-||.-.|.+|+.+ | .+|++.+|+.++...|.+... +....-+++.+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~~----------------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKLG----------------AEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHhC----------------CeeecHHHHHHhhhhCC
Confidence 3699999999999999999998 6 689999999999998876311 12222345556789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999998665
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0036 Score=62.46 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=45.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHH-hh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKH-VR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a-~~ 77 (480)
|+||+|+|. ||-|.-+...|+.+ |..++..+.-++.+=+.+.+- .|.+... -.++++. |.++. ..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~-----~p~l~g~------~~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDV-----HPNLRGL------VDLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHh-----Ccccccc------cccccccCChhhhhcc
Confidence 689999985 99999999999986 677877776544321222211 1111100 0122222 33332 45
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||+|+|.
T Consensus 70 ~~DvvFlalPh 80 (349)
T COG0002 70 ECDVVFLALPH 80 (349)
T ss_pred cCCEEEEecCc
Confidence 69999999985
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=61.32 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=76.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCeEEEECCCCChhHHH--hhhhcccCCCCCCCCCCCCCCCCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM-GDKARLSIYDPQVPQEHIQ--RDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+.+++|+|+|+. +-...+++.|. .-|.+|.+|||+...+... ..++ .++. +.....
T Consensus 162 ~L~gktvGIiG~G----------~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~-------~~~~~~ 221 (386)
T PLN02306 162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLK-------ANGEQP 221 (386)
T ss_pred CCCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccc-------cccccc
Confidence 4689999999973 47888999985 7899999999987532110 0110 0000 000000
Q ss_pred CceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
..+.+..++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~ 283 (386)
T PLN02306 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALV 283 (386)
T ss_pred ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 1123346899999999999998887 44444333455678998889999865 77866554
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0072 Score=60.28 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=67.2
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... .++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~----------------------~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA----------------------DGF 60 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH----------------------cCC
Confidence 468999999997 479999999999999999999754332222221 123
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.. .++.++++.||+|+++.+.++-+++=.+.+...|++.++++=.
T Consensus 61 ~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 61 EV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEEC
Confidence 33 3899999999999999987665544235677788766555433
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.008 Score=59.22 Aligned_cols=53 Identities=21% Similarity=0.422 Sum_probs=44.0
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||.|. +|.++|..|..+ |..|+.++... .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999988531 23455688999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999876
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0086 Score=60.71 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=71.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHH-HhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL-MGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L-~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. +-+..+++.| ...|.+|.+|||...... . ..
T Consensus 143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-----------------------~~ 187 (332)
T PRK08605 143 SIKDLKVAVIGTG----------RIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-----------------------TY 187 (332)
T ss_pred eeCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCccHhH--H-----------------------hh
Confidence 4678999999973 4778899998 567999999999865421 1 11
Q ss_pred eEEecChhhhcccCcEEEEeecCccccc-ccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKN-LDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+....+++++++++|+|+++++...... +--..+.+.|++..++||+.+ +.+.+
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~ 244 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK 244 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHH
Confidence 3345689999999999999988755332 222346778888889999865 44543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=62.81 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=82.7
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
-.+|+++||. .....+++.|.++|++|.+||.-....+...... ...+. ..+..+
T Consensus 6 ~~~IG~IGLG----------~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~--------------~~~Ga-~~~~~a 60 (493)
T PLN02350 6 LSRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERA--------------KKEGN-LPLYGF 60 (493)
T ss_pred CCCEEEEeeH----------HHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh--------------hhcCC-cccccC
Confidence 3579999985 4899999999999999999998655432211100 00000 113356
Q ss_pred cChhhhccc---CcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCC
Q 011650 404 SDAYEATKD---SHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKP 468 (480)
Q Consensus 404 ~~~~~a~~~---~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~ 468 (480)
.++.++++. +|+|+++...++--+--++.+...+.+..+|||+.+.... +.+++.|++|.+.|.+
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVS 134 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVS 134 (493)
T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCc
Confidence 788888876 9999999988763322224566667666699999999753 3455679999998764
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0092 Score=59.50 Aligned_cols=109 Identities=15% Similarity=0.244 Sum_probs=76.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+...+.
T Consensus 2 ~~Ig~IGlG~----------mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----------------------~g~~~~~ 49 (296)
T PRK15461 2 AAIAFIGLGQ----------MGSPMASNLLKQGHQLQVFDVNPQAVDALVD----------------------KGATPAA 49 (296)
T ss_pred CeEEEEeeCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------cCCcccC
Confidence 3799999754 8899999999999999999986443221111 1234567
Q ss_pred ChhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEe
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSI 465 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~i 465 (480)
++.++++++|+|+++++.+. .+.. ..+.+...+++..+|+|+..+.+. +.+.+.|+.|..-
T Consensus 50 s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 50 SPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred CHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence 88899999999999998874 3332 112344455556699999888764 2344568887543
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0075 Score=60.72 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=73.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ .+-...+++.|..-|.+|.+|||....+. .
T Consensus 145 ~l~gktvgIiG~----------G~IG~~vA~~l~~fgm~V~~~~~~~~~~~----------------------------~ 186 (317)
T PRK06487 145 ELEGKTLGLLGH----------GELGGAVARLAEAFGMRVLIGQLPGRPAR----------------------------P 186 (317)
T ss_pred ccCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCCccc----------------------------c
Confidence 357999999997 35788999999999999999998643211 1
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
. ..++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 187 ~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~ 244 (317)
T PRK06487 187 D-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALA 244 (317)
T ss_pred c-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 1 13789999999999999987 55555433455678888889999865 78866543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.038 Score=58.34 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=66.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+|.|.+|.++|..|++. |++|+++|++. +.++...+ ++ ... .-.+.......+...++|
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~-----------~l-~~~-~~~~~~~~~~~~~~~~~d 70 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALE-----------EL-GEL-GIELVLGEYPEEFLEGVD 70 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHH-----------HH-Hhc-CCEEEeCCcchhHhhcCC
Confidence 4799999999999999999998 99999999985 22221110 00 000 001222222223356799
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+||.+...+.+ ++. +..+-+ .+....+ ..+|.+..|..-.||.. +..+|+..+
T Consensus 71 ~vv~~~g~~~~--------~~~---~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 71 LVVVSPGVPLD--------SPP---VVQAHKKGIEVIGEVELAYRFSK-APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred EEEECCCCCCC--------CHH---HHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 99998653321 222 222211 1122223 56777767776666655 567776643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.021 Score=56.99 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=76.6
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+...+.+++|+|+|.. .-+..++..|.+.|++|.++|...........++ .
T Consensus 146 ~~~~l~g~kvlViG~G----------~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G---~---------------- 196 (296)
T PRK08306 146 TPITIHGSNVLVLGFG----------RTGMTLARTLKALGANVTVGARKSAHLARITEMG---L---------------- 196 (296)
T ss_pred CCCCCCCCEEEEECCc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---C----------------
Confidence 3456789999999964 3788999999999999999999854433222221 0
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEE
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYS 464 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~ 464 (480)
. ....+++.+.++++|.||..+++.. ++ +...+.|++..+|||.-.- .+-+..++.|+...+
T Consensus 197 ~-~~~~~~l~~~l~~aDiVI~t~p~~~---i~-~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~ 261 (296)
T PRK08306 197 S-PFHLSELAEEVGKIDIIFNTIPALV---LT-KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL 261 (296)
T ss_pred e-eecHHHHHHHhCCCCEEEECCChhh---hh-HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence 0 1112356778899999999887653 22 4556678877899998543 222345566777654
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0069 Score=55.09 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=64.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCC----h-------HHHHHHhcCCCEEEec
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPG----L-------EEVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~----l-------~~~~~~~~~~~l~~t~ 70 (480)
.||.|+|.|.+|..-+..+... |++|+.+|.++++.+++........+.. . .+..+. -.....
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 94 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEH----PESYES 94 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHH----CCHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHH----HHHhHH
Confidence 4899999999999988888887 9999999999998888775322111000 0 000000 000112
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
.+.+.++.+|+||.+.--+-.. .|- -+.++..+.++++.+|++-|
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~-------~P~-----lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKR-------APR-----LVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHHhhCcEEeeecccCCCC-------CCE-----EEEhHHhhccCCCceEEEEE
Confidence 3455678999999876543211 221 13345556688999999865
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=58.09 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=44.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHH--HHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRI--NAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (480)
+||||||+|.+|..++..+.+. ++.++. ++|++++.- +..++-+.+.. .+++++.+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es~gla~A~~~Gi~~~------------------~~~ie~LL~~ 65 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPESDGLARARRLGVATS------------------AEGIDGLLAM 65 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhhHHHHHHHHcCCCcc------------------cCCHHHHHhC
Confidence 4799999999999988877763 477766 578887642 22222222221 23444444
Q ss_pred ---hcCCEEEEEccCC
Q 011650 77 ---REANIVFVSVNTP 89 (480)
Q Consensus 77 ---~~aDvVii~Vptp 89 (480)
.+.|+||+|+|..
T Consensus 66 ~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 66 PEFDDIDIVFDATSAG 81 (302)
T ss_pred cCCCCCCEEEECCCHH
Confidence 4689999998753
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0091 Score=62.62 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=52.8
Q ss_pred ceEEEECCChhHHH--HHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGP--TMAVIALK---CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~---~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (480)
|||+|||.|.. .+ +...|+.. .++-+|+++|+|+++.+.+.+- ...+.++. ..-++..|+|.++|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eA 71 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEA 71 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHH
Confidence 89999999985 33 33334432 2467999999999888764420 01111111 12357899999999
Q ss_pred hhcCCEEEEEcc
Q 011650 76 VREANIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+++||+||.++-
T Consensus 72 l~gADfVi~~ir 83 (437)
T cd05298 72 FTDADFVFAQIR 83 (437)
T ss_pred hCCCCEEEEEee
Confidence 999999999975
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.064 Score=59.74 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=85.3
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC----c
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP----E 157 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (480)
||+|+|. +.+.+.++++.++++++++|++-+++.....+.+.+.+... ..-++..+| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~---~~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGAR---IGQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhcccc---CCeEEecCCcCcCc
Confidence 6889873 34678899999999999999987666544444444433321 111466666 5
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
.....++..++++...+++- +.+..++++++.++++++.++ ..+..++++ .-+++-++.-.-..+..++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVLC-ALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555667788877777664 434446788999999999985 466666664 45556666655555555555544
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=57.58 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|.+ +.-..+++..|.++|+.|.+++-.-
T Consensus 153 ~~i~l~Gk~V~vIG~s---------~ivG~PmA~~L~~~gatVtv~~~~t------------------------------ 193 (301)
T PRK14194 153 TCGDLTGKHAVVIGRS---------NIVGKPMAALLLQAHCSVTVVHSRS------------------------------ 193 (301)
T ss_pred hCCCCCCCEEEEECCC---------CccHHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 4457899999999964 2588999999999999999986421
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.+-.-+| +++..+|||.-
T Consensus 194 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 194 ------TDAKALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ------CCHHHHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 256778899999999999998755333 45557999986
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.022 Score=60.73 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=65.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCE-EEecCH-------
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNL-FFSTDV------- 72 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l-~~t~d~------- 72 (480)
||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-+..+. +..-++.. ..+-. ..+.+.
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHHH
Confidence 799999999999877777766 8899999999999988876322211 11000000 00000 011221
Q ss_pred -HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 73 -EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 -~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
.+.+.++|++|.|+..|... .|. ...++..+.++++.+|++.+.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~-------aP~-----lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKP-------APK-----LITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCccc-------Ccc-----hHHHHHHHhcCCCCEEEEEcc
Confidence 11135799999998765321 121 123555666788888877553
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.015 Score=60.82 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
.+|.|||+|.+|.++|..|.++ |++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 5799999999999999999988 9999999987654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=58.22 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=66.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .+....+
T Consensus 3 ~~IgviG~G~----------mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~ 50 (296)
T PRK11559 3 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----------------------AGAETAS 50 (296)
T ss_pred ceEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999744 7889999999999999999986543221111 1245567
Q ss_pred ChhhhcccCcEEEEeecCcc-ccccc--HHHHHhhcCCCCEEEEcCCCCCh
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLD--YQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
++.++++++|+|+++++-+. .+..- .+.+...+++..+|+|+......
T Consensus 51 ~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~ 101 (296)
T PRK11559 51 TAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL 101 (296)
T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHH
Confidence 88899999999999987543 22210 12345556666799999887753
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.023 Score=54.59 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=55.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---cCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN---SDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~---~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.||.|+|.|.+|.+.|..+..++...++.++|+++++.+.-. +...++. ...++..+.|+.. -++
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~-----------~~~~V~~~~Dy~~-sa~ 88 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFL-----------STPNVVASKDYSV-SAN 88 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccc-----------cCCceEecCcccc-cCC
Confidence 489999999999999988887633468999999988654211 1112221 2356777778764 789
Q ss_pred CCEEEEEccCCC
Q 011650 79 ANIVFVSVNTPT 90 (480)
Q Consensus 79 aDvVii~Vptp~ 90 (480)
++++|++.....
T Consensus 89 S~lvIiTAGarq 100 (332)
T KOG1495|consen 89 SKLVIITAGARQ 100 (332)
T ss_pred CcEEEEecCCCC
Confidence 999999987643
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.018 Score=53.52 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=51.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecC---HHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STD---VEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d---~~~a 75 (480)
+++.|+|. |.+|..++..|++. |++|++++++.++.+.+.+.... . ....+.. ..+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~~-----------~-~~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLRA-----------R-FGEGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHh-----------h-cCCcEEEeeCCCHHHHHHH
Confidence 57999995 99999999999998 89999999999888776542100 0 0011211 122 2356
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
++++|+||.|+|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0063 Score=66.22 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=51.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-C-CCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPI-Y-EPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~-~-e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|.|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++...+. + +...++.+++ .-++++|
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~-------------a~i~~a~ 483 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL-------------AHLDCAR 483 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh-------------cCccccC
Confidence 578999999999999999998 999999999999999988633221 1 2211111111 1146899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
.+++++++
T Consensus 484 ~viv~~~~ 491 (558)
T PRK10669 484 WLLLTIPN 491 (558)
T ss_pred EEEEEcCC
Confidence 99999864
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.012 Score=61.56 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=53.1
Q ss_pred ceEEEECCChh-HHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYV-GGPTMAVIALK---CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~---~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
|||+|||.|.. ...+...|++. .++.+|+++|+|+++.+.+.+- ...++++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 22233444432 2567999999999888764320 01111211 123578999999999
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999999753
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.018 Score=57.41 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=75.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.-..-+.... .+...+.+
T Consensus 2 ~Ig~IGlG----------~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~s 49 (299)
T PRK12490 2 KLGLIGLG----------KMGGNMAERLREDGHEVVGYDVNQEAVDVAGK----------------------LGITARHS 49 (299)
T ss_pred EEEEEccc----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 68999873 47889999999999999999986432211111 12455678
Q ss_pred hhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011650 406 AYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSI 465 (480)
Q Consensus 406 ~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
+++.++. +|+|+++++.+ .+++. ++.+...+++..+|||+.+.-... .+.+.|+.|..-
T Consensus 50 ~~~~~~~~~~advVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vda 118 (299)
T PRK12490 50 LEELVSKLEAPRTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDC 118 (299)
T ss_pred HHHHHHhCCCCCEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeC
Confidence 8887766 69999999998 54443 245666676666999998876632 334568888663
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=56.36 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=75.8
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|.+|.+||+.-...+.... .+....++
T Consensus 2 ~Ig~IGlG----------~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~~ 49 (301)
T PRK09599 2 QLGMIGLG----------RMGGNMARRLLRGGHEVVGYDRNPEAVEALAE----------------------EGATGADS 49 (301)
T ss_pred EEEEEccc----------HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence 68999973 48899999999999999999996433221111 23456677
Q ss_pred hhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 406 AYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 406 ~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
+.+.++. +|+|+++++.. ..++. ++.+...+++..+|||+.+.... +.+++.|+.|...+
T Consensus 50 ~~e~~~~~~~~dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 50 LEELVAKLPAPRVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHhhcCCCCEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 8877765 69999999887 43432 34566666666699999887653 34456688886653
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.019 Score=51.65 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=49.2
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-+ .+|.|+|..|.++ |..|+..+.. |.++++.++.||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~---------------------------------T~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSK---------------------------------TKNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TT---------------------------------SSSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCC---------------------------------CCcccceeeecc
Confidence 579999977 6999999999998 8999988753 235556688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|-.- . ...++++.+||+.++
T Consensus 82 IVVsa~G~~~~i--------------~------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 82 IVVSAVGKPNLI--------------K------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--C
T ss_pred EEeeeecccccc--------------c------cccccCCcEEEecCC
Confidence 999999865211 1 246789999987543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=58.91 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=71.9
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+++|+|+|+ .+-...+++.|..-|.+|.+||+....+ .. ..
T Consensus 145 l~gktvgIiG~----------G~IG~~va~~l~~fg~~V~~~~~~~~~~-~~--------------------------~~ 187 (314)
T PRK06932 145 VRGSTLGVFGK----------GCLGTEVGRLAQALGMKVLYAEHKGASV-CR--------------------------EG 187 (314)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCcccc-cc--------------------------cc
Confidence 57999999997 3578889999999999999999853211 00 01
Q ss_pred EecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 402 VASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
..++++.++.||+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 188 -~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~ 244 (314)
T PRK06932 188 -YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALL 244 (314)
T ss_pred -cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHH
Confidence 24789999999999999986 55555433455678888889999854 77876544
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=60.51 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred ceEEEECCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|..+.+--. .+.. ..++.++.++|+++++.+.+.. -.+.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~--------~~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAI--------LAKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHH--------HHHHHHHhhCCCeEEEEecCHHHHh
Confidence 57999999999887432 1221 1367899999999998874332 012233321 223578899999999
Q ss_pred hcCCEEEEEcc
Q 011650 77 REANIVFVSVN 87 (480)
Q Consensus 77 ~~aDvVii~Vp 87 (480)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999974
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.007 Score=55.47 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=32.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
||+|||+|.+|..+|..|++. |. +++++|.+.-....+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~R 41 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLNR 41 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchhc
Confidence 689999999999999999998 77 59999988633334443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0097 Score=60.40 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=43.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+|+|. |++|.-+...|+++ +|. +..+..+.+.-+.+.-+ + ..+.+.+.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~~~-------g----------~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELSFK-------G----------KELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeeeeC-------C----------ceeEEeeCCHHHH
Confidence 689999995 99999999999986 554 46665543221111100 0 1233332112235
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+||.|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 789999999874
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=56.41 Aligned_cols=76 Identities=17% Similarity=0.354 Sum_probs=53.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH------HHHHHcCC--CCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPR------INAWNSDQ--LPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~------v~~l~~g~--~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
|+|+|-|+ |++|+.+...|..+ ||.|.+.=|+++. +.++.... ..+.. ..+.-..+.
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~------------aDL~d~~sf 72 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFK------------ADLLDEGSF 72 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCcccceEEe------------ccccccchH
Confidence 68999985 99999999999999 9999999998876 23333211 11111 234445677
Q ss_pred HHHhhcCCEEEEEccCCCCc
Q 011650 73 EKHVREANIVFVSVNTPTKT 92 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~ 92 (480)
.+++.+||.||=+- +|.+.
T Consensus 73 ~~ai~gcdgVfH~A-sp~~~ 91 (327)
T KOG1502|consen 73 DKAIDGCDGVFHTA-SPVDF 91 (327)
T ss_pred HHHHhCCCEEEEeC-ccCCC
Confidence 88899999987553 45443
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.024 Score=56.56 Aligned_cols=111 Identities=13% Similarity=0.200 Sum_probs=75.5
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.++|.+|.+||......+..... +.....+
T Consensus 2 ~Ig~IGlG----------~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s 49 (298)
T TIGR00872 2 QLGLIGLG----------RMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED----------------------RTTGVAN 49 (298)
T ss_pred EEEEEcch----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----------------------CCcccCC
Confidence 68999973 478899999999999999999865432221111 1112234
Q ss_pred hhh---hcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCC
Q 011650 406 AYE---ATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSIGKPL 469 (480)
Q Consensus 406 ~~~---a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~ 469 (480)
+.+ +++.+|+|+++++....++. .+++...+++..+|||+.+..... .+.+.|+.|...+...
T Consensus 50 ~~~~~~~~~~~dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 50 LRELSQRLSAPRVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHhhcCCCCEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 444 45678999999999855543 356666666656999999886432 3346789998877543
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=64.16 Aligned_cols=72 Identities=10% Similarity=0.240 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.+|-|+|+|.+|..+|..|.++ |++++++|.|+++++.+++...+++ +..-.+.+++ .-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLES-------------AGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHh-------------cCCCcC
Confidence 3688999999999999999998 9999999999999999986433322 2222222211 114689
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|.+++|+++
T Consensus 466 ~~vvv~~~d 474 (621)
T PRK03562 466 EVLINAIDD 474 (621)
T ss_pred CEEEEEeCC
Confidence 999999864
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.044 Score=48.27 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=60.1
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++.++++++|.|+|-+. .-..+++..|.++|+.|.+.+-.-
T Consensus 22 ~~~~~~gk~v~VvGrs~---------~vG~pla~lL~~~gatV~~~~~~t------------------------------ 62 (140)
T cd05212 22 EGVRLDGKKVLVVGRSG---------IVGAPLQCLLQRDGATVYSCDWKT------------------------------ 62 (140)
T ss_pred cCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 45578999999999543 778899999999999999977421
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.++++.||.||.+|..+.+ ++.+.+ ++..+|+|.-
T Consensus 63 ------~~l~~~v~~ADIVvsAtg~~~~--i~~~~i----kpGa~Vidvg 100 (140)
T cd05212 63 ------IQLQSKVHDADVVVVGSPKPEK--VPTEWI----KPGATVINCS 100 (140)
T ss_pred ------cCHHHHHhhCCEEEEecCCCCc--cCHHHc----CCCCEEEEcC
Confidence 2467789999999999999965 454333 4455777754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.014 Score=59.21 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=34.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAW 42 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
||||.|.|+ |++|..++..|.++ .|++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHHHHHHh
Confidence 789999996 99999999999875 169999999987655444
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.041 Score=53.97 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=55.5
Q ss_pred eEEEECCChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH--hcCCCEEE-ecCHHH---H
Q 011650 3 KICCIGAGYVGGPTMAVIAL-KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ--CRGKNLFF-STDVEK---H 75 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~--~~~~~l~~-t~d~~~---a 75 (480)
||++||.|.+-++. ..|++ .+++..|.++|++++.++.-++ ++.. ....++++ +.|..+ .
T Consensus 123 rVaFIGSGPLPlT~-i~la~~~~~~~~v~~iD~d~~A~~~a~~------------lv~~~~~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 123 RVAFIGSGPLPLTS-IVLAKQHGPGARVHNIDIDPEANELARR------------LVASDLGLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp EEEEE---SS-HHH-HHHH--HTT--EEEEEESSHHHHHHHHH------------HHH---HH-SSEEEEES-GGGG-GG
T ss_pred eEEEEcCCCcchHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHH------------HHhhcccccCCeEEEecchhccccc
Confidence 89999999999974 44553 3345679999999998776543 1110 01234544 334322 2
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.++|+|+++---.. +-+.-.++++.+.+++++|+.|+.+|.-
T Consensus 190 l~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 190 LKEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp ----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 568899999954321 1122378899999999999999999754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=56.73 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=55.1
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||-|. +|.|+|..|..+ |..|++++.. |.++++.++.||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998742 235566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-. +. ..+++++++||+..
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDvG 231 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDVG 231 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEcc
Confidence 99999976521 11 15688999998744
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.03 Score=55.07 Aligned_cols=102 Identities=19% Similarity=0.336 Sum_probs=71.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-Ee---cCHHHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FS---TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t---~d~~~a~~~ 78 (480)
||+|||.|.+|+--|....-. |-+|+..|+|.+|+..+..- . .+++. .. .++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~------------f----~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDL------------F----GGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHh------------h----CceeEEEEcCHHHHHHHhhh
Confidence 799999999999977766555 89999999999988766531 0 12321 11 246677889
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|++|=+|-.|-.. .|- -+.++..+.+++|.+||+-.-=..|+.
T Consensus 232 aDlvIgaVLIpgak-------aPk-----Lvt~e~vk~MkpGsVivDVAiDqGGc~ 275 (371)
T COG0686 232 ADLVIGAVLIPGAK-------APK-----LVTREMVKQMKPGSVIVDVAIDQGGCF 275 (371)
T ss_pred ccEEEEEEEecCCC-------Cce-----ehhHHHHHhcCCCcEEEEEEEcCCCce
Confidence 99999888655322 333 357788888999999987543333443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.021 Score=56.72 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=69.8
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|.+|.+||+....-+.... .+....++
T Consensus 1 ~IgvIG~G~----------mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~~ 48 (291)
T TIGR01505 1 KVGFIGLGI----------MGSPMSINLAKAGYQLHVTTIGPEVADELLA----------------------AGAVTAET 48 (291)
T ss_pred CEEEEEecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCcccCC
Confidence 488999744 8899999999999999999986433221111 12234567
Q ss_pred hhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
+.++++++|+|+++++-+. .+.. ..+.+...+++..+|+|+....... .+++.|+.|..
T Consensus 49 ~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 49 ARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 8899999999999988642 2211 1123444556667899988766531 23345666654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0053 Score=61.41 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCC-CCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEEEEc
Q 011650 12 VGGPTMAVIALKCPSIEVAVVDISVPRINA----WNSDQLP-IYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVFVSV 86 (480)
Q Consensus 12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~g~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~V 86 (480)
||..+|..+..+ |++|++.|.|..-.+. +..+..+ ..-..+...-......+++-+.|..+ ++++|+++.+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 788999999998 9999999999765542 1111000 00000000000001124556677766 89999996555
Q ss_pred cCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCccc
Q 011650 87 NTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAI 165 (480)
Q Consensus 87 ptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~ 165 (480)
- -|++...+++.+|.+..++..+. .+.|+.+.+....-....+... |.+| ++|.+..+
T Consensus 78 ~-------------edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv-g~h~---fspa~~m~---- 136 (380)
T KOG1683|consen 78 F-------------EDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV-GMHF---FSPAHWMQ---- 136 (380)
T ss_pred h-------------hhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc-cccc---cCHHHHHH----
Confidence 3 36677789999999999998876 6667777654322111111111 2222 34432221
Q ss_pred cccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 011650 166 NDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVS 245 (480)
Q Consensus 166 ~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~ 245 (480)
+. .|+.+-. + +......+.+.-.... +-++.+.+. +.+..| .+.-.|++++.++-...|+|++
T Consensus 137 --Ll---Eii~~~~-t--S~~~iA~Ain~~~~~g-k~~vvVg~c-----~gf~v~---r~l~~y~~~~~~~l~e~g~~p~ 199 (380)
T KOG1683|consen 137 --LL---EIILALY-T--SKLTIATAINGGSPAG-KLPVVVGNC-----CGFRVN---RLLPPYTIGLNELLLEIGADPW 199 (380)
T ss_pred --HH---HHHHhcC-C--CchHHHHHHhcccccC-CccEEeccC-----CceEEE---ecccHHHHHHHHHHHHcCCCHH
Confidence 11 0111111 1 1223333333333322 122333321 222222 2335677888889999999999
Q ss_pred HHHHHhcCC
Q 011650 246 QVSHAIGFD 254 (480)
Q Consensus 246 ~v~~~~~~~ 254 (480)
.+....+.-
T Consensus 200 ~iD~~~t~f 208 (380)
T KOG1683|consen 200 LIDSLITKF 208 (380)
T ss_pred HHHHHHHhc
Confidence 999888753
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=56.76 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=72.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. ....+++.|.+.|++|.+||.....+.+ .. .+...+.+
T Consensus 2 ~Ig~IGlG~----------MG~~ma~~L~~~G~~v~v~~~~~~~~~~-~~----------------------~g~~~~~s 48 (292)
T PRK15059 2 KLGFIGLGI----------MGTPMAINLARAGHQLHVTTIGPVADEL-LS----------------------LGAVSVET 48 (292)
T ss_pred eEEEEccCH----------HHHHHHHHHHHCCCeEEEEeCCHhHHHH-HH----------------------cCCeecCC
Confidence 689999743 7889999999999999999865322221 11 12445678
Q ss_pred hhhhcccCcEEEEeecCcc-cccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
+.++++.+|+|++++..+. .++. ....+...+.+..+|+|+..+-+. +.+++.|..|..
T Consensus 49 ~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 49 ARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD 116 (292)
T ss_pred HHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 8898999999999999863 2221 111233334445699999887765 444566777755
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.03 Score=55.11 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=61.3
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|+|+|.| +.-..+++..|.++|+.|.++....
T Consensus 152 ~~i~l~Gk~v~vIG~S---------~ivG~Pla~lL~~~gatVtv~~s~t------------------------------ 192 (284)
T PRK14179 152 YNVELEGKHAVVIGRS---------NIVGKPMAQLLLDKNATVTLTHSRT------------------------------ 192 (284)
T ss_pred hCCCCCCCEEEEECCC---------CcCcHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 4456899999999963 3678899999999999999983211
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||+||.++..+.|-.-+| +++..+|||.-
T Consensus 193 ------~~l~~~~~~ADIVI~avg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 193 ------RNLAEVARKADILVVAIGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCccccCCHHH------ccCCcEEEEec
Confidence 256778899999999999999854332 45556999974
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=51.62 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=66.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+.+||+|+|.+|.-+|.++... |..|++||.-...- ...+ .++.+. +.++++..||+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~-~~~a-------------------~gvq~v-sl~Eil~~ADF 203 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMA-LAEA-------------------FGVQLV-SLEEILPKADF 203 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchH-HHHh-------------------ccceee-eHHHHHhhcCE
Confidence 3689999999999999998876 88899988632111 1111 123433 46778999998
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|-+=+|- .|+++.+.+ ..-...+++|.-||+.|-...=-+..+.+.++.
T Consensus 204 itlH~PL-----------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 204 ITLHVPL-----------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEccCC-----------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8776653 234443322 233445788999998774332223445555554
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.36 Score=47.82 Aligned_cols=228 Identities=13% Similarity=0.171 Sum_probs=130.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH----HcCCCCCCCCChHHHHHHhcCCCEE---EecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAW----NSDQLPIYEPGLEEVVKQCRGKNLF---FSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l----~~g~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (480)
|.++-++|+|.+..-+|..+..++ ..++-.+.+-..+-+.+ +.+. .++-.+-.+.- ....|+.. +-.|++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~-ql~l~~q~eah-r~leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTP-QLYLQGQGEAH-RQLEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCC-eEEEEeccHHH-HhhcCceehhHHHhhHH
Confidence 457899999999999999999873 45676777654443333 3321 12222222211 11234443 345677
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHH-hhCCC-CcEEEEecCCCcccHHHHHHHHHhhcCCCceE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-DVSKS-DKIVVEKSTVPVKTAEAIEKILMHNSRGINFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
++..+-+.+|+|||+.. -.+++++|- +.++. .++|.+++|...+. .+...+.+.+ .+..
T Consensus 81 ~~~~dwqtlilav~aDa---------------Y~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~~--~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPADA---------------YYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKAG--RDAE 141 (431)
T ss_pred HhhchhheEEEEeecHH---------------HHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhhC--CCce
Confidence 76778899999998631 245666653 23332 34566666764432 2333333333 2333
Q ss_pred EeeCC-----ccc----ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH------
Q 011650 152 ILSNP-----EFL----AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK------ 216 (480)
Q Consensus 152 v~~~P-----e~~----~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------ 216 (480)
|++-. .+. .|-++..... -.+|.+|+.-. +....+.+.+++...+- ....+.++..||.--
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkav-KkriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAV-KKRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHH-hHheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 33211 111 1112211111 12577886533 45678889999988653 344556777777521
Q ss_pred --HHH----------------------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 217 --LAA----------------------------NAFLAQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 217 --l~~----------------------------N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
++- -+...-+...+-|++++..++|+..-.+++.++.+
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 111 12333455678899999999999999999999876
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.022 Score=55.98 Aligned_cols=71 Identities=28% Similarity=0.395 Sum_probs=53.8
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||-| .+|.|+|..|.++ |..|++++.. |.++.+.++.||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999988 8999988532 223455688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-.- . ..++++|++|++.+
T Consensus 203 IvV~AvG~p~~i---------~-----------~~~vk~GavVIDvG 229 (285)
T PRK14191 203 IVCVGVGKPDLI---------K-----------ASMVKKGAVVVDIG 229 (285)
T ss_pred EEEEecCCCCcC---------C-----------HHHcCCCcEEEEee
Confidence 999999876311 1 23468899998743
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.07 Score=56.58 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|+|+|..|.++|..|.+. |++|+++|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5799999999999999999998 99999999875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=60.21 Aligned_cols=42 Identities=12% Similarity=0.266 Sum_probs=38.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 36899999999999999999998 9999999999999998875
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.089 Score=56.29 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=47.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|.|+|+|..|.+.+..|... |++|+++|.++.+.+.+.+.... +.......+.+.++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888887 99999999887666554431111 1111122234678998
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.+-.-|
T Consensus 74 VV~SpGi~ 81 (488)
T PRK03369 74 VVTSPGFR 81 (488)
T ss_pred EEECCCCC
Confidence 88875544
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.055 Score=51.75 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=67.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~----------~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
++|+|.|+|.+|..+|..|.+. |.+|+ +.|. |.+.+..+++..-.+.. . .+ .+..
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~--~--------~~-~~~~- 97 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG--F--------PG-AERI- 97 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc--C--------CC-ceec-
Confidence 5899999999999999999998 99998 5576 55555554432111100 0 00 0111
Q ss_pred CHHHHh-hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCc
Q 011650 71 DVEKHV-REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGIN 149 (480)
Q Consensus 71 d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~ 149 (480)
+.++.+ .+||+++-|.++.... ...+. .++ .-+|.++...|-| .+..+.|++.+
T Consensus 98 ~~~~i~~~~~Dvlip~a~~~~i~--------------~~~~~----~l~--a~~I~egAN~~~t-~~a~~~L~~rG---- 152 (227)
T cd01076 98 TNEELLELDCDILIPAALENQIT--------------ADNAD----RIK--AKIIVEAANGPTT-PEADEILHERG---- 152 (227)
T ss_pred CCccceeecccEEEecCccCccC--------------HHHHh----hce--eeEEEeCCCCCCC-HHHHHHHHHCC----
Confidence 112211 3899999998654321 11122 222 3344455444445 55667777764
Q ss_pred eEEeeCCcccc
Q 011650 150 FQILSNPEFLA 160 (480)
Q Consensus 150 ~~v~~~Pe~~~ 160 (480)
+.+.|.++.
T Consensus 153 --i~~~PD~~a 161 (227)
T cd01076 153 --VLVVPDILA 161 (227)
T ss_pred --CEEEChHHh
Confidence 467887753
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.042 Score=51.57 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=29.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.||...+..|.+. |++|++++.+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 4799999999999999999998 89999998653
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.02 Score=58.14 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=33.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|||+|.+|..+|..|++. |+ +++++|.+.-....|++
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~R 66 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQR 66 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccCc
Confidence 4799999999999999999998 87 89999998643333443
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.085 Score=50.53 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=81.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHH-HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVPRINA-WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+|++||.|+|...++..+...+ +..+++.+-.+...... ++. .+--.+.++ .++++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~------------------~g~~~~~~n-~~~~~~ 61 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA------------------LGVKTVFTN-LEVLQA 61 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc------------------CCceeeech-HHHHhh
Confidence 79999999999999998887761 11234433332111111 221 122233444 677899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-HHHHHHHHhhcCCCceE-EeeCC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEKILMHNSRGINFQ-ILSNP 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~~l~~~~~g~~~~-v~~~P 156 (480)
+|++++||. |. .+.+++.++......+++|+. +--|.+ ..+...+.... .-+. ..-.|
T Consensus 62 s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS---~aaG~tl~~l~~~l~~~~--rviRvmpNtp 121 (267)
T KOG3124|consen 62 SDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS---VAAGKTLSSLESKLSPPT--RVIRVMPNTP 121 (267)
T ss_pred ccceeEeec-ch--------------hHHHHhhcCccccccceEEEE---EeecccHHHHHHhcCCCC--ceEEecCCCh
Confidence 999999996 32 246677777776677777763 222332 33433333111 0111 12355
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
+...+|... +..|+. ...+..+.++++++..+
T Consensus 122 ~~v~eg~sv--------~~~g~~---~~~~D~~l~~~ll~~vG 153 (267)
T KOG3124|consen 122 SVVGEGASV--------YAIGCH---ATNEDLELVEELLSAVG 153 (267)
T ss_pred hhhhcCcEE--------EeeCCC---cchhhHHHHHHHHHhcC
Confidence 666666531 222322 23455678888888765
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.21 Score=50.21 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCCh-hHHHhhhhcccCCCCCCCC
Q 011650 311 VNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIH 388 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~ 388 (480)
++.....+ ..+.+.+|+|+|.. .-+..+++.|...| .+|.++|+-... .++...++
T Consensus 166 v~~a~~~~-~~l~~~~V~ViGaG----------~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g----------- 223 (311)
T cd05213 166 VELAEKIF-GNLKGKKVLVIGAG----------EMGELAAKHLAAKGVAEITIANRTYERAEELAKELG----------- 223 (311)
T ss_pred HHHHHHHh-CCccCCEEEEECcH----------HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC-----------
Confidence 44444333 34688999999963 36778888888876 579999986443 23333332
Q ss_pred CCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC--CCChHHHhhcCcEEEEe
Q 011650 389 LQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLRKIGFIVYSI 465 (480)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~~~g~~y~~i 465 (480)
..+...+++++++..+|+||.+|..+++.++....+.....++.+|+|... -++++-..-.|+.++-|
T Consensus 224 ---------~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~v 293 (311)
T cd05213 224 ---------GNAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTI 293 (311)
T ss_pred ---------CeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEH
Confidence 011122456788899999999999998733222222222224679999874 34544333346666554
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.078 Score=54.18 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=33.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+-.++.+... ...+|++.|++++|++..++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 589999999999876555554 23689999999999998876
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.037 Score=54.71 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=42.2
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|. +|.|+|..|..+ |.+|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12334468999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999999643
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.049 Score=49.02 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=31.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|||.|.+|...+..|.+. |++|++++. +..+++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp--~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP--EICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC--ccCHHHH
Confidence 4799999999999999999998 999999963 3334443
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.05 Score=57.68 Aligned_cols=120 Identities=12% Similarity=0.168 Sum_probs=78.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
.|+|+|+. .....+++.|.++|++|.+||......+...... ..+ ..+..+.+
T Consensus 1 ~IG~IGLG----------~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~---------------~~g--~~~~~~~s 53 (467)
T TIGR00873 1 DIGVIGLA----------VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH---------------AKG--KKIVGAYS 53 (467)
T ss_pred CEEEEeeH----------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc---------------cCC--CCceecCC
Confidence 37888874 4889999999999999999998544322111100 000 11334456
Q ss_pred hhhhc---ccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCCccc
Q 011650 406 AYEAT---KDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPLDKW 472 (480)
Q Consensus 406 ~~~a~---~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~~~~ 472 (480)
+.+.+ +.+|+|++++...+.-+--.+.+...+.+..+|||+.+.... +.+.+.|+.|.+.|.+.-.|
T Consensus 54 ~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 54 IEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred HHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 66644 578999999888543222235666666666699999997743 34456799999988755443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.043 Score=56.06 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=48.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHHHhcCCCEEEe-cCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEP-GLEEVVKQCRGKNLFFS-TDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~-~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
+||+|+| .|++|..+...|.++ +..+++++..+++...+......++.+. ++..- ...+.+. .++++ +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-----VADMEVVSTDPEA-VDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCccccccccccccccccc-----ccceEEEeCCHHH-hcC
Confidence 6899998 899999999999875 5669999866654433211111111000 00000 0123332 35544 689
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|+|.
T Consensus 77 ~DvVf~a~p~ 86 (349)
T PRK08664 77 VDIVFSALPS 86 (349)
T ss_pred CCEEEEeCCh
Confidence 9999999874
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.036 Score=55.49 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=74.0
Q ss_pred HHhhHhHHHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhccc
Q 011650 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNK 380 (480)
Q Consensus 301 ~~N~~~~~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~ 380 (480)
.+...||-..-.++.+++. ..+..+|+|+|+.. .+-.+++.|.+.|.+|.+||+.-. .+....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~G~----------mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~---- 77 (304)
T PLN02256 14 AIDAAQPFDYESRLQEELE-KSRKLKIGIVGFGN----------FGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL---- 77 (304)
T ss_pred cccccCCCChHhHHhHhhc-cCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECccH-HHHHHHc----
Confidence 3444455444445555553 33677999999744 677899999999999999998742 2222222
Q ss_pred CCCCCCCCCCCCCCCCcCceEEecChhhhc-ccCcEEEEeecCcccccccHHHH-HhhcCCCCEEEEcCCC
Q 011650 381 FDWDHPIHLQPTSPSTINQVIVASDAYEAT-KDSHGVCILTEWDEFKNLDYQKI-YNNMQKPAFVFDGRNI 449 (480)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~d~~vi~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~~~ 449 (480)
++...++.++.+ .++|+|+++|+...+.++- +++ ...+++..+|+|.-.+
T Consensus 78 ------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl-~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 78 ------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVL-RSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred ------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHH-HhhhhhccCCCCEEEecCCc
Confidence 233456777765 4799999999987655422 233 2334555689999883
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.049 Score=50.42 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=58.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cC----HHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TD----VEK 74 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d----~~~ 74 (480)
++|+|||- ..+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-+.| .+ +.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 47999995 67899999999988 89999999764322 111100 0 00111 12 556
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
.++.||+||.+++.|-.. .. ...+++|++||+.++.
T Consensus 123 ~~~~ADIVIsAvG~~~~~--------i~-----------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 123 CLSQSDVVITGVPSPNYK--------VP-----------TELLKDGAICINFASI 158 (197)
T ss_pred HhhhCCEEEEccCCCCCc--------cC-----------HHHcCCCcEEEEcCCC
Confidence 689999999999876210 01 2457889999985543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.05 Score=43.52 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++++|+|.|.+|.+++..+.+.+ +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 47999999999999999999862 457777765
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.084 Score=56.24 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA 41 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
+||.|+|+|..|.++|..|.++ |++|+++|++.....+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARHK 53 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHHH
Confidence 5799999999999999999998 9999999987655443
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.012 Score=55.70 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=44.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
.+|+|||+|.+|..++..+.....|+++++ +|.++++......+ .+ +...+++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999886432224788776 78887655321111 11 111234555444 4
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999885
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.077 Score=54.01 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=61.9
Q ss_pred ceEEEECCChhHHHHHHHHHHc--------CCCCeEE-EEeCC----------HHHHHHHHcCCCCCCCCChHHHHHHhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDIS----------VPRINAWNSDQLPIYEPGLEEVVKQCR 62 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~----------~~~v~~l~~g~~~~~e~~l~~~~~~~~ 62 (480)
+||+|+|+|.||..++..|.++ +.+.+|+ ++|++ .+++..+.+....+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~--~-------- 72 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD--Y-------- 72 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc--C--------
Confidence 5899999999999999988754 1135655 45643 3333333221100000 0
Q ss_pred CCCEEEecCHHHHh--hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc-HHHHHH
Q 011650 63 GKNLFFSTDVEKHV--REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT-AEAIEK 139 (480)
Q Consensus 63 ~~~l~~t~d~~~a~--~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~ 139 (480)
.....++|+++.+ .+.|+|+.|+|+..+. . +.+.+-+...+..|.-|+..++-|... .+++.+
T Consensus 73 -~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~------~-------~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~ 138 (341)
T PRK06270 73 -PEGGGEISGLEVIRSVDADVVVEATPTNIET------G-------EPALSHCRKALERGKHVVTSNKGPLALAYKELKE 138 (341)
T ss_pred -ccccccCCHHHHhhccCCCEEEECCcCcccc------c-------chHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHH
Confidence 0011245777766 3689999998864321 0 112233344455677776543333322 344544
Q ss_pred HHHh
Q 011650 140 ILMH 143 (480)
Q Consensus 140 ~l~~ 143 (480)
..++
T Consensus 139 ~A~~ 142 (341)
T PRK06270 139 LAKK 142 (341)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=54.73 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|..|..+|..|+++ |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999988 99999999654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.036 Score=55.89 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=53.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|+|.+|...+..+... ++.+|++ .|.+++....+... +.+.+. ............++....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 69999999999999998764 5778775 57777754444331 111111 00000000112346677789998899999
Q ss_pred EEEEccCCC
Q 011650 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999987643
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.068 Score=47.08 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=47.0
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|+| ...+|.++|..|.++ |..|+.++.+ |.++++.++.||+
T Consensus 30 ~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~ADI 74 (140)
T cd05212 30 KVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDADV 74 (140)
T ss_pred EEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCCE
Confidence 567776 356777777777766 6777766642 1256667899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
|+.+++.+.. .+ .+.+++|++|++-
T Consensus 75 VvsAtg~~~~---------i~-----------~~~ikpGa~Vidv 99 (140)
T cd05212 75 VVVGSPKPEK---------VP-----------TEWIKPGATVINC 99 (140)
T ss_pred EEEecCCCCc---------cC-----------HHHcCCCCEEEEc
Confidence 9999986521 11 2457899998853
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.075 Score=47.88 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCC
Q 011650 308 TRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++.+ +..+-++++++|.|+|-+- .-..+|+..|.++|+.|.+.+-.-
T Consensus 21 ~aii~lL-~~~~~~l~Gk~v~VvGrs~---------~VG~Pla~lL~~~~atVt~~h~~T-------------------- 70 (160)
T PF02882_consen 21 LAIIELL-EYYGIDLEGKKVVVVGRSN---------IVGKPLAMLLLNKGATVTICHSKT-------------------- 70 (160)
T ss_dssp HHHHHHH-HHTT-STTT-EEEEE-TTT---------TTHHHHHHHHHHTT-EEEEE-TTS--------------------
T ss_pred HHHHHHH-HhcCCCCCCCEEEEECCcC---------CCChHHHHHHHhCCCeEEeccCCC--------------------
Confidence 3344433 3344578999999999543 467889999999999999977653
Q ss_pred CCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
.++++.++.||.||.++..+.|-.-+ ..++.++|||..--+.
T Consensus 71 ----------------~~l~~~~~~ADIVVsa~G~~~~i~~~------~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 ----------------KNLQEITRRADIVVSAVGKPNLIKAD------WIKPGAVVIDVGINYV 112 (160)
T ss_dssp ----------------SSHHHHHTTSSEEEE-SSSTT-B-GG------GS-TTEEEEE--CEEE
T ss_pred ----------------CcccceeeeccEEeeeeccccccccc------cccCCcEEEecCCccc
Confidence 24566789999999999999985433 2345569999865433
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.02 Score=52.19 Aligned_cols=69 Identities=20% Similarity=0.486 Sum_probs=45.2
Q ss_pred CceEEEECCChhHHHHHHH-HHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGPTMAV-IALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~-La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|-++.+||+|++|.+++.. +.++ .|++++ +||++++.+-.-..+ .++++ -++++.-++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~-~~~~iv~~FDv~~~~VG~~~~~-v~V~~-----------------~d~le~~v~~ 144 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKK-NGMKIVAAFDVDPDKVGTKIGD-VPVYD-----------------LDDLEKFVKK 144 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhh-cCceEEEEecCCHHHhCcccCC-eeeec-----------------hHHHHHHHHh
Confidence 3579999999999998853 4433 266654 699999876433322 33321 123344344
Q ss_pred -cCCEEEEEccC
Q 011650 78 -EANIVFVSVNT 88 (480)
Q Consensus 78 -~aDvVii~Vpt 88 (480)
+.|+.|+|||.
T Consensus 145 ~dv~iaiLtVPa 156 (211)
T COG2344 145 NDVEIAILTVPA 156 (211)
T ss_pred cCccEEEEEccH
Confidence 78999999984
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.062 Score=57.01 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecCHHHHhh
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (480)
++|.|||+|..|.+ +|..|.++ |++|+++|.+.. ..+.+.+. ++.+ ..+. +.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~-~~~~ 65 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDA-ENIK 65 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCH-HHCC
Confidence 57999999999999 78889888 999999998653 22233321 1222 1222 3366
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|.+ .+ .++.+.+ ++ ...+++..+|.++.|..-+||.. +..+|+..+
T Consensus 66 ~~d~vv~spgi~~~--------~~---~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 66 DADVVVYSSAIPDD--------NP---ELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCEEEECCCCCCC--------CH---HHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 89988876433321 22 2222211 12 22333346777777776555544 677777654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.093 Score=49.38 Aligned_cols=65 Identities=11% Similarity=0.208 Sum_probs=45.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec---CHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST---DVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~~ 77 (480)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .+..+.+. +++++.. ... .+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~-dl~ 68 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDAD-ILE 68 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHH-HhC
Confidence 4799999999999999999998 899999987643 33333321 2233211 222 378
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++++||.|++
T Consensus 69 ~~~lVi~at~ 78 (205)
T TIGR01470 69 GAFLVIAATD 78 (205)
T ss_pred CcEEEEECCC
Confidence 8999998864
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.053 Score=53.39 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=54.4
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+. +|.|+|..|..+ |..|++++.. |.|+.+..++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998731 235566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.++.-|.. +. ...+++|++||+.+
T Consensus 210 Ivv~AvG~p~~--------------i~------~~~vk~gavVIDvG 236 (287)
T PRK14176 210 ILVVATGVKHL--------------IK------ADMVKEGAVIFDVG 236 (287)
T ss_pred EEEEccCCccc--------------cC------HHHcCCCcEEEEec
Confidence 99999876521 10 13678899998744
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.16 Score=45.76 Aligned_cols=126 Identities=16% Similarity=0.286 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCC
Q 011650 311 VNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQ 390 (480)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (480)
++-|.+..+..+.++++.|+|... -.-.+++.|...|+.|.++|--- .-.++.
T Consensus 10 ~d~i~r~t~~~l~Gk~vvV~GYG~----------vG~g~A~~lr~~Ga~V~V~e~DP-i~alqA---------------- 62 (162)
T PF00670_consen 10 VDGIMRATNLMLAGKRVVVIGYGK----------VGKGIARALRGLGARVTVTEIDP-IRALQA---------------- 62 (162)
T ss_dssp HHHHHHHH-S--TTSEEEEE--SH----------HHHHHHHHHHHTT-EEEEE-SSH-HHHHHH----------------
T ss_pred HHHHHhcCceeeCCCEEEEeCCCc----------ccHHHHHHHhhCCCEEEEEECCh-HHHHHh----------------
Confidence 344454445567899999999755 78899999999999999997421 111111
Q ss_pred CCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEEecC
Q 011650 391 PTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYSIGK 467 (480)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG~ 467 (480)
.++++++. +++++++.+|.+|-.|..+.. ++.+. ...|++.+++.+.-.. ++-+.+++.+..-..+..
T Consensus 63 -----~~dGf~v~-~~~~a~~~adi~vtaTG~~~v--i~~e~-~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~ 133 (162)
T PF00670_consen 63 -----AMDGFEVM-TLEEALRDADIFVTATGNKDV--ITGEH-FRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRP 133 (162)
T ss_dssp -----HHTT-EEE--HHHHTTT-SEEEE-SSSSSS--B-HHH-HHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEET
T ss_pred -----hhcCcEec-CHHHHHhhCCEEEECCCCccc--cCHHH-HHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCC
Confidence 12445554 689999999999999999764 23333 4567777666665433 233455556666666655
Q ss_pred CCccc
Q 011650 468 PLDKW 472 (480)
Q Consensus 468 ~~~~~ 472 (480)
....|
T Consensus 134 ~v~~y 138 (162)
T PF00670_consen 134 QVDRY 138 (162)
T ss_dssp TEEEE
T ss_pred CeeEE
Confidence 44443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.062 Score=56.82 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhccc---CcEEEEeecCc
Q 011650 347 IDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKD---SHGVCILTEWD 423 (480)
Q Consensus 347 ~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~d~~vi~~~~~ 423 (480)
..+++.|.++|++|.+||--....+..... .+.-.+++.++|+.+.++. +|+|+++....
T Consensus 3 ~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~-----------------~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g 65 (459)
T PRK09287 3 KNLALNIASHGYTVAVYNRTPEKTDEFLAE-----------------EGKGKKIVPAYTLEEFVASLEKPRKILLMVKAG 65 (459)
T ss_pred HHHHHHHHhCCCeEEEECCCHHHHHHHHHh-----------------hCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCc
Confidence 468899999999999999865443221110 0001246678899998875 89999999887
Q ss_pred ccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCCcc
Q 011650 424 EFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPLDK 471 (480)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~~~ 471 (480)
+--+--++.+...+.+..+|||+.|...+ +.+++.|+.|.+.|.++-.
T Consensus 66 ~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 66 APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 54332335667777766699999998754 3455679999999875543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.078 Score=52.62 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=60.4
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|=+. ....+++..|.++|+.|.+++..-
T Consensus 152 ~~i~~~Gk~V~viGrs~---------~mG~PmA~~L~~~g~tVtv~~~rT------------------------------ 192 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSN---------LVGKPMAQLLLAANATVTIAHSRT------------------------------ 192 (296)
T ss_pred hCCCCCCCEEEEEcCCc---------chHHHHHHHHHhCCCEEEEECCCC------------------------------
Confidence 34467999999999432 578899999999999999986321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
.++.++++.||+||.++..+.+-.-+| +++..+|||.--
T Consensus 193 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------lk~GavVIDvGi 231 (296)
T PRK14188 193 ------RDLPAVCRRADILVAAVGRPEMVKGDW------IKPGATVIDVGI 231 (296)
T ss_pred ------CCHHHHHhcCCEEEEecCChhhcchhe------ecCCCEEEEcCC
Confidence 135677889999999999998644322 455568888753
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.022 Score=53.46 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=32.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.||.|||+|.+|..+|..|+.. |. +++++|.+.-..+.++
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchh
Confidence 3799999999999999999998 75 8999998854333344
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.023 Score=44.71 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||.|++|.-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998753
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.1 Score=52.65 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|-+|. +|..+|++. |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999998887 455666632 8999999999999887765
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.062 Score=52.78 Aligned_cols=71 Identities=31% Similarity=0.588 Sum_probs=53.6
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+ .+|.|+|..|.++ |..|+.+.. .|.++.+.++.||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs---------------------------------~T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHI---------------------------------FTKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCC---------------------------------CCcCHHHHHhhCC
Confidence 479999987 9999999999988 889987642 1234556689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-.- . ..++++|++||+.+
T Consensus 203 IvV~AvGkp~~i---------~-----------~~~vk~gavvIDvG 229 (281)
T PRK14183 203 IVIVGVGKPNLI---------T-----------EDMVKEGAIVIDIG 229 (281)
T ss_pred EEEEecCccccc---------C-----------HHHcCCCcEEEEee
Confidence 999999865211 1 24578899998744
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.064 Score=52.80 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=53.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+||| ...+|.|+|..|.++ |..|++++.. |.++++.++.||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 588999999999988 8899988631 235566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|-- .+ ..++++|++||+.+
T Consensus 204 IvI~AvG~p~~---------i~-----------~~~ik~gavVIDvG 230 (284)
T PRK14190 204 ILIVAVGKPKL---------IT-----------ADMVKEGAVVIDVG 230 (284)
T ss_pred EEEEecCCCCc---------CC-----------HHHcCCCCEEEEee
Confidence 99999986621 11 23568899998743
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.048 Score=55.30 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=41.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||||+|+|+ |++|.-+...|.++ .|..++..+.-. +.. |+ ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 468999996 99999999999975 133344455332 211 21 111111 1133322 2233 68
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 66 ~vD~vFla~p~ 76 (336)
T PRK05671 66 QVQLAFFAAGA 76 (336)
T ss_pred CCCEEEEcCCH
Confidence 99999999874
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.039 Score=57.95 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=45.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcC------C--CCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC------P--SIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~------~--G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
+||+|+|+|.||..++..|.++. . +.+|. ++|++.++...+. . ....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~--------------~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L--------------PGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C--------------cccceeCCH
Confidence 58999999999999998876531 1 23443 5688866532110 0 123467888
Q ss_pred HHHhh--cCCEEEEEccC
Q 011650 73 EKHVR--EANIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~--~aDvVii~Vpt 88 (480)
++.+. +.|+|++|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88775 57999999864
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.056 Score=53.63 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcc
Q 011650 345 PAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
....+++.|.+.|.+|.+||+.....+.... .+....+++.++++++|+|+++++.+.
T Consensus 7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~~~s~~~~~~~advVil~vp~~~ 64 (288)
T TIGR01692 7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------AGAQAAASPAEAAEGADRVITMLPAGQ 64 (288)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEeCCChH
Confidence 5678999999999999999986543222111 124456788999999999999999844
Q ss_pred -ccccc--HHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011650 425 -FKNLD--YQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYS 464 (480)
Q Consensus 425 -~~~~~--~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
++++- .+.+...+++..+|+|+..+-.. +.+++.|+.|..
T Consensus 65 ~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 65 HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 34321 13455556666799999976653 244456888865
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.15 Score=54.02 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=33.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+||.|||+|..|.+.|..|.+. |++|+++|........+.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l~ 49 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKAA 49 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHHH
Confidence 4799999999999998888888 999999998755444343
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.024 Score=53.71 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=32.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|||+|.+|..+|..|++. |. +++++|.+.-....+++
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~R 70 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLNR 70 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEeccccccc
Confidence 3799999999999999999998 65 59999998533344443
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.049 Score=54.53 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++||+||| .||+|.-+...|..+ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 46899999 699999999999886 44454444
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.1 Score=54.69 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=32.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|||+|+|+|.-|.++|..|.+. |++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc
Confidence 47999999999999999999998 9999999977654
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.019 Score=59.74 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||.|.+|+.+|..|++. |++|+++|+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999864
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.051 Score=48.79 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=62.7
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|- .+-+..++..|..+|.+|..|.+.-.. . ..+...+. . ....+ .....+.+...++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~--~-~~i~~~~~-n---~~~~~-~~~l~~~i~~t~d 62 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQ--I-EEINETRQ-N---PKYLP-GIKLPENIKATTD 62 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHH--H-HHHHHHTS-E---TTTST-TSBEETTEEEESS
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHH--H-HHHHHhCC-C---CCCCC-CcccCcccccccC
Confidence 6888885 467889999999999999999995422 1 12211110 0 00001 1122356778899
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCC-EEEEcCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPA-FVFDGRNI 449 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~-~i~D~~~~ 449 (480)
++++++++|.+++.++-..+++ -.+++....+... +|+=++++
T Consensus 63 l~~a~~~ad~IiiavPs~~~~~-~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 63 LEEALEDADIIIIAVPSQAHRE-VLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp HHHHHTT-SEEEE-S-GGGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred HHHHhCcccEEEecccHHHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999887765 2345544443332 44434444
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.2 Score=52.86 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|+|+|..|.++|..|.+. |++|+++|..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCC
Confidence 489999999999999999888 99999999764
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.043 Score=54.31 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=50.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe---cCHHHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS---TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~~ 78 (480)
++.|||+|-+|.+++..|++. |. +|++++|+.++.+++.+..... ..+... .+..+.+.+
T Consensus 127 ~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~~--------------~~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQV--------------GVITRLEGDSGGLAIEKA 190 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhhc--------------CcceeccchhhhhhcccC
Confidence 689999999999999999988 65 7999999999998886521000 011111 222344578
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||-|+|..
T Consensus 191 ~DiVInaTp~g 201 (282)
T TIGR01809 191 AEVLVSTVPAD 201 (282)
T ss_pred CCEEEECCCCC
Confidence 99999998753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.077 Score=52.31 Aligned_cols=71 Identities=20% Similarity=0.409 Sum_probs=53.8
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.|+++..++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899977531 345666689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|--- + ..++++|++||+..
T Consensus 201 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDVG 227 (287)
T PRK14173 201 VLVVAVGRPHLI---------T-----------PEMVRPGAVVVDVG 227 (287)
T ss_pred EEEEecCCcCcc---------C-----------HHHcCCCCEEEEcc
Confidence 999999866211 1 24678999998743
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=50.51 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=66.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----eEEEE-CCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA----RLSIY-DPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|+ ...+..+++.|.+.|. +|.+| |+.-...+.... .++
T Consensus 2 kI~~IG~----------G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----------------------~g~ 49 (266)
T PLN02688 2 RVGFIGA----------GKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS----------------------LGV 49 (266)
T ss_pred eEEEECC----------cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------cCC
Confidence 6888886 3578889999999998 89999 774332221111 235
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
...++..++++++|+|+++++-..+++. +..+...+.+..+|+..-+-.+.+.+.+
T Consensus 50 ~~~~~~~e~~~~aDvVil~v~~~~~~~v-l~~l~~~~~~~~~iIs~~~g~~~~~l~~ 105 (266)
T PLN02688 50 KTAASNTEVVKSSDVIILAVKPQVVKDV-LTELRPLLSKDKLLVSVAAGITLADLQE 105 (266)
T ss_pred EEeCChHHHHhcCCEEEEEECcHHHHHH-HHHHHhhcCCCCEEEEecCCCcHHHHHH
Confidence 5677888888999999999975544442 2344444455557787756566666653
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.021 Score=59.39 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|+|||.|.+|+++|..|+++ |++|+++|.++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 6999999999999999999998 999999999753
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=1 Score=46.06 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCC-CCCCChHHHHHHhcCCCEEE-ecCHHHHh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLP-IYEPGLEEVVKQCRGKNLFF-STDVEKHV-- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~-~~e~~l~~~~~~~~~~~l~~-t~d~~~a~-- 76 (480)
.+|.|||+|. |..+.. +.+..+.-+|+++|+|++.++..++- ..+ +....+ ...++++ ..|..+-+
T Consensus 152 krVLIIGgGd-G~tlre-lLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-------~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGGD-GLALRE-VLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-------FDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCCH-HHHHHH-HHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-------CCCceEEEECcHHHHHHh
Confidence 4799999985 444444 44442236899999999998877741 000 000000 1134433 34444333
Q ss_pred --hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH---HHHHHHhhcCCCceE
Q 011650 77 --REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA---IEKILMHNSRGINFQ 151 (480)
Q Consensus 77 --~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~---l~~~l~~~~~g~~~~ 151 (480)
...|+||+-+|.|... ...--+-.+.++.+...|+++.+++..++.+...... +...+++.......+
T Consensus 223 ~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 2469999998765421 1111223567788899999999887766555333222 334455543222233
Q ss_pred EeeCCcc
Q 011650 152 ILSNPEF 158 (480)
Q Consensus 152 v~~~Pe~ 158 (480)
..+-|.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 4456665
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.21 Score=52.89 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=29.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||.|||+|..|.+.|..|+++ |++|.++|.++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 799999999999998888888 99999999865
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.12 Score=54.48 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=69.3
Q ss_pred HHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEEC--CCCChhHHHhhhhcccCCCCCCCCC
Q 011650 312 NRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYD--PQVPQEHIQRDLQMNKFDWDHPIHL 389 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+.+++..+..+.+++|+|+|... -...+++.|...|++|.+|| |....+. ..
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~----------IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A--~~-------------- 295 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD----------VGKGCAQALRGFGARVVVTEIDPICALQA--AM-------------- 295 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCchhHHHH--Hh--------------
Confidence 33444444578999999999743 78889999999999999994 4432111 11
Q ss_pred CCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 390 QPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
.++.+ .+++++++.+|+|+++|..+.+ ++. +..+.|++.+++++.-+.
T Consensus 296 --------~G~~~-~~leell~~ADIVI~atGt~~i--I~~-e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 296 --------EGYQV-VTLEDVVETADIFVTATGNKDI--ITL-EHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --------cCcee-ccHHHHHhcCCEEEECCCcccc--cCH-HHHhccCCCcEEEEcCCC
Confidence 12222 3678899999999999876543 343 445778888888888554
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.22 Score=47.80 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=33.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|..+|..|++. |. +++++|.+.-....+++
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnR 53 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNR 53 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcc
Confidence 3799999999999999999998 65 89999987655555554
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.086 Score=53.67 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEE-eCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVV-DIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~-D~~ 35 (480)
|||+|+|+ |++|..++..|..+ +.+++..+ +.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEECh
Confidence 69999995 99999999988876 35788877 544
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.27 Score=51.84 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=30.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+++|.|||+|..|.+.++.|.+.+.|++|+++|.++
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 467999999999999999988764238999999764
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.091 Score=51.68 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=53.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.|+++..++||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899877421 345666689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|--- + ..++++|++||+.+
T Consensus 202 IvI~AvG~p~~i---------~-----------~~~vk~GavVIDvG 228 (282)
T PRK14169 202 ILVVAVGVPHFI---------G-----------ADAVKPGAVVIDVG 228 (282)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCcEEEEee
Confidence 999999865211 1 24678999998743
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.099 Score=54.64 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=68.1
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC-------CcC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS-------TIN 398 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 398 (480)
+|+|+|+.| ..+.++..|.+.|.+|.+||+.-..-+ .+... .-|+ .+..-. ...
T Consensus 2 kI~vIGlG~----------~G~~lA~~La~~G~~V~~~d~~~~~v~---~l~~g----~~~~--~e~~l~~~~~~~~~~g 62 (411)
T TIGR03026 2 KIAVIGLGY----------VGLPLAALLADLGHEVTGVDIDQEKVD---KLNKG----KSPI--YEPGLDELLAKALAAG 62 (411)
T ss_pred EEEEECCCc----------hhHHHHHHHHhcCCeEEEEECCHHHHH---HhhcC----CCCC--CCCCHHHHHHHhhhcC
Confidence 699999987 899999999999999999998543321 12100 0010 000000 012
Q ss_pred ceEEecChhhhcccCcEEEEeecCcccc--ccc-------HHHHHhhcCCCCEEEEcCCCC
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFK--NLD-------YQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~--~~~-------~~~~~~~~~~~~~i~D~~~~~ 450 (480)
.++..+++.++++++|+++++++.+.-. ++| .+.+...+++..+|+|...+.
T Consensus 63 ~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 63 RLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred CeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 2667788888999999999999987421 122 234555566667899977554
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.094 Score=51.60 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=53.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||- ..+|.|+|..|.++ |..|+.+... |.|+++.++.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67999999999988 8899987531 345666689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-. +. ..++++|++||+.+
T Consensus 203 IvI~AvG~~~~--------------i~------~~~vk~GavVIDvG 229 (284)
T PRK14170 203 ILVVATGLAKF--------------VK------KDYIKPGAIVIDVG 229 (284)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence 99999986521 11 24678899998743
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.22 Score=53.47 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|+|+|..|.++|..|.++ |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999988 99999999754
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.095 Score=52.87 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++|+|+|+ .+.+..++..|...|.+|.++++.-... ..... .+
T Consensus 14 ~L~gktIgIIG~----------GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~----------------------~G 61 (330)
T PRK05479 14 LIKGKKVAIIGY----------GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA----------------------DG 61 (330)
T ss_pred hhCCCEEEEEee----------HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH----------------------CC
Confidence 357899999997 4689999999999999999987653322 11111 12
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
+... +..++++.+|+|+++++-....++-.+.+...+++..+|+=+.+
T Consensus 62 ~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G 109 (330)
T PRK05479 62 FEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHG 109 (330)
T ss_pred CeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 3333 78899999999999999766554332567667765545544433
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.052 Score=55.00 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=54.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH-Hhhc
Q 011650 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK-HVRE 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
|||+|||. |++|.-+...|+.+ .|..++..+.-+.+ .|. ++...+ ..+.+. ++++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 68999996 99999999999974 35667777643311 121 111111 124443 3333 2378
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhC-CCCcEEEEec
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS-KSDKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~S 127 (480)
+|++|+|+|.. +...+.+.+ ..|..||+.|
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECC
Confidence 99999998742 233344433 4688888876
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.095 Score=51.94 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=53.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.+... |.++++.++.||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899887421 335666688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-. .+ ..++++|++||+.+
T Consensus 204 IvIsAvGkp~~---------i~-----------~~~ik~gavVIDvG 230 (297)
T PRK14186 204 ILVAAAGRPNL---------IG-----------AEMVKPGAVVVDVG 230 (297)
T ss_pred EEEEccCCcCc---------cC-----------HHHcCCCCEEEEec
Confidence 99999986521 11 24678999998743
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.08 Score=52.76 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
-||+|+| .||.|.-+...|+.+ |..++..+.-+.. + . ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~-----------~-----------------~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR-----------K-----------------D-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc-----------c-----------------C-cCCHhHhhcCCC
Confidence 4899998 599999999999986 5666655532211 0 0 013344457899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999974
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.052 Score=51.72 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred EEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+|. |.+|.+++..|.+. +++|.++-|++ +..+.+......+-+.+. .-..++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~------------~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEADY------------DDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-T------------T-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeeccc------------CCHHHHHHHHcCCc
Confidence 789996 99999999999997 99999999986 345566543221111111 01134456789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.064 Score=52.95 Aligned_cols=93 Identities=15% Similarity=0.011 Sum_probs=62.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. ..+..++..|.++|.+|.+||+.-...+.....+ .+....+
T Consensus 2 ~I~IIG~G----------~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g---------------------~~~~~~~ 50 (279)
T PRK07417 2 KIGIVGLG----------LIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG---------------------LVDEAST 50 (279)
T ss_pred eEEEEeec----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC---------------------CcccccC
Confidence 68999864 3778899999999999999998533221111111 0111223
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
..++++++|.||++++-+...+. .+++...+++..+|.|...+-
T Consensus 51 ~~~~~~~aDlVilavp~~~~~~~-~~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 51 DLSLLKDCDLVILALPIGLLLPP-SEQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred CHhHhcCCCEEEEcCCHHHHHHH-HHHHHHhCCCCcEEEeCcchH
Confidence 34568899999999997765442 456666666667888877653
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.047 Score=44.71 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=45.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE-- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
.+|+|+|+|..|..++..+.+. .|+. +.++|.+++++.+-- .++.+..+++++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~-~g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM-RGFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH-HCECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHH-cCCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 3799999999999988655543 2665 557899987543111 245566666665554
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|+-++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999984
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.06 Score=54.82 Aligned_cols=67 Identities=12% Similarity=0.255 Sum_probs=40.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~ 76 (480)
+||+|+| .|++|.-+...|+++ +| ++..+..... .|. ++.+.+ ..+.+.. +. +.+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~--~hP~~~l~~las~rs------aGk-~~~~~~----------~~~~v~~~~~-~~~ 67 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR--DFPYSSLKMLASARS------AGK-KVTFEG----------RDYTVEELTE-DSF 67 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC--CCCcceEEEEEccCC------CCC-eeeecC----------ceeEEEeCCH-HHH
Confidence 6899999 599999999999986 55 4444432211 011 111111 1123322 33 346
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|+|+|.
T Consensus 68 ~~~D~vf~a~p~ 79 (344)
T PLN02383 68 DGVDIALFSAGG 79 (344)
T ss_pred cCCCEEEECCCc
Confidence 899999999975
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.16 Score=50.16 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|-+. .-..+|+..|.++|+.|.+.+-.
T Consensus 152 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVt~~hs~------------------------------- 191 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSN---------IVGKPMAMLLLQAGATVTICHSK------------------------------- 191 (285)
T ss_pred cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEecCC-------------------------------
Confidence 34467899999999654 45789999999999999984321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
..++.+.++.||.||.++..+.| ++. +.+++.++|||.-
T Consensus 192 -----t~~l~~~~~~ADIVV~avG~~~~--i~~----~~ik~gavVIDVG 230 (285)
T PRK14189 192 -----TRDLAAHTRQADIVVAAVGKRNV--LTA----DMVKPGATVIDVG 230 (285)
T ss_pred -----CCCHHHHhhhCCEEEEcCCCcCc--cCH----HHcCCCCEEEEcc
Confidence 12566778999999999999987 443 3455567999975
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.18 Score=49.72 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=61.0
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-++++++|.|+|=|- .-..+++..|.++|+.|.+..-.-
T Consensus 148 ~~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVtichs~T----------------------------- 189 (287)
T PRK14173 148 HYGIPLAGKEVVVVGRSN---------IVGKPLAALLLREDATVTLAHSKT----------------------------- 189 (287)
T ss_pred HcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344567999999999543 577899999999999999865422
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 190 -------~~l~~~~~~ADIvIsAvGkp~~i~--~~~v----k~GavVIDVG 227 (287)
T PRK14173 190 -------QDLPAVTRRADVLVVAVGRPHLIT--PEMV----RPGAVVVDVG 227 (287)
T ss_pred -------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEcc
Confidence 245677899999999999999854 3333 4456999975
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.28 Score=51.71 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=66.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (480)
++|.|+|.|..|.+.|..|+++ |++|+++|.++.. .+++.+- ..++++ .........
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~~~~~~~l~~~-----------------~~gi~~~~g~~~~~~~~ 66 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELKPERVAQIGKM-----------------FDGLVFYTGRLKDALDN 66 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCchhHHHHhhc-----------------cCCcEEEeCCCCHHHHh
Confidence 4799999999999999999988 9999999976532 2233220 001222 111222246
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhCC--CCcEEEEecCCCcccHHH-HHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVSK--SDKIVVEKSTVPVKTAEA-IEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~--~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
++|+||.+..-|.+ .|.+ +.+.+ -+...++ +..+|.+..|..-+||.. +..+|+..
T Consensus 67 ~~d~vv~spgi~~~--------~p~~---~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 67 GFDILALSPGISER--------QPDI---EAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CCCEEEECCCCCCC--------CHHH---HHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 89999887544321 2333 33221 1123332 246777777775555544 56777664
Q ss_pred c
Q 011650 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 136 g 136 (445)
T PRK04308 136 G 136 (445)
T ss_pred C
Confidence 3
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.27 Score=51.60 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=71.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-e----------CCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEe
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-D----------ISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D----------~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
++|+|.|.|++|..+|..|.+. |.+|+++ | +|.+.+.+.++.. ..+ ..+-.. .+.++.
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l-----~~~~~~---~~~~~i 302 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRI-----SEYAEE---FGAEYL 302 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCch-----hhhhhh---cCCeec
Confidence 5899999999999999999998 9999988 8 7777666655421 011 111000 012222
Q ss_pred cCHHHHh-hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCC
Q 011650 70 TDVEKHV-REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGI 148 (480)
Q Consensus 70 ~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~ 148 (480)
++ ++.+ .+||+++-|-.+..- + .+....+.+ .+.-+|.+.-.-|-| .+-.++|.+.+
T Consensus 303 ~~-~~i~~~d~DVliPaAl~n~I----------t----~~~a~~i~~---~~akiIvEgAN~p~t-~~A~~~L~~rG--- 360 (445)
T PRK09414 303 EG-GSPWSVPCDIALPCATQNEL----------D----EEDAKTLIA---NGVKAVAEGANMPST-PEAIEVFLEAG--- 360 (445)
T ss_pred CC-ccccccCCcEEEecCCcCcC----------C----HHHHHHHHH---cCCeEEEcCCCCCCC-HHHHHHHHHCC---
Confidence 22 2222 489999999764321 2 122233321 133344555554444 44556777654
Q ss_pred ceEEeeCCcccc
Q 011650 149 NFQILSNPEFLA 160 (480)
Q Consensus 149 ~~~v~~~Pe~~~ 160 (480)
+.+.|..+.
T Consensus 361 ---I~~vPD~la 369 (445)
T PRK09414 361 ---VLFAPGKAA 369 (445)
T ss_pred ---cEEECchhh
Confidence 456787653
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.11 Score=51.08 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=54.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.++.. |.|+++..+.||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899988631 335566689999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|-- + . ..++++|++||+.++
T Consensus 205 IvIsAvGk~~~--------------i----~--~~~ik~gavVIDvGi 232 (284)
T PRK14177 205 IIVGAVGKPEF--------------I----K--ADWISEGAVLLDAGY 232 (284)
T ss_pred EEEEeCCCcCc--------------c----C--HHHcCCCCEEEEecC
Confidence 99999986521 1 1 246789999997554
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.11 Score=44.14 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=59.5
Q ss_pred ceEEEEC----CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+||| -+..|.-+...|.++ |++|+.++.....+ .+.....++++.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 789999999999997 99999987653211 24566777776227
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+..++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 89999999873 2345666666554 3345555433 3345566666654
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=51.71 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=76.4
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++.++.|++++|+|+.= -.-+++..+..-|..|..|||+.+.+... .+
T Consensus 140 ~G~el~GKTLgvlG~Gr----------IGseVA~r~k~~gm~vI~~dpi~~~~~~~-a~--------------------- 187 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGR----------IGSEVAVRAKAMGMHVIGYDPITPMALAE-AF--------------------- 187 (406)
T ss_pred eeeEEeccEEEEeeccc----------chHHHHHHHHhcCceEEeecCCCchHHHH-hc---------------------
Confidence 34567899999999742 45678888899999999999999876543 23
Q ss_pred CceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
++.+. +++|.+..||-+.++++- |+-+++--++-...|++...||.+.+ ++|..
T Consensus 188 -gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 188 -GVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred -cceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 34443 789999999999999887 66666433455677888778888754 66654
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=51.51 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=53.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||- ..+|.|+|..|.++ |..|+.++.. |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999994 67999999999988 8899988531 235666789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|..- . ...+++|++||+.+
T Consensus 213 Ivv~AvGk~~~i---------~-----------~~~vk~gavVIDvG 239 (299)
T PLN02516 213 IVIAAAGQAMMI---------K-----------GDWIKPGAAVIDVG 239 (299)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999865211 1 24678999998744
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.4 Score=50.49 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|+|+|.+|.++|..|++. |++|++.|.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 3689999999999999999998 99999999865
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.082 Score=43.86 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 4799999999999999999998 89999999875
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.026 Score=58.16 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=32.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|..|+.+|..|+++ |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999998 999999998764
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.19 Score=45.78 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+..++++++|+|+|..- .-...+++.|.++|++|.+.+...
T Consensus 36 ~~~~~~l~gk~vlViG~G~---------~~G~~~a~~L~~~g~~V~v~~r~~---------------------------- 78 (168)
T cd01080 36 KRYGIDLAGKKVVVVGRSN---------IVGKPLAALLLNRNATVTVCHSKT---------------------------- 78 (168)
T ss_pred HHcCCCCCCCEEEEECCcH---------HHHHHHHHHHhhCCCEEEEEECCc----------------------------
Confidence 3344578999999999632 246779999999999998877532
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
+++.+.+.+||+||.+|.=+.+ ++.+.+ +...+|||.-.
T Consensus 79 --------~~l~~~l~~aDiVIsat~~~~i--i~~~~~----~~~~viIDla~ 117 (168)
T cd01080 79 --------KNLKEHTKQADIVIVAVGKPGL--VKGDMV----KPGAVVIDVGI 117 (168)
T ss_pred --------hhHHHHHhhCCEEEEcCCCCce--ecHHHc----cCCeEEEEccC
Confidence 2346678999999999998774 554443 44568999854
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.12 Score=50.76 Aligned_cols=71 Identities=24% Similarity=0.401 Sum_probs=53.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+..+.||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 4799999 578999999999988 8899888631 345556678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|--- . ..++++|++||+.+
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~vk~gavVIDvG 230 (282)
T PRK14180 204 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG 230 (282)
T ss_pred EEEEccCCcCcC---------C-----------HHHcCCCcEEEEec
Confidence 999999866311 1 24578899998743
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.13 Score=52.61 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=40.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||+|||||+ |++|.-+...+..+ +.++ +..+... ++++....-.+.. ..+.-..+.++ +
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss~-------~sg~~~~~f~g~~--------~~v~~~~~~~~-~ 63 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFSTS-------QAGGAAPSFGGKE--------GTLQDAFDIDA-L 63 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecch-------hhCCcccccCCCc--------ceEEecCChhH-h
Confidence 789999996 99999999845443 2666 6665432 1222111101100 01111123343 6
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|++|.|+|.
T Consensus 64 ~~~Divf~a~~~ 75 (369)
T PRK06598 64 KKLDIIITCQGG 75 (369)
T ss_pred cCCCEEEECCCH
Confidence 889999999874
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.077 Score=53.89 Aligned_cols=88 Identities=16% Similarity=0.373 Sum_probs=52.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~ 76 (480)
+||||||. |++|.-+...|..+ +.++ +..+.-... .|. .+...+ ..+.+. .+.++ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk-~~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGK-TVQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCC-CeeeCC----------cceEEEeCCHHH-h
Confidence 58999996 99999999999964 3677 555543211 121 111111 123332 24443 6
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEec
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKS 127 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~S 127 (480)
.++|++|.|+|.. +.+.+.+. ...|..||+.|
T Consensus 67 ~~~Divf~a~~~~-------------------~s~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 67 EGVDIAFFSAGGE-------------------VSRQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred cCCCEEEECCChH-------------------HHHHHHHHHHHCCCEEEECc
Confidence 8999999998742 23333332 24678888866
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.13 Score=50.61 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=53.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 478999999999987 8899977631 335666688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++|.+++-|-.- + ...+++|++||+.+
T Consensus 203 IvIsAvGkp~~i---------~-----------~~~vk~GavVIDvG 229 (282)
T PRK14166 203 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG 229 (282)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCCEEEEec
Confidence 999999865211 1 24578899998743
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.13 Score=51.26 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=31.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|.|.| +|++|..++..|.++ |++|++++++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 5799998 699999999999998 9999999987653
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.15 Score=51.59 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=51.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
++|.|+|+ |.||..++..|+.+. | .+++++++++++...+.+... .+.+ .++++++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el~---------------~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAELG---------------GGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHhc---------------cccH---HhHHHHHccC
Confidence 57999998 899999999998531 3 689999999888877664210 0111 2456778999
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|+.+...+
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999987654
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.23 Score=48.95 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=60.5
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++.+++|.|+|=+- .-..+|+..|.++|+.|.+.....
T Consensus 151 ~~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 191 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSN---------IVGKPVAQLLLNENATVTIAHSRT------------------------------ 191 (284)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44568999999999543 567889999999999999875432
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| +..+.+ ++.++|||.-
T Consensus 192 ------~~l~~~~~~ADIvI~AvG~~~~--i~~~~v----k~GavVIDvG 229 (284)
T PRK14170 192 ------KDLPQVAKEADILVVATGLAKF--VKKDYI----KPGAIVIDVG 229 (284)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2456678999999999999998 443334 3456899975
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.23 Score=48.93 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=60.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=|- .-..+|+..|.++|+.|.+..-..
T Consensus 150 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------ 190 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSN---------IVGRPLAGLMVNHDATVTIAHSKT------------------------------ 190 (282)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence 34467999999999533 467889999999999999865432
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| ++.+.+ ++.++|||.-
T Consensus 191 ------~~l~~~~~~ADIvI~AvG~p~~--i~~~~v----k~GavVIDvG 228 (282)
T PRK14169 191 ------RNLKQLTKEADILVVAVGVPHF--IGADAV----KPGAVVIDVG 228 (282)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCcEEEEee
Confidence 2456778999999999999999 444334 3456899975
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.13 Score=50.41 Aligned_cols=70 Identities=20% Similarity=0.424 Sum_probs=53.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.++.. |.++.+..++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999987 8899988631 235566678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-.- + ..++++|.+||+.
T Consensus 204 IvIsAvGkp~~i---------~-----------~~~ik~gavVIDv 229 (278)
T PRK14172 204 ILVVAIGRPKFI---------D-----------EEYVKEGAIVIDV 229 (278)
T ss_pred EEEEcCCCcCcc---------C-----------HHHcCCCcEEEEe
Confidence 999999866211 1 2457899999874
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.11 Score=51.13 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=53.1
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||-+ .+|.|+|..|... |..|+.++.+. .++++.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t---------------------------------~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKT---------------------------------ENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecCh---------------------------------hHHHHHHhhCC
Confidence 479999998 9999999999987 88999887532 23455688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-- +. ...+++|++||+-+
T Consensus 198 IvI~Avgk~~l--------------v~------~~~vk~GavVIDVg 224 (279)
T PRK14178 198 ILVSAAGKAGF--------------IT------PDMVKPGATVIDVG 224 (279)
T ss_pred EEEECCCcccc--------------cC------HHHcCCCcEEEEee
Confidence 99999975411 11 12358999998744
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.099 Score=52.79 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.8
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIAL 22 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~ 22 (480)
|||+|||+|.||..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999887
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.31 Score=51.16 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=29.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
||.|||+|..|.++|..|.++ |++|++.|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 589999999999999999998 999999997643
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.26 Score=48.83 Aligned_cols=120 Identities=8% Similarity=0.064 Sum_probs=68.6
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhh-h---cccCCCCCCCCCCCCCCCCcCce
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDL-Q---MNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
++|+|+|+.. ....++..|.++|.+|.+||+.-..-+..... . ..+.....- . .........++
T Consensus 2 ~~V~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~~~~i 69 (288)
T PRK09260 2 EKLVVVGAGV----------MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKL-T-EAARQAALARL 69 (288)
T ss_pred cEEEEECccH----------HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-C-HHHHHHHHhCe
Confidence 5899999754 78899999999999999999864432211100 0 000000000 0 00000012346
Q ss_pred EEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEE-EEcCCCCChHHHhh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFV-FDGRNILDVEKLRK 457 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i-~D~~~~~~~~~~~~ 457 (480)
+..+++.++++++|+|++++.-+. .+..-+.++.+.+++..+| .|+.. +++..+.+
T Consensus 70 ~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~ 127 (288)
T PRK09260 70 SYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST-MSPTEIAS 127 (288)
T ss_pred EEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHh
Confidence 778889899999999999987653 1222233455555555455 45555 55555543
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.44 Score=50.12 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=29.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|+|+|..|.+.+..|+++ |++|+++|...
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999888887 99999999754
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.23 Score=47.48 Aligned_cols=74 Identities=22% Similarity=0.287 Sum_probs=47.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC---eEEEEeCC----HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDIS----VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~----~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+||.|+|+|.+|..+|..|... |. +++++|++ .++.+.+... ..++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~--------~~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPD--------KNEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHH--------HHHHHHHhccCc--ccCCHHH
Confidence 4799999999999999999987 75 59999998 4443222110 011111100001 1135666
Q ss_pred HhhcCCEEEEEcc
Q 011650 75 HVREANIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
++.++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999999876
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.14 Score=47.45 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC-------cC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST-------IN 398 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 398 (480)
||+|+|+.| -.+.++-.|.++|.+|..||..-.. + ..+..... |+ .+..-.. ..
T Consensus 2 ~I~ViGlGy----------vGl~~A~~lA~~G~~V~g~D~~~~~--v-~~l~~g~~----p~--~E~~l~~ll~~~~~~~ 62 (185)
T PF03721_consen 2 KIAVIGLGY----------VGLPLAAALAEKGHQVIGVDIDEEK--V-EALNNGEL----PI--YEPGLDELLKENVSAG 62 (185)
T ss_dssp EEEEE--ST----------THHHHHHHHHHTTSEEEEE-S-HHH--H-HHHHTTSS----SS---CTTHHHHHHHHHHTT
T ss_pred EEEEECCCc----------chHHHHHHHHhCCCEEEEEeCChHH--H-HHHhhccc----cc--cccchhhhhccccccc
Confidence 799999999 8999999999999999999985332 1 22221111 11 0000000 14
Q ss_pred ceEEecChhhhcccCcEEEEeecCccccc--ccHH-------HHHhhcCCCCEEEEcCCCCC
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFKN--LDYQ-------KIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~~--~~~~-------~~~~~~~~~~~i~D~~~~~~ 451 (480)
++.+.++..++++++|+++|+++-|.-.+ .|.. .+...+++..+|+ .+.-+.
T Consensus 63 ~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvp 123 (185)
T PF03721_consen 63 RLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVP 123 (185)
T ss_dssp SEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSS
T ss_pred cchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEE
Confidence 57788899999999999999988765443 3433 4455555554444 444444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.28 Score=51.89 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=64.8
Q ss_pred eEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cCHHHHhhc
Q 011650 3 KICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (480)
+|-|||.|..|.+ +|..|+++ |++|+++|.+.. ..+.|.+. ++++. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999988 999999997653 22233321 12222 222 23667
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|.+ .|. ++.+.+ -+...+++..+|.+..|..-+||.. +..+|+..+
T Consensus 59 ~d~vV~spgi~~~--------~p~---~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 59 ADVVVVSAAIKDD--------NPE---IVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCEEEECCCCCCC--------CHH---HHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 9988776332211 232 222211 1223333446777777775555544 667777654
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.14 Score=50.39 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=52.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIAL--KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~--~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+||| .+.+|.|+|..|.+ + +..|+.+... |.++++.++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 4799999 57899999999987 5 7788877531 3356666899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
||+||.+++-|-. +. ..++++|++||+.
T Consensus 204 ADIvV~AvGkp~~--------------i~------~~~ik~GavVIDv 231 (284)
T PRK14193 204 ADIIVAAAGVAHL--------------VT------ADMVKPGAAVLDV 231 (284)
T ss_pred CCEEEEecCCcCc--------------cC------HHHcCCCCEEEEc
Confidence 9999999986521 11 2467899999874
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.034 Score=56.93 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=32.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+.+|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999998 999999998865
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.027 Score=56.19 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=47.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|.|.| .|++|..++..|+++ |++|++++++++....+........ .+.+.-..+++++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999998 9999999998765332221110000 011111123455567889
Q ss_pred EEEEEcc
Q 011650 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9988864
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.23 Score=48.97 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=61.6
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.++-++++++|.|+|=|- .-..+|+..|.++|+.|.+.+..-
T Consensus 150 ~~~~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~atVt~chs~t---------------------------- 192 (284)
T PRK14190 150 KEYNIDISGKHVVVVGRSN---------IVGKPVGQLLLNENATVTYCHSKT---------------------------- 192 (284)
T ss_pred HHcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEEeCCc----------------------------
Confidence 3344568999999999543 567889999999999999875321
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.-
T Consensus 193 --------~~l~~~~~~ADIvI~AvG~p~~--i~~~~i----k~gavVIDvG 230 (284)
T PRK14190 193 --------KNLAELTKQADILIVAVGKPKL--ITADMV----KEGAVVIDVG 230 (284)
T ss_pred --------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence 2466778999999999999998 444444 3456999974
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.15 Score=50.41 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=53.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+.++.. |.|+.+.+++||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987641 335566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-.- + ..++++|++||+.
T Consensus 206 IvVsAvGkp~~i---------~-----------~~~ik~gaiVIDV 231 (294)
T PRK14187 206 ILVAAVGIPNFV---------K-----------YSWIKKGAIVIDV 231 (294)
T ss_pred EEEEccCCcCcc---------C-----------HHHcCCCCEEEEe
Confidence 999999876211 1 2457789999874
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.29 Score=48.19 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=60.1
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++++.|.+.....
T Consensus 151 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~AtVtichs~T------------------------------ 191 (282)
T PRK14182 151 ARVDPKGKRALVVGRSN---------IVGKPMAMMLLERHATVTIAHSRT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467899999999543 567889999999999999976532
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvI~AvGk~~~i~--~~~i----k~gaiVIDvG 229 (282)
T PRK14182 192 ------ADLAGEVGRADILVAAIGKAELVK--GAWV----KEGAVVIDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEecCCcCccC--HHHc----CCCCEEEEee
Confidence 245667889999999999999844 3334 3456899975
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.06 Score=51.50 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=33.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.||.|+|+|.+|..+|..|+.. |. +++++|.+.-....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCccccc
Confidence 3799999999999999999998 65 79999987654445554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.67 Score=45.26 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=66.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
.||-|||.|--|. +..+.++ ..+|+.+|+|++.++..++- . |.+.. .....|++......+.- +.-|
T Consensus 74 k~VLIiGGGDGg~--~REvLkh--~~~v~mVeID~~Vv~~~k~~-l----P~~~~---~~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLEL--AHQLFKY--DTHVDFVQADEKILDSFISF-F----PHFHE---VKNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchHH--HHHHHCc--CCeeEEEECCHHHHHHHHHH-C----HHHHH---hhcCCCEEEeehhhhccCCcCC
Confidence 5899999999776 6777775 34999999999999877762 1 11111 12235565554433322 4689
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
+||+-.. + + .+..+.+.+.|+++-+++..|+.|-
T Consensus 142 VIIvDs~-~------------~----~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-P------------D----IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-C------------C----hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9997631 1 1 2345677888999999988887654
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.32 Score=55.44 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=64.1
Q ss_pred eEEEECCChhHHHH-HHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|.|||+|..|.+. |..|.++ |++|+++|.++. ..+.|.+.... +....+. +.+.++|
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~gi~-----------------~~~g~~~-~~~~~~d 65 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAKGAR-----------------FFLGHQE-EHVPEDA 65 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHCCCE-----------------EeCCCCH-HHcCCCC
Confidence 49999999999997 8888888 999999997642 23334331111 1111122 3366789
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH---------HH-HhhCCCCcEEEEecCCCcccHHH-HHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
+||++-.-|.+ ++. +..+.+ ++ ...++...+|.+..|..-+||.. +..+|+..
T Consensus 66 ~vV~SpgI~~~--------~p~---~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 66 VVVYSSSISKD--------NVE---YLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred EEEECCCcCCC--------CHH---HHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 88776332221 222 222221 11 22233335777777776666554 56777764
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=50.92 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.4
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRI 39 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
+|.|+|. |++|..++..|.++ |++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889987 99999999999998 99999999998754
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.16 Score=50.08 Aligned_cols=71 Identities=21% Similarity=0.400 Sum_probs=53.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|..+ |..|+.+... |.++.+..+.||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 478999999999988 8899877531 235566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++-|-.- . ..++++|++||+.+
T Consensus 205 IvV~AvGkp~~i---------~-----------~~~vk~GavVIDvG 231 (288)
T PRK14171 205 IVVAAIGSPLKL---------T-----------AEYFNPESIVIDVG 231 (288)
T ss_pred EEEEccCCCCcc---------C-----------HHHcCCCCEEEEee
Confidence 999999865211 1 24578999998743
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.08 Score=51.13 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=35.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAW 42 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l 42 (480)
+|+|.|+|+ |.+|..++..|+++ |++|+++.+++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 578999995 99999999999998 99999999998876554
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.29 Score=48.51 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=60.5
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
.++-++++++|.|+|=|- .-..+|+..|.++|+.|.+....-
T Consensus 151 ~~~i~l~Gk~vvVIGrS~---------iVGkPla~lL~~~~atVtv~hs~T----------------------------- 192 (297)
T PRK14186 151 SQQIDIAGKKAVVVGRSI---------LVGKPLALMLLAANATVTIAHSRT----------------------------- 192 (297)
T ss_pred HhCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344578999999999532 567889999999999999875432
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|- +.+.+ ++..+|||.-
T Consensus 193 -------~~l~~~~~~ADIvIsAvGkp~~i--~~~~i----k~gavVIDvG 230 (297)
T PRK14186 193 -------QDLASITREADILVAAAGRPNLI--GAEMV----KPGAVVVDVG 230 (297)
T ss_pred -------CCHHHHHhhCCEEEEccCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566789999999999999984 43334 3456999975
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.087 Score=55.83 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=56.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH----hcC------CCEEEecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ----CRG------KNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~----~~~------~~l~~t~d 71 (480)
.||+|||.|.-|+..|..|+++ .|++|++||+.+.---.++-|..|.+ +....+... ... +++.+..|
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~D 117 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGVD 117 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecCc
Confidence 4799999999999999977643 28999999998766555555554443 333333221 111 23444443
Q ss_pred --HHHHhhcCCEEEEEccCC
Q 011650 72 --VEKHVREANIVFVSVNTP 89 (480)
Q Consensus 72 --~~~a~~~aDvVii~Vptp 89 (480)
.++..+..|.||+++...
T Consensus 118 vt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 118 LKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred cCHHHHHhcCCEEEEEcCCC
Confidence 566557899999998753
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.092 Score=58.13 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+||+|||.|..|+..|..|++. |++|++|+..+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 4799999999999999999998 999999998764
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.071 Score=54.21 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=35.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
.||.|||+|.+|.++|..|+.. |. +++++|.+.-....|++.
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~RQ 67 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQRQ 67 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCcc
Confidence 4799999999999999999998 77 899999986555555543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.28 Score=48.53 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=75.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC-----CCCcCc
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS-----PSTINQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 399 (480)
++|+|+|... ....++..|...|.+|.+||+.-...+........ ..+.-.+..... .....+
T Consensus 4 ~kIaViGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGV----------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAK--LADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCH----------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH--HHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999743 78889999999999999999864321111100000 000000000000 011246
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhc---CcEEEEe
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKI---GFIVYSI 465 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~---g~~y~~i 465 (480)
+++.+++.++++++|.||+++.-+ +++.--++++....++..+|.+....+....+.+. .-++.|+
T Consensus 72 i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~ 141 (287)
T PRK08293 72 ITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLAL 141 (287)
T ss_pred eEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEE
Confidence 778889999999999999998754 23433345666666655566576666665444432 3345554
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.18 Score=49.53 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=52.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ +..|+.+... |.++++..+.||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987431 335566678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
++|.+++-|-. .. ..++++|++||+.
T Consensus 203 IvI~AvGk~~~---------i~-----------~~~ik~gaiVIDv 228 (282)
T PRK14182 203 ILVAAIGKAEL---------VK-----------GAWVKEGAVVIDV 228 (282)
T ss_pred EEEEecCCcCc---------cC-----------HHHcCCCCEEEEe
Confidence 99999986521 11 2457889999874
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.25 Score=48.81 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|+|+|-+- .-...++..|.++|+.|.+.+-..
T Consensus 152 ~~i~l~Gk~vvVIGrs~---------~VG~pla~lL~~~gatVtv~~s~t------------------------------ 192 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSH---------IVGQPVSKLLLQKNASVTILHSRS------------------------------ 192 (286)
T ss_pred cCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCCc------------------------------
Confidence 34468999999999532 468899999999999999876321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
.++.+.++.||.||.++..+.|- ..+. .++..+|||.-.-
T Consensus 193 ------~~l~~~~~~ADIVIsAvg~p~~i--~~~~----vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ------KDMASYLKDADVIVSAVGKPGLV--TKDV----VKEGAVIIDVGNT 232 (286)
T ss_pred ------hhHHHHHhhCCEEEECCCCCccc--CHHH----cCCCcEEEEcCCC
Confidence 24567789999999999999873 3333 3445699998653
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.2 Score=46.78 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..+.+++|+|+|. +.-+..+++.|...| .+|.++|.-.... .+...++.
T Consensus 176 ~~l~~~~VlViGa----------G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~------------------- 226 (417)
T TIGR01035 176 GSLKGKKALLIGA----------GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG------------------- 226 (417)
T ss_pred CCccCCEEEEECC----------hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-------------------
Confidence 3578899999996 347888999999999 7899999865432 23332210
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcC---CCCEEEEcCCC--CChHHHhhcCcEEEEec
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQ---KPAFVFDGRNI--LDVEKLRKIGFIVYSIG 466 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~---~~~~i~D~~~~--~~~~~~~~~g~~y~~iG 466 (480)
..+ ..+++.+++.++|+||.+|..++.- ++.+.+...+. .|.+++|...- ++++...-.|..++.+-
T Consensus 227 ~~i-~~~~l~~~l~~aDvVi~aT~s~~~i-i~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~vD 298 (417)
T TIGR01035 227 EAV-KFEDLEEYLAEADIVISSTGAPHPI-VSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDVD 298 (417)
T ss_pred eEe-eHHHHHHHHhhCCEEEECCCCCCce-EcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEHH
Confidence 111 1246778889999999999887653 45555555443 35699999742 34433222366666553
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.77 Score=46.07 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=56.5
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHH-Hc-CCCCC--CCCC-hHHHHHHhcCCCEEEecCHHHHh
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAW-NS-DQLPI--YEPG-LEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l-~~-g~~~~--~e~~-l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||++||.|.||..+....++ .+|.+|..+ |++.....+. .+ +.... .|.. ....-..+..+++.+|+|.+..+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~-m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIAS-MPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred EEEEecccccchHHHHHHhh-cCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 79999999999999999886 479998765 7776554432 22 22211 1111 12222235568899999987754
Q ss_pred h--cCCEEEEEccCC
Q 011650 77 R--EANIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
. ..|+||-++.-|
T Consensus 98 ~~~~IdvIIdATG~p 112 (438)
T COG4091 98 ANDLIDVIIDATGVP 112 (438)
T ss_pred cCCcceEEEEcCCCc
Confidence 3 457888887655
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.34 Score=47.79 Aligned_cols=101 Identities=10% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CeEEEECCCCCh--hHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK----ARLSIYDPQVPQ--EHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..+|+|+|+ ...+..+++.|.+.| .+|.++|+.... +.+...+
T Consensus 3 ~mkI~~IG~----------G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~--------------------- 51 (279)
T PRK07679 3 IQNISFLGA----------GSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY--------------------- 51 (279)
T ss_pred CCEEEEECc----------cHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc---------------------
Confidence 458999996 458889999999988 789999975321 1111111
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
+++...+..++++.+|+||+++.-+.+.+. .+.+....++..+|||.-+=++.+.+++
T Consensus 52 -g~~~~~~~~e~~~~aDvVilav~p~~~~~v-l~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 52 -GVKGTHNKKELLTDANILFLAMKPKDVAEA-LIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred -CceEeCCHHHHHhcCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 345567788888999999999998877663 3455555554459999855557776665
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.17 Score=51.00 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+||| ...+|.|+|..|.++ |..|+++... |.|+++..+.||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++-|---.+ ..+++|++||+..+
T Consensus 260 IvIsAvGkp~~v~~--------------------d~vk~GavVIDVGi 287 (345)
T PLN02897 260 IVIAAAGIPNLVRG--------------------SWLKPGAVVIDVGT 287 (345)
T ss_pred EEEEccCCcCccCH--------------------HHcCCCCEEEEccc
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.37 Score=48.28 Aligned_cols=72 Identities=21% Similarity=0.383 Sum_probs=54.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCC--CCeEE-EEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 3 KICCIGAGYVGGPTMAVIALKCP--SIEVA-VVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~--G~~V~-~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||+|+|.|+.-++..|... | +|.|+ +.|++.++..++.+.. .| +.++..++++.++
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~-p~s~~~Ivava~~s~~~A~~fAq~~~~~----------------~~k~y~syEeLakd 70 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTL-PESNHQIVAVADPSLERAKEFAQRHNIP----------------NPKAYGSYEELAKD 70 (351)
T ss_pred EEEEeehhHHHHHHHHHhccC-cccCcEEEEEecccHHHHHHHHHhcCCC----------------CCccccCHHHHhcC
Confidence 799999999999999888653 4 78766 4689888887776532 21 2456677888665
Q ss_pred -cCCEEEEEccCCCC
Q 011650 78 -EANIVFVSVNTPTK 91 (480)
Q Consensus 78 -~aDvVii~Vptp~~ 91 (480)
.+|+|.|..|+|.+
T Consensus 71 ~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 71 PEVDVVYISTPNPQH 85 (351)
T ss_pred CCcCEEEeCCCCccH
Confidence 45999999998864
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.82 Score=42.79 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=68.8
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+.++++++|+|.|+. .-...+++.|.+.|++|.++|.....-. ....+
T Consensus 23 ~~~l~gk~v~I~G~G----------~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~--------------------- 71 (200)
T cd01075 23 TDSLEGKTVAVQGLG----------KVGYKLAEHLLEEGAKLIVADINEEAVARAAELF--------------------- 71 (200)
T ss_pred CCCCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---------------------
Confidence 457899999999984 3678899999999999999998643211 11111
Q ss_pred CceEEecChhhhcc-cCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC-CC----hHHHhhcCcEE
Q 011650 398 NQVIVASDAYEATK-DSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI-LD----VEKLRKIGFIV 462 (480)
Q Consensus 398 ~~~~~~~~~~~a~~-~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~-~~----~~~~~~~g~~y 462 (480)
+.+..++ ++.+. .+|+++-++-... ++-+.+ +.++.+ +|+++-|- +. .+.+++.|+.|
T Consensus 72 -g~~~v~~-~~l~~~~~Dv~vp~A~~~~---I~~~~~-~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~ 135 (200)
T cd01075 72 -GATVVAP-EEIYSVDADVFAPCALGGV---INDDTI-PQLKAK-AIAGAANNQLADPRHGQMLHERGILY 135 (200)
T ss_pred -CCEEEcc-hhhccccCCEEEecccccc---cCHHHH-HHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE
Confidence 1223322 33333 7999986655443 555555 445655 89999996 22 23455778888
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.046 Score=56.43 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=34.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|.| .|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999998 5999999999999861 499999999877665544
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.34 Score=47.68 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|+|+|=+- .-..+|+..|.++++.|.+.+-..
T Consensus 151 y~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------ 191 (282)
T PRK14166 151 YEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT------------------------------ 191 (282)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34467999999999543 567789999999999999765321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|- +.+.+ ++.++|||.-
T Consensus 192 ------~nl~~~~~~ADIvIsAvGkp~~i--~~~~v----k~GavVIDvG 229 (282)
T PRK14166 192 ------KDLSLYTRQADLIIVAAGCVNLL--RSDMV----KEGVIVVDVG 229 (282)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566789999999999999984 43333 3456899975
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.31 Score=47.08 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=44.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|.|+ |.||..+...+... +++++. ++|+...... .+ +..++.. ...-.+.+++|+..+..+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~~~~--g~--------d~ge~~g-~~~~gv~v~~~~~~~~~~ 69 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGSLSL--GS--------DAGELAG-LGLLGVPVTDDLLLVKAD 69 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCcccc--cc--------chhhhcc-ccccCceeecchhhcccC
Confidence 689999998 99999999988875 466654 5777653210 00 0000000 000123456666666778
Q ss_pred CCEEEEE
Q 011650 79 ANIVFVS 85 (480)
Q Consensus 79 aDvVii~ 85 (480)
+|++|=-
T Consensus 70 ~DV~IDF 76 (266)
T COG0289 70 ADVLIDF 76 (266)
T ss_pred CCEEEEC
Confidence 9998754
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.37 Score=47.36 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=59.8
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-.-
T Consensus 152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~AtVt~chs~T------------------------------ 192 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSN---------IVGKPVAQLLLNENATVTICHSKT------------------------------ 192 (278)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 44468999999999543 567889999999999999876321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++.++|||.
T Consensus 193 ------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gavVIDv 229 (278)
T PRK14172 193 ------KNLKEVCKKADILVVAIGRPKF--IDEEYV----KEGAIVIDV 229 (278)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCc--cCHHHc----CCCcEEEEe
Confidence 2456678999999999999998 444334 345699997
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.15 Score=41.36 Aligned_cols=88 Identities=15% Similarity=0.222 Sum_probs=58.7
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCC---CeEE-EECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDK---ARLS-IYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g---~~V~-~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
||+|+|. ...+..|++.|.+.| .+|. ++++.-.... ....+ .+
T Consensus 1 kI~iIG~----------G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~~ 48 (96)
T PF03807_consen 1 KIGIIGA----------GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------GV 48 (96)
T ss_dssp EEEEEST----------SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------TT
T ss_pred CEEEECC----------CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------cc
Confidence 6788885 357899999999999 9999 5588644322 22222 13
Q ss_pred EEec-ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 401 IVAS-DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~~~-~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.... +..++++.+|+|+++++...+.++-. .+....+ .++|||.-
T Consensus 49 ~~~~~~~~~~~~~advvilav~p~~~~~v~~-~i~~~~~-~~~vis~~ 94 (96)
T PF03807_consen 49 QATADDNEEAAQEADVVILAVKPQQLPEVLS-EIPHLLK-GKLVISIA 94 (96)
T ss_dssp EEESEEHHHHHHHTSEEEE-S-GGGHHHHHH-HHHHHHT-TSEEEEES
T ss_pred ccccCChHHhhccCCEEEEEECHHHHHHHHH-HHhhccC-CCEEEEeC
Confidence 3344 78999999999999999998877432 3333333 44888864
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.083 Score=53.73 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=40.2
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEE---EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-CHHHHhh
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVA---VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-DVEKHVR 77 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~---~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (480)
||+||| .|++|.-+...|+++ +|++. .+....+.-+.+. ..+ ..+.+.+ +.+ .+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~~-~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKIE-SFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCChH-Hhc
Confidence 689999 799999999999886 66643 4434322111111 001 1122221 333 468
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.28 Score=49.75 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=32.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|+|.|.|. |++|..++..|+++ |++|++++++.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCchh
Confidence 367999997 99999999999998 9999999997654
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.37 Score=47.41 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=60.8
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+..+-++++++|.|+|=+. .-..+|+..|.++|+.|.+.+-.-
T Consensus 150 ~~y~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~ATVt~chs~T---------------------------- 192 (282)
T PRK14180 150 REYGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRFT---------------------------- 192 (282)
T ss_pred HHhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEEcCCC----------------------------
Confidence 3344578999999999543 567889999999999998865322
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+-++.||.||.++.++.| +..+.+ ++.++|||.-
T Consensus 193 --------~dl~~~~k~ADIvIsAvGkp~~--i~~~~v----k~gavVIDvG 230 (282)
T PRK14180 193 --------TDLKSHTTKADILIVAVGKPNF--ITADMV----KEGAVVIDVG 230 (282)
T ss_pred --------CCHHHHhhhcCEEEEccCCcCc--CCHHHc----CCCcEEEEec
Confidence 2455567899999999999998 444344 3456999974
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.38 Score=47.34 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=59.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|+.|.+..-.-
T Consensus 151 ~~i~l~Gk~vvViGrS~---------~VG~Pla~lL~~~~AtVti~hs~T------------------------------ 191 (281)
T PRK14183 151 YEIDVKGKDVCVVGASN---------IVGKPMAALLLNANATVDICHIFT------------------------------ 191 (281)
T ss_pred cCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999432 467889999999999998864321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.+++|-. .+.+ ++..+|||.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvGkp~~i~--~~~v----k~gavvIDvG 229 (281)
T PRK14183 192 ------KDLKAHTKKADIVIVGVGKPNLIT--EDMV----KEGAIVIDIG 229 (281)
T ss_pred ------cCHHHHHhhCCEEEEecCcccccC--HHHc----CCCcEEEEee
Confidence 245667899999999999999844 3333 3456899975
|
|
| >PTZ00245 ubiquitin activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.44 Score=45.95 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=69.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHH------HHHhcCCCEEEecCH--H
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEV------VKQCRGKNLFFSTDV--E 73 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~------~~~~~~~~l~~t~d~--~ 73 (480)
+|.|||+|.+|.++|.+|+.. |. +++++|-+.-....+++....-.+.|..+. +++. +..+++..-. -
T Consensus 28 rVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eL-NP~V~V~~i~~rl 104 (287)
T PTZ00245 28 SVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRL-NPHVSVYDAVTKL 104 (287)
T ss_pred eEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHH-CCCcEEEEccccc
Confidence 799999999999999999998 65 799999877666666654322212221111 1111 1223322111 1
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+.....++++++..+ ++++.+.+...++.-.+++..+|..+-|...
T Consensus 105 d~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~~ 150 (287)
T PTZ00245 105 DGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLAL 150 (287)
T ss_pred CCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhhH
Confidence 113466777777542 3566777777777667888888877666443
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.18 Score=53.56 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.13 Score=56.04 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=29.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|..|+..|..|++. |++|+++|..+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~ 170 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGP 170 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4799999999999999999998 99999999643
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.41 Score=47.12 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
..+-+++|++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 152 ~y~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVt~chs~T----------------------------- 193 (284)
T PRK14177 152 EYGIDVTGKNAVVVGRSP---------ILGKPMAMLLTEMNATVTLCHSKT----------------------------- 193 (284)
T ss_pred HhCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-----------------------------
Confidence 344578999999999543 567889999999999999976432
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|- ..+.+ ++.++|||.-
T Consensus 194 -------~~l~~~~~~ADIvIsAvGk~~~i--~~~~i----k~gavVIDvG 231 (284)
T PRK14177 194 -------QNLPSIVRQADIIVGAVGKPEFI--KADWI----SEGAVLLDAG 231 (284)
T ss_pred -------CCHHHHHhhCCEEEEeCCCcCcc--CHHHc----CCCCEEEEec
Confidence 24566689999999999999984 43334 3456999974
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.74 Score=48.99 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999653
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.18 Score=48.43 Aligned_cols=42 Identities=21% Similarity=0.504 Sum_probs=35.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
.||.|+|+|.+|..+|..|+.. |. +++++|.+.-....+++.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq 70 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA--GVGRILLIDEQTPELSNLNRQ 70 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCccChhhhccc
Confidence 3799999999999999999998 64 799999887666666654
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.19 Score=49.66 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=49.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-----
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV----- 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----- 76 (480)
.++|+|||.+|++.+.-....+ --+++++|+|+++.+..++ |...+..|. .....+.+.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~-------------d~~~~i~evi~EmTd 260 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGATEFINPK-------------DLKKPIQEVIIEMTD 260 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcceecChh-------------hccccHHHHHHHHhc
Confidence 5899999999999887766652 3589999999999998776 333332222 0111222322
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.+.|+-|.|+..
T Consensus 261 gGvDysfEc~G~ 272 (375)
T KOG0022|consen 261 GGVDYSFECIGN 272 (375)
T ss_pred CCceEEEEecCC
Confidence 378999999874
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.42 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=32.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCH---HHHHHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISV---PRINAWN 43 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~---~~v~~l~ 43 (480)
++.|+|+|-.|.+++..|+.. |.. |++++|++ ++.+++.
T Consensus 128 ~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 588999999999999999988 875 99999996 5555544
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.081 Score=60.98 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=30.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|||.|.-|++.|..|+++ ||+|++||...
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~ 339 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFH 339 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCC
Confidence 5899999999999999999998 99999999864
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.21 Score=50.52 Aligned_cols=72 Identities=24% Similarity=0.422 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.||| ...+|.|+|..|.++ +..|+.+... |.|+++.++.||
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR---------------------------------TKNPEEITREAD 276 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCeEEEeCCC---------------------------------CCCHHHHHhhCC
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++-|---.. ..+++|++||+..+
T Consensus 277 IVIsAvGkp~~i~~--------------------d~vK~GAvVIDVGI 304 (364)
T PLN02616 277 IIISAVGQPNMVRG--------------------SWIKPGAVVIDVGI 304 (364)
T ss_pred EEEEcCCCcCcCCH--------------------HHcCCCCEEEeccc
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.24 Score=55.01 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=31.1
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|||.|.| +|++|..++..|.++ ||+|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChh
Confidence 7999999 699999999999998 999999998754
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.056 Score=54.22 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=29.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|+|||.|..|+.+|..|+++ |++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 3799999999999999999999 999999998753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.57 Score=44.83 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCCEEEEEccCCCCcCCCCCCCCCchHHHH
Q 011650 29 VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REANIVFVSVNTPTKTQGLGAGKAADLTYWE 107 (480)
Q Consensus 29 V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~ 107 (480)
|.++|+++++.+.+.+.. +....+|+++.+ .+.|+|++|.|+..+
T Consensus 5 vaV~D~~~e~a~~~a~~~------------------g~~~~~d~~eLl~~~vDaVviatp~~~H---------------- 50 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------------------GAKIVSDFDEFLPEDVDIVVEAASQEAV---------------- 50 (229)
T ss_pred EEEECCCHHHHHHHHHHh------------------CCceECCHHHHhcCCCCEEEECCChHHH----------------
Confidence 557999999988776521 134567888765 579999999886432
Q ss_pred HHHHHHHhhCCCCcEEEEecCCCccc---HHHHHHHHHhhcCCCceEEe
Q 011650 108 SAARMIADVSKSDKIVVEKSTVPVKT---AEAIEKILMHNSRGINFQIL 153 (480)
Q Consensus 108 ~~~~~i~~~l~~~~iVi~~STv~~gt---~~~l~~~l~~~~~g~~~~v~ 153 (480)
.+...+.++.|+-|++.|.....+ .+++.+..++. |..+++.
T Consensus 51 --~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 51 --KEYAEKILKNGKDLLIMSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred --HHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 222334455566565566543333 34444444443 3455554
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.3 Score=47.74 Aligned_cols=129 Identities=7% Similarity=0.019 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-eEEEECCCCChh-HHHhhhhcccCCCCC
Q 011650 309 RFVNRVVSSMFN-TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA-RLSIYDPQVPQE-HIQRDLQMNKFDWDH 385 (480)
Q Consensus 309 ~~~~~~~~~~~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~-~~~~~~~~~~~~~~~ 385 (480)
-.++...+.++. ++.+++|+|+|.. ..+..+++.|...|+ +|.++++..... .+...++
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG----------~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~-------- 311 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAG----------KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP-------- 311 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCH----------HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--------
Confidence 334444444432 4789999999963 478888999999997 699999875542 2222221
Q ss_pred CCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhc------CCCCEEEEcCC--CCChHHHhh
Q 011650 386 PIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNM------QKPAFVFDGRN--ILDVEKLRK 457 (480)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~------~~~~~i~D~~~--~~~~~~~~~ 457 (480)
+..-.+...+++.+++.++|+||.+|.-+.+- +..+.+...+ .+|.++||.-- =+++.--.-
T Consensus 312 ---------g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv-I~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l 381 (519)
T PLN00203 312 ---------DVEIIYKPLDEMLACAAEADVVFTSTSSETPL-FLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSEL 381 (519)
T ss_pred ---------CCceEeecHhhHHHHHhcCCEEEEccCCCCCe-eCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccC
Confidence 00001112346778899999999999655442 3444444433 14669999743 233332222
Q ss_pred cCcEEEEe
Q 011650 458 IGFIVYSI 465 (480)
Q Consensus 458 ~g~~y~~i 465 (480)
.|..++-|
T Consensus 382 ~~v~lydi 389 (519)
T PLN00203 382 ESARVYNV 389 (519)
T ss_pred CCCeEEEe
Confidence 35666555
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.24 Score=48.89 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.. + +..|+.++.+ |.++++.+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~--~AtVt~~hs~---------------------------------t~~l~~~~ 202 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFA--NATVTVCHSR---------------------------------TPDLAEEC 202 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccC--CCEEEEEeCC---------------------------------chhHHHHH
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.||+||.+++.|..- -..++++|++||+.+.
T Consensus 203 ~~ADIVI~AvG~p~li--------------------~~~~vk~GavVIDVGi 234 (286)
T PRK14184 203 READFLFVAIGRPRFV--------------------TADMVKPGAVVVDVGI 234 (286)
T ss_pred HhCCEEEEecCCCCcC--------------------CHHHcCCCCEEEEeee
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.22 Score=55.34 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|..|++.|..|++. |++|++||..+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~ 360 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHP 360 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4799999999999999999998 99999999864
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.46 Score=47.01 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=59.7
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 154 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVt~chs~T------------------------------ 194 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSN---------IVGKPMACLLLGENCTVTTVHSAT------------------------------ 194 (294)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHhhCCCEEEEeCCCC------------------------------
Confidence 34568999999999543 567889999999999999866432
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDG 446 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 446 (480)
.++.+.++.||.||.++..+.| ++.+.+ ++..+|||.
T Consensus 195 ------~~l~~~~~~ADIvVsAvGkp~~--i~~~~i----k~gaiVIDV 231 (294)
T PRK14187 195 ------RDLADYCSKADILVAAVGIPNF--VKYSWI----KKGAIVIDV 231 (294)
T ss_pred ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEe
Confidence 2456678999999999999998 444344 345689997
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.4 Score=47.21 Aligned_cols=115 Identities=12% Similarity=0.195 Sum_probs=76.9
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----eEEEECCCCChhHHHh-hhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA----RLSIYDPQVPQEHIQR-DLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+|+|+|+. ..+..+++.|.+.|. +|.+||+-...-+... .+ +
T Consensus 3 ~~IgfIG~G----------~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~----------------------g 50 (272)
T PRK12491 3 KQIGFIGCG----------NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY----------------------G 50 (272)
T ss_pred CeEEEECcc----------HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc----------------------C
Confidence 479999974 488899999998874 6999998543211111 11 2
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCccccccCCCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAV 479 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~ 479 (480)
+..+++..+.++++|+|++++.-..+.+. ++.+....++..+|+|.-.=++-+.+++. +| +..++.+-||..
T Consensus 51 ~~~~~~~~e~~~~aDiIiLavkP~~~~~v-l~~l~~~~~~~~lvISi~AGi~i~~l~~~------l~-~~~~vvR~MPN~ 122 (272)
T PRK12491 51 ITITTNNNEVANSADILILSIKPDLYSSV-INQIKDQIKNDVIVVTIAAGKSIKSTENE------FD-RKLKVIRVMPNT 122 (272)
T ss_pred cEEeCCcHHHHhhCCEEEEEeChHHHHHH-HHHHHHhhcCCcEEEEeCCCCcHHHHHHh------cC-CCCcEEEECCCh
Confidence 45566777888999999999996655542 24455444444599999888887777753 12 123456666643
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.45 Score=46.94 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=59.6
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++.+++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 158 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------ 198 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSN---------VVGKPMAAMLLNRNATVSVCHVFT------------------------------ 198 (287)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCEEEEEeccC------------------------------
Confidence 44468999999999432 357889999999999999977321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..|.|- ..+ .+++..+|||.-
T Consensus 199 ------~~l~~~~~~ADIvv~AvG~p~~i--~~~----~vk~gavVIDvG 236 (287)
T PRK14176 199 ------DDLKKYTLDADILVVATGVKHLI--KAD----MVKEGAVIFDVG 236 (287)
T ss_pred ------CCHHHHHhhCCEEEEccCCcccc--CHH----HcCCCcEEEEec
Confidence 24566789999999999999974 333 334556899975
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.061 Score=55.55 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999998 999999998753
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.46 Score=46.89 Aligned_cols=79 Identities=9% Similarity=0.027 Sum_probs=60.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 153 ~~i~l~Gk~vvViGrs~---------iVG~Pla~lL~~~~atVtv~hs~T------------------------------ 193 (285)
T PRK10792 153 YGIDTYGLNAVVVGASN---------IVGRPMSLELLLAGCTVTVCHRFT------------------------------ 193 (285)
T ss_pred cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCeEEEEECCC------------------------------
Confidence 34568899999999432 357889999999999999975321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|- .. +.+++..+|||.-
T Consensus 194 ------~~l~~~~~~ADIvi~avG~p~~v--~~----~~vk~gavVIDvG 231 (285)
T PRK10792 194 ------KNLRHHVRNADLLVVAVGKPGFI--PG----EWIKPGAIVIDVG 231 (285)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcccc--cH----HHcCCCcEEEEcc
Confidence 24667789999999999999973 33 3345567999986
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.091 Score=40.09 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.2
Q ss_pred EECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.-|+..|..|+++ |++|++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999998 99999999864
|
... |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.063 Score=55.98 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=31.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|||.|..|+.+|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999998 999999998764
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.074 Score=55.07 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
..|.|||.|.+|+++|..|++..+|++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999865689999999864
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.38 Score=47.47 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=58.9
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++-++++++|.|+|=+- .-..+++..|.++|+.|.+.+-.-
T Consensus 151 ~~i~l~Gk~vvVvGrs~---------~VG~Pla~lL~~~gAtVtv~hs~t------------------------------ 191 (285)
T PRK14191 151 YHIEIKGKDVVIIGASN---------IVGKPLAMLMLNAGASVSVCHILT------------------------------ 191 (285)
T ss_pred hCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCEEEEEeCCc------------------------------
Confidence 34467899999999432 467889999999999999874221
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|-. .+.+ ++..+|+|.-
T Consensus 192 ------~~l~~~~~~ADIvV~AvG~p~~i~--~~~v----k~GavVIDvG 229 (285)
T PRK14191 192 ------KDLSFYTQNADIVCVGVGKPDLIK--ASMV----KKGAVVVDIG 229 (285)
T ss_pred ------HHHHHHHHhCCEEEEecCCCCcCC--HHHc----CCCcEEEEee
Confidence 234567899999999999999844 3333 4456899975
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.49 Score=46.95 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=60.2
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-..
T Consensus 161 ~~i~l~Gk~vvVIGRS~---------iVGkPla~lL~~~~ATVtvchs~T------------------------------ 201 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSN---------IVGLPVSLLLLKADATVTVVHSRT------------------------------ 201 (299)
T ss_pred hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34578999999999533 567889999999999999975431
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++..+.|-.-+ .+ ++.++|||.-
T Consensus 202 ------~nl~~~~~~ADIvv~AvGk~~~i~~~--~v----k~gavVIDvG 239 (299)
T PLN02516 202 ------PDPESIVREADIVIAAAGQAMMIKGD--WI----KPGAAVIDVG 239 (299)
T ss_pred ------CCHHHHHhhCCEEEEcCCCcCccCHH--Hc----CCCCEEEEee
Confidence 24677789999999999999874422 33 4456899975
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.31 Score=48.02 Aligned_cols=74 Identities=19% Similarity=0.405 Sum_probs=0.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCP--SIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+||| ...+|.|+|..|.++++ +..|+.+... |.++++.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------------------T~~l~~~~~~ 200 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------------------SENLTEILKT 200 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------------------CCCHHHHHhh
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||+||.+++-|-.- =..++++|++||+..+
T Consensus 201 ADIvV~AvG~p~~i--------------------~~~~ik~GavVIDvGi 230 (287)
T PRK14181 201 ADIIIAAIGVPLFI--------------------KEEMIAEKAVIVDVGT 230 (287)
T ss_pred CCEEEEccCCcCcc--------------------CHHHcCCCCEEEEecc
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.17 Score=50.13 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=32.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRIN 40 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
|+|-|.| .|++|..++..|.++ ||+|+++|+......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCcccc
Confidence 5689999 599999999999998 999999999765543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.2 Score=49.88 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCh--hHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCc
Q 011650 346 AIDVCKGLMGDKARLSIYDPQVPQ--EHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
...+++.|.+.|++|.+||+.-.. .+.+..+. ..+...++++.++++++|+|+++++-+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~La-------------------eaGA~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVE-------------------DAGVKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHH-------------------HCCCeecCCHHHHHhCCCEEEEecCCH
Confidence 568999999999999999975432 11111111 124567788999999999999999876
Q ss_pred cc-ccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 424 EF-KNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
+- +++ ...+...+++..+|||+.-+-+
T Consensus 93 aaV~eV-l~GLaa~L~~GaIVID~STIsP 120 (341)
T TIGR01724 93 KGTFSI-ARTIIEHVPENAVICNTCTVSP 120 (341)
T ss_pred HHHHHH-HHHHHhcCCCCCEEEECCCCCH
Confidence 52 233 2456666666779999965543
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.53 Score=46.40 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh--CCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMG--DKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSP 394 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~--~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (480)
..+-++++++|.|+|=+- .-..+|+..|.+ +++.|.+..-.-
T Consensus 151 ~~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~~~atVtvchs~T--------------------------- 194 (284)
T PRK14193 151 RYDVELAGAHVVVIGRGV---------TVGRPIGLLLTRRSENATVTLCHTGT--------------------------- 194 (284)
T ss_pred HhCCCCCCCEEEEECCCC---------cchHHHHHHHhhccCCCEEEEeCCCC---------------------------
Confidence 344567899999999643 567889999988 799998865321
Q ss_pred CCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 395 STINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 395 ~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.| +..+.+ ++.++|||.-
T Consensus 195 ---------~~l~~~~k~ADIvV~AvGkp~~--i~~~~i----k~GavVIDvG 232 (284)
T PRK14193 195 ---------RDLAAHTRRADIIVAAAGVAHL--VTADMV----KPGAAVLDVG 232 (284)
T ss_pred ---------CCHHHHHHhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence 2467778999999999999998 444344 3456999975
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.32 Score=48.30 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=51.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~----~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
++|+||| ...+|.|+|..|.+ + +..|+....+ +.++++.+
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~---------------------------------t~~l~~~~ 204 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA---------------------------------TKDIPSYT 204 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC---------------------------------chhHHHHH
Confidence 4799999 57899999999987 4 6788877642 23456678
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+.||++|.+++.|-. .. ..++++|++||+.+
T Consensus 205 ~~ADIvI~Avg~~~l---------i~-----------~~~vk~GavVIDVg 235 (295)
T PRK14174 205 RQADILIAAIGKARF---------IT-----------ADMVKPGAVVIDVG 235 (295)
T ss_pred HhCCEEEEecCccCc---------cC-----------HHHcCCCCEEEEee
Confidence 999999999976511 11 13458899998754
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.48 Score=41.88 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=68.4
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
...++++|+|+|.. ..+..+++.|.+.| .+|.++|+..... .....++. ..
T Consensus 15 ~~~~~~~i~iiG~G----------~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-----------------~~ 67 (155)
T cd01065 15 IELKGKKVLILGAG----------GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-----------------LG 67 (155)
T ss_pred CCCCCCEEEEECCc----------HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-----------------cc
Confidence 34678899999953 36888999999886 7899999864432 22222210 00
Q ss_pred CceEEecChhhhcccCcEEEEeecCccc--ccccHHHHHhhcCCCCEEEEcCCCCCh-----HHHhhcCcEE
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEF--KNLDYQKIYNNMQKPAFVFDGRNILDV-----EKLRKIGFIV 462 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~~~~~~-----~~~~~~g~~y 462 (480)
-.. ...+..+.++++|+||++|+-... .+.... ...+++..+|+|.-.. +. +.+++.|..+
T Consensus 68 ~~~-~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~-~~~~~l~~~~~~~g~~~ 135 (155)
T cd01065 68 IAI-AYLDLEELLAEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYN-PLETPLLKEARALGAKT 135 (155)
T ss_pred cce-eecchhhccccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcC-CCCCHHHHHHHHCCCce
Confidence 001 234566778999999999988764 111111 1123455689999554 33 3445566654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.54 Score=46.40 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+-++++++|.|+|=+- .-..+|+..|.++|+.|.+.+-.-
T Consensus 153 y~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~ATVtichs~T------------------------------ 193 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSN---------IVGKPLSALLLKENCSVTICHSKT------------------------------ 193 (288)
T ss_pred hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence 34468999999999543 467789999999999999865321
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.||.++.++.|-. .+.+ ++.++|||.-
T Consensus 194 ------~~L~~~~~~ADIvV~AvGkp~~i~--~~~v----k~GavVIDvG 231 (288)
T PRK14171 194 ------HNLSSITSKADIVVAAIGSPLKLT--AEYF----NPESIVIDVG 231 (288)
T ss_pred ------CCHHHHHhhCCEEEEccCCCCccC--HHHc----CCCCEEEEee
Confidence 245667899999999999998754 3333 4456899975
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.07 Score=55.66 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
|||.|||.|.-|+++|..|+++ |+ +|+++++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999998 74 9999998754
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=2.2 Score=39.58 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=61.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHh----h
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHV----R 77 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~----~ 77 (480)
+|.-+|+|.-..++..... ..++.+|+++|++++.++..++..... ++ ..++.+ ..|..+.+ .
T Consensus 43 ~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred EEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcCC
Confidence 5778888772222222111 112468999999999888665421000 00 012222 23333322 3
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|.||+..... + +..+++.+...++++..++. .+....+.+++...+++.
T Consensus 111 ~~D~V~~~~~~~------------~---~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 111 KFDRIFIGGGSE------------K---LKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENI 161 (198)
T ss_pred CCCEEEECCCcc------------c---HHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHc
Confidence 589998864321 1 35567777788888665554 333445555666666554
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.086 Score=54.07 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|+|||.|.+|++.|..|++. |++|+++|..+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 5799999999999999999998 89999999765
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.083 Score=54.52 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|+++ |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 4899999999999999999998 999999998753
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.6 Score=43.28 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++++++|.|+|=+- .-..+|+..|.++|+.|.+.|=..-.. +.+ +..++|..|... +
T Consensus 58 ~~l~GK~vvVIGrS~---------iVGkPla~lL~~~~AtVti~~~~~~~~-~~~---------~~~~~hs~t~~~---~ 115 (197)
T cd01079 58 NRLYGKTITIINRSE---------VVGRPLAALLANDGARVYSVDINGIQV-FTR---------GESIRHEKHHVT---D 115 (197)
T ss_pred CCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEEecCcccc-ccc---------cccccccccccc---c
Confidence 367999999999543 567889999999999999987432111 000 001111111000 0
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
...++.+.++.||+||.++..++|+ +..+.+ ++.++|||.--
T Consensus 116 --~~~~l~~~~~~ADIVIsAvG~~~~~-i~~d~i----k~GavVIDVGi 157 (197)
T cd01079 116 --EEAMTLDCLSQSDVVITGVPSPNYK-VPTELL----KDGAICINFAS 157 (197)
T ss_pred --hhhHHHHHhhhCCEEEEccCCCCCc-cCHHHc----CCCcEEEEcCC
Confidence 0112567889999999999999984 333333 34568999754
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.12 Score=44.90 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.||+|+|+|.+|..+|..|++. |. +++++|.+.=..+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d~v~~~nl~ 43 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDDIVEPSNLN 43 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESSBB-GGGCC
T ss_pred CEEEEECcCHHHHHHHHHHHHh--CCCceeecCCcceeecccc
Confidence 4899999999999999999998 76 7999998653333333
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.078 Score=54.77 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|.|||.|..|+.+|..|++. |++|+++|+.+.
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4799999999999999999998 999999998764
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.072 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=32.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|||||-+|+.++..|++. |. +++++|-|.=...-|++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc--CCCEEEEECCCEeccccccc
Confidence 3799999999999999999998 54 89999987544444444
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.9 Score=43.47 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=35.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|.|+| .|.+|..+|..|+++ |++|+++++++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 7899998 499999999999998 999999999987766544
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.1 Score=52.31 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|+|||.|..|+.+|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999987
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.75 Score=47.88 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~ 35 (480)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|.+
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~--GakVVaVsD~~ 239 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK--GGKIVAVSDIT 239 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 4899999999999999999998 89988 55765
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.081 Score=54.16 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
+++|.|||.|..|+.+|..|++. |++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 35799999999999999999998 999999998753
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.083 Score=54.33 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|..|+++|..|++. |++|+++|..+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCCC
Confidence 67899999999999999999998 99999999753
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.69 Score=38.19 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCH---HHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDV---EKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~---~~a~~~ 78 (480)
+|--||+|.-..++ .+++..++.+|+++|.+++.++..++.. .+.....++++ ..|. .+....
T Consensus 4 ~vLDlGcG~G~~~~--~l~~~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~i~~~~~d~~~~~~~~~~ 70 (112)
T PF12847_consen 4 RVLDLGCGTGRLSI--ALARLFPGARVVGVDISPEMLEIARERA-----------AEEGLSDRITFVQGDAEFDPDFLEP 70 (112)
T ss_dssp EEEEETTTTSHHHH--HHHHHHTTSEEEEEESSHHHHHHHHHHH-----------HHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred EEEEEcCcCCHHHH--HHHhcCCCCEEEEEeCCHHHHHHHHHHH-----------HhcCCCCCeEEEECccccCcccCCC
Confidence 67889998844433 3444223899999999999988777521 00011234443 3344 112346
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
.|+|+..- ..... ..+......+++.+...++++..+++.
T Consensus 71 ~D~v~~~~-~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 71 FDLVICSG-FTLHF-------LLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEEEECS-GSGGG-------CCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECC-Ccccc-------ccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 78888764 11110 223345577888999999988877654
|
... |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.087 Score=54.52 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+++|.|||.|..|+.+|..|+++ |++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence 36799999999999999999999 9999999997
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.51 Score=45.05 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=59.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh---hc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV---RE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~ 78 (480)
++|.=|||| |.-++..+|+. |.+|++.|.+++-++..+..-. |.++. .... +.+.++.. ..
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~---e~gv~--------i~y~-~~~~edl~~~~~~ 124 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARL--GASVTGIDASEKPIEVAKLHAL---ESGVN--------IDYR-QATVEDLASAGGQ 124 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhh---hcccc--------ccch-hhhHHHHHhcCCC
Confidence 356678888 45788999998 9999999999998876653210 11110 0001 11223322 24
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
.|+|+.+ - .-+ ..+|. .+.++...+.++|+.+++. ||+-
T Consensus 125 FDvV~cm-E--VlE------Hv~dp---~~~~~~c~~lvkP~G~lf~-STin 163 (243)
T COG2227 125 FDVVTCM-E--VLE------HVPDP---ESFLRACAKLVKPGGILFL-STIN 163 (243)
T ss_pred ccEEEEh-h--HHH------ccCCH---HHHHHHHHHHcCCCcEEEE-eccc
Confidence 6766544 1 111 13443 4567788888999887765 6664
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.8 Score=38.52 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=64.9
Q ss_pred CEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 65 NLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
++.+|+|-.++++++|+|+.=+|-. +..||+ ++.+...+++|.+|....|+|.. ++.+++++.
T Consensus 126 g~~vttddreavedad~iitwlpkg--------~~qpdi------ikkfiddipegaivthactiptt---kf~kifed~ 188 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKG--------GVQPDI------IKKFIDDIPEGAIVTHACTIPTT---KFKKIFEDM 188 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCC--------CCCccH------HHHHHhcCCCCceEeeecccchH---HHHHHHHHh
Confidence 3678888888999999999998853 235553 66777788999999988888743 455666665
Q ss_pred cCCCceE-EeeCCcccccCccccccCCCCeEEE-EccCCcchHHHHHHHHHHHh
Q 011650 145 SRGINFQ-ILSNPEFLAEGTAINDLFKPDRVLI-GGRETPEGMKAIKALKDVYA 196 (480)
Q Consensus 145 ~~g~~~~-v~~~Pe~~~~G~a~~~~~~~~~vvi-G~~~~~~~~~~~~~~~~l~~ 196 (480)
++ .+.. ..|+|--..+ +.. .+.+ -|. .++++.+.+.++=+
T Consensus 189 gr-edlnvtsyhpg~vpe------mkg--qvyiaegy---aseeavn~lyelg~ 230 (343)
T COG4074 189 GR-EDLNVTSYHPGTVPE------MKG--QVYIAEGY---ASEEAVNALYELGE 230 (343)
T ss_pred Cc-cccceeccCCCCCcc------ccC--cEEEeccc---ccHHHHHHHHHHHH
Confidence 53 2222 3467644322 111 2333 233 25777776665543
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.76 Score=47.78 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|... -...++..|...|++|.++|........... .+.
T Consensus 192 ~l~Gk~VvViG~G~----------IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----------------------~G~ 239 (406)
T TIGR00936 192 LIAGKTVVVAGYGW----------CGKGIAMRARGMGARVIVTEVDPIRALEAAM----------------------DGF 239 (406)
T ss_pred CCCcCEEEEECCCH----------HHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----------------------cCC
Confidence 46899999999755 7888999999999999999543222111111 122
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC--C-CChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN--I-LDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~--~-~~~~~~~ 456 (480)
.+ .+.+++++++|++|..|..+.. ++ ......|++.++++..-. . +|.+.+.
T Consensus 240 ~v-~~leeal~~aDVVItaTG~~~v--I~-~~~~~~mK~GailiN~G~~~~eId~~aL~ 294 (406)
T TIGR00936 240 RV-MTMEEAAKIGDIFITATGNKDV--IR-GEHFENMKDGAIVANIGHFDVEIDVKALE 294 (406)
T ss_pred Ee-CCHHHHHhcCCEEEECCCCHHH--HH-HHHHhcCCCCcEEEEECCCCceeCHHHHH
Confidence 22 2567889999999999887553 23 235567887767776544 2 4444443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.17 Score=56.10 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++|+|||.|..|+..|..|++. |++|+++|.++.
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~ 227 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQ 227 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 5899999999999999999998 999999998754
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.45 Score=48.05 Aligned_cols=103 Identities=8% Similarity=0.011 Sum_probs=67.2
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
-+|+|+|+ .+....++..|.+.|.+|.+||+.....+.....+......+ .......+...+
T Consensus 5 m~I~iIG~----------G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~--------g~~~~~~~~~~~ 66 (328)
T PRK14618 5 MRVAVLGA----------GAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLP--------GVALPAELYPTA 66 (328)
T ss_pred CeEEEECc----------CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCC--------CCcCCCCeEEeC
Confidence 37999997 578999999999999999999995433221111110000000 001112355667
Q ss_pred ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 405 DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
++.++++++|.|+++++....+ .+.+.+++..+++|..+=+
T Consensus 67 ~~~e~~~~aD~Vi~~v~~~~~~-----~v~~~l~~~~~vi~~~~Gi 107 (328)
T PRK14618 67 DPEEALAGADFAVVAVPSKALR-----ETLAGLPRALGYVSCAKGL 107 (328)
T ss_pred CHHHHHcCCCEEEEECchHHHH-----HHHHhcCcCCEEEEEeecc
Confidence 8888899999999999988643 3445555555889988833
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.44 Score=49.63 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=28.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|+|.|+|+|.-|.++|..|. + |++|+++|.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~--G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K--FGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C--CCeEEEEcCC
Confidence 78999999999999999988 8 9999999954
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.31 Score=49.60 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCeEEEECCCCChh--HHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCc
Q 011650 346 AIDVCKGLMGDKARLSIYDPQVPQE--HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
...++..|.+.|.+|.+||+.-..- .....+. ..+++...+..++++++|+||++++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~-------------------~~Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVE-------------------DAGVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHH-------------------HCCCEEeCCHHHHHhCCCEEEEECCCc
Confidence 5788899999999999999864311 0111111 134667778889999999999999977
Q ss_pred c-cccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 424 E-FKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 424 ~-~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
. .++. ++.+...+++..+|+|+...-
T Consensus 93 ~~v~~V-l~~L~~~L~~g~IVId~ST~~ 119 (342)
T PRK12557 93 KKTVEI-AKNILPHLPENAVICNTCTVS 119 (342)
T ss_pred HHHHHH-HHHHHhhCCCCCEEEEecCCC
Confidence 6 3432 346666676667899987654
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.24 Score=49.14 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=32.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
||.|||+|.+|..+|..|+.. |. +++++|.+.-....+++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~a--GVg~ItlvD~D~Ve~sNL~RQ 42 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW--GVRHITFVDSGKVSYSNPVRQ 42 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCEeccccCCcc
Confidence 689999999999999999998 65 789999775444445543
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.098 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|++|.|||.|.+|+..|..|++. |++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCc
Confidence 46799999999999999999998 999999996543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 480 | ||||
| 2q3e_A | 467 | Structure Of Human Udp-Glucose Dehydrogenase Comple | 1e-170 | ||
| 3tdk_A | 487 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-170 | ||
| 3khu_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-169 | ||
| 3prj_A | 494 | Role Of Packing Defects In The Evolution Of Alloste | 1e-169 | ||
| 3itk_A | 467 | Crystal Structure Of Human Udp-Glucose Dehydrogenas | 1e-169 | ||
| 4edf_A | 494 | Dimeric Hugdh, K94e Length = 494 | 1e-169 | ||
| 3tf5_A | 493 | Structure Of Udp-Glucose Dehydrogenase V132 Deletio | 1e-168 | ||
| 2o3j_A | 481 | Structure Of Caenorhabditis Elegans Udp-Glucose Deh | 1e-160 | ||
| 2y0e_A | 478 | Bcec And The Final Step Of Ugds Reaction Length = 4 | 5e-73 | ||
| 2y0d_A | 478 | Bcec Mutation Y10k Length = 478 | 7e-72 | ||
| 2y0c_A | 478 | Bcec Mutation Y10s Length = 478 | 7e-72 | ||
| 4a7p_A | 446 | Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase | 1e-68 | ||
| 3gg2_A | 450 | Crystal Structure Of Udp-Glucose 6-Dehydrogenase Fr | 5e-65 | ||
| 3vtf_A | 444 | Structure Of A Udp-Glucose Dehydrogenase From The H | 7e-52 | ||
| 1mv8_A | 436 | 1.55 A Crystal Structure Of A Ternary Complex Of Gd | 9e-32 | ||
| 1mfz_A | 436 | Partially Refined 2.8 A Crystal Structure Of Gdp-Ma | 8e-31 | ||
| 3g79_A | 478 | Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuro | 6e-25 | ||
| 3ojl_A | 431 | Native Structure Of The Udp-N-Acetyl-Mannosamine De | 1e-22 | ||
| 3phl_A | 424 | The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 4 | 2e-22 | ||
| 3pid_A | 432 | The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-T | 2e-22 | ||
| 1dli_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 8e-19 | ||
| 1dlj_A | 402 | The First Structure Of Udp-Glucose Dehydrogenase (U | 7e-18 |
| >pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed With Nadh And Udp-Glucose Length = 467 | Back alignment and structure |
|
| >pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Length = 487 | Back alignment and structure |
|
| >pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Glu161gln, In Complex With Thiohemiacetal Intermediate Length = 467 | Back alignment and structure |
|
| >pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And Induced Fit In Human Udp-Glucose Dehydrogenase. Length = 494 | Back alignment and structure |
|
| >pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Thr131ala, Apo Form. Length = 467 | Back alignment and structure |
|
| >pdb|4EDF|A Chain A, Dimeric Hugdh, K94e Length = 494 | Back alignment and structure |
|
| >pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion Length = 493 | Back alignment and structure |
|
| >pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose Dehydrogenase Length = 481 | Back alignment and structure |
|
| >pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction Length = 478 | Back alignment and structure |
|
| >pdb|2Y0D|A Chain A, Bcec Mutation Y10k Length = 478 | Back alignment and structure |
|
| >pdb|2Y0C|A Chain A, Bcec Mutation Y10s Length = 478 | Back alignment and structure |
|
| >pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From Sphingomonas Elodea Length = 446 | Back alignment and structure |
|
| >pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From Porphyromonas Gingivalis Bound To Product Udp-Glucuronate Length = 450 | Back alignment and structure |
|
| >pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The Hyperthermophilic Archaeon Pyrobaculum Islandicum Length = 444 | Back alignment and structure |
|
| >pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose Dehydrogenase From P. Aeruginosa Length = 436 | Back alignment and structure |
|
| >pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase From Methanosarcina Mazei Go1 Length = 478 | Back alignment and structure |
|
| >pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine Dehydrogenase Cap5o From Staphylococcus Aureus Length = 431 | Back alignment and structure |
|
| >pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 424 | Back alignment and structure |
|
| >pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal Six- Histidine Tag Length = 432 | Back alignment and structure |
|
| >pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
| >pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 480 | |||
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 0.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 0.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 1e-161 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 1e-155 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 1e-136 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 1e-107 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 1e-104 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 1e-102 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 5e-58 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 8e-04 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 8e-04 |
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Length = 481 | Back alignment and structure |
|---|
Score = 790 bits (2042), Expect = 0.0
Identities = 264/483 (54%), Positives = 350/483 (72%), Gaps = 14/483 (2%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+ K+ C+GAGYVGGPT A+IA KCP I V VVD++ +I WNSD+LPIYEPGL+E+V
Sbjct: 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFA 68
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
RG+NLFFS+D+ K + EA+++F+SVNTPTK G G G A DL Y ES +R IA +
Sbjct: 69 ARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGP 128
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEFLAEGTAINDLFKPDRVLIG 177
KIVVEKSTVPVK AE+I IL + + FQ+LSNPEFLAEGTA+ DL PDRVLIG
Sbjct: 129 KIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIG 188
Query: 178 GRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237
G +PEG++A+ L +Y +WVP +RI+ TN WS+E+SKL ANAFLAQRISS+N++SA+C
Sbjct: 189 GESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248
Query: 238 EATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWK 297
EATGA++S+V+HA+G+D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE LP+VA+YW+
Sbjct: 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQ 308
Query: 298 QVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK 357
VI +N++Q+ RF +++++ +FNTV+ KKIAI GFAFKK+TGDTRE+ AI V K LM +
Sbjct: 309 GVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEH 368
Query: 358 ARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVC 417
A+LS+YDP+V + + DL D + V SD Y A + +H +
Sbjct: 369 AKLSVYDPKVQKSQMLNDLASVTSAQDVE-----------RLITVESDPYAAARGAHAIV 417
Query: 418 ILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMP 477
+LTEWDEF L+Y +I+N+MQ PA +FDGR ILD + LR+IGF ++IG D+
Sbjct: 418 VLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQAYNLFG 477
Query: 478 AVA 480
Sbjct: 478 TAG 480
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467 | Back alignment and structure |
|---|
Score = 789 bits (2041), Expect = 0.0
Identities = 290/472 (61%), Positives = 356/472 (75%), Gaps = 12/472 (2%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+ KICCIGAGYVGGPT +VIA CP I V VVD++ RINAWNS LPIYEPGL+EVV+
Sbjct: 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES 64
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFST+++ ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I S
Sbjct: 65 CRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGY 124
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDRVLIGGR 179
KIV EKSTVPV+ AE+I +I N++ +N Q+LSNPEFLAEGTAI DL PDRVLIGG
Sbjct: 125 KIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGD 184
Query: 180 ETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239
ETPEG +A++AL VY HWVP ++IL TN WS+E+SKLAANAFLAQRISS+N++SALCEA
Sbjct: 185 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244
Query: 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQV 299
TGADV +V+ AIG D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QV
Sbjct: 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQV 304
Query: 300 IKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKAR 359
I +NDYQ+ RF +R++ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K LM + A
Sbjct: 305 IDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAH 364
Query: 360 LSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCIL 419
L IYDP+VP+E I DL D + V ++ D YEA +H V I
Sbjct: 365 LHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVIC 415
Query: 420 TEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGKPL 469
TEWD FK LDY++I+ M KPAF+FDGR +LD +L+ IGF + +IGK +
Sbjct: 416 TEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV 467
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* Length = 478 | Back alignment and structure |
|---|
Score = 463 bits (1194), Expect = e-161
Identities = 166/474 (35%), Positives = 253/474 (53%), Gaps = 31/474 (6%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+ IG+G VG T A +A I +V +D+ +I+ N+ +PI+EPGL+EV+ +
Sbjct: 10 NLTIIGSGSVGLVTGACLA----DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIAR 65
Query: 61 -CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS 119
L FSTD+E V ++ F++V TP G +ADL Y +AAR I
Sbjct: 66 NRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 DKIVVEKSTVPVKTAEAIEKI----LMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVL 175
K++V+KSTVPV TAE + L F ++SNPEFL EG A++D +PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGMKAIKALKDVYAHWV-PEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234
IG + G +A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAN 294
L + GAD+ V IG D RIG FL A G+GGSCF KD+ L+ + +G
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQ 298
Query: 295 YWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM 354
K V VN QK +++V+ ++G+ AI G AFK +T D RE P+ ++ L+
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSH 414
AR++ YDP V QE +R + PS + ++ D +A +D+
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIA----------LDLADHPSWLERLSFVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
+ I+TEW FK+ D+ + + P +FDGRN+ + E + + G + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Length = 450 | Back alignment and structure |
|---|
Score = 449 bits (1157), Expect = e-155
Identities = 161/474 (33%), Positives = 238/474 (50%), Gaps = 47/474 (9%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
I +G GYVG + A + V +D +I NS +PIYEPGLE+++ +
Sbjct: 4 DIAVVGIGYVGLVSATCFA----ELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR 59
Query: 61 -CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS 119
+ L F T++E+ V EA+I+F++V TP G +AD++Y AAR I
Sbjct: 60 NVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSR 114
Query: 120 DKIVVEKSTVPVKTAEAIEKI----LMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVL 175
++V KSTVPV + I K L I+F I SNPEFL EG AI+D KPDRV+
Sbjct: 115 YILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVV 174
Query: 176 IGGRETPEGMKAIKALKDVYAHWV-PEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMS 234
+G +A + + +Y + R+L ++ SAE++K AANA LA RIS +N ++
Sbjct: 175 VGVDSD----RARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVA 230
Query: 235 ALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAN 294
LCE GADVS V IG DSRIG KFL G+GGSCF KD+ L+ E NG
Sbjct: 231 NLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--ME 288
Query: 295 YWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM 354
+ V +VN+ QK+ ++ + V G+ +AI G +FK T D RE P++ + + L+
Sbjct: 289 VLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLL 348
Query: 355 GDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSH 414
R+ +YDP M + ++V +D Y+A + +
Sbjct: 349 EVGCRVRVYDPVA----------MKEAQKRLG-----------DKVEYTTDMYDAVRGAE 387
Query: 415 GVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
+ +TEW EF+ D+ + M V DGRN+ + F + +IG
Sbjct: 388 ALFHVTEWKEFRMPDWSALSQAMAASL-VIDGRNVYE--LPADSDFTLLNIGNS 438
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Length = 436 | Back alignment and structure |
|---|
Score = 399 bits (1029), Expect = e-136
Identities = 111/467 (23%), Positives = 195/467 (41%), Gaps = 50/467 (10%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+I G GYVG ++ + EV VD+S +I+ N + PI EPGLE +++Q
Sbjct: 2 RISIFGLGYVGAVCAGCLS----ARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ 57
Query: 61 -CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS 119
+ L +TD +K V ++++ F+ V TP+K G DL Y E+ R I +
Sbjct: 58 GRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIRE 112
Query: 120 D---KIVVEKSTVPVKTAE----AIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPD 172
VV +STV T + + G++F + +NPEFL E TAI D P
Sbjct: 113 KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPP 172
Query: 173 RVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232
+IG + L+++Y + I+ + AE+ K N + A +++ N
Sbjct: 173 MTVIGE----LDKQTGDLLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANE 226
Query: 233 MSALCEATGADVSQVSHAIGFDSRIG--PKFLNASVGFGGSCFQKDILNLVYICECNGLP 290
+ + +A G D +V I D ++ ++ FGGSC KD+ L Y +
Sbjct: 227 IGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE 286
Query: 291 EVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVC 350
+++ N Q + + + S +K+ +LG +FK T D RE+P +++
Sbjct: 287 --HPMLGSLMRSNSNQVQKAFDLITS-----HDTRKVGLLGLSFKAGTDDLRESPLVELA 339
Query: 351 KGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEAT 410
+ L+G L I+D V E+ + ++ H+ ++ SD E
Sbjct: 340 EMLIGKGYELRIFDRNV--EYARVHGANKEYIESKIPHV---------SSLLVSDLDEVV 388
Query: 411 KDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457
S + + + F +L + + D + +
Sbjct: 389 ASSDVLVLGNGDELFVDLVNKT----PSGKK-LVDLVGFMPHTTTAQ 430
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-107
Identities = 87/437 (19%), Positives = 183/437 (41%), Gaps = 49/437 (11%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KI G+GYVG +++L+ EV +VDI +++ N+ PI + +E +K +
Sbjct: 2 KIAVAGSGYVGLSLGVLLSLQ---NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ 58
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
++ + D + +EA +V ++ T D + E+ + + V+
Sbjct: 59 L-SIKATLDSKAAYKEAELVIIATPTNYN----SRINYFDTQHVETVIKEVLSVNS-HAT 112
Query: 123 VVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGR--E 180
++ KST+P+ + + +I+ +PEFL E A+ D P R+++ +
Sbjct: 113 LIIKSTIPIGFITEMRQKFQ------TDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166
Query: 181 TPEGMKAIKALKDV-YAHWVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238
+P+ + + + + +L AE KL AN +LA R++ N + E
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE 226
Query: 239 ATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQ 298
+ + + I +D RIG + N S G+GG KD L + N +P+ +
Sbjct: 227 SRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIPQ--TLIEA 282
Query: 299 VIKVNDYQKTRFVNRVVSSMFNTVS-GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK 357
++ N+ +K+ ++++ + S K + + K ++ + RE+ DV L
Sbjct: 283 IVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKD 342
Query: 358 ARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVC 417
++ IY+P + + + +Q ++ +D K ++ +
Sbjct: 343 IKIIIYEPMLNKL------------------------ESEDQSVLVNDLENFKKQANIIV 378
Query: 418 ILTEWDEFKNLDYQKIY 434
+E +++ K+Y
Sbjct: 379 TNRYDNELQDVK-NKVY 394
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432 | Back alignment and structure |
|---|
Score = 316 bits (813), Expect = e-104
Identities = 93/435 (21%), Positives = 175/435 (40%), Gaps = 55/435 (12%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ 60
+KI G GYVG +IA EV +DI +++ N PI + ++E + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQN---HEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
+ N +TD R A+ V ++ T + + E+ R + +++ +
Sbjct: 93 -KPLNFRATTDKHDAYRNADYVIIATPTDYD----PKTNYFNTSTVEAVIRDVTEINP-N 146
Query: 121 KIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE 180
+++ KST+PV I++ L ++ +PEFL EG A+ D P R++IG R
Sbjct: 147 AVMIIKSTIPVGFTRDIKERL------GIDNVIFSPEFLREGRALYDNLHPSRIVIGERS 200
Query: 181 TPEGMKAIKALKDVYAHWVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239
+A + + + +D L T+ AE KL AN +LA R++ N + + E+
Sbjct: 201 A----RAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAES 256
Query: 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQV 299
G + Q+ + D RIG + N S G+GG C KD L+ E +P N +
Sbjct: 257 QGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYE--SVPN--NIIAAI 312
Query: 300 IKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKAR 359
+ N +K + +++ K + + K + + R + + K +
Sbjct: 313 VDANRTRKDFIADSILA-----RKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIP 367
Query: 360 LSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCIL 419
+ IY+P + ++ V D +++ +
Sbjct: 368 VIIYEPVMQED-------------------------EFFNSRVVRDLNAFKQEADVIISN 402
Query: 420 TEWDEFKNLDYQKIY 434
+E ++ K+Y
Sbjct: 403 RMAEELADVA-DKVY 416
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Length = 478 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-102
Identities = 106/490 (21%), Positives = 193/490 (39%), Gaps = 58/490 (11%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI----SVPRINAWNSDQLPIY--EPGL 54
+ KI +G GYVG P + A +V S +I N + P+ EPGL
Sbjct: 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGL 77
Query: 55 EEVVKQC-RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI 113
EE++ + + + D + + E + V +++ TP D + R +
Sbjct: 78 EELIGKVVKAGKFECTPDFSR-ISELDAVTLAIQTPFANPKDLE---PDFSALIDGIRNV 133
Query: 114 ADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRG----INFQILSNPEFLAEGTAINDLF 169
K +VV +ST+ T E + K ++ G +F + PE + G + ++
Sbjct: 134 GKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIR 193
Query: 170 KPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISS 229
+ DR+ +GG K L Y+ + +++ + +AEV+K A N F +I++
Sbjct: 194 EHDRI-VGG-IDEASTKRAVEL---YSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAA 248
Query: 230 VNAMSALCEATGADVSQVSHAIG--FDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN 287
+N ++ CEA G +V V + I L G GG C KD +L +
Sbjct: 249 INQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308
Query: 288 GLP-EVANYWKQVIK----VNDYQKTRFVNRVVSSMFN---TVSGKKIAILGFAFKKDTG 339
+ + VND+ N V+++ + G K+A+LG+AF KD+
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368
Query: 340 DTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399
D R TP+ + A + ++DP V
Sbjct: 369 DARNTPSEPYRDLCLKAGASVMVHDPYVVNYP---------------------------G 401
Query: 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPA-FVFDGRNILDVEKLRKI 458
V ++ + E +++ + +L + +L K + DGRN+++ ++
Sbjct: 402 VEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFIGK 461
Query: 459 GFIVYSIGKP 468
GF+ IG+
Sbjct: 462 GFVYKGIGRE 471
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* Length = 431 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 5e-58
Identities = 111/483 (22%), Positives = 198/483 (40%), Gaps = 78/483 (16%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
K+ +G GY+G PT + A ++V VDI+ I+ + Q+ I EPGL+EV ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 63 GK-NLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
L ST E +++ ++V TP ++ D++ A I K
Sbjct: 71 SSGKLKVSTTPE----ASDVFIIAVPTPNND---DQYRSCDISLVMRALDSILPFLKKGN 123
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEFLAEGTAINDLFKPDRVLIGG 178
++ +ST+ KT + K ++ N G + ++ PE + G + +L +R+ IGG
Sbjct: 124 TIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IGG 182
Query: 179 RETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238
T ++A K + Y +V + ++ T+ +AE+SKL N + I+ N ++ +C
Sbjct: 183 -VTKACIEAGKRV---YRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKICN 237
Query: 239 ATGADVSQV-----SHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVA 293
+V V H + GP G GG C D ++
Sbjct: 238 NLNINVLDVIEMANKHPRVNIHQPGP-------GVGGHCLAVDPYFIIAK---------D 281
Query: 294 NYWKQVIK----VNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDV 349
++I+ +N+ +V + +SG K+ + G +K D D RE+PA D+
Sbjct: 282 PENAKLIQTGREINNS-MPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDI 340
Query: 350 CKGLMGDK-ARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYE 408
+ L + + YDP V + ++ D+
Sbjct: 341 YELLNQEPDIEVCAYDPHVELDFVEHDMS------------------------------H 370
Query: 409 ATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468
A KD+ V IL++ EFKNL K +FD +N++ + + +I
Sbjct: 371 AVKDASLVLILSDHSEFKNLSDSHFDKMKHK--VIFDTKNVVKSSFEDVLYYNYGNIFNF 428
Query: 469 LDK 471
+DK
Sbjct: 429 IDK 431
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 2e-12
Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 33/223 (14%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN----SDQLPIYEPGLEEVV 58
K+C G G G T++ +A +EV V+ + W +D+L + +
Sbjct: 4 KVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62
Query: 59 KQCRGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSK 118
+ + + + D E + A++V ++V E + +A +
Sbjct: 63 TEVKSRPKVITKDPEIAISGADVVILTVPA---------------FAHEGYFQAMAPYVQ 107
Query: 119 SDKIVVEKSTVPVKT--AEAIEKILMHNSRGINFQILSNPEFLAE----GTAINDLFKPD 172
++V +P + IL + ++ + G + L
Sbjct: 108 DSALIV---GLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKS 164
Query: 173 RVLI----GGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS 211
+ G +T + + ++ L + L + S
Sbjct: 165 VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 66/454 (14%), Positives = 141/454 (31%), Gaps = 149/454 (32%)
Query: 113 IADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGIN----FQIL-SNPEFLAEGTAIND 167
+ + D V+ + + E I+ I+M F L S E + + + +
Sbjct: 30 VDNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEE 85
Query: 168 LFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA-ANAFLAQ- 225
+ + + + M IK + T ++ + +L N A+
Sbjct: 86 VLRINYKFL--------MSPIKT--------EQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 226 ---RISSVNAM-SALCEAT-GADVSQVSHA-IGF-----------DSRIGPKFLNASVGF 268
R+ + AL E +V + +G ++ K F
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKM-----DF 182
Query: 269 G------GSCFQKDIL-----NLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317
+C + + L+Y + N + ++++ + + S
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSK 241
Query: 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDV-CKGLM--GDKARLSIYD-------PQV 367
+ + +L + + + A ++ CK L+ K + D +
Sbjct: 242 PYENC----LLVL-----LNVQNAKAWNAFNLSCKILLTTRFK---QVTDFLSAATTTHI 289
Query: 368 PQEHIQRDLQMNK----F-DW------DHPIHLQPTSPSTINQVIVASDAYEATKDSHGV 416
+H L ++ + D P + T+P ++ I+A E+ +D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIA----ESIRDG--- 340
Query: 417 CILTEWDEFKNLDYQKIYN------NMQKPA---------FVF-DGRNI----------- 449
L WD +K+++ K+ N+ +PA VF +I
Sbjct: 341 --LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 450 -------LDVEKLRKIGFIVYSIGKPLDKWLKDM 476
+ V KL K YS+ ++K K+
Sbjct: 399 VIKSDVMVVVNKLHK-----YSL---VEKQPKES 424
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 24/234 (10%), Positives = 62/234 (26%), Gaps = 53/234 (22%)
Query: 76 VREANIVFVSV-NTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134
+ + + + + LG A + + + +V+ +T
Sbjct: 63 LSASPATIFVLLDNHATHEVLGMPGVAR--------------ALAHRTIVDYTTNAQDEG 108
Query: 135 EAIEKILMHNSRGINF---QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKAL 191
A++ + N G ++ I++ P + + + G E + +AL
Sbjct: 109 LALQG--LVNQAGGHYVKGMIVAYPRNVGHRESH--------SIHTGDR--EAFEQHRAL 156
Query: 192 KDVYA---HWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVS 248
+ A ++P D A +A + + + G VS+ +
Sbjct: 157 LEGLAGHTVFLPWD--------EALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTA 208
Query: 249 HAI-----GFDSRI----GPKFLN---ASVGFGGSCFQKDILNLVYICECNGLP 290
+ F + + ++ G+
Sbjct: 209 RLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVW 262
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Length = 359 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 35/138 (25%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVK 59
++K+ +G G + L+ I VA D + R V +
Sbjct: 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLER---------------ARRVHR 49
Query: 60 QCRGKNLFFSTDVEKHVREANIVFVSVNTPTKT------QGLGAGK--------AADLTY 105
+ +V + + + V + P + + G A L
Sbjct: 50 FISDIPVL--DNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATL-- 105
Query: 106 WESAARMIADVSKSDKIV 123
E +I +SD +
Sbjct: 106 -EELETLIDAARRSDVVS 122
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 480 | |||
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 100.0 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 100.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 100.0 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 100.0 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 100.0 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.98 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.98 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.98 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.98 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.97 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.97 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.97 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.97 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.97 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.95 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.95 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.94 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.93 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.93 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.93 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.92 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.92 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.91 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.91 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.9 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.9 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.88 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.86 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.86 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.86 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.86 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.85 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.85 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.85 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.85 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.84 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.83 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.82 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.76 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.76 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.74 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.73 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.73 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.73 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.72 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.72 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.71 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.71 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.7 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.69 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.69 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.67 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.67 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.66 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.66 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.65 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.65 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.64 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.64 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.63 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.61 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.61 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.6 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.59 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.57 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.56 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.55 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.55 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.53 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.52 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.49 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.49 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.47 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.46 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.43 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.38 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.36 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.27 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.27 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.24 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.19 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.18 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.17 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.12 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 99.11 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.11 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.7 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.07 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.02 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.01 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.99 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.99 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.96 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.95 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.94 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.93 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.93 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.92 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.91 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.88 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.86 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.86 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.84 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.84 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.84 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.84 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.83 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.82 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.82 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.82 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.82 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.81 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.81 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.81 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.79 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.79 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.78 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.78 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.77 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.75 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.74 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.73 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.72 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.71 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.71 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.69 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.68 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.67 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.65 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.63 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.61 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.61 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.6 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.57 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.53 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.53 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.52 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.51 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.5 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.49 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.49 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.49 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.48 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.46 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.44 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.43 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.42 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.42 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.42 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.41 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.4 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.39 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.39 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.39 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.38 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.38 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.37 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.37 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.37 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.36 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.35 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.33 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.32 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.31 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.31 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.3 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.29 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.28 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.24 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.24 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.24 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.23 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.23 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.23 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.22 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.2 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.2 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.2 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.19 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.19 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.18 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.17 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.14 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.14 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.13 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.12 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.12 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.11 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.11 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.11 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.11 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.1 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.1 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.1 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.09 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.07 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.07 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.06 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.03 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.03 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.02 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.02 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.99 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.98 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.97 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.97 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.96 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.95 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.94 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.92 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.92 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.92 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.91 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.88 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.86 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.86 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.84 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.84 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.8 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.79 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.79 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.77 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.77 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.76 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.74 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.74 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.72 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.7 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.68 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.68 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.67 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.65 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.64 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.64 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.64 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.61 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.6 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.6 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.58 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.57 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.57 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.56 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.56 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.54 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.54 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.54 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.53 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.5 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.49 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.48 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.46 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.46 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.46 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.43 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.42 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.39 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.39 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.38 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.38 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.38 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.37 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.36 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.35 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.34 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.34 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.33 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.31 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.28 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 97.27 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.26 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.26 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.24 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.24 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.23 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.23 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.22 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.21 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.17 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.17 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.17 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 97.16 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.16 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.15 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.14 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.14 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.14 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 97.14 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.13 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.13 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.12 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.12 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.11 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.11 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.1 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 97.09 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.09 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.09 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.08 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.08 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 97.06 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.05 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.05 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.05 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.04 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.04 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.02 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.01 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.01 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.01 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 97.0 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.98 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 96.97 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 96.95 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.95 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.94 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 96.93 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.9 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.89 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.88 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.87 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.87 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.85 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.84 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.83 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.82 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.81 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.79 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 96.76 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.73 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.72 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.72 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.71 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 96.7 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.7 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.69 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.69 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.66 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.63 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.63 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.63 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.62 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.61 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 96.61 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.61 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.6 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.59 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.59 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.59 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.57 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 96.57 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.55 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 96.55 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.54 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 96.53 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.52 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.49 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.46 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.46 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 96.44 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.44 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.44 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.42 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.42 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.37 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.35 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.34 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.32 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.31 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.31 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 96.29 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.22 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 96.21 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 96.18 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.16 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.15 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.14 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.12 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.1 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 96.09 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.07 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.07 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.03 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.03 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.03 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.02 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.02 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.0 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.99 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.96 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.96 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.96 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.95 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.92 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 95.9 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.89 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.89 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.86 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 95.86 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 95.86 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.85 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.85 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.84 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 95.83 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 95.82 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.8 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 95.76 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.76 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.75 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.75 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.75 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.74 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 95.73 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.73 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.72 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.65 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.59 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.52 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 95.48 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.47 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 95.45 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.44 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.33 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.32 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.32 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 95.31 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.31 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.29 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 95.29 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.28 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.27 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.27 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 95.27 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.26 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 95.23 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.22 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.2 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.17 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.14 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 95.13 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.12 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.1 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 95.08 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.06 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.05 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.05 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.04 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 95.03 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.03 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 95.03 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 95.02 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 95.02 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 95.02 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.02 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 95.01 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 95.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.99 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 94.94 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 94.9 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.9 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.9 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.85 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.84 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.84 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 94.83 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.81 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.81 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.77 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 94.74 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.74 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 94.71 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 94.67 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 94.67 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.65 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 93.65 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.63 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 94.59 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 94.55 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.55 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 94.54 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.53 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.52 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.42 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 94.39 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.36 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.25 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.23 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.22 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 94.18 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 94.17 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 94.16 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.16 |
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-95 Score=747.89 Aligned_cols=419 Identities=34% Similarity=0.545 Sum_probs=384.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|.+|+|||+||||+++|.+|+++ ||+|+|+|+|+++++.|++|..|++||++++++++ ...+++++|+|+++++++|
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~--G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a 98 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL--GHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT 98 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence 56899999999999999999998 99999999999999999999999999999999876 5678999999999999999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCC---CCcEEEEecCCCcccHHHH-HHHHHhhcCCCceEEeeC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSK---SDKIVVEKSTVPVKTAEAI-EKILMHNSRGINFQILSN 155 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~---~~~iVi~~STv~~gt~~~l-~~~l~~~~~g~~~~v~~~ 155 (480)
|++|||||||.+.++ .+|+++++++.+.|+++++ ++++||++||+||||++++ .+.+++.+++.+|+++|+
T Consensus 99 d~~~I~VpTP~~~d~-----~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~ 173 (444)
T 3vtf_A 99 DATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASN 173 (444)
T ss_dssp SEEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEEC
T ss_pred CceEEEecCCCCCCC-----CCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecC
Confidence 999999999988754 8999999999999999986 5789999999999999985 566776655789999999
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
|||+.||++++++.+|+|||+|+. ++++.+.+.++|+.+. .++.++++++||++|+++|+|++++|+|+||++.
T Consensus 174 PErl~eG~a~~d~~~~~riViG~~----~~~a~~~~~~ly~~~~--~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ 247 (444)
T 3vtf_A 174 PEFLREGSALEDFFKPDRIVIGAG----DERAASFLLDVYKAVD--APKLVMKPREAELVKYASNVFLALKISFANEVGL 247 (444)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHTTTSC--SCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccccccCCcEEEcCC----CHHHHHHHHHHHhccC--CCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 4788999999999874 4677889999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHH
Q 011650 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVV 315 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (480)
+|+++|+|+++|++++++++|+|++|++||+||||||||||+++|.+.|++.|++ .+++++++++|++||.++++++.
T Consensus 248 ice~~GiDv~eV~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~--~~li~a~~~iN~~~~~~vv~~l~ 325 (444)
T 3vtf_A 248 LAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLE--MAISKAVLRVNEYMPRYAVQLLE 325 (444)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCC--HHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 78999999999999999999998
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+ +.++++||+|||+|||+||+|+||||++.|++.|.++|++|.+|||++.++.. ..++
T Consensus 326 ~~~-~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~-~~~~------------------ 385 (444)
T 3vtf_A 326 ERL-GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKAR-AVLG------------------ 385 (444)
T ss_dssp HHH-TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHH-HHHG------------------
T ss_pred HHc-cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHH-HhcC------------------
Confidence 876 57899999999999999999999999999999999999999999999965433 3332
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKP 468 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~ 468 (480)
..+++++++++++++||+|||+|+|++|+++|+ +.+ +|||+||+++++. .+.|.||||.
T Consensus 386 --~~~~~~~~~~~a~~~aDavvi~t~h~ef~~ld~-------~~~-vv~D~Rni~~~~~----~~~y~gigWs 444 (444)
T 3vtf_A 386 --DSVTYVEDPQALLDQVEGVIIATAWPQYEGLDY-------RGK-VVVDGRYVKKARE----AKIYEGVAWA 444 (444)
T ss_dssp --GGSEECSCHHHHHHHCSEEEECSCCGGGGGSCC-------TTC-EEEESSCCGGGGG----SSEEEESSCC
T ss_pred --CCceecCCHHHHHhCCCEEEEccCCHHHhCCCc-------CCC-EEEECCCCCChhh----hcceeeeecC
Confidence 357888999999999999999999999999985 345 9999999999753 4589999974
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-92 Score=735.86 Aligned_cols=432 Identities=37% Similarity=0.634 Sum_probs=396.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|+|||+||||+++|.+|+++ ||+|++||+++++++.++++..+++||++++++++ ...+++++|+|+++++++||
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 3799999999999999999998 99999999999999999999999999999998865 34678999999998899999
Q ss_pred EEEEEccCCCCc-CCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKT-QGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~-~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||||.+. ++ .+|++++++++++|.++++++++||++||++|||++++.+.+++...+.+|.++++|||+
T Consensus 87 vvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a 161 (446)
T 4a7p_A 87 AVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFL 161 (446)
T ss_dssp EEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCC
T ss_pred EEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccc
Confidence 999999999754 33 899999999999999999999999999999999999998888776544679999999999
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC--eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED--RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
.+|.+++++.+|++||+|+. ++++.++++++|+.+++.. ++..+++++||++|+++|++++++|+++||++.+|
T Consensus 162 ~eG~a~~d~~~p~~ivvG~~----~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~ 237 (446)
T 4a7p_A 162 REGAAIEDFKRPDRVVVGTE----DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC 237 (446)
T ss_dssp CTTSHHHHHHSCSCEEEECS----CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCCCEEEEeCC----cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 4789999999999986422 57889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++|+++++++||+|+++++||+||||+|+|||++++.+.|++.|++ .+++++++++|++||.++++++.+.
T Consensus 238 ~~~GiD~~~v~~~~~~~~rig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~--~~l~~~~~~iN~~~~~~~~~~i~~~ 315 (446)
T 4a7p_A 238 EQVGADVQEVSRGIGMDNRIGGKFLHAGPGYGGSCFPKDTLALMKTAADNETP--LRIVEATVQVNDARKRAMGRKVIKA 315 (446)
T ss_dssp HHTTCCHHHHHHHHHTSTTC---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHhcCCCCCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.++++||+|||+||||||+|+||||++.|++.|.++|++|.+|||++.++. .+. +
T Consensus 316 l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~---------------------~ 373 (446)
T 4a7p_A 316 MGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQA-SKM---------------------L 373 (446)
T ss_dssp TTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHH-GGG---------------------C
T ss_pred hcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhH-HHh---------------------c
Confidence 988899999999999999999999999999999999999999999999997432 222 1
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCC
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPL 469 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~ 469 (480)
+++.+++++++++++||+|||+|+|++|+++||+.+.+.|+.| +|||+||+++++.+++.||.|+||||+.
T Consensus 374 ~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~iG~~~ 444 (446)
T 4a7p_A 374 TDVEFVENPYAAADGADALVIVTEWDAFRALDLTRIKNSLKSP-VLVDLRNIYPPAELERAGLQYTGVGKPS 444 (446)
T ss_dssp SSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCHHHHHTTBSSC-BEECSSCCSCHHHHHHTTCBCCCSSCC-
T ss_pred CCceEecChhHHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCCC-EEEECCCCCCHHHHHhcCCEEEEecCCC
Confidence 3467788999999999999999999999999999999999888 8999999999999999999999999974
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-88 Score=709.14 Aligned_cols=432 Identities=37% Similarity=0.612 Sum_probs=392.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..+++|+++++++++ ...+++++++|+++++++||
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD 80 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD 80 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence 7999999999999999999998 99999999999999999999999999999987754 33578999999999899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC----CCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR----GINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----g~~~~v~~~P 156 (480)
+||+|||||.+.+ ..+|++++++++++|.++++++++|+++||++|||++++.+.+++... +.+|.++++|
T Consensus 81 vViiaVptp~~~~-----~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~P 155 (450)
T 3gg2_A 81 IIFIAVGTPAGED-----GSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNP 155 (450)
T ss_dssp EEEECCCCCBCTT-----SSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred EEEEEcCCCcccC-----CCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEech
Confidence 9999999998764 389999999999999999999999999999999999999888776432 3679999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCC-CeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPE-DRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
|++.+|.+.+++.+|+++++|+. ++++.++++++|+.+.+. .+++.+++++||++|+++|++++++++++||++.
T Consensus 156 e~a~eG~~~~~~~~p~~ivvG~~----~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 231 (450)
T 3gg2_A 156 EFLKEGNAIDDFMKPDRVVVGVD----SDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231 (450)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhccCCCEEEEEcC----CHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 478999999999988642 3678899999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHH
Q 011650 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVV 315 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (480)
+|+++|+|+++|+++++++||+++++++||+||||+|+|||++++.+.|++.|++ .+++++++++|+.||.++++++.
T Consensus 232 l~~~~Gid~~~v~~~~~~~~rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~iN~~~~~~~~~~~~ 309 (450)
T 3gg2_A 232 LCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--MEVLEAVERVNEKQKSILFDKFS 309 (450)
T ss_dssp HHHHHTCCHHHHHHHHHTSTTTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCCCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+++.++++||+|||+||||||+|+||||++.|++.|.++|++|.+|||++.++ ....|+
T Consensus 310 ~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~~------------------ 370 (450)
T 3gg2_A 310 TYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKE-AQKRLG------------------ 370 (450)
T ss_dssp HHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHG------------------
T ss_pred HHhcccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHH-HHHhcC------------------
Confidence 9998889999999999999999999999999999999999999999999999753 233332
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCc
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLD 470 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~ 470 (480)
..+++++++++++++||+|||+|+|++|+++||+.+.+.|+.| +|||+||+++++ ++.||.|+||||+..
T Consensus 371 --~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~--~~~g~~y~~ig~~~~ 440 (450)
T 3gg2_A 371 --DKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVYELP--ADSDFTLLNIGNSAI 440 (450)
T ss_dssp --GGSEECSSHHHHTTTCSCEEECSCCGGGSSCCHHHHHHHSSSC-EEEESSCCCCCC------CEEEECC----
T ss_pred --ccceecCCHHHHhcCCCEEEEccCCHHHhhcCHHHHHHhcCCC-EEEECCCCCChH--HhCCCEEEEeccccc
Confidence 2467889999999999999999999999999999999999988 899999999988 788999999999754
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-88 Score=707.36 Aligned_cols=430 Identities=25% Similarity=0.393 Sum_probs=389.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHH----HHHHHHcCCCCC--CCCChHHHHHH-hcCCCEEEecCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVP----RINAWNSDQLPI--YEPGLEEVVKQ-CRGKNLFFSTDV 72 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~----~v~~l~~g~~~~--~e~~l~~~~~~-~~~~~l~~t~d~ 72 (480)
||||+|||+|+||+++|.+|+++ +|| +|++||++++ +++.++++..++ +|+++++++++ ...+++++|+|
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 58999999999999999999986 479 9999999999 999999999999 89999988764 33578999999
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHH-HHHh-hcC--CC
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEK-ILMH-NSR--GI 148 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~-~~~--g~ 148 (480)
.+++++||+||+|||||.+.++ ...+|++++.++.++|.++++++++||++||++|||++++.. ++++ .+. +.
T Consensus 96 ~ea~~~aDvViiaVptp~~~~~---~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~ 172 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPFANPK---DLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGE 172 (478)
T ss_dssp GGGGGGCSEEEECCCCCCCSSC---CSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTT
T ss_pred HHHHhcCCEEEEecCCchhccC---CccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence 5679999999999999986633 112899999999999999999999999999999999999875 5634 332 56
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhcc-CCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHW-VPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
+|.++++|||+.+|.+..++.+|++||+|++ +++.++++++|+.+ .. .+++.+++++||++|+++|+|++++|
T Consensus 173 d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~-----~~~~~~~~~ly~~~~~~-~~~~~~~~~~aE~~Kl~~N~~~a~~I 246 (478)
T 3g79_A 173 DFALAHAPERVMVGRLLKNIREHDRIVGGID-----EASTKRAVELYSPVLTV-GQVIPMSATAAEVTKTAENTFRDLQI 246 (478)
T ss_dssp TBEEEECCCCCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHGGGCSS-CCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeCCccCCccchhhhhcCCcEEEEeCC-----HHHHHHHHHHHhhhccC-CeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999989999887764 77889999999998 44 57888999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCCC--CCCCccccCCCCccccchhhhHHHHHHHHHHCCCc----h-hhhHHHHHH
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIGFDS--RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP----E-VANYWKQVI 300 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~~~~--~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~----~-~~~~~~~~~ 300 (480)
+|+||++.+|+++|+|+++|+++++++| |++.++++||+||||||||||++++++.|++.|++ + ..+++++++
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~~~~~~ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~ 326 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLAR 326 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSCCSSSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCchhhhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHH
Confidence 9999999999999999999999999999 88889999999999999999999999999999965 1 257999999
Q ss_pred HHhhHhHHHHHHHHHHHhcC---CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhh
Q 011650 301 KVNDYQKTRFVNRVVSSMFN---TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQ 377 (480)
Q Consensus 301 ~~N~~~~~~~~~~~~~~~~~---~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~ 377 (480)
++|+.||.++++++.+.+.+ .++++||+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++. +
T Consensus 327 ~iN~~~~~~~~~~i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~------~- 399 (478)
T 3g79_A 327 KVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN------Y- 399 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC------B-
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc------c-
Confidence 99999999999999988743 7899999999999999999999999999999999999999999999972 1
Q ss_pred cccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcC--CCCEEEEcCCCCChHHH
Q 011650 378 MNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQ--KPAFVFDGRNILDVEKL 455 (480)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~~~~~~~~~ 455 (480)
+.+.++.++++++++||+|||+|+|++|+++||+.+.+.|+ .| +|||+||+++++.+
T Consensus 400 --------------------~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~-~i~D~rn~~~~~~~ 458 (478)
T 3g79_A 400 --------------------PGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANP-VIIDGRNVIEPDEF 458 (478)
T ss_dssp --------------------TTBCEESCHHHHHTTCSEEEECSCCHHHHSCCHHHHHHHHCCSSC-EEEESSSCSCHHHH
T ss_pred --------------------cCcceecCHHHHHhcCCEEEEecCCHHHHhhhHHHHHHHhccCCC-EEEECCCCCCHHHH
Confidence 12456789999999999999999999999999999999998 56 99999999999999
Q ss_pred hhcCcEEEEecCCC
Q 011650 456 RKIGFIVYSIGKPL 469 (480)
Q Consensus 456 ~~~g~~y~~iG~~~ 469 (480)
++.||.|+||||..
T Consensus 459 ~~~g~~y~~ig~~~ 472 (478)
T 3g79_A 459 IGKGFVYKGIGREG 472 (478)
T ss_dssp HTTTCEEEETTCTT
T ss_pred HhcCCEEEEecccC
Confidence 99999999999954
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-88 Score=696.61 Aligned_cols=410 Identities=26% Similarity=0.422 Sum_probs=364.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
.|.+|||+||||+++|.+|+++ ||+|++||+++++++.|+++..|++||++++++++ ...+++++|+|+ ++||
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~----~~aD 85 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP----EASD 85 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSC----CCCS
T ss_pred CccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCch----hhCC
Confidence 3789999999999999999999 99999999999999999999999999999999865 346889999984 5899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHH-HhhcC--CCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIL-MHNSR--GINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l-~~~~~--g~~~~v~~~Pe 157 (480)
+||+|||||.+.+. +..+|+++++++.++|.++++++++||++||++|||++++.+.+ ++.+. +.+|.++++||
T Consensus 86 vvii~VpTp~~~~~---~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 86 VFIIAVPTPNNDDQ---YRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp EEEECCCCCBCSSS---SCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred EEEEEeCCCccccc---cCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 99999999986531 14899999999999999999999999999999999999986654 43332 57899999999
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|+.+|.+..++.+|++||+|++ +++.++++++|+.+++ ..++.+++++||++|+++|+|++++|+|+||++.+|
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~-----~~~~~~~~~ly~~~~~-~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~ 236 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVT-----KACIEAGKRVYRTFVQ-GEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHTTTCC-SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCC-----HHHHHHHHHHHHHHhC-CcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987763 7899999999999875 467789999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|+++|+++++++||+ ++++||+||||||||||+++|++.|++.| +++++++++|+.||.++++++.+.
T Consensus 237 e~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~-----~li~~~~~iN~~~~~~v~~~~~~~ 309 (431)
T 3ojo_A 237 NNLNINVLDVIEMANKHPRV--NIHQPGPGVGGHCLAVDPYFIIAKDPENA-----KLIQTGREINNSMPAYVVDTTKQI 309 (431)
T ss_dssp HHTTCCHHHHHHHHTTSTTC--CCCCCCSCCCCCCBCSCC---------CC-----HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHccCCCc--ccCCCCCCccccchhhhHHHHHHHHHHHh-----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999987 68899999999999999999999999876 699999999999999999999988
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC-CCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGD-KARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~-g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
+ +.+++++|+|||+|||+||+|+||||++.|++.|.++ |++|.+|||+++.+ +
T Consensus 310 l-~~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-----~-------------------- 363 (431)
T 3ojo_A 310 I-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-----F-------------------- 363 (431)
T ss_dssp H-HHSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-----T--------------------
T ss_pred h-hhcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-----c--------------------
Confidence 7 4688999999999999999999999999999999999 99999999999753 1
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPL 469 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~ 469 (480)
++.++++++++||+|||+|+|++|+++||+.+ +.|+.| +|||+||++++ +..||.|++|||-.
T Consensus 364 -----~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~-~~~~~~-~i~D~r~~~~~---~~~~~~y~~ig~~~ 426 (431)
T 3ojo_A 364 -----VEHDMSHAVKDASLVLILSDHSEFKNLSDSHF-DKMKHK-VIFDTKNVVKS---SFEDVLYYNYGNIF 426 (431)
T ss_dssp -----BCSTTHHHHTTCSEEEECSCCGGGTSCCGGGG-TTCSSC-EEEESSCCCCS---CCSSSEEEETTTGG
T ss_pred -----ccCCHHHHHhCCCEEEEecCCHHHhccCHHHH-HhCCCC-EEEECCCCCCc---hhcCeEEEeeCchh
Confidence 24578999999999999999999999999998 778877 99999999985 46899999999864
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-86 Score=695.03 Aligned_cols=460 Identities=57% Similarity=0.997 Sum_probs=404.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||+++|.+|+++++||+|++||+++++++.++++..+++|+++++++.....+++++++|+++++++||
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD 88 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD 88 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence 47999999999999999999997456999999999999999999999999999988876544467999999988899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh-hc--CCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH-NS--RGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~-~~--~g~~~~v~~~Pe 157 (480)
+||+|||||.+.++.+.++.+|++++++++++|.++++++++||++||++||+++++.+.+++ .+ .+.+|.++++||
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe 168 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPE 168 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEECCC
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeCcc
Confidence 999999999764322223478999999999999999999999999999999999999988887 43 146788999999
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
++.+|.+.+++.+++++++|+.++.+++++.++++++|+.++...+++.++++++|++|+++|++++++++++||++.+|
T Consensus 169 ~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la 248 (481)
T 2o3j_A 169 FLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248 (481)
T ss_dssp CCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999874433346889999999998632467888999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|++++++++++++|++.++++||+||||||+|||++++.+.|++.|+++.++++++++++|++||.++++++.+.
T Consensus 249 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~~~~~~~~~~~~~~ 328 (481)
T 2o3j_A 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAE 328 (481)
T ss_dssp HHHSCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHccCCCCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHhhHHHHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998767899999999999999999999999
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.+++++|+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.++...++.. . + +. ....
T Consensus 329 l~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~--~-~--~~------~~~~ 397 (481)
T 2o3j_A 329 LFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLAS--V-T--SA------QDVE 397 (481)
T ss_dssp TTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHH--H-S--CH------HHHH
T ss_pred hccccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHh--h-h--cc------cccc
Confidence 8777899999999999999999999999999999999999999999999986543222210 0 0 00 0000
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCcc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDK 471 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~ 471 (480)
+.+++++++++++++||+|||+|+|++|+++||+++.+.|+.|.+|||+||+++++++++.||.|+||||+.++
T Consensus 398 ~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~g~~~~~iG~~~~~ 471 (481)
T 2o3j_A 398 RLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQ 471 (481)
T ss_dssp HHEEEESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCSCHHHHHHHTCEEEETTSCSCC
T ss_pred CceeecCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCCCHHHHHhcCcEEEEecCcccc
Confidence 23678889999999999999999999999999999999999887899999999999999999999999997554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-83 Score=674.78 Aligned_cols=451 Identities=36% Similarity=0.590 Sum_probs=400.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|.+|+++ ||+|++||+++++++.+++++.+++++++++++.+ ...+++++++|+++++++||
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD 86 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD 86 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred ceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence 8999999999999999999998 99999999999999999999999999999877653 33567999999988899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc-CC---CceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS-RG---INFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g---~~~~v~~~P 156 (480)
+||+|||||.+.++ .+|++++++++++|.++++++++|+++||++||+++.+.+.+++.. .+ .+|.++++|
T Consensus 87 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~P 161 (478)
T 2y0c_A 87 VQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNP 161 (478)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred EEEEEeCCCcccCC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEECh
Confidence 99999999987644 8999999999999999999999999999999999999888877641 12 678999999
Q ss_pred cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC-CCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 157 EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP-EDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
|++.||.+.+++.+|+++++|+.+.....++.+.++++|+.+++ ..++..+++++||+.|+++|++++++++++||++.
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~ 241 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999998875210001788999999998752 24678899999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHH
Q 011650 236 LCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVV 315 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~ 315 (480)
+|+++|+|+++++++++.++|++..+++||+|+||+|++||++++.+.|++.|++ .++++++.++|+.|+.++++++.
T Consensus 242 la~~~Gid~~~v~~~i~~~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~--~pl~~~v~~in~~~~~~~~~~~~ 319 (478)
T 2y0c_A 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQILKAVSSVNATQKRVLADKIV 319 (478)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhcCCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999888899999999999999999999999999999 89999999999999999999999
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+.+++.+++++|+|||||||+||+|+||||++.|++.|.++|++|.+|||++..+ ....|+. ..|+-| .
T Consensus 320 ~~~~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~~~--~~~~~~--------~ 388 (478)
T 2y0c_A 320 ARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEE-ARRVIAL--DLADHP--------S 388 (478)
T ss_dssp HHHCSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHH-HHHHHHH--HTTTCH--------H
T ss_pred HHhcccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHH-HHHhhcc--cccccc--------c
Confidence 9987788999999999999999999999999999999999999999999998653 2222210 001111 0
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCcccc
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWL 473 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~ 473 (480)
..+.+.+++++++++++||+|||+|+|++|+++||+.+.+.|+.+ +|||+||+++++.+++.||.|+||||+..+|-
T Consensus 389 ~~~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~ig~~~~~~~ 465 (478)
T 2y0c_A 389 WLERLSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKTP-VIFDGRNLYEPETMSEQGIEYHPIGRPGSRQA 465 (478)
T ss_dssp HHTTEEECSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSSC-EEEESSCCSCHHHHHHTTCEEECSSSCCCHHH
T ss_pred cccceeecCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCCC-EEEECCCCCCHHHHHhcCCEEEEECcccchhH
Confidence 112477889999999999999999999999999999999999887 99999999999999999999999999887774
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-82 Score=670.59 Aligned_cols=459 Identities=63% Similarity=1.045 Sum_probs=403.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||+++|..|+++++||+|++||+++++++.++++..+++++++++++.+....++++++|+++++++||
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 57999999999999999999987456999999999999999999999999999988775433357899999988899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC-CCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~ 159 (480)
+||+|||+|.+.+++..+..+|++++.++.++|.++++++++|+++||+++++++.+.+.+++.+. +.++.+.++||++
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~ 164 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 164 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCC
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHh
Confidence 999999999765321112369999999999999999999999999999999999999888877543 5688999999999
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
.+|.+.+++.+++++++|+..+..++++.++++++|+.+....+++.++++.||++|+++|++++++++++||++.+|++
T Consensus 165 ~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~ 244 (467)
T 2q3e_A 165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244 (467)
T ss_dssp CTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999983221257889999999998832247888999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhc
Q 011650 240 TGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMF 319 (480)
Q Consensus 240 ~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (480)
+|+|++++++++++++|+++.+++||+||||||+|||++++++.|++.|+++..+++++++++|++|+.++++++.+.+.
T Consensus 245 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 324 (467)
T 2q3e_A 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLF 324 (467)
T ss_dssp HTCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCcCHHHHHHHHcCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999888899999999999999999999999999999877889999999999999999999999876
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
+.++++||+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.++..+.+.. ...+.| ....++
T Consensus 325 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~-------~~~~~~--~~~~~~ 395 (467)
T 2q3e_A 325 NTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH-------PGVSED--DQVSRL 395 (467)
T ss_dssp TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC---------------CHHHHH
T ss_pred cccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhcc-------cccccc--ccccCc
Confidence 67899999999999999999999999999999999999999999999987765443310 000000 011135
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh--HHHhhcCcEEEEecCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV--EKLRKIGFIVYSIGKP 468 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~--~~~~~~g~~y~~iG~~ 468 (480)
+++++++++++++||+|||+|+|++|+++||+++...|+.|.+|||+||++++ +++++.||.|+||||+
T Consensus 396 ~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~~~g~~~~~ig~~ 466 (467)
T 2q3e_A 396 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKK 466 (467)
T ss_dssp EEECSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTTTTCHHHHHHHTCEEEETTSC
T ss_pred eeecCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcCCchHHHHHhcCcEEEEeCCC
Confidence 78888999999999999999999999999999999999988669999999998 8999999999999984
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-76 Score=611.63 Aligned_cols=387 Identities=23% Similarity=0.379 Sum_probs=332.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||+++|..|++ ||+|++||+++++++.++++..+++|+++++++.+. .+++++++|+++++++||
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~-~~~l~~ttd~~ea~~~aD 111 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ---NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK-PLNFRATTDKHDAYRNAD 111 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHTTCS
T ss_pred CCEEEEECcCHHHHHHHHHHHc---CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc-cCCeEEEcCHHHHHhCCC
Confidence 6899999999999999999985 799999999999999999999999999999887642 357999999988899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||||.+.+ ...+|++++++++++|.+ ++++++||++||++|||++++.+.+.+. .++|+|||+.
T Consensus 112 vViiaVPt~~~~~----~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~------~v~~sPe~~~ 180 (432)
T 3pid_A 112 YVIIATPTDYDPK----TNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID------NVIFSPEFLR 180 (432)
T ss_dssp EEEECCCCEEETT----TTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC------CEEECCCCCC
T ss_pred EEEEeCCCccccc----cccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc------cEeecCccCC
Confidence 9999999986542 236899999999999999 9999999999999999999998777542 4689999999
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhc--cCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAH--WVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~--~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
||.+..++++|++||+|+. ++..+++.++|.. +....++..+++++||++||++|+|++++|+|+||++.+|+
T Consensus 181 ~G~A~~~~l~p~rIvvG~~-----~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae 255 (432)
T 3pid_A 181 EGRALYDNLHPSRIVIGER-----SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAE 255 (432)
T ss_dssp TTSHHHHHHSCSCEEESSC-----SHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCceEEecCC-----HHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 4567888888876 22223577899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHh
Q 011650 239 ATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSM 318 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~ 318 (480)
++|+|+++|+++++++||||..|++||+||||||||||+++|++.+ .|++ .+++++++++|++||+++++++.+.
T Consensus 256 ~~GiD~~~v~~~~~~dprig~~~~~pg~G~GG~C~pkD~~~L~~~~--~~~~--~~li~~~~~~N~~~~~~v~~~i~~~- 330 (432)
T 3pid_A 256 SQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--ESVP--NNIIAAIVDANRTRKDFIADSILAR- 330 (432)
T ss_dssp HTTCCHHHHHHHHHTSTTTCSSSCCCCSCCCTTTHHHHHHHHHHHT--TTSC--CSHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HcCCCHHHHHHHHccCCCCCcccCCCCCCCcccchhhhHHHHHHHh--cCCc--hhHHHHHHHHHHhhHHHHHHHHHhh-
Confidence 9999999999999999999999999999999999999999998544 5777 6899999999999999999999875
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
.+++|+|||||||+||+|+||||++.|++.|+++|++|.+|||+++.+.. .
T Consensus 331 ----~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~-------------------------~ 381 (432)
T 3pid_A 331 ----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEF-------------------------F 381 (432)
T ss_dssp ----CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSEE-------------------------T
T ss_pred ----cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhhc-------------------------C
Confidence 37899999999999999999999999999999999999999999975321 2
Q ss_pred ceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
+..+++++++++++||+||+.+.|++|+++ .+. +++|++|.++
T Consensus 382 ~~~~~~~~~~~~~~aD~iv~~~~~~~~~~~-----~~~-------~~tr~~~~~~ 424 (432)
T 3pid_A 382 NSRVVRDLNAFKQEADVIISNRMAEELADV-----ADK-------VYTRDLFGND 424 (432)
T ss_dssp TEEECCCHHHHHHHCSEEECSSCCGGGGGG-----GGG-------EECCCSSTTC
T ss_pred CceEECCHHHHHhcCCEEEECCCChHHHHH-----hhc-------cCCCCCCCCc
Confidence 356788999999999999999999998763 221 4999999754
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-75 Score=611.84 Aligned_cols=423 Identities=26% Similarity=0.406 Sum_probs=370.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..+++++++++++.. ...+++++++|+++++++||
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD 78 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence 7999999999999999999998 99999999999999999999999999999988754 22467999999998899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCC---CcEEEEecCCCccc-HHHHHHHHHhh-cC--CCceEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKS---DKIVVEKSTVPVKT-AEAIEKILMHN-SR--GINFQIL 153 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~---~~iVi~~STv~~gt-~~~l~~~l~~~-~~--g~~~~v~ 153 (480)
+||+|||+|.+.++ .+|++++++++++|.+++++ +++|+++||+++|+ .+.+.+.+++. +. +.++.+.
T Consensus 79 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~ 153 (436)
T 1mv8_A 79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG 153 (436)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred EEEEEcCCCcccCC-----CcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEE
Confidence 99999999986643 89999999999999999998 99999999999999 66788888764 32 3578899
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
++||++.+|.+.+++.+++++++|+. ++++.+.++++|+.++. ++..++++.+|+.|++.|++++++++++||+
T Consensus 154 ~~Pe~~~~G~~~~~~~~~~~iv~G~~----~~~~~~~~~~l~~~~~~--~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELDA--PIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSSS--CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcccccccccchhccCCCEEEEEcC----CHHHHHHHHHHHhccCC--CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999998875 47888999999999863 5666899999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhcCCCCCC--CccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHH
Q 011650 234 SALCEATGADVSQVSHAIGFDSRIG--PKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFV 311 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~~~~~i~--~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~ 311 (480)
+.+|+++|+|++++.++++.++|++ +++++||+||||+|++||+.++.+.|++.|++ .+++++++++|+.||++++
T Consensus 228 ~~l~~~~Gid~~~v~~~~~~~~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~--~pl~~~v~~in~~~~~~~~ 305 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQVQKAF 305 (436)
T ss_dssp HHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCC--CTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHhcCCCCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCC--cHHHHHHHHHHhHhHHHHH
Confidence 9999999999999999999999987 77889999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHH---hhhhcccCCCCCCCC
Q 011650 312 NRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQ---RDLQMNKFDWDHPIH 388 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~---~~~~~~~~~~~~~~~ 388 (480)
+++.+. ++++|+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++..... +.|+.. ++
T Consensus 306 ~~~~~~-----~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~------~~- 373 (436)
T 1mv8_A 306 DLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIES------KI- 373 (436)
T ss_dssp HHHTTS-----SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHH------TS-
T ss_pred HHHHHh-----cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhccc------cc-
Confidence 998653 689999999999999999999999999999999999999999995432100 112100 00
Q ss_pred CCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011650 389 LQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGK 467 (480)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
.+... .+++++++++++||+|||+|+|++|+++| .+.|+.| +|||+||+++++. ||.|+||||
T Consensus 374 ------~~~~~-~~~~~~~~~~~~~d~~vi~~~~~~~~~~~----~~~~~~~-~i~D~r~~~~~~~----g~~~~~ig~ 436 (436)
T 1mv8_A 374 ------PHVSS-LLVSDLDEVVASSDVLVLGNGDELFVDLV----NKTPSGK-KLVDLVGFMPHTT----TAQAEGICW 436 (436)
T ss_dssp ------HHHHT-TBCSCHHHHHHHCSEEEECSCCGGGHHHH----HSCCTTC-EEEESSSCCSSSC----CSSEEESCC
T ss_pred ------ccccc-cccCCHHHHHhCCcEEEEeCCcHHHHhhh----HHhcCCC-EEEECCCCCCccc----CcEEEEecC
Confidence 00001 35678899999999999999999999887 4567766 9999999999764 999999996
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-70 Score=562.99 Aligned_cols=396 Identities=22% Similarity=0.351 Sum_probs=342.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||+++|..|++ ||+|++||+++++++.++++..+++|+++++++.. ..+++++++++++++++||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~---G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~~~~l~~t~~~~~~~~~aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL---QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-ccCcEEEeCCHHHHhcCCCE
Confidence 799999999999999999986 69999999999999999999999999988887754 24578899999888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||+|.+.+ +..+|++++++++++|.+ ++++++|+++||+++|+++.+.+.+.+ + .++++||++.+
T Consensus 77 viiavpt~~~~~----~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~-----~-~v~~~Pe~~~~ 145 (402)
T 1dlj_A 77 VIIATPTNYNSR----INYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT-----D-RIIFSPEFLRE 145 (402)
T ss_dssp EEECCCCCEETT----TTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC-----S-CEEECCCCCCT
T ss_pred EEEecCCCcccC----CCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC-----C-eEEECCccccC
Confidence 999999985321 237899999999999999 999999999999999999988766533 2 57899999999
Q ss_pred CccccccCCCCeEEEEccCCc--chHHHHHHHHHHHhc-cCCCC-eEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 162 GTAINDLFKPDRVLIGGRETP--EGMKAIKALKDVYAH-WVPED-RILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~--~~~~~~~~~~~l~~~-~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
|.+..++.+++++++|+.+.. ...+..+.+.++|.. ..+.. +++.++++++||.|+++|++++++++++||++.+|
T Consensus 146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~ 225 (402)
T 1dlj_A 146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA 225 (402)
T ss_dssp TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888889999999986310 012556778888864 43212 47788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSS 317 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~ 317 (480)
+++|+|++++++++++++|++..++.||+||||||+|||++++++.|+ |++ .+++++++++|++||.++++++.+.
T Consensus 226 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~--~~l~~~~~~~N~~~~~~~~~~~~~~ 301 (402)
T 1dlj_A 226 ESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIP--QTLIEAIVSSNNVRKSYIAKQIINV 301 (402)
T ss_dssp HHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSS--CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHhccCCCCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCC--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999888999999999999999999999885 776 6899999999999999999999998
Q ss_pred hcC-CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 318 MFN-TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 318 ~~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
++. .+++++|+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++... ..
T Consensus 302 ~~~~~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~--~~--------------------- 358 (402)
T 1dlj_A 302 LKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SE--------------------- 358 (402)
T ss_dssp HTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TT---------------------
T ss_pred hhhcCCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH--HH---------------------
Confidence 864 678999999999999999999999999999999999999999999976431 10
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
.+.+++.++++++++||+||+.|+|++|+++. + -+.+|.+|.+
T Consensus 359 -~~~~~~~~~~~~~~~~d~~v~~~~h~~~~~~~-----~-------~~~~~~~~~~ 401 (402)
T 1dlj_A 359 -DQSVLVNDLENFKKQANIIVTNRYDNELQDVK-----N-------KVYSRDIFGR 401 (402)
T ss_dssp -CCSEECCCHHHHHHHCSEEECSSCCGGGGGGG-----G-------GEECCCCSSC
T ss_pred -cCCeecCCHHHHHhCCcEEEEecCChHHHHHh-----h-------ccccccccCC
Confidence 12456788999999999999999999998742 1 1458888863
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=263.51 Aligned_cols=249 Identities=18% Similarity=0.206 Sum_probs=201.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||.++|..|+++ ||+|++||+++++++.+++. +++++++++++++ ||+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~-aDv 73 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIEAMTPLAEA-------------------GATLADSVADVAA-ADL 73 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTTTSHHHHHT-------------------TCEECSSHHHHTT-SSE
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCEEcCCHHHHHh-CCE
Confidence 5899999999999999999998 99999999999988887752 3577889999888 999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||++ ..++++++++.+.++++++|+++||++|++++++.+.+++.+ . .++.+|....+
T Consensus 74 vi~~vp~~--------------~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g--~--~~~~~pv~g~~ 135 (296)
T 3qha_A 74 IHITVLDD--------------AQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARD--I--HIVDAPVSGGA 135 (296)
T ss_dssp EEECCSSH--------------HHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGT--C--EEEECCEESCH
T ss_pred EEEECCCh--------------HHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcC--C--EEEeCCCcCCH
Confidence 99999864 235677899999999999999999999999999888887653 2 33456655443
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEATG 241 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g 241 (480)
..+... ...+++|++ ++++++++++|+.++. .++++++++.++++|+++|.+.+.++++++|+..+|++.|
T Consensus 136 ~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G 206 (296)
T 3qha_A 136 AAAARG---ELATMVGAD-----REVYERIKPAFKHWAA-VVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG 206 (296)
T ss_dssp HHHHHT---CEEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcC---CccEEecCC-----HHHHHHHHHHHHHHcC-CeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 322211 114677875 7899999999999863 4566778999999999999999999999999999999999
Q ss_pred CCHHHH------HHHhcCCCCC-----CCcccc-CCCCccc-----cchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 242 ADVSQV------SHAIGFDSRI-----GPKFLN-ASVGFGG-----SCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 242 id~~~v------~~~~~~~~~i-----~~~~~~-pg~g~gG-----~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+|++++ .++++..+.- +.+++. .++||++ .|++||+.++.+.|++.|++ .++++.+.+
T Consensus 207 ~d~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~--~p~~~~~~~ 281 (296)
T 3qha_A 207 LDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVD--LPLARLAYE 281 (296)
T ss_dssp CCHHHHHHHHHHHHHHHCCGGGGCCCSSCSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred CCHHHHhhhcchHHHHhcCcccCHHhhchhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 999999 9988763211 222222 3678888 99999999999999999998 676665543
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-31 Score=262.82 Aligned_cols=250 Identities=16% Similarity=0.156 Sum_probs=205.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||.+|.++ ||+|++||+++++++.+.+. +.+.++++.++++.||
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~a~s~~e~~~~~d 61 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD 61 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTTCS
T ss_pred cCEEEEeeehHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCC
Confidence 77999999999999999999998 99999999999999988752 3567889999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHH---HHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARM---IADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++ ..+++++.. +.+.++++++||++||+.|.+++++.+.+++.+ ..++.+|.
T Consensus 62 vv~~~l~~~--------------~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G----~~~lDaPV 123 (300)
T 3obb_A 62 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV 123 (300)
T ss_dssp EEEECCSCH--------------HHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCE
T ss_pred ceeecCCch--------------HHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEecCC
Confidence 999999864 234555543 677888999999999999999999999888764 34568887
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+....+ .+++||+ ++++++++++|+.+++ ..+++++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 124 sGg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la 194 (300)
T 3obb_A 124 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMGR-NIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALG 194 (300)
T ss_dssp ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCE---EEEEeCC-----HHHHHHHHHHHHHhCC-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766544443322 4788986 8899999999999974 456788999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCc--------------c--ccCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPK--------------F--LNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~--------------~--~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
++.|+|++.+.++++....-++. . -++.++|....+.||+.+..++|++.|++ .++.+.+.
T Consensus 195 ~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~a~ 271 (300)
T 3obb_A 195 VANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASS--TPMGSLAL 271 (300)
T ss_dssp HHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 99999999999998865321110 0 12456788889999999999999999998 66666544
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-31 Score=264.47 Aligned_cols=250 Identities=16% Similarity=0.119 Sum_probs=204.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|+||.++|..|+++ |++|++||+++++++.+.+. ++++++++++++++||
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~e~~~~aD 89 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTPARAASLAAL-------------------GATIHEQARAAARDAD 89 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCEEESSHHHHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHC-------------------CCEeeCCHHHHHhcCC
Confidence 47999999999999999999998 99999999999999988752 3567889999899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH--HHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--MIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~--~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||++. .++.++. ++.+.++++++|+++||++|.+++.+.+.+.+.+ ..++.+|..
T Consensus 90 vVi~~vp~~~--------------~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~ 151 (320)
T 4dll_A 90 IVVSMLENGA--------------VVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALG----IAHLDTPVS 151 (320)
T ss_dssp EEEECCSSHH--------------HHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred EEEEECCCHH--------------HHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcC----CEEEeCCCc
Confidence 9999998642 3456665 7788899999999999999999999888877653 234567766
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+... ...+++|++ ++++++++++|+.+ . .+++.++++.++++|+++|.+.+.++++++|+..+|+
T Consensus 152 g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~-~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~ 221 (320)
T 4dll_A 152 GGTVGAEQG---TLVIMAGGK-----PADFERSLPLLKVF-G-RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFAT 221 (320)
T ss_dssp CHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHH-E-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHhcC---CeeEEeCCC-----HHHHHHHHHHHHhc-C-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332221 124778875 78999999999998 4 5677788999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+.|+|++++.++++.++..++ .++ .+.+||++.|++||+.++.+.+++.|++ .++.+.+.+
T Consensus 222 ~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 291 (320)
T 4dll_A 222 KGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNALATAQEIGFD--APITGLFEQ 291 (320)
T ss_dssp HTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 999999999999987652111 122 3468899999999999999999999998 666665543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-31 Score=264.18 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=204.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. ++++++++++++++||
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~~~~~~aD 79 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTLSKCDELVEH-------------------GASVCESPAEVIKKCK 79 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeEcCCHHHHHHhCC
Confidence 68999999999999999999998 99999999999998887752 3567889999899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++. .+++++ +++.+.++++++|+++||++|++++++.+.+++.+ . .++.+|.
T Consensus 80 vvi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g--~--~~v~~pv 141 (310)
T 3doj_A 80 YTIAMLSDPC--------------AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKG--G--RFVEGPV 141 (310)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEECCE
T ss_pred EEEEEcCCHH--------------HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--EEEeCCC
Confidence 9999998642 345666 77788899999999999999999999888887653 2 2345776
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+... ...+++|++ ++++++++++|+.++. .+++.++++.++++|+++|.+.+.++++++|+..+|
T Consensus 142 ~g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 212 (310)
T 3doj_A 142 SGSKKPAEDG---QLIILAAGD-----KALFEESIPAFDVLGK-RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLA 212 (310)
T ss_dssp ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHhcC---CeEEEEcCC-----HHHHHHHHHHHHHhCC-CEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333221 124677875 7899999999999863 355667899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++.++..++ .++ .+.+||++.|+.||+.++.+.|++.|++ .++.+.+.+
T Consensus 213 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 283 (310)
T 3doj_A 213 DKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVS--MPVAAAANE 283 (310)
T ss_dssp HHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999999987642221 112 3467899999999999999999999998 666665544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=258.57 Aligned_cols=249 Identities=16% Similarity=0.180 Sum_probs=196.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||||||+|+||.+||.+|+++ ||+|++||+++++++.+.+ .+.+.++++.++++.||+|
T Consensus 7 kIgfIGLG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~-------------------~G~~~~~s~~e~~~~~dvv 65 (297)
T 4gbj_A 7 KIAFLGLGNLGTPIAEILLEA--GYELVVWNRTASKAEPLTK-------------------LGATVVENAIDAITPGGIV 65 (297)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEC-------CTTTT-------------------TTCEECSSGGGGCCTTCEE
T ss_pred cEEEEecHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH-------------------cCCeEeCCHHHHHhcCCce
Confidence 899999999999999999998 9999999999998877654 2356788999989999999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHH-HHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESA-ARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~-~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
|+|+|++. .++++ ...+.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|....+
T Consensus 66 i~~l~~~~--------------~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g----~~~ldapVsGg~ 127 (297)
T 4gbj_A 66 FSVLADDA--------------AVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYG----AHYVGAPIFARP 127 (297)
T ss_dssp EECCSSHH--------------HHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEECCH
T ss_pred eeeccchh--------------hHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcC----CceecCCcCCCc
Confidence 99998652 22333 245778889999999999999999999998888764 355789988766
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT-NLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
..+..... .+++||+ ++++++++++|+.++. ..++++ +++.++.+|+++|.+.+.+++.++|...+|++.
T Consensus 128 ~~a~~g~l---~im~gG~-----~~~~~~~~~~l~~~g~-~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~ 198 (297)
T 4gbj_A 128 EAVRAKVG---NICLSGN-----AGAKERIKPIVENFVK-GVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKN 198 (297)
T ss_dssp HHHHHTCC---EEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccc---eeecccc-----hhHHHHHHHHHHHhhC-CeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55543332 5778886 8899999999999874 345566 579999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCcc-------c--cCC-CCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 241 GADVSQVSHAIGFDSRIGPKF-------L--NAS-VGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 241 gid~~~v~~~~~~~~~i~~~~-------~--~pg-~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
|+|+++++++++..+.-++.+ . .+. +||....+.||+.+..++|++.|++ .++.+.+.+
T Consensus 199 Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~~~~ 267 (297)
T 4gbj_A 199 GISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASDVNAP--MPFADIIRN 267 (297)
T ss_dssp TCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence 999999999998765322211 1 223 4788889999999999999999998 666665443
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=253.38 Aligned_cols=252 Identities=16% Similarity=0.118 Sum_probs=204.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. +++.++++++++++||
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD 59 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSPEKAEELAAL-------------------GAERAATPCEVVESCP 59 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 38999999999999999999998 99999999999998887752 3567889999899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++ ..+++++ +++.+.++++++|+++||++|.+++++.+.+++.+ . .++.+|.
T Consensus 60 vvi~~vp~~--------------~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g--~--~~~~~pv 121 (287)
T 3pef_A 60 VTFAMLADP--------------AAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKG--G--RFLEAPV 121 (287)
T ss_dssp EEEECCSSH--------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEECCE
T ss_pred EEEEEcCCH--------------HHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhC--C--EEEECCC
Confidence 999999864 2356667 78888999999999999999999999888877653 2 2345776
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+... ...+++|++ +++.++++++|+.++. .+++.++.+.+++.|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~ 192 (287)
T 3pef_A 122 SGSKKPAEDG---TLIILAAGD-----RNLYDEAMPGFEKMGK-KIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALG 192 (287)
T ss_dssp ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcC---CEEEEEeCC-----HHHHHHHHHHHHHhCC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554333221 114677775 7899999999999863 456667899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKV 302 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (480)
++.|+|++++.++++.++..++ .++ .+.+||++.|+.||..++.+.|++.|++ .++.+.+.+.
T Consensus 193 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~ 264 (287)
T 3pef_A 193 EKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQP--LVASAAANEL 264 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 9999999999999986542111 112 3467899999999999999999999998 6776665443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=253.85 Aligned_cols=251 Identities=16% Similarity=0.149 Sum_probs=202.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. ++++++++++++++||
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~ad 59 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNPAKCAPLVAL-------------------GARQASSPAEVCAACD 59 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH--TCCEEEECSSGGGGHHHHHH-------------------TCEECSCHHHHHHHCS
T ss_pred CCeEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHHcCC
Confidence 78999999999999999999998 99999999999998887652 3567889999899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|||++ ..+++++ +++.+.++++++|+++||+.|.+++++.+.+++.+ . .++.+|.
T Consensus 60 vvi~~v~~~--------------~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g--~--~~~~~pv 121 (287)
T 3pdu_A 60 ITIAMLADP--------------AAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARG--G--RFLEAPV 121 (287)
T ss_dssp EEEECCSSH--------------HHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEECCE
T ss_pred EEEEEcCCH--------------HHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcC--C--EEEECCc
Confidence 999999864 2345666 77788899999999999999999999888777653 2 3345565
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+.... ..+++|++ ++..++++++|+.++. .+++.++++.+++.|+++|.+.+.++++++|+..+|
T Consensus 122 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (287)
T 3pdu_A 122 SGTKKPAEDGT---LIILAAGD-----QSLFTDAGPAFAALGK-KCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALG 192 (287)
T ss_dssp ECCHHHHHHTC---EEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCC---EEEEEeCC-----HHHHHHHHHHHHHhCC-CEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432221111 14677775 7899999999999863 355667899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++..+..++ .++ .+.+||++.|+.||..++.+.|++.|++ .++.+.+.+
T Consensus 193 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~ 263 (287)
T 3pdu_A 193 RNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQP--LHGAATANE 263 (287)
T ss_dssp HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999999987542111 122 3467899999999999999999999998 666666544
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=252.94 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=199.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||.++|..|+++ ||+|++||+++++++.+.+. +...+++++++++++||+
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~~e~~~~aDv 67 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE------------------GACGAAASAREFAGVVDA 67 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------TCSEEESSSTTTTTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc------------------CCccccCCHHHHHhcCCE
Confidence 7899999999999999999998 99999999999999988753 112236778888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .++.++ +++.+.++++++|+++||++|.+++.+.+.+++.+ . .++.+|..
T Consensus 68 vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g--~--~~~~~pv~ 129 (303)
T 3g0o_A 68 LVILVVNAA--------------QVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALN--L--NMLDAPVS 129 (303)
T ss_dssp EEECCSSHH--------------HHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTT--C--EEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcC--C--eEEeCCCC
Confidence 999998642 245555 67788899999999999999999998888777653 2 23447765
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN-LWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
..+..+... ...+++|++ ++..++++++|+.++. .+++.++ ++.+++.|+++|.+.++++++++|+..+|
T Consensus 130 g~~~~a~~g---~l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~ 200 (303)
T 3g0o_A 130 GGAVKAAQG---EMTVMASGS-----EAAFTRLKPVLDAVAS-NVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALA 200 (303)
T ss_dssp SCHHHHHTT---CEEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhcC---CeEEEeCCC-----HHHHHHHHHHHHHHCC-CEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332211 114677764 7899999999999863 3455666 89999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
++.|+|++++.++++.....++ .++ .+.+||+..|+.||+.++++.|++.|++ .++.+.+.+
T Consensus 201 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~--~p~~~~~~~ 271 (303)
T 3g0o_A 201 ARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP--LPLASTALN 271 (303)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999999987542111 112 2467899999999999999999999998 666665544
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=239.14 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=180.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCH-------HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec-C
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV-------PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST-D 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~-------~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~-d 71 (480)
+|||+|||+|+||.++|..|+++ | |+|++||+++ +..+.+.+ .+ + ++ +
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~~~~~------------------~g-~--~~~s 80 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRFNDPAASGALRARAAE------------------LG-V--EPLD 80 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGGGCTTTHHHHHHHHHH------------------TT-C--EEES
T ss_pred CCeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCCccccchHHHHHHHHH------------------CC-C--CCCC
Confidence 47899999999999999999998 9 9999999997 34444332 12 3 44 6
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceE
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQ 151 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (480)
+++++++||+||+|||++.. .+.++++.+.++++++||++||++|++++++.+.+++.+ ..|
T Consensus 81 ~~e~~~~aDvVi~avp~~~~---------------~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g--~~~- 142 (317)
T 4ezb_A 81 DVAGIACADVVLSLVVGAAT---------------KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGK--GSF- 142 (317)
T ss_dssp SGGGGGGCSEEEECCCGGGH---------------HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSS--CEE-
T ss_pred HHHHHhcCCEEEEecCCHHH---------------HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeE-
Confidence 77888999999999986521 334588999999999999999999999999988887653 232
Q ss_pred EeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHHHHHHHHHHHHHHHHH
Q 011650 152 ILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN-LWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 152 v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
+.+|....+. +..+ ...+++|+. ++ ++++++|+.++. ..++.++ ++.|+++|+++|++.+++++++
T Consensus 143 -~d~pv~g~~~-a~~g---~l~i~vgg~-----~~--~~~~~ll~~~g~-~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~ 209 (317)
T 4ezb_A 143 -VEGAVMARVP-PYAE---KVPILVAGR-----RA--VEVAERLNALGM-NLEAVGETPGQASSLKMIRSVMIKGVEALL 209 (317)
T ss_dssp -EEEEECSCST-TTGG---GSEEEEEST-----TH--HHHHHHHHTTTC-EEEEEESSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -EeccCCCCch-hhcC---CEEEEEeCC-----hH--HHHHHHHHHhCC-CeEEeCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 2334332111 1111 125788886 22 789999999863 4555665 8999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCC-CCCC-----ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHH
Q 011650 231 NAMSALCEATGADVSQVSHAIGFDS-RIGP-----KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKV 302 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~~~~-~i~~-----~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (480)
+|+..+|+++|+|+ ++++.+.... +..+ .++ .+.+||+ ++||+.++.+.|++.|++ .++.+.+.++
T Consensus 210 ~E~~~la~~~Gid~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~ 283 (317)
T 4ezb_A 210 IEALSSAERAGVTE-RILDSVQETFPGLDWRDVADYYLSRTFEHGAR---RVTEMTEAAETIESFGLN--APMSRAACET 283 (317)
T ss_dssp HHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHhcCccccHHHhhhhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 99999999999999 5666665432 2111 112 1334444 799999999999999998 6777765544
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=234.98 Aligned_cols=248 Identities=10% Similarity=0.054 Sum_probs=187.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC--HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS--VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~--~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
||||+|||+|+||.++|..|+++ || +|++||++ +++.+.+.+. +++.+++++++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~-------------------g~~~~~~~~e~~~ 82 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAASAESWRPRAEEL-------------------GVSCKASVAEVAG 82 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSSCHHHHHHHHHHT-------------------TCEECSCHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCCCCHHHHHHHHHC-------------------CCEEeCCHHHHHh
Confidence 57999999999999999999998 99 99999997 5777766541 3567788988899
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|||++.. .++++++.+.++++++|+++||+.|++++.+.+.+.+...|..| +.+|.
T Consensus 83 ~aDvVi~~vp~~~~---------------~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~--vd~pv 145 (312)
T 3qsg_A 83 ECDVIFSLVTAQAA---------------LEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQY--AAVAV 145 (312)
T ss_dssp HCSEEEECSCTTTH---------------HHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEE--EEEEE
T ss_pred cCCEEEEecCchhH---------------HHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeE--Eeccc
Confidence 99999999997531 34568899999999999999999999999988877765212232 33444
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN-LWSAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
...+..+ .. ...+++|+. ++ ++++++|+.++. ..++.++ ++.++++|+++|++.+.++++++|+..+
T Consensus 146 ~g~~~~~-~g---~l~i~vgg~-----~~--~~~~~ll~~~g~-~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 213 (312)
T 3qsg_A 146 MSAVKPH-GH---RVPLVVDGD-----GA--RRFQAAFTLYGC-RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAA 213 (312)
T ss_dssp CSCSTTT-GG---GSEEEEEST-----TH--HHHHHHHHTTTC-EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhh-cC---CEEEEecCC-----hH--HHHHHHHHHhCC-CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222 11 125778876 22 889999999863 3445555 8999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHhcCCC--C----CCCcccc--CCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHhh
Q 011650 237 CEATGADVSQVSHAIGFDS--R----IGPKFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVND 304 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~~~--~----i~~~~~~--pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~ 304 (480)
|+++|+|+ ++++.++... + ++..++. +++||. +.||+.++++.+++.|++ .++++.+.+.-+
T Consensus 214 a~~~Gld~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~~~ 283 (312)
T 3qsg_A 214 AEKMGLAD-RVLASLDASFPEHHLRDLALYLVERNLEHADR---RAHELGEVAATLCSVGVE--PLVAEAGYRRLT 283 (312)
T ss_dssp HHTTTCHH-HHHHHHHHHSGGGTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHcCCCH-HHHHHHHhcCCchhHHHhhhHhhcCCCCcccc---hHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Confidence 99999999 6888887542 1 0111221 334443 489999999999999998 677777665443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=223.41 Aligned_cols=246 Identities=11% Similarity=0.074 Sum_probs=185.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||.++|..|+++ |++|++||+++++++.+.+. +...++++++++++||
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~aD 67 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQ--GKRVAIWNRSPGKAAALVAA-------------------GAHLCESVKAALSASP 67 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHH-------------------TCEECSSHHHHHHHSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 36899999999999999999998 99999999999998887641 2456788999899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH--HHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--MIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~--~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+||+|||++. .+++++. .+.. +.++++||++||+.|.+++++.+.+++.+ ..| +.+|..
T Consensus 68 vVi~~vp~~~--------------~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g--~~~--vdapv~ 128 (306)
T 3l6d_A 68 ATIFVLLDNH--------------ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAG--GHY--VKGMIV 128 (306)
T ss_dssp EEEECCSSHH--------------HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTT--CEE--EEEEEE
T ss_pred EEEEEeCCHH--------------HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcC--CeE--Eecccc
Confidence 9999998642 2345554 5544 46899999999999999999888777653 232 344544
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe--CC-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC--TN-LWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~--~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
..+...-.. ...+++|++ ++++++++++|+.++. .++++ ++ ++.+++.| .+.+.++++++|...
T Consensus 129 g~~~~~~~~---~~~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~ 195 (306)
T 3l6d_A 129 AYPRNVGHR---ESHSIHTGD-----REAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVG 195 (306)
T ss_dssp SCGGGTTCT---TCEEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cCcccccCC---ceEEEEcCC-----HHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHH
Confidence 322111100 114778875 7899999999999853 34555 44 78899999 345678999999999
Q ss_pred HHHHcCCCHHHHHHHhcCCC--CCCC-------ccc--cCCC-CccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 236 LCEATGADVSQVSHAIGFDS--RIGP-------KFL--NASV-GFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 236 l~~~~gid~~~v~~~~~~~~--~i~~-------~~~--~pg~-g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+|++.|+|++++.++++... ..++ .++ .+.+ +|...|+.||+.++++.+++.|++ .++.+.+.+
T Consensus 196 la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~ 271 (306)
T 3l6d_A 196 AGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVW--TPVFDAVCQ 271 (306)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCC--chHHHHHHH
Confidence 99999999999999987642 1111 112 2333 368899999999999999999998 677776554
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=221.42 Aligned_cols=246 Identities=15% Similarity=0.196 Sum_probs=193.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA-- 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a-- 79 (480)
|||+|||+|.||.++|.+|+++ ||+|++||+++++++.+.+. ++..+++++++++.+
T Consensus 23 mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~a~~ 81 (358)
T 4e21_A 23 MQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-------------------GIAGARSIEEFCAKLVK 81 (358)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCBCCSSHHHHHHHSCS
T ss_pred CEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCEEeCCHHHHHhcCCC
Confidence 7999999999999999999998 99999999999999988763 244567888888888
Q ss_pred -CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 -NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 -DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||++ .++++++++.+.++++++||+.||+.+.+++++.+.+.+.+ .. ++.+|..
T Consensus 82 ~DvVi~~vp~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~--~vdapVs 142 (358)
T 4e21_A 82 PRVVWLMVPAA---------------VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQG--IT--YVDVGTS 142 (358)
T ss_dssp SCEEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTT--CE--EEEEEEE
T ss_pred CCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCC--CE--EEeCCCC
Confidence 9999999863 24677889999999999999999999999988887776653 22 2344544
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC-------------------CCeEEeCCchhHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP-------------------EDRILCTNLWSAEVSKLAA 219 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~v~~~~~~~ae~~Kl~~ 219 (480)
..+..+... +.+++|++ ++++++++++|+.++. ...+++++.++++++|+++
T Consensus 143 Gg~~~a~~G----~~im~GG~-----~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~ 213 (358)
T 4e21_A 143 GGIFGLERG----YCLMIGGE-----KQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVH 213 (358)
T ss_dssp CGGGHHHHC----CEEEEESC-----HHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHH
T ss_pred CCHHHHhcC----CeeeecCC-----HHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHH
Confidence 333222222 15788985 7899999999999872 1356778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHc------------------------CCCHHHHHHHhcCCCCCCCccc---------cCCC
Q 011650 220 NAFLAQRISSVNAMSALCEAT------------------------GADVSQVSHAIGFDSRIGPKFL---------NASV 266 (480)
Q Consensus 220 N~~~~~~ia~~nE~~~l~~~~------------------------gid~~~v~~~~~~~~~i~~~~~---------~pg~ 266 (480)
|.+.+.+++.++|...++++. |+|..++.+.++.+..+++.++ .|+.
T Consensus 214 n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~p~~ 293 (358)
T 4e21_A 214 NGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPDL 293 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhCCCh
Confidence 999999999999999999998 8999999999998764433322 2433
Q ss_pred -CccccchhhhH---HHHHHHHHHCCCchhhhHHHHHH
Q 011650 267 -GFGGSCFQKDI---LNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 267 -g~gG~c~~kD~---~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
.|.+. .+|. +..+..|.+.|+| ++++.+++
T Consensus 294 ~~~~~~--~~d~g~~r~~~~~A~~~gvp--~p~~~~al 327 (358)
T 4e21_A 294 QEFQGR--VSDSGEGRWTVAAAIDEGVP--AHVLSSAL 327 (358)
T ss_dssp TTC--C--CCCCSHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHcCCC--hHHHHHHH
Confidence 13332 3444 5678889999999 77777654
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=214.15 Aligned_cols=250 Identities=18% Similarity=0.220 Sum_probs=194.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|++. |++|++||+++++.+.+++. ++..+++++++++++|+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D~ 64 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV 64 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred ceEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCCE
Confidence 6999999999999999999998 99999999999998887752 24567788888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|+|++. .++.++ +++.+.++++++|++.|+..+.+.+.+.+.+.+.+ . .++.+|..
T Consensus 65 vi~~v~~~~--------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g--~--~~~~~pv~ 126 (299)
T 1vpd_A 65 IITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG--V--EMLDAPVS 126 (299)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT--C--EEEECCEE
T ss_pred EEEECCCHH--------------HHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--eEEEecCC
Confidence 999998642 235555 57778899999999999998888888887776543 2 33455655
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+... ...+++|+. ++..+.++++|+.++. ..++.++.+.+.+.|++.|.+.++.+++++|+..+++
T Consensus 127 ~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~ 197 (299)
T 1vpd_A 127 GGEPKAIDG---TLSVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLAT 197 (299)
T ss_dssp SHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHhcC---CEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222211 124566763 7789999999998753 3455678899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~-------~~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+.|+|++++.+.+.....-+ +.++ ...+|+...++.||..++.+.+++.|++ .++.+.+.+
T Consensus 198 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~ 267 (299)
T 1vpd_A 198 KAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQ--LPLTAAVME 267 (299)
T ss_dssp HTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 99999999999987653111 1111 1356788899999999999999999998 666665443
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=214.80 Aligned_cols=252 Identities=18% Similarity=0.158 Sum_probs=193.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||..+|..|++. |++|++|| ++++++.+.+. ++..+++++++++++|
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~-~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D 60 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA--GHQLHVTT-IGPVADELLSL-------------------GAVNVETARQVTEFAD 60 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT--TCEEEECC-SSCCCHHHHTT-------------------TCBCCSSHHHHHHTCS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC--CCEEEEEc-CHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 68999999999999999999998 99999999 98888777652 1334567888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH---HHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|.+. .+..++. ++.+.++++++|++.|+..+.+.+.+.+.+.+.+ +.++.+|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~p~ 122 (295)
T 1yb4_A 61 IIFIMVPDTP--------------QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMG----ADYLDAPV 122 (295)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCE
T ss_pred EEEEECCCHH--------------HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEccC
Confidence 9999998642 2345555 6677788899999999888888888887776532 33346676
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+..+ ...+++|+. ++..+++.++|+.++. ..++.++.+.+.+.|++.|.+..+.+++++|+..++
T Consensus 123 ~~~~~~a~~g---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~ 193 (295)
T 1yb4_A 123 SGGEIGAREG---TLSIMVGGE-----QKVFDRVKPLFDILGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFA 193 (295)
T ss_dssp ESHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHcC---CeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543222111 113566763 7788999999998863 345567889999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHHh
Q 011650 238 EATGADVSQVSHAIGFDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVN 303 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~-------~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (480)
++.|+|++++.+.+.....-++ .++ ...+|+...++.||+.++++.+++.|++ .++.+.+.+..
T Consensus 194 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~ 266 (295)
T 1yb4_A 194 SKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLNLALQSAKALALN--LPNTATCQELF 266 (295)
T ss_dssp HHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 9999999999999986542111 111 2346788899999999999999999998 67666665543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-24 Score=208.48 Aligned_cols=250 Identities=15% Similarity=0.177 Sum_probs=188.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|++. |++|++||+++++++.+++. +++++++++++++++|+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv 59 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH--GYPLIIYDVFPDACKEFQDA-------------------GEQVVSSPADVAEKADR 59 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT--TCCEEEECSSTHHHHHHHTT-------------------TCEECSSHHHHHHHCSE
T ss_pred CeEEEEeccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 7999999999999999999998 99999999999999888752 35567788888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHH---HHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARM---IADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||.+. .++.++.. +.+.++++++|++.|++++.+.+++.+.+.+.+ .. +..+|..
T Consensus 60 vi~~vp~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g--~~--~~~~p~~ 121 (296)
T 2gf2_A 60 IITMLPTSI--------------NAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMG--AV--FMDAPVS 121 (296)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CE--EEECCEE
T ss_pred EEEeCCCHH--------------HHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CE--EEEcCCC
Confidence 999998642 23455544 345678899999888999888888777666542 22 3456755
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..+... ...+++|+. ++..+.++++|+.++. ..+..+..+.+.+.|+++|.+.++.+++++|+..+++
T Consensus 122 ~g~~~a~~~---~~~~~~~~~-----~~~~~~v~~l~~~~g~-~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~ 192 (296)
T 2gf2_A 122 GGVGAARSG---NLTFMVGGV-----EDEFAAAQELLGCMGS-NVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGI 192 (296)
T ss_dssp SHHHHHHHT---CEEEEEESC-----GGGHHHHHHHHTTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhcC---cEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432111111 113566653 6678899999998753 3455567788999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCC---------Cccc-------cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIG---------PKFL-------NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~---------~~~~-------~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+.|+|++++.+++......+ +..+ ...+||...++.||..++.+++++.|++ .++.+.+.+
T Consensus 193 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~ 269 (296)
T 2gf2_A 193 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSP--ILLGSLAHQ 269 (296)
T ss_dssp HTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 99999999999887532110 0011 2235688889999999999999999998 666555443
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=201.45 Aligned_cols=252 Identities=16% Similarity=0.182 Sum_probs=193.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||..+|..|++. |++|++||+++++.+.+.+. ++..++++++++.++|
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D 62 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKE--GVTVYAFDLMEANVAAVVAQ-------------------GAQACENNQKVAAASD 62 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHTT-------------------TCEECSSHHHHHHHCS
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCC
Confidence 37899999999999999999998 99999999999998887752 2456778888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHH---HHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+|+|.+. .++.++. ++.+.++++++|++.|+..+++.+.+.+.+.+.+ . .++.+|.
T Consensus 63 ~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g--~--~~~~~p~ 124 (301)
T 3cky_A 63 IIFTSLPNAG--------------IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKG--I--DYVDAPV 124 (301)
T ss_dssp EEEECCSSHH--------------HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTT--C--EEEECCE
T ss_pred EEEEECCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--eEEEccC
Confidence 9999998642 2455564 7778899999999988888888888887776642 2 2345675
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
...+..+.. ....+++|+. ++..+.++++|+.++. ..++.++.+.+.+.|++.|.+..+.+++++|+..++
T Consensus 125 ~~~~~~a~~---g~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~ 195 (301)
T 3cky_A 125 SGGTKGAEA---GTLTIMVGAS-----EAVFEKIQPVLSVIGK-DIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLG 195 (301)
T ss_dssp ESHHHHHHH---TCEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHc---CCeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443311111 1113556663 7788999999998753 344567789999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCC-------CCC-ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSR-------IGP-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKV 302 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~-------i~~-~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (480)
++.|+|.+++.+.+..... ..+ ..+ ...+|+...++.||..++++.+++.|++ .++.+.+.+.
T Consensus 196 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~~ 268 (301)
T 3cky_A 196 VKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVP--LPMTAMATQI 268 (301)
T ss_dssp HHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Confidence 9999999999998875421 112 222 2346788889999999999999999998 6666655443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=217.93 Aligned_cols=207 Identities=11% Similarity=0.143 Sum_probs=166.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh---
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
||+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... ..++..+++++++++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------g~~i~~~~s~~e~v~~l~ 67 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK--------------GTKVVGAQSLKEMVSKLK 67 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT--------------TSSCEECSSHHHHHHTBC
T ss_pred CCEEEEEChhHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcccC--------------CCceeccCCHHHHHhhcc
Confidence 58999999999999999999998 99999999999999998763210 124566788888776
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
.+|+||+|||++ ..++++++++.++++++++||+.||+.+.++.++.+.+.+.+ .. ++.+|.
T Consensus 68 ~aDvVil~Vp~~--------------~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~G--i~--fvd~pV 129 (484)
T 4gwg_A 68 KPRRIILLVKAG--------------QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG--IL--FVGSGV 129 (484)
T ss_dssp SSCEEEECSCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CE--EEEEEE
T ss_pred CCCEEEEecCCh--------------HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhc--cc--cccCCc
Confidence 599999999864 235778899999999999999999999988888777776653 22 234454
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCe-------EEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDR-------ILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
...+..+.. .+.+++||+ ++++++++++|+.++. .. +++++.+.++.+|+++|.+.+.+++++
T Consensus 130 sGg~~gA~~----G~~im~GG~-----~ea~~~v~pll~~ig~-~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~i 199 (484)
T 4gwg_A 130 SGGEEGARY----GPSLMPGGN-----KEAWPHIKTIFQGIAA-KVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLI 199 (484)
T ss_dssp ESHHHHHHH----CCEEEEEEC-----GGGHHHHHHHHHHHSC-BCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhc----CCeeecCCC-----HHHHHHHHHHHHHhcC-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence 443322221 226788985 6789999999998864 22 456778999999999999999999999
Q ss_pred HHHHHHHHH-cCCCHHHHHHHh
Q 011650 231 NAMSALCEA-TGADVSQVSHAI 251 (480)
Q Consensus 231 nE~~~l~~~-~gid~~~v~~~~ 251 (480)
+|+..++++ +|+|++++.+++
T Consensus 200 aEa~~l~~~~~Gld~~~l~~v~ 221 (484)
T 4gwg_A 200 CEAYHLMKDVLGMAQDEMAQAF 221 (484)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999 999999988876
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-23 Score=204.16 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=187.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|++. |++|++||+++++++.+.+. ++..+++++++++++|+
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv 89 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM--GHTVTVWNRTAEKCDLFIQE-------------------GARLGRTPAEVVSTCDI 89 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSGGGGHHHHHT-------------------TCEECSCHHHHHHHCSE
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCCE
Confidence 7899999999999999999998 99999999999988877642 23556788888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHH---HhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMI---ADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i---~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++. .++.++..+ .+.++++++|++.|++.+.+.+.+.+.+.+.+ . .++.+|..
T Consensus 90 Vi~av~~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~--~--~~v~~p~~ 151 (316)
T 2uyy_A 90 TFACVSDPK--------------AAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRG--G--RFLEAPVS 151 (316)
T ss_dssp EEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--C--EEEECCEE
T ss_pred EEEeCCCHH--------------HHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--EEEEcCcc
Confidence 999998642 234555443 36788899999999988888888877775532 2 23345543
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+..... ....+++|++ ++..+.+.++|+.++. ..++.++++.+.+.|++.|.+....+++++|+..+++
T Consensus 152 g~~~~~~~---g~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~ 222 (316)
T 2uyy_A 152 GNQQLSND---GMLVILAAGD-----RGLYEDCSSCFQAMGK-TSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQ 222 (316)
T ss_dssp SCHHHHHH---TCEEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHhh---CCEEEEeCCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 1113556764 6788999999998853 3344568899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCCCc-------cc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIGPK-------FL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~~~-------~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+.|++.+++.+++.....-++. .+ ...+|+...++.||..++++.+++.|++ .++.+.+.+
T Consensus 223 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~~ 292 (316)
T 2uyy_A 223 VTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHP--TPMAAAANE 292 (316)
T ss_dssp HTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence 9999999999988755321111 11 2456788889999999999999999998 666665443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=209.57 Aligned_cols=280 Identities=13% Similarity=0.125 Sum_probs=202.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|||+|||+|+||+++|..|+++ ||+|++||+++++++.+++ +..+.+.|+.. ...++++++|+++++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~------l~~~i~~t~d~~ea~~~a 100 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYP------FPETLKAYCDLKASLEGV 100 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCC------CCTTEEEESCHHHHHTTC
T ss_pred CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCc------cCCCeEEECCHHHHHhcC
Confidence 37999999999999999999998 9999999999999999987 44555555542 135688999999889999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||+|||+ ..++++++++.++++++++|+..++ +.+++ +.+.+.+++..++..+.+..+|++
T Consensus 101 DvVilaVp~---------------~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~~~~~vlsgP~~ 164 (356)
T 3k96_A 101 TDILIVVPS---------------FAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQVPMAVISGPSL 164 (356)
T ss_dssp CEEEECCCH---------------HHHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCSCCEEEEESSCC
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCCCCEEEEECccH
Confidence 999999985 2468899999999999998877664 67777 666666665433345678899998
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH-----------------HHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK-----------------LAANA 221 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K-----------------l~~N~ 221 (480)
..+... ..|..+++++. +++..+.++++|+..+ ...+...|+..+||.| +..|+
T Consensus 165 a~ev~~----g~pt~~via~~----~~~~~~~v~~lf~~~~-~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~ 235 (356)
T 3k96_A 165 ATEVAA----NLPTAVSLASN----NSQFSKDLIERLHGQR-FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNA 235 (356)
T ss_dssp HHHHHT----TCCEEEEEEES----CHHHHHHHHHHHCCSS-EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHc----CCCeEEEEecC----CHHHHHHHHHHhCCCC-eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchH
Confidence 875432 34556777776 4788999999999754 2345568998888865 45567
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC-------CCCCccc---cCCCCcc----------ccchhhhHHHHH
Q 011650 222 FLAQRISSVNAMSALCEATGADVSQVSHAIGFDS-------RIGPKFL---NASVGFG----------GSCFQKDILNLV 281 (480)
Q Consensus 222 ~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~-------~i~~~~~---~pg~g~g----------G~c~~kD~~~l~ 281 (480)
..++.+.+++|+.++|+++|+|++++.+..+... ..+.|+. .-|-|.. .--=.++...+.
T Consensus 236 ~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~ 315 (356)
T 3k96_A 236 RAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVH 315 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHH
Confidence 7888999999999999999999998876533210 0111110 0000100 011235677888
Q ss_pred HHHHHCCCchhhhHHHHHHHH--hhHhHHHHHHHHH
Q 011650 282 YICECNGLPEVANYWKQVIKV--NDYQKTRFVNRVV 315 (480)
Q Consensus 282 ~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (480)
.+++++|++ .|+.+++.++ ++.-|...++.++
T Consensus 316 ~la~~~~v~--~Pi~~~v~~il~~~~~~~~~~~~l~ 349 (356)
T 3k96_A 316 ALAQKHAIE--MPLTFQVHRILHEDLDPQQAVQELL 349 (356)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 888888887 7777776543 3444555555443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-23 Score=200.30 Aligned_cols=249 Identities=16% Similarity=0.150 Sum_probs=187.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||..+|..|++ |++|++||+++++.+.+.+. ++..++ +++++.++|
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~-~~~~~~~~D 57 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE-------------------FGSEAV-PLERVAEAR 57 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH-------------------HCCEEC-CGGGGGGCS
T ss_pred CCeEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC-------------------CCcccC-HHHHHhCCC
Confidence 7899999999999999999986 68999999999998887641 112233 566688999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|++. .+..+++++.+.++++++|++.|+..+.+.+.+.+.+.+.+ ..++.+|....
T Consensus 58 ~vi~~v~~~~--------------~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~p~~~~ 119 (289)
T 2cvz_A 58 VIFTCLPTTR--------------EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG----VTYLDAPVSGG 119 (289)
T ss_dssp EEEECCSSHH--------------HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCEESH
T ss_pred EEEEeCCChH--------------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEEecCCCC
Confidence 9999998642 24567788888899999999999988888888877776532 23345564332
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEAT 240 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (480)
+..+.. ....+++|+. ++..+.++++| .++. ..+..++.+.+.+.|++.|++..+.+.+++|+..++++.
T Consensus 120 ~~~~~~---g~~~~~~~~~-----~~~~~~~~~ll-~~g~-~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 189 (289)
T 2cvz_A 120 TSGAEA---GTLTVMLGGP-----EEAVERVRPFL-AYAK-KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ 189 (289)
T ss_dssp HHHHHH---TCEEEEEESC-----HHHHHHHGGGC-TTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhh---CCeEEEECCC-----HHHHHHHHHHH-hhcC-CeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 211111 1113556653 77889999999 8752 345667889999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCC-------CCC-ccc--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHHH
Q 011650 241 GADVSQVSHAIGFDSR-------IGP-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKV 302 (480)
Q Consensus 241 gid~~~v~~~~~~~~~-------i~~-~~~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (480)
|+|++++.+.+..... .++ ..+ ...+|+...++.||..++.+.+++.|++ .++.+.+.+.
T Consensus 190 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~~~ 259 (289)
T 2cvz_A 190 GVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAP--SPLLRLAREV 259 (289)
T ss_dssp TCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCC--CHHHHHHHHH
T ss_pred CcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 9999999999876531 111 122 2346778889999999999999999998 6666655543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=206.96 Aligned_cols=252 Identities=12% Similarity=0.082 Sum_probs=185.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
.+|+|||+|.||.+||.+|+++ ||+|++||+++++++.++++..+ + .+++.+++++++++.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----~----------~gi~~~~s~~e~v~~l~~ 74 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH--GFTVCAYNRTQSKVDHFLANEAK----G----------KSIIGATSIEDFISKLKR 74 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSHHHHHHHHTTTT----T----------SSEECCSSHHHHHHTSCS
T ss_pred CCEEEEeeHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHccccc----C----------CCeEEeCCHHHHHhcCCC
Confidence 4799999999999999999998 99999999999999998863211 0 247778899887776
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..++++++++.+.++++++||+.||+.+.+++++.+.+++.+ ..| +..|..
T Consensus 75 aDvVil~Vp~~--------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g--~~~--v~~pVs 136 (497)
T 2p4q_A 75 PRKVMLLVKAG--------------APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKG--ILF--VGSGVS 136 (497)
T ss_dssp SCEEEECCCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CEE--EEEEEE
T ss_pred CCEEEEEcCCh--------------HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcC--Cce--eCCCcc
Confidence 99999999864 235778889999999999999999998888888877776643 232 234433
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED------RILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
..|..+. ..+.+++|+. +++.++++++|+.++. . +.+.+..+.+.++|++.|.+.+..+..++|
T Consensus 137 gg~~~a~----~G~~im~gg~-----~e~~~~v~~ll~~~g~-~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laE 206 (497)
T 2p4q_A 137 GGEEGAR----YGPSLMPGGS-----EEAWPHIKNIFQSISA-KSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICE 206 (497)
T ss_dssp SHHHHHH----HCCEEEEEEC-----GGGHHHHHHHHHHHSC-EETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHhh----cCCeEEecCC-----HHHHHHHHHHHHHhcC-ccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 1224777875 6788999999998864 2 344556789999999999999999999999
Q ss_pred HHHHHHH-cCCCHHHHHHHhc---CCCCCCCc-------cc--cCCCCccccchh-----hhHH-HHHHHHHHCCCchhh
Q 011650 233 MSALCEA-TGADVSQVSHAIG---FDSRIGPK-------FL--NASVGFGGSCFQ-----KDIL-NLVYICECNGLPEVA 293 (480)
Q Consensus 233 ~~~l~~~-~gid~~~v~~~~~---~~~~i~~~-------~~--~pg~g~gG~c~~-----kD~~-~l~~~a~~~g~~~~~ 293 (480)
+..++++ +|+|++++.+++. ....-++. +. .+..++-...+. ||+. .....|++.|++ .
T Consensus 207 a~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~--~ 284 (497)
T 2p4q_A 207 AYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMP--V 284 (497)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCC--C
T ss_pred HHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCC--C
Confidence 9999999 6999999998883 22110000 01 111123333444 7765 567899999998 5
Q ss_pred hHHHHH
Q 011650 294 NYWKQV 299 (480)
Q Consensus 294 ~~~~~~ 299 (480)
+++..+
T Consensus 285 P~~~~a 290 (497)
T 2p4q_A 285 TLIGEA 290 (497)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 665553
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-20 Score=193.78 Aligned_cols=255 Identities=15% Similarity=0.113 Sum_probs=183.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE-- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (480)
|||+|||+|.||..+|..|+++ ||+|++||+++++++.+++. ... +. ..++..+++++++++.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~g~~---~~---------~~~i~~~~~~~e~v~~l~ 67 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASA---PF---------AGNLKAFETMEAFAASLK 67 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTS---TT---------GGGEEECSCHHHHHHHBC
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcCCC---CC---------CCCeEEECCHHHHHhccc
Confidence 7999999999999999999998 99999999999999988752 111 10 0236788899887764
Q ss_pred -CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 79 -ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|+||+|||++ ..+.++++++.+.++++++||+.|+..+..++++.+.+++.+ ..| +.+|.
T Consensus 68 ~aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g--~~~--v~~pv 129 (478)
T 1pgj_A 68 KPRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG--LRF--LGMGI 129 (478)
T ss_dssp SSCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTT--CEE--EEEEE
T ss_pred CCCEEEEecCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCC--CeE--EEeec
Confidence 99999999864 235677888999999999999988887777777777776532 222 23343
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC------eEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED------RILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
...+..+. ..+.+++|+. ++..+.++++|+.++... +.+.++.+.+.+.|+++|.+.+..+.+++
T Consensus 130 ~gg~~~a~----~g~~i~~gg~-----~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~ 200 (478)
T 1pgj_A 130 SGGEEGAR----KGPAFFPGGT-----LSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWG 200 (478)
T ss_dssp ESHHHHHH----HCCEEEEEEC-----HHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHh----cCCeEeccCC-----HHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHH
Confidence 22221111 1124677874 778999999999886420 34556788999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhc----CCCC------CCCccc-cCC-CC-ccccchh-----hhH-HHHHHHHHHCCCchh
Q 011650 232 AMSALCEATGADVSQVSHAIG----FDSR------IGPKFL-NAS-VG-FGGSCFQ-----KDI-LNLVYICECNGLPEV 292 (480)
Q Consensus 232 E~~~l~~~~gid~~~v~~~~~----~~~~------i~~~~~-~pg-~g-~gG~c~~-----kD~-~~l~~~a~~~g~~~~ 292 (480)
|+..+++++|++.+++.+++. .... +....+ .-. .| +-...+. ||+ ..+...|+++|++
T Consensus 201 Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~-- 278 (478)
T 1pgj_A 201 EVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP-- 278 (478)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCC--
Confidence 999999999999999988875 2211 000111 111 12 2222222 444 6889999999999
Q ss_pred hhHHHHH
Q 011650 293 ANYWKQV 299 (480)
Q Consensus 293 ~~~~~~~ 299 (480)
.++++++
T Consensus 279 ~Pi~~~a 285 (478)
T 1pgj_A 279 APSLNMA 285 (478)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 7777763
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=187.63 Aligned_cols=275 Identities=14% Similarity=0.104 Sum_probs=190.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec--CHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST--DVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~ 77 (480)
|||+|||+|.||.++|..|+++ ||+|++||+ ++++++.+++....... +.. . .++.+++ +++++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~-g~~------~-~~~~~~~~~~~~~~~~ 70 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRL-GVK------L-NGVEIFWPEQLEKCLE 70 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTT-TBC------C-CSEEEECGGGHHHHHT
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHhCcCccc-Ccc------c-cceEEecHHhHHHHHh
Confidence 7999999999999999999998 999999999 99999999875421111 110 0 2456777 8877789
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CC---CcccHHHHHHHHHhhcCC-CceEE
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TV---PVKTAEAIEKILMHNSRG-INFQI 152 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv---~~gt~~~l~~~l~~~~~g-~~~~v 152 (480)
++|+||+|||++ .+.++++.+.+ ++++++|+..+ ++ ++++.+.+.+.+.+..++ ..+.+
T Consensus 71 ~~D~vi~~v~~~---------------~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~ 134 (335)
T 1txg_A 71 NAEVVLLGVSTD---------------GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVA 134 (335)
T ss_dssp TCSEEEECSCGG---------------GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEE
T ss_pred cCCEEEEcCChH---------------HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEE
Confidence 999999999853 24677888988 88899888776 66 778877887777653111 23455
Q ss_pred eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHH-----------------
Q 011650 153 LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVS----------------- 215 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~----------------- 215 (480)
..+|.....+.. ..+..+++|+. +++..+.++++|+..+. ..+...|+..++|.
T Consensus 135 ~~~p~~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~ 205 (335)
T 1txg_A 135 ITGPAIAREVAK----RMPTTVVFSSP----SESSANKMKEIFETEYF-GVEVTTDIIGTEITSALKNVYSIAIAWIRGY 205 (335)
T ss_dssp EESSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHc----cCCcEEEEEeC----CHHHHHHHHHHhCCCcE-EEEecCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667765443211 12234667765 47788999999997652 34566888888887
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH------HHhcCCCCCCCcc-c--cCCCCcccc----------
Q 011650 216 KLA-----ANAFLAQRISSVNAMSALCEATGADVSQVS------HAIGFDSRIGPKF-L--NASVGFGGS---------- 271 (480)
Q Consensus 216 Kl~-----~N~~~~~~ia~~nE~~~l~~~~gid~~~v~------~~~~~~~~i~~~~-~--~pg~g~gG~---------- 271 (480)
|+. +|.++++.++.++|+..++++.|+|+.++. +.+.+... +.+. + ..++|+...
T Consensus 206 ~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~d~~~~~~~~ 284 (335)
T 1txg_A 206 ESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGMLGELLGKGLSIDEAMEELERRG 284 (335)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccHHHHHHHhCCCCHHHHHHHhccCC
Confidence 555 677778899999999999999999987654 33332210 0011 0 112233211
Q ss_pred -ch---hhhHHHHHHHHHHCCCchhhhHHHHHHHHhhH--hHHHHHHHH
Q 011650 272 -CF---QKDILNLVYICECNGLPEVANYWKQVIKVNDY--QKTRFVNRV 314 (480)
Q Consensus 272 -c~---~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~ 314 (480)
+. .||..++.+++++.|++ .++.+.+.++... .|+..++.+
T Consensus 285 ~~~~E~~~~~~~~~~~a~~~gv~--~P~~~~~~~~~~~~~~~~~~~~~l 331 (335)
T 1txg_A 285 VGVVEGYKTAEKAYRLSSKINAD--TKLLDSIYRVLYEGLKVEEVLFEL 331 (335)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ceecchHHHHHHHHHHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHH
Confidence 33 39999999999999998 7788877665543 344444443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=197.65 Aligned_cols=249 Identities=12% Similarity=0.104 Sum_probs=180.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh---c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR---E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~---~ 78 (480)
|||+|||+|.||.++|..|+++ ||+|++||+++++++.++++..+ + .++..+++++++++ +
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----g----------~gi~~~~~~~e~v~~l~~ 66 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK----G----------TKVLGAHSLEEMVSKLKK 66 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT----T----------SSCEECSSHHHHHHHBCS
T ss_pred CeEEEEChHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcccc----C----------CCeEEeCCHHHHHhhccC
Confidence 7999999999999999999998 99999999999999998863211 1 13667889988764 8
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..+.++++++.+.++++++||+.|+..+..++++.+.+++.+ ..| +.+|..
T Consensus 67 aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g--~~~--v~~pv~ 128 (482)
T 2pgd_A 67 PRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG--ILF--VGSGVS 128 (482)
T ss_dssp SCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CEE--EEEEEE
T ss_pred CCEEEEeCCCh--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeE--eCCCCC
Confidence 99999999864 235777888999999999999988888777777777776543 222 344543
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCe-------EEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDR-------ILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
..+..+ ..++.+++|+. ++..+.++++|+.++. .. .+.+..+.+.+.|++.|.+.+..+.+++
T Consensus 129 g~~~~a----~~g~~i~~gg~-----~e~~~~v~~ll~~~g~-~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~ 198 (482)
T 2pgd_A 129 GGEDGA----RYGPSLMPGGN-----KEAWPHIKAIFQGIAA-KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLIC 198 (482)
T ss_dssp SHHHHH----HHCCEEEEEEC-----TTTHHHHHHHHHHHSC-BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhh----ccCCeEEeCCC-----HHHHHHHHHHHHHhhh-hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 322211 12225677874 5678889999998763 22 3445678899999999999999999999
Q ss_pred HHHHHHHHc-CCCHHHHHHHhc---CCCCCCCc-------ccc---CCCCccccch------hhhHHHHHHHHHHCCCch
Q 011650 232 AMSALCEAT-GADVSQVSHAIG---FDSRIGPK-------FLN---ASVGFGGSCF------QKDILNLVYICECNGLPE 291 (480)
Q Consensus 232 E~~~l~~~~-gid~~~v~~~~~---~~~~i~~~-------~~~---pg~g~gG~c~------~kD~~~l~~~a~~~g~~~ 291 (480)
|+..++++. |++.+++.+++. ... .++. .+. +.+++-..-+ .+|...+...|+++|++
T Consensus 199 Ea~~l~~~~~G~~~~~~~~~~~~w~~g~-~~S~l~~~~~~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~- 276 (482)
T 2pgd_A 199 EAYHLMKDVLGLGHKEMAKAFEEWNKTE-LDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVP- 276 (482)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHhcCCC-cCchHHHHHhHHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCC-
Confidence 999999999 999999998884 221 1111 011 1122211111 34556788999999998
Q ss_pred hhhHHH
Q 011650 292 VANYWK 297 (480)
Q Consensus 292 ~~~~~~ 297 (480)
.+++.
T Consensus 277 -~P~i~ 281 (482)
T 2pgd_A 277 -VTLIG 281 (482)
T ss_dssp -CHHHH
T ss_pred -cchHH
Confidence 66664
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=194.93 Aligned_cols=268 Identities=14% Similarity=0.143 Sum_probs=186.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcC-CCCCCCCChHHHHHHhcCCCEE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVP-----RINAWNSD-QLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
||||+|||+|.||.++|..|+++ | ++|++||++++ +++.+++. ....+.++.. ...++.
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~--G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~i~ 92 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN--AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVP------LPHNIV 92 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH--HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCB------CCTTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHc--CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCccc------CcCCeE
Confidence 57999999999999999999998 8 99999999998 88888763 2333333321 123578
Q ss_pred EecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHh----hCCCCcEEEEec-CCCc--ccHHHHHHH
Q 011650 68 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAD----VSKSDKIVVEKS-TVPV--KTAEAIEKI 140 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~----~l~~~~iVi~~S-Tv~~--gt~~~l~~~ 140 (480)
+++|+++++++||+||+|||+ ..+.++++++.+ .++++++|+..+ ++.+ ++.+.+.+.
T Consensus 93 ~~~~~~ea~~~aDvVilav~~---------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~ 157 (375)
T 1yj8_A 93 AHSDLASVINDADLLIFIVPC---------------QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNY 157 (375)
T ss_dssp EESSTHHHHTTCSEEEECCCH---------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHH
T ss_pred EECCHHHHHcCCCEEEEcCCH---------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHH
Confidence 889998888999999999984 246788889988 888899888776 4555 344455555
Q ss_pred HHhhcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHH-
Q 011650 141 LMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAA- 219 (480)
Q Consensus 141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~- 219 (480)
+++.. +.++.+..+|.+..+... ..+..+++++. +++..+.++++|+..+. ..+...|+..++|.|++.
T Consensus 158 l~~~~-~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~l~N 227 (375)
T 1yj8_A 158 ISDFL-NIPCSALSGANIAMDVAM----ENFSEATIGGN----DKDSLVIWQRVFDLPYF-KINCVNETIEVEICGALKN 227 (375)
T ss_dssp HHHHS-SSCEEEEECSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCSHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEeCCchHHHHHh----CCCeEEEEecC----CHHHHHHHHHHhCCCCe-EEEEeCCcHHHHHHHHHHH
Confidence 55433 234566677876543111 12234555654 46788999999997642 345567888889988765
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHH------hc--CCCC---CCCccccCC--CCc
Q 011650 220 ----------------NAFLAQRISSVNAMSALCEAT--GADVSQVSHA------IG--FDSR---IGPKFLNAS--VGF 268 (480)
Q Consensus 220 ----------------N~~~~~~ia~~nE~~~l~~~~--gid~~~v~~~------~~--~~~~---i~~~~~~pg--~g~ 268 (480)
|.+.++.+.+++|+..++++. |+|+.++.+. +. ...+ ++..+..+| ..+
T Consensus 228 ~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~~~~~~~~g~~~~~ 307 (375)
T 1yj8_A 228 IITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTW 307 (375)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHHHHHHHHhcCCCCCH
Confidence 457788999999999999999 6998766432 11 1111 111111101 111
Q ss_pred c--------ccch--hhhHHHHHHHHHHCCC--chhhhHHHHHHHHh
Q 011650 269 G--------GSCF--QKDILNLVYICECNGL--PEVANYWKQVIKVN 303 (480)
Q Consensus 269 g--------G~c~--~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N 303 (480)
. |.+. .+|..++.+++++.|+ + .|+.+.+.++.
T Consensus 308 ~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~~~--~P~~~~v~~~~ 352 (375)
T 1yj8_A 308 EELENEILKGQKLQGTVTLKYVYHMIKEKNMTNE--FPLFTVLHKIS 352 (375)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCGGG--CHHHHHHHHHH
T ss_pred HHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHH
Confidence 1 4444 8999999999999999 7 77777776654
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=183.62 Aligned_cols=232 Identities=13% Similarity=0.127 Sum_probs=164.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+++ ||+|+++|+ ++++++.+.+. +++ +++++++.+|
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~--g~~V~~~~~~~~~~~~~~~~~~-------------------g~~--~~~~~~~~~a 57 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERARTV-------------------GVT--ETSEEDVYSC 57 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHHHH-------------------TCE--ECCHHHHHTS
T ss_pred CeEEEEechHHHHHHHHHHHHC--CCeEEEeCCccCHHHHHHHHHC-------------------CCc--CCHHHHHhcC
Confidence 7999999999999999999998 999999999 77777766541 133 5667778999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||++.. +. .+.++.+.+++ +|++.||+.+.+.+.+.+.+.+.+ ..+..+...|...
T Consensus 58 Dvvi~~v~~~~~--------------~~-~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~ 119 (264)
T 1i36_A 58 PVVISAVTPGVA--------------LG-AARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG-FVDAAIMGSVRRK 119 (264)
T ss_dssp SEEEECSCGGGH--------------HH-HHHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHH
T ss_pred CEEEEECCCHHH--------------HH-HHHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC-eeeeeeeCCcccc
Confidence 999999986421 12 23567777766 888889998888777776665421 0011222222222
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN-LWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..| .. +++|+. +. +++++ |+.++. ..+...+ ++.+++.|++.|++....+++++|+..+++
T Consensus 120 ~~g--------~~-~~~~g~----~~---~~~~~-l~~~g~-~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~ 181 (264)
T 1i36_A 120 GAD--------IR-IIASGR----DA---EEFMK-LNRYGL-NIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAH 181 (264)
T ss_dssp GGG--------CE-EEEEST----TH---HHHHG-GGGGTC-EEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC--------Ce-EEecCC----cH---HHhhh-HHHcCC-eeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 12 567775 22 67888 988863 2344454 899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHhcCCCCCCCcc-------c--cCCCCccccchhhhHHHHHHHHHHCCCchhhhHHHHHHH
Q 011650 239 ATGADVSQVSHAIGFDSRIGPKF-------L--NASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIK 301 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~~~i~~~~-------~--~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (480)
+.|+|.+ +.+.+.... +..+ + ...+|+. +.||..++.+.+++. ++ .++.+.+.+
T Consensus 182 ~~G~~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~--~p~~~~v~~ 244 (264)
T 1i36_A 182 RLGLEED-VLEMLEYTE--GNDFRESAISRLKSSCIHARR---RYEEMKEVQDMLAEV-ID--PVMPTCIIR 244 (264)
T ss_dssp HTTCHHH-HHHHHHTTS--CSSTHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHTT-SC--CSHHHHHHH
T ss_pred HcCCcHH-HHHHHHHhc--CccHHHHHHHHhcCCCCcchh---hHHHHHHHHHHHHHh-cC--chHHHHHHH
Confidence 9999986 777776542 1111 1 1233333 679999999999999 88 666665544
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=197.48 Aligned_cols=251 Identities=12% Similarity=0.109 Sum_probs=183.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|+|+|||+|.||.+||.+|+++ |++|++||+++++++.+++... + .+++.+++++++++.
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~~r~~~~~~~l~~~~~-----~----------~gi~~~~s~~e~v~~l~~ 78 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR--GYTVSIFNRSREKTEEVIAENP-----G----------KKLVPYYTVKEFVESLET 78 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHST-----T----------SCEEECSSHHHHHHTBCS
T ss_pred CeEEEEccHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhCC-----C----------CCeEEeCCHHHHHhCCCC
Confidence 6899999999999999999998 9999999999999998875210 0 147788899888777
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++. .++++++++.+.++++++||+.|+..+..++++.+.+++.+ ..| +.+|..
T Consensus 79 aDvVil~Vp~~~--------------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g--~~~--v~~pv~ 140 (480)
T 2zyd_A 79 PRRILLMVKAGA--------------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEG--FNF--IGTGVS 140 (480)
T ss_dssp SCEEEECSCSSS--------------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT--CEE--EEEEEE
T ss_pred CCEEEEECCCHH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCC--CCe--eCCccc
Confidence 999999998642 35778889999999999999999998888777777776643 222 244543
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC-------eEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED-------RILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
..|..+.. .+ .+++|+. ++..+.++++|+.++. . +.+.+..+.+.+.|++.|.+.+..+..++
T Consensus 141 gg~~~a~~---g~-~i~~gg~-----~~~~~~v~~ll~~~g~-~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~la 210 (480)
T 2zyd_A 141 GGEEGALK---GP-SIMPGGQ-----KEAYELVAPILTKIAA-VAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIA 210 (480)
T ss_dssp SHHHHHHH---CC-EEEEESC-----HHHHHHHHHHHHHHSC-BCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHhHHhc---CC-eEEecCC-----HHHHHHHHHHHHHHhc-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33322211 12 4778874 7889999999998864 2 34566789999999999999999999999
Q ss_pred HHHHHHHH-cCCCHHHHHHHhc---CC---CCC----CCccc--cCCCCccccchh-----hhHH-HHHHHHHHCCCchh
Q 011650 232 AMSALCEA-TGADVSQVSHAIG---FD---SRI----GPKFL--NASVGFGGSCFQ-----KDIL-NLVYICECNGLPEV 292 (480)
Q Consensus 232 E~~~l~~~-~gid~~~v~~~~~---~~---~~i----~~~~~--~pg~g~gG~c~~-----kD~~-~l~~~a~~~g~~~~ 292 (480)
|+..++++ +|+|++++.+++. .. ..+ +..+. +++.|+...-+. ||.. .....|++.|++
T Consensus 211 Ea~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~-- 288 (480)
T 2zyd_A 211 EAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP-- 288 (480)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCC--
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCC--
Confidence 99999999 7999999998872 12 110 00000 122223222222 3333 667889999998
Q ss_pred hhHHHHH
Q 011650 293 ANYWKQV 299 (480)
Q Consensus 293 ~~~~~~~ 299 (480)
.++...+
T Consensus 289 ~Pi~~~a 295 (480)
T 2zyd_A 289 LSLITES 295 (480)
T ss_dssp CHHHHHH
T ss_pred CchHHHH
Confidence 6666553
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=195.89 Aligned_cols=279 Identities=18% Similarity=0.169 Sum_probs=189.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||+|||+|.||.++|..|+++ ||+|++||+++++++.+++.. ...+.++.. ...++++++++++++.++|+
T Consensus 17 kI~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~aDv 88 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGAEI 88 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTCSS
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccccccc------cccceeeeCCHHHHHcCCCE
Confidence 999999999999999999988 999999999999999887632 222222210 11357888899888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHH----HHhhCCC-CcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARM----IADVSKS-DKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----i~~~l~~-~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
||+|||+ ..+.+++++ +.+.+++ +++|+..+ ++.+++.+.+.+.+.+..++..+.+..+
T Consensus 89 Vilav~~---------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~g 153 (366)
T 1evy_A 89 ILFVIPT---------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAG 153 (366)
T ss_dssp EEECCCH---------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEES
T ss_pred EEECCCh---------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeC
Confidence 9999984 235777887 8888887 88887777 6777766556666655322123556677
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhcc--CCCCeEEeCCchhHHHHHHHH--------------
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHW--VPEDRILCTNLWSAEVSKLAA-------------- 219 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~--~~~~~v~~~~~~~ae~~Kl~~-------------- 219 (480)
|.+..+... ..+..+++++. +++..+.++++|+.. +- ..+...++...+|.|++.
T Consensus 154 p~~~~~~~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~g~-~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~ 224 (366)
T 1evy_A 154 PSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTGDRSF-VCWATTDTVGCEVASAVKNVLAIGSGVANGLG 224 (366)
T ss_dssp SCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCTTSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHh----CCceEEEEecC----CHHHHHHHHHHhcCCCCeE-EEEEcCCchHHHHHHHHHhHHHHHHHHHhhcc
Confidence 776542111 12223455654 467889999999986 42 344567888888887754
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc--------CCC--C---CCCccccCCCCcc------ccc--hhh
Q 011650 220 ---NAFLAQRISSVNAMSALCEATGADVSQVSHAIG--------FDS--R---IGPKFLNASVGFG------GSC--FQK 275 (480)
Q Consensus 220 ---N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~--------~~~--~---i~~~~~~pg~g~g------G~c--~~k 275 (480)
|.+.++.+..++|+..+|++.|+|+.++.+..+ ..+ + ++..+.. |..+. +.+ ..|
T Consensus 225 ~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~e~~~ 303 (366)
T 1evy_A 225 MGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGK-GLPIEEIQRTSKAVAEGVA 303 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHT-TCCHHHHHC---CCCHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhC-CCCHHHHHHHcCCeeehHH
Confidence 556788899999999999999999865543211 011 0 0000101 11111 223 359
Q ss_pred hHHHHHHHHHHCCCchhhhHHHHHHHHhh--HhHHHHHHHHHH
Q 011650 276 DILNLVYICECNGLPEVANYWKQVIKVND--YQKTRFVNRVVS 316 (480)
Q Consensus 276 D~~~l~~~a~~~g~~~~~~~~~~~~~~N~--~~~~~~~~~~~~ 316 (480)
|..++.++++++|++ .++.+.+.++.. ..|...++.+++
T Consensus 304 ~~~~v~~~a~~~gv~--~P~~~~v~~~~~~~~~~~~~~~~l~~ 344 (366)
T 1evy_A 304 TADPLMRLAKQLKVK--MPLCHQIYEIVYKKKNPRDALADLLS 344 (366)
T ss_dssp HHHHHHHHHHHHTCC--CHHHHHHHHHHHSCCCHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 999999999999998 788887776544 356666665543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-20 Score=192.03 Aligned_cols=249 Identities=12% Similarity=0.155 Sum_probs=181.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE--- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (480)
|||+|||+|.||.++|..|+++ |++|++||+++++++.+.+... ..++..+++++++++.
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~---------------~~gi~~~~s~~e~v~~l~~ 68 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR--GYTVAIYNRTTSKTEEVFKEHQ---------------DKNLVFTKTLEEFVGSLEK 68 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTT---------------TSCEEECSSHHHHHHTBCS
T ss_pred CcEEEEeeHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHhCc---------------CCCeEEeCCHHHHHhhccC
Confidence 6899999999999999999998 9999999999999988875210 0147778899887776
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||+|||++ ..+.++++++.+.++++++||+.|+..+..++++.+.+++. |..| +.+|..
T Consensus 69 aDvVilavp~~--------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~--g~~~--v~~pv~ 130 (474)
T 2iz1_A 69 PRRIMLMVQAG--------------AATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADS--GINF--IGTGVS 130 (474)
T ss_dssp SCEEEECCCTT--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTS--SCEE--EEEEEC
T ss_pred CCEEEEEccCc--------------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHC--CCeE--ECCCCC
Confidence 99999999864 23567788899999999999998888777777766665543 2222 344543
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCC-------eEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPED-------RILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
..+..+.. .+ .++.|+. ++..+.++++|+.++... ..+.++.+.+.+.|+++|.+.+..+..++
T Consensus 131 gg~~~a~~---g~-~i~~gg~-----~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~la 201 (474)
T 2iz1_A 131 GGEKGALL---GP-SMMPGGQ-----KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIA 201 (474)
T ss_dssp SHHHHHHH---CC-CEEEEEC-----HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhcc---CC-eEEecCC-----HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHH
Confidence 32222211 12 3667774 788999999999886420 24556789999999999999999999999
Q ss_pred HHHHHHHH-cCCCHHHHHHHhc---CCCCCCC-------c-cc--cCCCCccccchh--------hhHH-HHHHHHHHCC
Q 011650 232 AMSALCEA-TGADVSQVSHAIG---FDSRIGP-------K-FL--NASVGFGGSCFQ--------KDIL-NLVYICECNG 288 (480)
Q Consensus 232 E~~~l~~~-~gid~~~v~~~~~---~~~~i~~-------~-~~--~pg~g~gG~c~~--------kD~~-~l~~~a~~~g 288 (480)
|+..++++ +|++.+++.+++. ... .++ . +. ++.+| ...+. ||.. .....|+++|
T Consensus 202 Ea~~l~~~~~Gl~~~~~~~l~~~w~~g~-~~s~l~~~~~~~l~~~d~~~g--~~~vd~i~D~~~~k~tG~~~~~~A~~~g 278 (474)
T 2iz1_A 202 ESYDLLKRILGLSNAEIQAIFEEWNEGE-LDSYLIEITKEVLKRKDDEGE--GYIVDKILDKAGNKGTGKWTSESALDLG 278 (474)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHTTCBCSSSS--SBGGGGBCSCCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCC-ccccHHHhhhhHhhcCCCCCC--hhHHHHHHHhhcccchHHHHHHHHHHcC
Confidence 99999999 8999999988873 221 110 1 11 22222 13333 6665 5678899999
Q ss_pred CchhhhHHHHH
Q 011650 289 LPEVANYWKQV 299 (480)
Q Consensus 289 ~~~~~~~~~~~ 299 (480)
++ .+++..+
T Consensus 279 v~--~P~~~~a 287 (474)
T 2iz1_A 279 VP--LPLITES 287 (474)
T ss_dssp CC--CHHHHHH
T ss_pred CC--CchHHHH
Confidence 98 6666553
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=188.27 Aligned_cols=267 Identities=16% Similarity=0.158 Sum_probs=182.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcCC-CCCCCCChHHHHHHhcCCCEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVP-----RINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
|||+|||+|.||.++|..|+++ | ++|++||++++ +.+.+++.+ ...+.++.. ...++++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~--g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~ 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN--AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHK------LPPNVVA 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCC------CCTTEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCccc------CccCeEE
Confidence 7999999999999999999998 8 99999999998 888887532 222222210 0135788
Q ss_pred ecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CC--cccHHHHHHHHHhhc
Q 011650 69 STDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VP--VKTAEAIEKILMHNS 145 (480)
Q Consensus 69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~--~gt~~~l~~~l~~~~ 145 (480)
++|+++++++||+||+|||+. .+.++++++.++++++++|+..++ +. +++.+.+.+.+++..
T Consensus 81 ~~~~~~~~~~aD~Vilav~~~---------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~ 145 (354)
T 1x0v_A 81 VPDVVQAAEDADILIFVVPHQ---------------FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERL 145 (354)
T ss_dssp ESSHHHHHTTCSEEEECCCGG---------------GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHH
T ss_pred EcCHHHHHcCCCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHc
Confidence 889988889999999999842 257788899999999998887765 44 454445555554432
Q ss_pred CCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHH-------
Q 011650 146 RGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA------- 218 (480)
Q Consensus 146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~------- 218 (480)
+.++.+..+|.+..+... ..+..+++++. +++..+.++++|+..+. ..+...|+..++|.|++
T Consensus 146 -~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~ 215 (354)
T 1x0v_A 146 -GIPMSVLMGANIASEVAD----EKFCETTIGCK----DPAQGQLLKELMQTPNF-RITVVQEVDTVEICGALKNVVAVG 215 (354)
T ss_dssp -TCCEEEEECSCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCcHHHHHh----cCCceEEEEEC----CHHHHHHHHHHhCCCCE-EEEEcCCchHhHHHHHHHHHHHHH
Confidence 134566677776542110 12234556654 47788999999998642 34556788889999887
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHH------hcC--CCC---CCCccccCCCCcc-----
Q 011650 219 ----------ANAFLAQRISSVNAMSALCEATGA---DVSQVSHA------IGF--DSR---IGPKFLNASVGFG----- 269 (480)
Q Consensus 219 ----------~N~~~~~~ia~~nE~~~l~~~~gi---d~~~v~~~------~~~--~~~---i~~~~~~pg~g~g----- 269 (480)
.|.+.++....++|+..++++.|+ +++++.+. +.+ ..+ ++..+..+|..+.
T Consensus 216 ~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (354)
T 1x0v_A 216 AGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKE 295 (354)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccHHHHHHHHhcCCCHHHHHHh
Confidence 566778899999999999999999 87665321 110 011 1111111111111
Q ss_pred ---ccc--hhhhHHHHHHHHHHCCC--chhhhHHHHHHHHh
Q 011650 270 ---GSC--FQKDILNLVYICECNGL--PEVANYWKQVIKVN 303 (480)
Q Consensus 270 ---G~c--~~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N 303 (480)
|.+ ..+|..++.++++++|+ + .|+.+.+.++.
T Consensus 296 ~~~g~~~E~~~~~g~v~~~a~~~gv~~~--~P~~~~v~~~~ 334 (354)
T 1x0v_A 296 LLNGQKLQGPETARELYSILQHKGLVDK--FPLFMAVYKVC 334 (354)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHTCGGG--SHHHHHHHHHH
T ss_pred hcCCcEeehHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHH
Confidence 333 36899999999999999 7 77777665543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=178.70 Aligned_cols=267 Identities=13% Similarity=0.065 Sum_probs=171.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh---h
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV---R 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~ 77 (480)
||||+|||+|.||.++|..|+++ ||+|++||+++++++.+++........+- . ...++.++++ .+.. +
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~-----~~~~~~~~~~-~~~~~~~~ 73 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKNGLIADFNGE-E-----VVANLPIFSP-EEIDHQNE 73 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHCEEEEETTE-E-----EEECCCEECG-GGCCTTSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhCCEEEEeCCC-e-----eEecceeecc-hhhcccCC
Confidence 68999999999999999999998 99999999999999988763221110000 0 0012233332 3323 3
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
++|+||+|||++ .+.++++++.+.++++++|+..++ ..+..+.+.+.+.+... ..-....+.+
T Consensus 74 ~~d~vi~~v~~~---------------~~~~v~~~l~~~l~~~~~iv~~~~-g~~~~~~l~~~~~~~~v-i~g~~~~~~~ 136 (316)
T 2ew2_A 74 QVDLIIALTKAQ---------------QLDAMFKAIQPMITEKTYVLCLLN-GLGHEDVLEKYVPKENI-LVGITMWTAG 136 (316)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHGGGCCTTCEEEECCS-SSCTHHHHTTTSCGGGE-EEEEECCCCE
T ss_pred CCCEEEEEeccc---------------cHHHHHHHHHHhcCCCCEEEEecC-CCCcHHHHHHHcCCccE-EEEEeeeeeE
Confidence 899999999842 357788899999999998887664 33444555544433210 0001112334
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH---------------
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF--------------- 222 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~--------------- 222 (480)
+..|+...... . ..+.++.. ...+++..+.+.++|+..+. ..+...++..++|.|++.|+.
T Consensus 137 ~~~p~~~~~~~-~-g~~~i~~~-~~~~~~~~~~~~~ll~~~g~-~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~ 212 (316)
T 2ew2_A 137 LEGPGRVKLLG-D-GEIELENI-DPSGKKFALEVVDVFQKAGL-NPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEF 212 (316)
T ss_dssp EEETTEEEECS-C-CCEEEEES-SGGGHHHHHHHHHHHHHTTC-CEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHH
T ss_pred EcCCCEEEEec-C-CcEEEeec-CCCccHHHHHHHHHHHhCCC-CcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHH
Confidence 45555443322 1 22334432 11247788999999998763 355667899999999999963
Q ss_pred ------HHHHHHHHHHHHHHHHHcCCCH--HHHHHHhcC--C----CCCCC-ccccC-CCCccccchhhhHHHHHHHHHH
Q 011650 223 ------LAQRISSVNAMSALCEATGADV--SQVSHAIGF--D----SRIGP-KFLNA-SVGFGGSCFQKDILNLVYICEC 286 (480)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~gid~--~~v~~~~~~--~----~~i~~-~~~~p-g~g~gG~c~~kD~~~l~~~a~~ 286 (480)
+.+..+.++|+..+++++|+++ ..+.+.+.. . ++..+ ...+. ..|+-.. +.+|..++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~~E-~~~~~~~~~~~a~~ 291 (316)
T 2ew2_A 213 GALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRLTE-IDYINGAVWRKGQK 291 (316)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCCCS-GGGTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCCCcHHHHHHHHcCCcch-HHHHhhHHHHHHHH
Confidence 3677889999999999999986 345454432 1 11111 11112 3344444 78999999999999
Q ss_pred CCCchhhhHHHHHH
Q 011650 287 NGLPEVANYWKQVI 300 (480)
Q Consensus 287 ~g~~~~~~~~~~~~ 300 (480)
.|++ .++.+.+.
T Consensus 292 ~gv~--~P~~~~~~ 303 (316)
T 2ew2_A 292 YNVA--TPFCAMLT 303 (316)
T ss_dssp HTCC--CHHHHHHH
T ss_pred hCCC--CCHHHHHH
Confidence 9998 66555443
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=182.97 Aligned_cols=257 Identities=16% Similarity=0.191 Sum_probs=174.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ ||+|++||+++++++.+++.+...++++.. .++++++++++ +.++|+
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~--G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~~~~-~~~aDv 83 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN--GEEVILWARRKEIVDLINVSHTSPYVEESK--------ITVRATNDLEE-IKKEDI 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHSCBTTBTTCC--------CCSEEESCGGG-CCTTEE
T ss_pred CcEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCcccCCCCe--------eeEEEeCCHHH-hcCCCE
Confidence 7999999999999999999998 999999999999999998643211333321 14677888888 889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
||+|||++ .+.++++++.+ ++++||..+ ++.+.+.+.+.+.+.+..+ .++.+..+|.+..
T Consensus 84 Vil~vk~~---------------~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~ 144 (335)
T 1z82_A 84 LVIAIPVQ---------------YIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAE 144 (335)
T ss_dssp EEECSCGG---------------GHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHH
T ss_pred EEEECCHH---------------HHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHH
Confidence 99999842 24566655544 678888777 5677666666666655432 3455667776654
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH-----------------HH
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA-----------------FL 223 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----------------~~ 223 (480)
+... ..+..+++|+. + .+.++++|+..+. ..+...|+...+|.|++.|. ++
T Consensus 145 ~~~~----g~~~~~~~g~~-----~--~~~~~~ll~~~g~-~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~ 212 (335)
T 1z82_A 145 EVAK----KLPTAVTLAGE-----N--SKELQKRISTEYF-RVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKA 212 (335)
T ss_dssp HHHT----TCCEEEEEEET-----T--HHHHHHHHCCSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhC----CCceEEEEEeh-----h--HHHHHHHhCCCCE-EEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHH
Confidence 3111 12224556653 2 6788999987642 34456788888888776654 44
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcC--------C--CC---CCCccccCCCCcc------ccch--hhhHHHHHH
Q 011650 224 AQRISSVNAMSALCEATGADVSQVSHAIGF--------D--SR---IGPKFLNASVGFG------GSCF--QKDILNLVY 282 (480)
Q Consensus 224 ~~~ia~~nE~~~l~~~~gid~~~v~~~~~~--------~--~~---i~~~~~~pg~g~g------G~c~--~kD~~~l~~ 282 (480)
++...+++|+..++++.|+|++++.+..+. . .+ ++..+.. |..+. |.+. .||..++.+
T Consensus 213 a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~-g~~~~~~~~~~g~~~e~~~~~~~v~~ 291 (335)
T 1z82_A 213 ALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR-GFNPLKLLESSNQVVEGAFTVKAVMK 291 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHH-TCCHHHHHHTCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHhC-CCCHHHHHHhcCCeeeHHHHHHHHHH
Confidence 677899999999999999999877543210 1 10 1111111 11111 3333 599999999
Q ss_pred HHHHCCCchhhhHHHHHHHHh
Q 011650 283 ICECNGLPEVANYWKQVIKVN 303 (480)
Q Consensus 283 ~a~~~g~~~~~~~~~~~~~~N 303 (480)
++++.|++ .++.+.+.++.
T Consensus 292 ~a~~~gv~--~P~~~~v~~~~ 310 (335)
T 1z82_A 292 IAKENKID--MPISEEVYRVV 310 (335)
T ss_dssp HHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHhCCC--CcHHHHHHHHH
Confidence 99999998 77777766544
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=163.41 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=130.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
.|||+|||+|.||.++|..|+++ ||+|++||+++++ .+..... .......++... .+... ++++++++++
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~-~~~~~e~~~~ 90 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPKATLARAEPDA---MGAPPFSQWLPE--HPHVH-LAAFADVAAG 90 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHTCC----------CCHHHHGGG--STTCE-EEEHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhhhh---hcchhhhHHHhh--cCcee-ccCHHHHHhc
Confidence 37999999999999999999998 9999999999987 1110000 000001111111 12233 4567788899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHH-HhhCCCCcEEEEec-----------CCCcccHHHHHHHHHhhcC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ADVSKSDKIVVEKS-----------TVPVKTAEAIEKILMHNSR 146 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~S-----------Tv~~gt~~~l~~~l~~~~~ 146 (480)
||+||+|||++. +.+++.++ .+.+ ++++||+.| |+.|++...+.+.+++..+
T Consensus 91 aDvVilavp~~~---------------~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~ 154 (245)
T 3dtt_A 91 AELVVNATEGAS---------------SIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP 154 (245)
T ss_dssp CSEEEECSCGGG---------------HHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST
T ss_pred CCEEEEccCcHH---------------HHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC
Confidence 999999998532 24556667 6666 789999998 7777776666555555321
Q ss_pred CCc----eEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH
Q 011650 147 GIN----FQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF 222 (480)
Q Consensus 147 g~~----~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~ 222 (480)
+.. +..+.+|....+..+... +..+++++. ++++.+.++++|+.++....++.++++.+..+|+++|.+
T Consensus 155 ~~~vv~~~~~~~a~v~~~~~~a~~g---~~~~~v~g~----d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~ 227 (245)
T 3dtt_A 155 EAKVVKTLNTMNASLMVDPGRAAGG---DHSVFVSGN----DAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVW 227 (245)
T ss_dssp TSEEEECSTTSCHHHHHCGGGTGGG---CCCEEEECS----CHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHH
T ss_pred CCeEEEeecccCHHHhcCccccCCC---CeeEEEECC----CHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHH
Confidence 111 112334544443322111 223667775 488999999999998632246788999999999999999
Q ss_pred HHHHHHH
Q 011650 223 LAQRISS 229 (480)
Q Consensus 223 ~~~~ia~ 229 (480)
..+++++
T Consensus 228 ~~l~~~~ 234 (245)
T 3dtt_A 228 IRLWGAL 234 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8887654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=162.41 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=134.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|.||.+||.+|+ + |++|++||+++++++++.+. +. ++ ..+++++++|+++ +++||+
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~---l~----~~-----~~~~i~~~~~~~~-~~~aDl 76 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQ---IP----EE-----LLSKIEFTTTLEK-VKDCDI 76 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHH---SC----GG-----GGGGEEEESSCTT-GGGCSE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHH---HH----HH-----HhCCeEEeCCHHH-HcCCCE
Confidence 68999999999999999999 8 99999999999998887653 10 00 1146888999886 899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~Pe~ 158 (480)
||.|||... +++ ...+.++.+. ++++++ ++||+++..... .+..... |.+| ++|..
T Consensus 77 Vieavpe~~-----------~vk--~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf---~~Pv~ 135 (293)
T 1zej_A 77 VMEAVFEDL-----------NTK--VEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHW---MNPPH 135 (293)
T ss_dssp EEECCCSCH-----------HHH--HHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEE---CSSTT
T ss_pred EEEcCcCCH-----------HHH--HHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEe---cCccc
Confidence 999998642 322 3455666665 788874 678888764322 1111110 2222 34643
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCE 238 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (480)
..+ +. .++ ++..+ ++++++++.++++.+++ .++++.+. |+++|.+ +++++|...+++
T Consensus 136 ~~~------lv---eiv-~g~~t--~~~~~~~~~~l~~~lGk-~~v~v~d~------fi~Nrll----~~~~~EA~~l~~ 192 (293)
T 1zej_A 136 VMP------LV---EIV-ISRFT--DSKTVAFVEGFLRELGK-EVVVCKGQ------SLVNRFN----AAVLSEASRMIE 192 (293)
T ss_dssp TCC------EE---EEE-ECTTC--CHHHHHHHHHHHHHTTC-EEEEEESS------CHHHHHH----HHHHHHHHHHHH
T ss_pred cCC------EE---EEE-CCCCC--CHHHHHHHHHHHHHcCC-eEEEeccc------ccHHHHH----HHHHHHHHHHHH
Confidence 321 11 244 44323 58999999999999874 45666553 6666643 478999999999
Q ss_pred HcCCCHHHHHHHhcCC
Q 011650 239 ATGADVSQVSHAIGFD 254 (480)
Q Consensus 239 ~~gid~~~v~~~~~~~ 254 (480)
+ |+|++++.+++...
T Consensus 193 ~-Gv~~e~id~~~~~g 207 (293)
T 1zej_A 193 E-GVRAEDVDRVWKHH 207 (293)
T ss_dssp H-TCCHHHHHHHHHTT
T ss_pred h-CCCHHHHHHHHHhc
Confidence 9 88999999999855
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=154.29 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=142.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
||||+|||+|.||..+|..|++. |+ +|++||+++++++.+++... ....++++++++.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~--g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~ 61 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDF 61 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGGGGT
T ss_pred CcEEEEEecCHHHHHHHHHHHhc--CCCcEEEEEeCCHHHHHHHHHCCC-----------------cccccCCHHHHhcC
Confidence 78999999999999999999998 88 99999999999887764210 0134567777788
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|||.. .+.++++++.+.++++++|++.+++.+.+.+.+.+.+.+.. ....-.++++
T Consensus 62 ~aDvVilavp~~---------------~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~--v~~~p~~~~~ 124 (281)
T 2g5c_A 62 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHPIAGTE 124 (281)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGE--ECEEEECCCS
T ss_pred CCCEEEEcCCHH---------------HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccc--eeeccccCCc
Confidence 999999999842 24567788888899999999888887666666776665410 0111223445
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC-TNLWSAEVSKLAANAFLAQRISSVNAMSA 235 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (480)
...|+.+..+++....+++... ...+++..+.++++|+.++ ..++. .+....+++|++.|....+.+++++.+..
T Consensus 125 ~~gp~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g--~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~ 200 (281)
T 2g5c_A 125 KSGVEYSLDNLYEGKKVILTPT-KKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIH 200 (281)
T ss_dssp CCSGGGCCSSTTTTCEEEECCC-SSSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCChhhhhhHHhCCCCEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666656554445421 1125788999999999975 34444 44566899999999988878888877765
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=172.06 Aligned_cols=210 Identities=18% Similarity=0.220 Sum_probs=142.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----LPIYEPG-LEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||+|||+|.||.++|..|+++ |++|++||+++++++++.+.. ....+.+ +...-......++++++|++ ++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-AL 82 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence 5899999999999999999998 999999999999988765310 0000011 00000000113688999986 58
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--CCceEEe
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--GINFQIL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g~~~~v~ 153 (480)
++||+||+|||+. +....++++++.+.+++++++ .++||+++.. ++..+..... |.+|
T Consensus 83 ~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~~IlasntSti~i~~---ia~~~~~p~~~ig~hf--- 143 (483)
T 3mog_A 83 AAADLVIEAASER-------------LEVKKALFAQLAEVCPPQTLLTTNTSSISITA---IAAEIKNPERVAGLHF--- 143 (483)
T ss_dssp GGCSEEEECCCCC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTSSSGGGEEEEEE---
T ss_pred cCCCEEEEcCCCc-------------HHHHHHHHHHHHHhhccCcEEEecCCCCCHHH---HHHHccCccceEEeee---
Confidence 9999999999853 122367888999999999988 5678887642 2222211110 1111
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
++|....+ + ..++++..+ ++++.+.+.++++.+++ .++.+.+... ++++|.+ .+++||+
T Consensus 144 ~~Pa~v~~------L----vevv~g~~T--s~e~~~~~~~l~~~lGk-~~v~v~d~~G----fi~Nr~l----~~~~~Ea 202 (483)
T 3mog_A 144 FNPAPVMK------L----VEVVSGLAT--AAEVVEQLCELTLSWGK-QPVRCHSTPG----FIVNRVA----RPYYSEA 202 (483)
T ss_dssp CSSTTTCC------E----EEEEECSSC--CHHHHHHHHHHHHHTTC-EEEEEESCTT----TTHHHHT----HHHHHHH
T ss_pred cChhhhCC------e----EEEecCCCC--CHHHHHHHHHHHHHhCC-EEEEEeccCc----chHHHHH----HHHHHHH
Confidence 34432221 1 234566433 68899999999999874 4566665432 6666644 4489999
Q ss_pred HHHHHHcCCCHHHHHHHhcCC
Q 011650 234 SALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 234 ~~l~~~~gid~~~v~~~~~~~ 254 (480)
..++++.++|++++.+++...
T Consensus 203 ~~l~~~g~~~~~~id~a~~~~ 223 (483)
T 3mog_A 203 WRALEEQVAAPEVIDAALRDG 223 (483)
T ss_dssp HHHHHTTCSCHHHHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHhc
Confidence 999999999999999999754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=158.70 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=136.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH--------------hcCCCE
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ--------------CRGKNL 66 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~--------------~~~~~l 66 (480)
|+||+|||+|.||.++|..|+++ |++|++||+++++++.+++... ..++.+++. ....++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~~~~~~i 88 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIE----ESLRKVAKKKFAENPKAGDEFVEKTLSTI 88 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHH----HHHHHHHHTTSSSCHHHHHHHHHHHHHTE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHH----HHHHHHHHcCCCCccccchhhHHHHHhce
Confidence 57899999999999999999998 9999999999998876532100 000000000 001358
Q ss_pred EEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhc
Q 011650 67 FFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 67 ~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~ 145 (480)
++++|+++++++||+||+|||++. .....+++++.++++++++|+. .|++++. .+.+.+....
T Consensus 89 ~~~~~~~~~~~~aD~Vi~avp~~~-------------~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~---~l~~~~~~~~ 152 (302)
T 1f0y_A 89 ATSTDAASVVHSTDLVVEAIVENL-------------KVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQD 152 (302)
T ss_dssp EEESCHHHHTTSCSEEEECCCSCH-------------HHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGG
T ss_pred EEecCHHHhhcCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCCcc
Confidence 889999878999999999998532 2235677889888998888764 4555543 2322221111
Q ss_pred C--CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH
Q 011650 146 R--GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL 223 (480)
Q Consensus 146 ~--g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~ 223 (480)
. +.+| ++|.+..+. ..++++..+ +++..+.+.++|+.++. .++.+.+.. + ++++|
T Consensus 153 ~~~g~h~---~~P~~~~~~----------~~i~~g~~~--~~e~~~~~~~l~~~~G~-~~v~~~~~~-g---~i~nr--- 209 (302)
T 1f0y_A 153 RFAGLHF---FNPVPVMKL----------VEVIKTPMT--SQKTFESLVDFSKALGK-HPVSCKDTP-G---FIVNR--- 209 (302)
T ss_dssp GEEEEEE---CSSTTTCCE----------EEEECCTTC--CHHHHHHHHHHHHHTTC-EEEEECSCT-T---TTHHH---
T ss_pred cEEEEec---CCCcccCce----------EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCcc-c---ccHHH---
Confidence 0 1111 234332211 123454322 58899999999999863 345554421 1 34444
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 224 AQRISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 224 ~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+.++++||...++++.++|++++..++...
T Consensus 210 -~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g 239 (302)
T 1f0y_A 210 -LLVPYLMEAIRLYERGDASKEDIDTAMKLG 239 (302)
T ss_dssp -HHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 345789999999999999999999988643
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-17 Score=166.58 Aligned_cols=202 Identities=20% Similarity=0.232 Sum_probs=137.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH--------HH-HcCCCCCCCCChHHHHHHhcCCCEEEecC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRIN--------AW-NSDQLPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--------~l-~~g~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
|+||+|||+|.||.+||..|+++ |++|++||+++++.. ++ .+|... +...+.. ..++++++|
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~--~~~~~~~-----~~~i~~t~d 124 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLN--DKRIEKI-----NANLKITSD 124 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCC--HHHHHHH-----HTTEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCC--HHHHHHH-----hcceEEeCC
Confidence 57999999999999999999998 999999999998432 11 222111 0001111 257899999
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
++ ++++||+||+|||+. + .....+++++.+.++++++|+ ++||+++. .++..+..... |.
T Consensus 125 l~-al~~aDlVIeAVpe~-----------~--~vk~~v~~~l~~~~~~~aIlasnTSsl~i~---~ia~~~~~p~r~iG~ 187 (460)
T 3k6j_A 125 FH-KLSNCDLIVESVIED-----------M--KLKKELFANLENICKSTCIFGTNTSSLDLN---EISSVLRDPSNLVGI 187 (460)
T ss_dssp GG-GCTTCSEEEECCCSC-----------H--HHHHHHHHHHHTTSCTTCEEEECCSSSCHH---HHHTTSSSGGGEEEE
T ss_pred HH-HHccCCEEEEcCCCC-----------H--HHHHHHHHHHHhhCCCCCEEEecCCChhHH---HHHHhccCCcceEEE
Confidence 86 589999999999853 2 223677889999999999985 55677753 23222211110 11
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| ++|....+ +. .|+ .+..+ ++++++.+.++++.+++ .++.+.+. .+++.|. +.++
T Consensus 188 Hf---fnPv~~m~------Lv---EIv-~g~~T--s~e~~~~~~~l~~~lGk-~~v~v~d~-----pGfi~Nr---il~~ 243 (460)
T 3k6j_A 188 HF---FNPANVIR------LV---EII-YGSHT--SSQAIATAFQACESIKK-LPVLVGNC-----KSFVFNR---LLHV 243 (460)
T ss_dssp EC---CSSTTTCC------EE---EEE-CCSSC--CHHHHHHHHHHHHHTTC-EEEEESSC-----CHHHHHH---HHHH
T ss_pred Ee---cchhhhCC------EE---EEE-eCCCC--CHHHHHHHHHHHHHhCC-EEEEEecc-----cHHHHHH---HHHH
Confidence 22 34543221 11 244 44333 68999999999999874 56666653 2345553 3457
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 229 SVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+++|+..++++.|+|+++|.+++.
T Consensus 244 ~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 244 YFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999999999999999986
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-16 Score=153.66 Aligned_cols=194 Identities=15% Similarity=0.174 Sum_probs=136.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH-Hhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK-HVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~ 77 (480)
+|||+|||+|.||.++|..|++. |+ +|++||+++++++.+.+.+. .-..++++++ +++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~G~-----------------~~~~~~~~~~~~~~ 93 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDF 93 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCTTGGGGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHCCC-----------------cchhcCCHHHHhhc
Confidence 37999999999999999999998 88 99999999998887664210 0145678887 799
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+||+||+|||.. .+.++++++.+.++++++|++.+++.+...+.+.+.+.+.- ...+-.++|+
T Consensus 94 ~aDvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~--v~~hPm~G~e 156 (314)
T 3ggo_A 94 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHPIAGTE 156 (314)
T ss_dssp CCSEEEECSCGG---------------GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGE--ECEEECCCCC
T ss_pred cCCEEEEeCCHH---------------HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCE--EecCcccCCc
Confidence 999999999842 24677889999999999999988887666666766654310 0011123444
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCc-hhHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNL-WSAEVSKLAANAFLAQRISSVNAM 233 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (480)
...+..+..+++....+++.. ....+++..+.++++|+.++ ..++.++. +....++++...-..+..++++.+
T Consensus 157 ~sG~~~A~~~Lf~g~~~il~~-~~~~~~~~~~~v~~l~~~~G--~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~~~ 230 (314)
T 3ggo_A 157 KSGVEYSLDNLYEGKKVILTP-TKKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDTL 230 (314)
T ss_dssp CCSGGGCCTTTTTTCEEEECC-CTTSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcCCEEEEEe-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666655555532 12235889999999999986 35555554 456778887776555555665544
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=158.24 Aligned_cols=267 Identities=13% Similarity=0.099 Sum_probs=160.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcC--C-C-CeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKC--P-S-IEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~--~-G-~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+|||+|||+|.||.++|..|+++. + | |+|++||+ +++++.+++ .+..+.++.... ...++.++++.+ .
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~-----~~~~~~~~~~~~-~ 80 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDF-----LARPTCVTDNPA-E 80 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEE-----EECCSEEESCHH-H
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCe-----EEecceEecCcc-c
Confidence 379999999999999999998740 0 5 89999999 888998886 433322110000 001345566765 4
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEee-
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILS- 154 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~- 154 (480)
+..+|+||+|||++. +.++++.+.+.++++++|+..++ ..+..+.+.+.+.+.. .-..+.+
T Consensus 81 ~~~~D~vil~vk~~~---------------~~~v~~~i~~~l~~~~~iv~~~n-G~~~~~~l~~~l~~~~--v~~g~~~~ 142 (317)
T 2qyt_A 81 VGTVDYILFCTKDYD---------------MERGVAEIRPMIGQNTKILPLLN-GADIAERMRTYLPDTV--VWKGCVYI 142 (317)
T ss_dssp HCCEEEEEECCSSSC---------------HHHHHHHHGGGEEEEEEEEECSC-SSSHHHHHTTTSCTTT--BCEEEEEE
T ss_pred cCCCCEEEEecCccc---------------HHHHHHHHHhhcCCCCEEEEccC-CCCcHHHHHHHCCCCc--EEEEEEEE
Confidence 789999999998642 36778889988888888876543 4455455544443211 0011222
Q ss_pred CCcccccCccccccCCCCeEEEEcc-CCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH----------
Q 011650 155 NPEFLAEGTAINDLFKPDRVLIGGR-ETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL---------- 223 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~---------- 223 (480)
...+..||...+.. ....+++|+. +.. +.+.. .+.++|+..+. ..++..++..++|.|++.|+..
T Consensus 143 ~a~~~~pg~~~~~~-~g~~~~ig~~~~~~-~~~~~-~~~~ll~~~g~-~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~ 218 (317)
T 2qyt_A 143 SARKSAPGLITLEA-DRELFYFGSGLPEQ-TDDEV-RLAELLTAAGI-RAYNPTDIDWYIMKKFMMISVTATATAYFDKP 218 (317)
T ss_dssp EEEEEETTEEEEEE-EEEEEEEECCSSSC-CHHHH-HHHHHHHHTTC-CEECCSCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred EEEEcCCCEEEEcC-CCceEEEcCCCCCC-cCHHH-HHHHHHHHCCC-CCEEchHHHHHHHHHHHHHHhhHHHHHHHCCC
Confidence 22233445432211 1112336753 221 24556 88899998753 3455689999999999999853
Q ss_pred ---------HHHHHHHHHHHHHHHHcCCCHH--HHHHHhcC----CCC-CCCccccCCCCccccchhhhHHHHHHHHHHC
Q 011650 224 ---------AQRISSVNAMSALCEATGADVS--QVSHAIGF----DSR-IGPKFLNASVGFGGSCFQKDILNLVYICECN 287 (480)
Q Consensus 224 ---------~~~ia~~nE~~~l~~~~gid~~--~v~~~~~~----~~~-i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~ 287 (480)
.+....++|+..++++.|+++. .+.+.+.. .++ ..++..+...|.-. -+.....++.++|+++
T Consensus 219 ~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~g~~~-E~~~~~g~~~~~a~~~ 297 (317)
T 2qyt_A 219 IGSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGST-EVETLTGYVVREAEAL 297 (317)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC---------------------CTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCCCCChHHHHHHcCCcc-CHHHHhhHHHHHHHHc
Confidence 5677899999999999999863 34443321 111 11111111112110 0112256888999999
Q ss_pred CCchhhhHHHHH
Q 011650 288 GLPEVANYWKQV 299 (480)
Q Consensus 288 g~~~~~~~~~~~ 299 (480)
|++ .|+.+.+
T Consensus 298 gv~--~P~~~~~ 307 (317)
T 2qyt_A 298 RVD--LPMYKRM 307 (317)
T ss_dssp TCC--CHHHHHH
T ss_pred CCC--CCHHHHH
Confidence 998 6655544
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=160.93 Aligned_cols=254 Identities=14% Similarity=0.105 Sum_probs=159.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|+++ |++|++||+++++++.++.... .+. .+ ...+. +++. ++++++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~l~~~~~----~~~-~~-----~~~~~-~~~~-~~~~~~d~ 66 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVET----DGS-IF-----NESLT-ANDP-DFLATSDL 66 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECT----TSC-EE-----EEEEE-ESCH-HHHHTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCccceeeEEEEcC----CCc-ee-----eeeee-ecCc-cccCCCCE
Confidence 7999999999999999999998 9999999999876554432110 000 00 00122 3454 45789999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCc--eEEeeCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGIN--FQILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~--~~v~~~Pe~~ 159 (480)
||+|||++ .+.++++++.+.++++++|+..++ ..++.+.+.+.+.+.-.|.. .....+| .
T Consensus 67 vi~~v~~~---------------~~~~v~~~l~~~l~~~~~vv~~~~-g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~- 128 (291)
T 1ks9_A 67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEELQNIQQPLLMGTTTHAARRDGN-V- 128 (291)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGGGTTCCSCEEEEEECCEEEEETT-E-
T ss_pred EEEEecHH---------------hHHHHHHHHHhhCCCCCEEEEecC-CCCcHHHHHHhcCCeEEEEEeEccEEcCC-E-
Confidence 99999853 147788899999998888877644 44554444333322000000 0012234 2
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHH----------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFL---------------- 223 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~---------------- 223 (480)
. ...... ++.+|.... +++..+.++++|+..+. ..++..++..+.|.|++.|+..
T Consensus 129 ----~-~~~~~g-~~~i~~~~~--~~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~ 199 (291)
T 1ks9_A 129 ----I-IHVANG-ITHIGPARQ--QDGDYSYLADILQTVLP-DVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRH 199 (291)
T ss_dssp ----E-EEEECC-CEEEEESSG--GGTTCTHHHHHHHTTSS-CEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred ----E-EEeccc-ceEEccCCC--CcchHHHHHHHHHhcCC-CCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHh
Confidence 1 111122 244554211 34567788999998763 3456679999999999999877
Q ss_pred --HHHHHHHHHHHHHHHHcCCCH--HHH----HHHhcCCC-CCCCccccCCCCccccchhhhHHHHHHHHHHCCCchhhh
Q 011650 224 --AQRISSVNAMSALCEATGADV--SQV----SHAIGFDS-RIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAN 294 (480)
Q Consensus 224 --~~~ia~~nE~~~l~~~~gid~--~~v----~~~~~~~~-~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~~~~~~ 294 (480)
.+....++|+..++++.|++. .++ .+.+...+ ..++++.+...|... -+..+..++.++++++|++ .|
T Consensus 200 ~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~~d~~~g~~~-e~~~~~g~~~~~a~~~gv~--~P 276 (291)
T 1ks9_A 200 HPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHT-EIDYINGFLLRRARAHGIA--VP 276 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHHHTTCCC-SGGGTHHHHHHHHHHHTCC--CH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHcCCcc-HHHHHHHHHHHHHHHhCCC--CC
Confidence 788899999999999999986 444 33333221 111222111122111 2346788999999999998 66
Q ss_pred HHHHH
Q 011650 295 YWKQV 299 (480)
Q Consensus 295 ~~~~~ 299 (480)
+.+.+
T Consensus 277 ~~~~~ 281 (291)
T 1ks9_A 277 ENTRL 281 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=149.49 Aligned_cols=206 Identities=14% Similarity=0.184 Sum_probs=139.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-----------CCCCCCChHHHHHHhcCCCEEEec
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-----------LPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
+||+|||+|.||.++|..|+.+ |++|++||+++++++++.+.. ..+.....+... .++++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~~ 77 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKAL-----GGIRYSD 77 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHH-----HHCEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----cCeEEeC
Confidence 5899999999999999999998 999999999999888766420 001111111111 2467889
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~--g 147 (480)
++++++++||+||+|||+. ......+++++.+.++++++++. .|++++ ..+.+.+..... |
T Consensus 78 ~~~~~~~~aDlVi~av~~~-------------~~~~~~v~~~l~~~~~~~~il~s~tS~~~~---~~la~~~~~~~~~ig 141 (283)
T 4e12_A 78 DLAQAVKDADLVIEAVPES-------------LDLKRDIYTKLGELAPAKTIFATNSSTLLP---SDLVGYTGRGDKFLA 141 (283)
T ss_dssp CHHHHTTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHHHHHSCGGGEEE
T ss_pred CHHHHhccCCEEEEeccCc-------------HHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcceEE
Confidence 9998889999999999853 22346778889999999998874 455553 334444432211 1
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT-NLWSAEVSKLAANAFLAQR 226 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ 226 (480)
.+| ++|....+. ..++++..+ +++..+.+.++++.++. .++.+. +.. .++.|. +.
T Consensus 142 ~h~---~~p~~~~~l----------vevv~~~~t--~~~~~~~~~~l~~~~g~-~~v~v~~~~~-----g~i~nr---~~ 197 (283)
T 4e12_A 142 LHF---ANHVWVNNT----------AEVMGTTKT--DPEVYQQVVEFASAIGM-VPIELKKEKA-----GYVLNS---LL 197 (283)
T ss_dssp EEE---CSSTTTSCE----------EEEEECTTS--CHHHHHHHHHHHHHTTC-EEEECSSCCT-----TTTHHH---HH
T ss_pred Ecc---CCCcccCce----------EEEEeCCCC--CHHHHHHHHHHHHHcCC-EEEEEecCCC-----CEEehH---HH
Confidence 111 344332221 123455333 68899999999999874 455542 221 123442 34
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011650 227 ISSVNAMSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 227 ia~~nE~~~l~~~~gid~~~v~~~~~~~ 254 (480)
.++++|...++++.++|++++.+++...
T Consensus 198 ~~~~~ea~~l~~~g~~~~~~id~~~~~~ 225 (283)
T 4e12_A 198 VPLLDAAAELLVDGIADPETIDKTWRIG 225 (283)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 5789999999999999999999998754
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=158.67 Aligned_cols=294 Identities=17% Similarity=0.185 Sum_probs=175.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCE-EEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNL-FFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~a 79 (480)
|||+|||+|.||..+|..|+++ |++|++||+++++++.+++. ...+.+.+.+. ..++ .+++++++++.++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG------TAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE------EECCSEEESCHHHHHTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcCCeEEecccccc------ccccceecCCHHHHHhcC
Confidence 6899999999999999999998 99999999999999988753 22221111100 0122 4678888888999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC-CCceE-EeeCCc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQ-ILSNPE 157 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~-v~~~Pe 157 (480)
|+||+|||++. ..++++.+.+.++++++|+...++.+++. ++.+.+.+.+. ...|. +..+|.
T Consensus 77 D~vi~~v~~~~---------------~~~~~~~l~~~l~~~~~vv~~~~~~~~~~-~~~~~l~~~~~~~v~~~~~~~~~~ 140 (359)
T 1bg6_A 77 DVILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGGAL-EFRKILRENGAPEVTIGETSSMLF 140 (359)
T ss_dssp SEEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSHHH-HHHHHHHHTTCCCCEEEEESSCSE
T ss_pred CEEEEeCCchH---------------HHHHHHHHHHhCCCCCEEEEcCCCchHHH-HHHHHHHhcCCCCeEEEEecCCcE
Confidence 99999998642 25778889999999998887644333443 34555555321 11121 123554
Q ss_pred cc---ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHH---------------
Q 011650 158 FL---AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAA--------------- 219 (480)
Q Consensus 158 ~~---~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--------------- 219 (480)
.. .||... .+....++.+|......+++..+.++++|..+. ...++ |.|++.
T Consensus 141 ~~~~~gpg~v~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-----~~~di----~~k~~~nvn~~~n~~~al~~~ 210 (359)
T 1bg6_A 141 TCRSERPGQVT-VNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV-----AVENV----LHTSLTNVNAVMHPLPTLLNA 210 (359)
T ss_dssp EEECSSTTEEE-EEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE-----ECSCH----HHHHHCCHHHHHTHHHHHTTH
T ss_pred EEEeCCCCEEE-EEEeecceEEEeccccccHHHHHHHHHHhhhcE-----EcCCh----HhhhccCCCccccHHHHHhhh
Confidence 32 344332 121133556665322224556677777765431 12332 222221
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCC-----------CCCcccc-CCC-Ccc
Q 011650 220 -----------------NAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSR-----------IGPKFLN-ASV-GFG 269 (480)
Q Consensus 220 -----------------N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~-----------i~~~~~~-pg~-g~g 269 (480)
|..+.+....+.|+..+++++|+++.++.+.+..... ..+++.. .+| .+-
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~~e~~ 290 (359)
T 1bg6_A 211 ARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLN 290 (359)
T ss_dssp HHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSC
T ss_pred chhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCCCCCC
Confidence 2235667788999999999999988666666543210 0111111 112 133
Q ss_pred ccchhhhH----HHHHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHHHhcCCC--CCCEEEEEeeccCCCCCcccC
Q 011650 270 GSCFQKDI----LNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTV--SGKKIAILGFAFKKDTGDTRE 343 (480)
Q Consensus 270 G~c~~kD~----~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~~v~ilGla~K~~~~d~r~ 343 (480)
+.-+.||. .++++.|+++|++ .|+.+.+.+. +.....+.. .++++..+|++ +.+++|+|+
T Consensus 291 ~~~~~~D~~~~~g~~~~~a~~~gv~--~P~~~~l~~~-----------~~~~~~~~~~~~g~~~~~lgl~-~~~~~~~~~ 356 (359)
T 1bg6_A 291 TRYFFEDVSTGLVPLSELGRAVNVP--TPLIDAVLDL-----------ISSLIDTDFRKEGRTLEKLGLS-GLTAAGIRS 356 (359)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHTTCC--CHHHHHHHHH-----------HHHHTTCCHHHHSCCTTTTTCT-TCCHHHHHH
T ss_pred ccceecCcCccHHHHHHHHHHcCCC--chHHHHHHHH-----------HHHHHCCChhhcCCCHHhcCCC-CCCHHHHHH
Confidence 33677887 6889999999998 6655544331 111111111 36678888998 778777653
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-16 Score=155.00 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=146.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHHHhcCCCEEEe
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS------------DQLPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------g~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
.||+|||+|.||..+|..++.+ |++|+++|++++.+++..+ +... .....++.+ .+++.+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~l-----~~i~~~ 78 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLK-GSLSAEEQL-----SLISSC 78 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCC-SSSCHHHHH-----HTEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCC-CccCHHHHH-----hhcccc
Confidence 5899999999999999999998 9999999999987654321 1111 011222222 468899
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~-- 146 (480)
+|+++++++||+||.|||. +.+++ ++++++|.+++++++|+. ++|++++.. ++..+.....
T Consensus 79 ~~l~~a~~~ad~ViEav~E-----------~l~iK--~~lf~~l~~~~~~~aIlaSNTSsl~is~---ia~~~~~p~r~i 142 (319)
T 3ado_A 79 TNLAEAVEGVVHIQECVPE-----------NLDLK--RKIFAQLDSIVDDRVVLSSSSSCLLPSK---LFTGLAHVKQCI 142 (319)
T ss_dssp CCHHHHTTTEEEEEECCCS-----------CHHHH--HHHHHHHHTTCCSSSEEEECCSSCCHHH---HHTTCTTGGGEE
T ss_pred cchHhHhccCcEEeecccc-----------HHHHH--HHHHHHHHHHhhhcceeehhhhhccchh---hhhhccCCCcEE
Confidence 9999999999999999986 34555 889999999999999884 445556543 2221111111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe-CCchhHHHHHHHHHHHHHH
Q 011650 147 GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC-TNLWSAEVSKLAANAFLAQ 225 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~ 225 (480)
|.+| |+|....+- -.|| .+..| ++++.+++.++++.+++ .++.+ .+ ...++.| .+
T Consensus 143 g~Hf---fNP~~~m~L---------VEiv-~g~~T--s~~~~~~~~~~~~~~gk-~pv~v~kd-----~pGFi~N---Rl 198 (319)
T 3ado_A 143 VAHP---VNPPYYIPL---------VELV-PHPET--SPATVDRTHALMRKIGQ-SPVRVLKE-----IDGFVLN---RL 198 (319)
T ss_dssp EEEE---CSSTTTCCE---------EEEE-ECTTC--CHHHHHHHHHHHHHTTC-EEEECSSC-----CTTTTHH---HH
T ss_pred EecC---CCCccccch---------HHhc-CCCCC--cHHHHHHHHHHHHHhCC-ccCCcCCC-----CCCEeHH---HH
Confidence 2222 466554431 1354 55444 78999999999999874 45543 33 3356777 56
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Q 011650 226 RISSVNAMSALCEATGADVSQVSHAIGFDS 255 (480)
Q Consensus 226 ~ia~~nE~~~l~~~~gid~~~v~~~~~~~~ 255 (480)
..++++|+..+.+..+++++++..++....
T Consensus 199 ~~~~~~EA~~lv~eGvas~edID~~~~~g~ 228 (319)
T 3ado_A 199 QYAIISEAWRLVEEGIVSPSDLDLVMSDGL 228 (319)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 799999999999999999999999998664
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=169.73 Aligned_cols=207 Identities=20% Similarity=0.211 Sum_probs=138.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----LPIYEPG-LEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|||+|.||.++|.+|+++ ||+|++||++++.++..++.. ....+.+ +...-.....+++++++|++ +
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~ 388 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-S 388 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-G
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-H
Confidence 57899999999999999999998 999999999999887653210 0000000 00000001235788999984 6
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CCceEE
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GINFQI 152 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (480)
+++||+||+|||++. ...+.+++++.++++++++|+ ++||+++.. +.+.+..... |.+|
T Consensus 389 ~~~aDlVIeaVpe~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~p~~~iG~hf-- 450 (725)
T 2wtb_A 389 FRDVDMVIEAVIENI-------------SLKQQIFADLEKYCPQHCILASNTSTIDLNK---IGERTKSQDRIVGAHF-- 450 (725)
T ss_dssp GTTCSEEEECCCSCH-------------HHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTCSCTTTEEEEEE--
T ss_pred HCCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHHhcCCCCEEEecC--
Confidence 899999999998632 223667788999999999885 456776542 2222211110 2222
Q ss_pred eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011650 153 LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (480)
++|.+..+ + ..|+ .+..+ ++++++.+.++++.+++ .++++.+. .+++.|. +.++++||
T Consensus 451 -~~P~~~~~------l---vevv-~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~Gfi~Nr---il~~~~~E 508 (725)
T 2wtb_A 451 -FSPAHIMP------L---LEIV-RTNHT--SAQVIVDLLDVGKKIKK-TPVVVGNC-----TGFAVNR---MFFPYTQA 508 (725)
T ss_dssp -CSSTTTCC------E---EEEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEEEESS-----TTTTHHH---HHHHHHHH
T ss_pred -CCCcccCc------e---EEEE-ECCCC--CHHHHHHHHHHHHHhCC-EEEEECCC-----ccHHHHH---HHHHHHHH
Confidence 45654322 1 1244 44433 58999999999999874 45666653 4456663 44678999
Q ss_pred HHHHHHHcCCCHHHHHHHh
Q 011650 233 MSALCEATGADVSQVSHAI 251 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~ 251 (480)
+..++++ |+|++++.+++
T Consensus 509 a~~l~~~-G~~~e~id~~~ 526 (725)
T 2wtb_A 509 AMFLVEC-GADPYLIDRAI 526 (725)
T ss_dssp HHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHH
Confidence 9999998 99999999998
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=170.61 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=136.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH---------hcCCCEEEecC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ---------CRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~---------~~~~~l~~t~d 71 (480)
+|||+|||+|+||.++|..|+++ ||+|++||+++++++...+.. +..++.+++. ...+++++++|
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d 387 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEA----AKLLVGRVDKGRMTPAKMAEVLNGIRPTLS 387 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH----HHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred CCEEEEECCChhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHhcCeEEECC
Confidence 57899999999999999999998 999999999999887632100 0001111100 00124788899
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEE-EecCCCcccHHHHHHHHHhhcC--CC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILMHNSR--GI 148 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (480)
+ +++++||+||+|||++. .....+++++.++++++++|+ ++||+++.. +.+.+..... |.
T Consensus 388 ~-~~~~~aDlVIeaV~e~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~~~~~ig~ 450 (715)
T 1wdk_A 388 Y-GDFGNVDLVVEAVVENP-------------KVKQAVLAEVENHVREDAILASNTSTISISL---LAKALKRPENFVGM 450 (715)
T ss_dssp S-TTGGGCSEEEECCCSCH-------------HHHHHHHHHHHTTSCTTCEEEECCSSSCHHH---HGGGCSCGGGEEEE
T ss_pred H-HHHCCCCEEEEcCCCCH-------------HHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH---HHHHhcCccceEEE
Confidence 8 56899999999998632 223567888999999999886 456776542 3222211100 11
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRIS 228 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia 228 (480)
+| ++|....+. ..++ .+..+ ++++++.+.++++.+++ .++++++. .+++.|. +.++
T Consensus 451 hf---~~P~~~~~l---------vevv-~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~Gfi~Nr---il~~ 506 (715)
T 1wdk_A 451 HF---FNPVHMMPL---------VEVI-RGEKS--SDLAVATTVAYAKKMGK-NPIVVNDC-----PGFLVNR---VLFP 506 (715)
T ss_dssp EC---CSSTTTCCE---------EEEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEEEESC-----TTTTHHH---HHHH
T ss_pred Ec---cCCcccCce---------EEEE-ECCCC--CHHHHHHHHHHHHHhCC-EeEEEcCC-----CChhhhH---HHHH
Confidence 22 345433221 1244 44333 58999999999999874 45666653 3456663 3457
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHh
Q 011650 229 SVNAMSALCEATGADVSQVSHAI 251 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~ 251 (480)
++||+..++++ |+|++++.+++
T Consensus 507 ~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 507 YFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHH
Confidence 89999999997 99999999998
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=151.87 Aligned_cols=261 Identities=18% Similarity=0.191 Sum_probs=165.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||..+|..|+++ |++|++||++ ++++.+++.+..+..++.. ...++++++++++ +.++|
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~-~~~~D 72 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARG-ATLQALQTAGLRLTEDGAT------HTLPVRATHDAAA-LGEQD 72 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCH-HHHHHHHHTCEEEEETTEE------EEECCEEESCHHH-HCCCS
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEECh-HHHHHHHHCCCEEecCCCe------EEEeeeEECCHHH-cCCCC
Confidence 48999999999999999999998 9999999996 6778887643322211110 0113466788876 68999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-C-----------------cccHHHHHHHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-P-----------------VKTAEAIEKILM 142 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~-----------------~gt~~~l~~~l~ 142 (480)
+||+|||++ .+.++++.+.+.++++++|+..+.. + .+..+.+.+.+.
T Consensus 73 ~Vilavk~~---------------~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 137 (335)
T 3ghy_A 73 VVIVAVKAP---------------ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP 137 (335)
T ss_dssp EEEECCCHH---------------HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC
T ss_pred EEEEeCCch---------------hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC
Confidence 999999852 3577888898999889888754432 2 233334554443
Q ss_pred hhcCCCceEEeeC-CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH
Q 011650 143 HNSRGINFQILSN-PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA 221 (480)
Q Consensus 143 ~~~~g~~~~v~~~-Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~ 221 (480)
... .-..+++. ..+..||.+.+.. ..++.+|..+.. +.+..+.+.++|+..+- ......|+....|.|++.|+
T Consensus 138 ~~~--v~~gv~~~~a~~~~pg~v~~~~--~g~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~na 211 (335)
T 3ghy_A 138 TRH--VLGCVVHLTCATVSPGHIRHGN--GRRLILGEPAGG-ASPRLASIAALFGRAGL-QAECSEAIQRDIWFKLWGNM 211 (335)
T ss_dssp GGG--EEEEEECCCEEESSTTEEEECS--CCEEEEECTTCS-CCHHHHHHHHHHHHTTC-EEEECSCHHHHHHHHHHTTT
T ss_pred ccc--EEEEEEEEEEEEcCCcEEEECC--CCeEEEecCCCC-cCHHHHHHHHHHHhCCC-CcEeCchHHHHHHHHHHHHh
Confidence 221 00112222 2344566654332 346778864322 24567888889987542 34456799999999987653
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHcCCCH----HHHHHHhcCCCC-CCCccccCCCCcccc-chh
Q 011650 222 ---------------------FLAQRISSVNAMSALCEATGADV----SQVSHAIGFDSR-IGPKFLNASVGFGGS-CFQ 274 (480)
Q Consensus 222 ---------------------~~~~~ia~~nE~~~l~~~~gid~----~~v~~~~~~~~~-i~~~~~~pg~g~gG~-c~~ 274 (480)
.+++....++|+..++++.|+++ +++++.....+. .++++.+-- -|. -.-
T Consensus 212 ~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~~tE 288 (335)
T 3ghy_A 212 TMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAFKTSMLQDAE---AGRGPLE 288 (335)
T ss_dssp THHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSCCCTTTC--------CCCCC
T ss_pred hhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCCCcHHHHHHH---cCCCCch
Confidence 46778899999999999999753 445554433222 122221111 111 112
Q ss_pred hh--HHHHHHHHHHCCCchhhhHHH
Q 011650 275 KD--ILNLVYICECNGLPEVANYWK 297 (480)
Q Consensus 275 kD--~~~l~~~a~~~g~~~~~~~~~ 297 (480)
.| ..++++.|+++|++ .|+.+
T Consensus 289 id~i~G~vv~~a~~~gv~--~P~~~ 311 (335)
T 3ghy_A 289 IDALVASVREIGLHVGVP--TPQID 311 (335)
T ss_dssp HHHHTHHHHHHHHHHTCC--CHHHH
T ss_pred HHHHhhHHHHHHHHhCCC--CCHHH
Confidence 22 34788899999998 55443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=159.28 Aligned_cols=205 Identities=16% Similarity=0.162 Sum_probs=137.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH--h-----cCCCEEEecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ--C-----RGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~--~-----~~~~l~~t~d~~ 73 (480)
||||+|||+|.||.++|..|+++ |++|++||+++++++...+.. +..++..+.. . .....+++++++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 110 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKII----TFTLEKEASRAHQNGQASAKPKLRFSSSTK 110 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHH----HHHHHHHHHHHHHTTCCCCCCCEEEESCGG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhhcCCHH
Confidence 57899999999999999999998 999999999999887765411 0111222211 0 012245688884
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC--CCceE
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR--GINFQ 151 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (480)
++++||+||+|||+. +.....+++++.++++++++|+. ||..+..+ .+++.+..... |.+|
T Consensus 111 -~~~~aDlVIeaVpe~-------------~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf- 173 (463)
T 1zcj_A 111 -ELSTVDLVVEAVFED-------------MNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHF- 173 (463)
T ss_dssp -GGTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEE-
T ss_pred -HHCCCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeec-
Confidence 589999999999852 23346778889999999998875 67666654 44443321111 2222
Q ss_pred EeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 152 ILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 152 v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
++|....+ + ..+ +.+..+ ++++++.+.++++.+++ .++++.+. .+++.|. +...+++
T Consensus 174 --~~P~~~~~------l---vev-v~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~~~-----~gfi~Nr---ll~~~~~ 230 (463)
T 1zcj_A 174 --FSPAHVMR------L---LEV-IPSRYS--SPTTIATVMSLSKKIGK-IGVVVGNC-----YGFVGNR---MLAPYYN 230 (463)
T ss_dssp --CSSTTTCC------E---EEE-EECSSC--CHHHHHHHHHHHHHTTC-EEEEBCCS-----TTTTHHH---HHHHHHH
T ss_pred --CCCcccce------e---EEE-eCCCCC--CHHHHHHHHHHHHHhCC-EEEEECCC-----ccHHHHH---HHHHHHH
Confidence 35654321 1 124 444333 58999999999999864 45666542 2335553 3345779
Q ss_pred HHHHHHHHcCCCHHHHHHHhc
Q 011650 232 AMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 232 E~~~l~~~~gid~~~v~~~~~ 252 (480)
|...++++ |++++++.+++.
T Consensus 231 ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 231 QGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp HHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHH
Confidence 99999988 899999999996
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=145.08 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=134.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||..+|..|++. |++ |.+||+++++.+.+.+. -++..+++++++++++|
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~------------------~g~~~~~~~~~~~~~~D 70 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQK------------------VEAEYTTDLAEVNPYAK 70 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHH------------------TTCEEESCGGGSCSCCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHH------------------cCCceeCCHHHHhcCCC
Confidence 7899999999999999999998 898 99999999998887642 12456778888788999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|+|.+ .+.++++++.+.++++++|+..|+..+... +.+.+.+. ......+|-...
T Consensus 71 vvi~av~~~---------------~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~----~~~~~~~~~~g~ 129 (266)
T 3d1l_A 71 LYIVSLKDS---------------AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHY----GVFYPMQTFSKQ 129 (266)
T ss_dssp EEEECCCHH---------------HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSE----EEEEECCCC---
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhc----cCcCCceecCCC
Confidence 999999842 246778888888889999998887654332 32222211 111233442111
Q ss_pred cCccccccCCCCeEEE-EccCCcchHHHHHHHHHHHhccCCCCeEEeCCch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 161 EGTAINDLFKPDRVLI-GGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW---SAEVSKLAANAFLAQRISSVNAMSAL 236 (480)
Q Consensus 161 ~G~a~~~~~~~~~vvi-G~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~---~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (480)
+. ..+.+.+ +++ |+ +++..+.++++|+.++. .++...+.+ ...++|+++|.. ..+..+.|. +
T Consensus 130 ~~---~~~~~~~-~~v~~~-----~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l 195 (266)
T 3d1l_A 130 RE---VDFKEIP-FFIEAS-----STEDAAFLKAIASTLSN-RVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--L 195 (266)
T ss_dssp CC---CCCTTCC-EEEEES-----SHHHHHHHHHHHHTTCS-CEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
T ss_pred ch---hhcCCCe-EEEecC-----CHHHHHHHHHHHHhcCC-cEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
Confidence 11 1223333 445 44 37889999999999863 344444333 467899998863 233444453 7
Q ss_pred HHHcCCCHHHHHHHhcC
Q 011650 237 CEATGADVSQVSHAIGF 253 (480)
Q Consensus 237 ~~~~gid~~~v~~~~~~ 253 (480)
+++.|+|.+++.+++..
T Consensus 196 ~~~~Gl~~~~~~~l~~~ 212 (266)
T 3d1l_A 196 LKKYNLPFDVMLPLIDE 212 (266)
T ss_dssp HHHTTCCGGGGHHHHHH
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 78999999888777764
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-15 Score=143.46 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=120.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||.++|..|++++.|++|++||+++++++.+.+... ....+++++++++++|
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~aD 68 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-----------------VDEATADFKVFAALAD 68 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-----------------CSEEESCTTTTGGGCS
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-----------------cccccCCHHHhhcCCC
Confidence 47999999999999999999987335899999999999888764210 0135667777788999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC---
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP--- 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P--- 156 (480)
+||+|||.+ .+.++++++.+. ++++++|++.|++.++..+.+.+.+.+. +..| +..+|
T Consensus 69 vVilavp~~---------------~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~--~~~~-v~~~P~~g 130 (290)
T 3b1f_A 69 VIILAVPIK---------------KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDK--PVQF-VGSHPMAG 130 (290)
T ss_dssp EEEECSCHH---------------HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTS--SCEE-EEEEEC--
T ss_pred EEEEcCCHH---------------HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhcccc--CCEE-EEeCCcCC
Confidence 999999852 246778888888 8999999988887777666776666541 1222 33334
Q ss_pred -cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh
Q 011650 157 -EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS 211 (480)
Q Consensus 157 -e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ 211 (480)
+...++.+..+++....+++... ...+++..+.++++|+.++ ..++..+.+.
T Consensus 131 ~~~~g~~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~G--~~~~~~~~~~ 183 (290)
T 3b1f_A 131 SHKSGAVAANVNLFENAYYIFSPS-CLTKPNTIPALQDLLSGLH--ARYVEIDAAE 183 (290)
T ss_dssp ---CCTTSCCTTTTTTSEEEEEEC-TTCCTTHHHHHHHHTGGGC--CEEEECCHHH
T ss_pred CCcchHHHhhHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHH
Confidence 34456655555666655555421 1124678899999999985 3565555544
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=142.30 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=130.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|++. |++|++||+++++++.+++... ...++++++++ .++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~~~-~~~D~ 60 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----------------VDEAGQDLSLL-QTAKI 60 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGG-TTCSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhCCC-----------------CccccCCHHHh-CCCCE
Confidence 7999999999999999999998 8999999999999888765211 01346778876 89999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||.. .+.++++++.+.++++++|++.+++.+...+.+.+.+... ...+-..+++...|
T Consensus 61 vi~av~~~---------------~~~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~---~~~~p~~g~~~~gp 122 (279)
T 2f1k_A 61 IFLCTPIQ---------------LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQGI 122 (279)
T ss_dssp EEECSCHH---------------HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSSG
T ss_pred EEEECCHH---------------HHHHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhCCE---eecCcccCCccCCH
Confidence 99999842 3567888899999999999887777665555444332210 01111223344456
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHH
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVN 231 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (480)
+.+..+++....+++... ...+++..+.++++|+.++. .++...+....+++|++.|.-..+..++++
T Consensus 123 ~~a~~~~~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~p~~i~~al~~ 190 (279)
T 2f1k_A 123 DGAEENLFVNAPYVLTPT-EYTDPEQLACLRSVLEPLGV-KIYLCTPADHDQAVAWISHLPVMVSAALIQ 190 (279)
T ss_dssp GGCCTTTTTTCEEEEEEC-TTCCHHHHHHHHHHHGGGTC-EEEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhHHHhCCCcEEEecC-CCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555545544433434321 11247889999999999852 345556678899999999974444444433
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=152.84 Aligned_cols=217 Identities=14% Similarity=0.127 Sum_probs=154.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--------eEEEEeCCHH-----HHHHHHcC-CCCCCCCChHHHHHHhcCCCEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--------EVAVVDISVP-----RINAWNSD-QLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--------~V~~~D~~~~-----~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
.||+|||.|.||+++|..|+++ || +|++|.++++ .++.+++. .++.|.|+.. ...+++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n--g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~------Lp~~i~ 106 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN--CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGIT------LPDNLV 106 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCC------CCSSEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc--CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCc------CCCCcE
Confidence 3899999999999999999997 64 5999998765 46677764 4555655542 246799
Q ss_pred EecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-Cccc--HHHHHHHHHhh
Q 011650 68 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKT--AEAIEKILMHN 144 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt--~~~l~~~l~~~ 144 (480)
+++|+++++++||+||++||+. .++++++++.++++++.++|..+.. .+++ .+.+.+.+.+.
T Consensus 107 ~t~dl~~al~~ad~ii~avPs~---------------~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~ 171 (391)
T 4fgw_A 107 ANPDLIDSVKDVDIIVFNIPHQ---------------FLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEE 171 (391)
T ss_dssp EESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHH
T ss_pred EeCCHHHHHhcCCEEEEECChh---------------hhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHH
Confidence 9999999999999999999863 3688999999999999988877743 4333 23455556554
Q ss_pred cCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcc-----hHHHHHHHHHHHhccCCCCeEEeCCchhHHHHH---
Q 011650 145 SRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPE-----GMKAIKALKDVYAHWVPEDRILCTNLWSAEVSK--- 216 (480)
Q Consensus 145 ~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~-----~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K--- 216 (480)
. +..+.++++|.+..+-.. ..|..+++++.+... ++...+.++++|..-. ...+...|+...|+..
T Consensus 172 ~-~~~~~vLsGPs~A~EVa~----~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~-frvy~s~DviGvElgGAlK 245 (391)
T 4fgw_A 172 L-GIQCGALSGANIATEVAQ----EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPY-FHVSVIEDVAGISICGALK 245 (391)
T ss_dssp H-CCEEEEEECSCCHHHHHT----TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTT-EEEEEESCHHHHHHHHHHH
T ss_pred h-CccceeccCCchHHHhhc----CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCC-EEEEEeCCccceehHHHHH
Confidence 3 356778899998765322 345667777653210 1223567888887632 1234457887777754
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHH
Q 011650 217 --------------LAANAFLAQRISSVNAMSALCEAT---GADVSQV 247 (480)
Q Consensus 217 --------------l~~N~~~~~~ia~~nE~~~l~~~~---gid~~~v 247 (480)
+-.|+..++....++||.+|+..+ |.+...+
T Consensus 246 NViAIAaGi~dGlg~G~NakAALitrGl~Em~rlg~al~~~g~~~tt~ 293 (391)
T 4fgw_A 246 NVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYY 293 (391)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceee
Confidence 345777788888999999999998 4444433
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=138.01 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=127.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
||||+|||+|.||.++|..|+++ |+ +|++||+++++++.+.+. .+++.++++++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~--g~~~~~~V~~~~r~~~~~~~~~~~------------------~g~~~~~~~~e~~ 61 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK--NIVSSNQIICSDLNTANLKNASEK------------------YGLTTTTDNNEVA 61 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TSSCGGGEEEECSCHHHHHHHHHH------------------HCCEECSCHHHHH
T ss_pred CCeEEEECccHHHHHHHHHHHhC--CCCCCCeEEEEeCCHHHHHHHHHH------------------hCCEEeCChHHHH
Confidence 47999999999999999999998 88 999999999999887641 1356678888889
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE-ecCCCcccHHHHHHHHHhhcCCCceE--Ee
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILMHNSRGINFQ--IL 153 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~~~--v~ 153 (480)
++||+||+|||. . .+.++++++.++++++++|+. .++++ .+.+++.+... ..+. ..
T Consensus 62 ~~aDvVilav~~-~--------------~~~~v~~~l~~~l~~~~~vvs~~~gi~---~~~l~~~~~~~---~~~v~~~p 120 (247)
T 3gt0_A 62 KNADILILSIKP-D--------------LYASIINEIKEIIKNDAIIVTIAAGKS---IESTENAFNKK---VKVVRVMP 120 (247)
T ss_dssp HHCSEEEECSCT-T--------------THHHHC---CCSSCTTCEEEECSCCSC---HHHHHHHHCSC---CEEEEEEC
T ss_pred HhCCEEEEEeCH-H--------------HHHHHHHHHHhhcCCCCEEEEecCCCC---HHHHHHHhCCC---CcEEEEeC
Confidence 999999999963 1 146778888888988988773 23343 23455444321 1121 12
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHH-HHHHHHHHHHHHHHHHHHH
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAE-VSKLAANAFLAQRISSVNA 232 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae-~~Kl~~N~~~~~~ia~~nE 232 (480)
..|....+|. ..+..+.. .+++..+.++++|+.++. .+.. +..... .+.+.. ..-+....++..
T Consensus 121 ~~p~~~~~g~---------~~~~~~~~--~~~~~~~~~~~l~~~~G~--~~~~-~e~~~d~~~a~~g-~gpa~~~~~~ea 185 (247)
T 3gt0_A 121 NTPALVGEGM---------SALCPNEM--VTEKDLEDVLNIFNSFGQ--TEIV-SEKLMDVVTSVSG-SSPAYVYMIIEA 185 (247)
T ss_dssp CGGGGGTCEE---------EEEEECTT--CCHHHHHHHHHHHGGGEE--EEEC-CGGGHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ChHHHHcCce---------EEEEeCCC--CCHHHHHHHHHHHHhCCC--EEEe-CHHHccHHHHHhc-cHHHHHHHHHHH
Confidence 3444333332 13333221 257889999999999853 4444 333222 233322 122333444445
Q ss_pred HHHHHHHcCCCHHHHHHHhcCC
Q 011650 233 MSALCEATGADVSQVSHAIGFD 254 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~~~ 254 (480)
+...+.+.|+|.++..+++...
T Consensus 186 l~~a~~~~Gl~~~~a~~~~~~~ 207 (247)
T 3gt0_A 186 MADAAVLDGMPRNQAYKFAAQA 207 (247)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 5555889999999999988643
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-14 Score=142.78 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=132.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVP--RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+|||+|||+|.||.++|..|+++ | ++|++||++++ +++.+++. ++++++++.+
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~--G~~~~~~V~v~~r~~~~~~~~~l~~~-------------------G~~~~~~~~e 80 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA--GVLAAHKIMASSPDMDLATVSALRKM-------------------GVKLTPHNKE 80 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT--TSSCGGGEEEECSCTTSHHHHHHHHH-------------------TCEEESCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCCcceEEEECCCccHHHHHHHHHc-------------------CCEEeCChHH
Confidence 47899999999999999999998 8 89999999986 77776531 3566778888
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEe
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQIL 153 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
++++||+||+||| |. .+.++++++.+.++++++|+..++ ++ .+.+.+.+.+...+.. .+.
T Consensus 81 ~~~~aDvVilav~-~~--------------~~~~vl~~l~~~l~~~~ivvs~s~gi~---~~~l~~~l~~~~~~~~-vv~ 141 (322)
T 2izz_A 81 TVQHSDVLFLAVK-PH--------------IIPFILDEIGADIEDRHIVVSCAAGVT---ISSIEKKLSAFRPAPR-VIR 141 (322)
T ss_dssp HHHHCSEEEECSC-GG--------------GHHHHHHHHGGGCCTTCEEEECCTTCC---HHHHHHHHHTTSSCCE-EEE
T ss_pred HhccCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEeCCCCC---HHHHHHHHhhcCCCCe-EEE
Confidence 8899999999998 32 257788899999988998887654 33 2345566654311112 222
Q ss_pred eCC---cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHH--HHHHHHHHH
Q 011650 154 SNP---EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAA--NAFLAQRIS 228 (480)
Q Consensus 154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--N~~~~~~ia 228 (480)
..| .....| ..++.++... +++..+.++++|+.++ ..+....-.....+.+.. |.|.. .
T Consensus 142 ~~p~~p~~~~~g---------~~v~~~g~~~--~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~a~~g~gpa~~~---~ 205 (322)
T 2izz_A 142 CMTNTPVVVREG---------ATVYATGTHA--QVEDGRLMEQLLSSVG--FCTEVEEDLIDAVTGLSGSGPAYAF---T 205 (322)
T ss_dssp EECCGGGGGTCE---------EEEEEECTTC--CHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHTTTHHHHHH---H
T ss_pred EeCCcHHHHcCC---------eEEEEeCCCC--CHHHHHHHHHHHHhCC--CEEEeCHHHHHHHHHHhcCHHHHHH---H
Confidence 233 222222 1355565422 4678899999999875 244443222233444432 33332 3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcC
Q 011650 229 SVNAMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v~~~~~~ 253 (480)
+++.++..+.+.|+|.+.+.+.+..
T Consensus 206 ~~eala~a~~~~Gl~~~~a~~l~~~ 230 (322)
T 2izz_A 206 ALDALADGGVKMGLPRRLAVRLGAQ 230 (322)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5555666688999999888877764
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=142.73 Aligned_cols=252 Identities=17% Similarity=0.137 Sum_probs=157.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||+.+|..|+++ |++|++| +++++++.+++.+..+..++.. ...++.+++++++ +.++|
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~------~~~~~~~~~~~~~-~~~~D 88 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEATGLRLETQSFD------EQVKVSASSDPSA-VQGAD 88 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHHCEEEECSSCE------EEECCEEESCGGG-GTTCS
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhCCeEEEcCCCc------EEEeeeeeCCHHH-cCCCC
Confidence 48999999999999999999998 9999999 9999999998643222222211 0123567788765 68999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHH-hhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILM-HNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~-~~~~g~~~~v~~~Pe~~ 159 (480)
+||+|||+. .+.++++.+.++++++++|+.. +...+..+.+.+.+. +...+.. ..+-.+.
T Consensus 89 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~-~nGi~~~~~l~~~~~~~vl~g~~---~~~a~~~ 149 (318)
T 3hwr_A 89 LVLFCVKST---------------DTQSAALAMKPALAKSALVLSL-QNGVENADTLRSLLEQEVAAAVV---YVATEMA 149 (318)
T ss_dssp EEEECCCGG---------------GHHHHHHHHTTTSCTTCEEEEE-CSSSSHHHHHHHHCCSEEEEEEE---EEEEEEE
T ss_pred EEEEEcccc---------------cHHHHHHHHHHhcCCCCEEEEe-CCCCCcHHHHHHHcCCcEEEEEE---EEeEEEc
Confidence 999999853 2478889999999999887654 334444455655552 1110100 0111223
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH------------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA------------------ 221 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------ 221 (480)
.|+.+.+... .++.+|.. +..+.+.++|+..+ .......|+...+|.|++.|+
T Consensus 150 gP~~~~~~~~--g~~~ig~~------~~~~~l~~~l~~~~-~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~ 220 (318)
T 3hwr_A 150 GPGHVRHHGR--GELVIEPT------SHGANLAAIFAAAG-VPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVR 220 (318)
T ss_dssp ETTEEEEEEE--EEEEECCC------TTTHHHHHHHHHTT-CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTT
T ss_pred CCeEEEEcCC--ceEEEcCC------HHHHHHHHHHHhCC-CCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhc
Confidence 3443322211 13456752 23466788888754 234556799999999999885
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHhcCCCC-CCCccc--cCCCCccccchhhh--HHHHHHHHHHCC
Q 011650 222 ---FLAQRISSVNAMSALCEATGADV-----SQVSHAIGFDSR-IGPKFL--NASVGFGGSCFQKD--ILNLVYICECNG 288 (480)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~gid~-----~~v~~~~~~~~~-i~~~~~--~pg~g~gG~c~~kD--~~~l~~~a~~~g 288 (480)
.+.+....+.|+..++++.|+++ +.+.+.+...+. .++++. .-|- -...| ..++++.++++|
T Consensus 221 ~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr-----~tEid~i~G~vv~~a~~~g 295 (318)
T 3hwr_A 221 GEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRRIAETMPRQSSSTAQDLARGK-----RSEIDHLNGLIVRRGDALG 295 (318)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSTTCCCHHHHHHHTTC-----CCSGGGTHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCcHHHHHHHcCC-----hhHHHHHHHHHHHHHHHhC
Confidence 23455678899999999999863 334443332211 111111 1111 01111 347888999999
Q ss_pred CchhhhHHH
Q 011650 289 LPEVANYWK 297 (480)
Q Consensus 289 ~~~~~~~~~ 297 (480)
++ .|+.+
T Consensus 296 v~--tP~~~ 302 (318)
T 3hwr_A 296 IP--VPANR 302 (318)
T ss_dssp CC--CHHHH
T ss_pred CC--CcHHH
Confidence 98 55444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=144.38 Aligned_cols=204 Identities=14% Similarity=0.077 Sum_probs=134.1
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+ |.||.++|..|+++ |++|++||+++++++.+.+.. +..+ ++.+++++|
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~g-------------------~~~~-~~~~~~~~a 68 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGMG-------------------IPLT-DGDGWIDEA 68 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHTT-------------------CCCC-CSSGGGGTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhcC-------------------CCcC-CHHHHhcCC
Confidence 479999999 99999999999998 999999999999988877521 1122 445668899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.. .+.++++++.+.++++++|++.|+..+ .+.+. +...+.. ++..+|.+.
T Consensus 69 DvVi~av~~~---------------~~~~v~~~l~~~l~~~~ivv~~s~~~~--~~~l~----~~~~~~~-~v~~~P~~~ 126 (286)
T 3c24_A 69 DVVVLALPDN---------------IIEKVAEDIVPRVRPGTIVLILDAAAP--YAGVM----PERADIT-YFIGHPCHP 126 (286)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEESCSHHH--HHTCS----CCCTTSE-EEEEEECCS
T ss_pred CEEEEcCCch---------------HHHHHHHHHHHhCCCCCEEEECCCCch--hHHHH----hhhCCCe-EEecCCCCc
Confidence 9999999842 257788899999999999988666432 12222 1111222 333566442
Q ss_pred cc---Cc---cccccCC----CCeEEEEccCCcchHHHHHHHHHHHhccCCCC---eEEeCCchhHHHH-HHHHHHHHHH
Q 011650 160 AE---GT---AINDLFK----PDRVLIGGRETPEGMKAIKALKDVYAHWVPED---RILCTNLWSAEVS-KLAANAFLAQ 225 (480)
Q Consensus 160 ~~---G~---a~~~~~~----~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~---~v~~~~~~~ae~~-Kl~~N~~~~~ 225 (480)
.+ +. ...+... ...++++... +++..+.++++|+.++ . .++..+....... |.+.|.....
T Consensus 127 ~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~---~~~~~~~v~~l~~~~G--~~~~~~~~v~~~~~~~~~~a~~n~~~~~ 201 (286)
T 3c24_A 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQG---PEEHYAIGADICETMW--SPVTRTHRVTTEQLAILEPGLSEMVAMP 201 (286)
T ss_dssp CSSCCCCSHHHHTCSSSSSSCEEEEEEEEES---CTHHHHHHHHHHHHHT--CSEEEEEECCHHHHHHHTTHHHHTTHHH
T ss_pred cccccccchhhccCcccccccceeeeeccCC---CHHHHHHHHHHHHHhc--CCcceEEEeChhHhHHHHHHHHHHHHHH
Confidence 22 11 1111100 0112222111 3678999999999985 3 3444444444444 8988865544
Q ss_pred -HHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011650 226 -RISSVNAMSALCEATGADVSQVSHAIGF 253 (480)
Q Consensus 226 -~ia~~nE~~~l~~~~gid~~~v~~~~~~ 253 (480)
.+++++++...+.+.|+|.+++.+.+..
T Consensus 202 ~~~~~~eal~~~~~~~Gl~~~~~~~~~~~ 230 (286)
T 3c24_A 202 FVETMVHAVDECADRYGIDRQAALDFMIG 230 (286)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4555556778888889999998887763
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=136.44 Aligned_cols=259 Identities=14% Similarity=0.061 Sum_probs=158.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEP-GLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||+.+|..|+++ |++|++|++++ .+.+++.+..+..+ +- ..-..+.+++++++ +..+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~g~~~~~~~g~------~~~~~~~~~~~~~~-~~~~D 71 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD--YEAIAGNGLKVFSINGD------FTLPHVKGYRAPEE-IGPMD 71 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT--HHHHHHTCEEEEETTCC------EEESCCCEESCHHH-HCCCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc--HHHHHhCCCEEEcCCCe------EEEeeceeecCHHH-cCCCC
Confidence 7999999999999999999998 99999999986 37777543222110 00 00002345678765 78999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+||+|||+.. +.++++.+.+++.++++|+.. +...+..+.+.+.+.+... ....+..+-.+..
T Consensus 72 ~vilavk~~~---------------~~~~l~~l~~~l~~~~~iv~l-~nGi~~~~~l~~~~~~~~v-~~~~~~~~a~~~~ 134 (312)
T 3hn2_A 72 LVLVGLKTFA---------------NSRYEELIRPLVEEGTQILTL-QNGLGNEEALATLFGAERI-IGGVAFLCSNRGE 134 (312)
T ss_dssp EEEECCCGGG---------------GGGHHHHHGGGCCTTCEEEEC-CSSSSHHHHHHHHTCGGGE-EEEEEEEECCBCS
T ss_pred EEEEecCCCC---------------cHHHHHHHHhhcCCCCEEEEe-cCCCCcHHHHHHHCCCCcE-EEEEEEeeeEEcC
Confidence 9999998531 256788999999988877643 2334444556655543210 0001112233445
Q ss_pred cCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHH-------------------
Q 011650 161 EGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANA------------------- 221 (480)
Q Consensus 161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------- 221 (480)
||...+.. +..+.+|..+.. +.+..+.+.++|+..+- ......|+...+|.|++.|+
T Consensus 135 p~~v~~~~--~g~~~ig~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~ 210 (312)
T 3hn2_A 135 PGEVHHLG--AGRIILGEFLPR-DTGRIEELAAMFRQAGV-DCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILAR 210 (312)
T ss_dssp SSEEEECE--EEEEEEEESSCC-CSHHHHHHHHHHHHTTC-CEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTS
T ss_pred CcEEEECC--CCeEEEecCCCC-ccHHHHHHHHHHHhCCC-CcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhC
Confidence 66554322 346778865322 24567788889887542 34556799999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHcC--CC-----HHHHHHHhcCCCCC-CCccccCCCCccccchhhh--HHHHHHHHHHCCC
Q 011650 222 --FLAQRISSVNAMSALCEATG--AD-----VSQVSHAIGFDSRI-GPKFLNASVGFGGSCFQKD--ILNLVYICECNGL 289 (480)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~g--id-----~~~v~~~~~~~~~i-~~~~~~pg~g~gG~c~~kD--~~~l~~~a~~~g~ 289 (480)
.+.+....+.|+.+++++.| ++ .+.+++.....++. ++++.+-- -|.-.-.| ..++++.|+++|+
T Consensus 211 ~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~tEid~i~G~vv~~a~~~gv 287 (312)
T 3hn2_A 211 DVSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEYKPSMEIDRE---EGRPLEIAAIFRTPLAYGAREGI 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSSCCCTTHHHHHHHHHTTSCSCCCHHHHHHH---TTCCCCHHHHTHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHhcCCCCCchHHHHHH---hCCCccHHHHhhHHHHHHHHhCC
Confidence 24455678899999999999 64 34455544432221 11110000 01111111 2377888999998
Q ss_pred chhhhHHH
Q 011650 290 PEVANYWK 297 (480)
Q Consensus 290 ~~~~~~~~ 297 (480)
+ .|+.+
T Consensus 288 ~--~P~~~ 293 (312)
T 3hn2_A 288 A--MPRVE 293 (312)
T ss_dssp C--CHHHH
T ss_pred C--CCHHH
Confidence 8 55333
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=137.80 Aligned_cols=254 Identities=15% Similarity=0.111 Sum_probs=156.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC---CCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY---EPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~---e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||+.+|..|+++ |++|++|++++ .+.+++.+..+. ..+.. -..+.++++++++.+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~-------~~~~~~~~~~~~~~~~ 71 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD--YETVKAKGIRIRSATLGDYT-------FRPAAVVRSAAELETK 71 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT--HHHHHHHCEEEEETTTCCEE-------ECCSCEESCGGGCSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh--HHHHHhCCcEEeecCCCcEE-------EeeeeeECCHHHcCCC
Confidence 7999999999999999999998 99999999987 266765322111 00000 0023456787775458
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC--
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP-- 156 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-- 156 (480)
+|+||+|||+... .++++.+.++++++++|+... ...+..+.+.+.+... .++++|
T Consensus 72 ~DlVilavK~~~~---------------~~~l~~l~~~l~~~t~Iv~~~-nGi~~~~~l~~~~~~~------~vl~g~~~ 129 (320)
T 3i83_A 72 PDCTLLCIKVVEG---------------ADRVGLLRDAVAPDTGIVLIS-NGIDIEPEVAAAFPDN------EVISGLAF 129 (320)
T ss_dssp CSEEEECCCCCTT---------------CCHHHHHTTSCCTTCEEEEEC-SSSSCSHHHHHHSTTS------CEEEEEEE
T ss_pred CCEEEEecCCCCh---------------HHHHHHHHhhcCCCCEEEEeC-CCCChHHHHHHHCCCC------cEEEEEEE
Confidence 9999999996432 356788899999888776433 3334445555554332 122333
Q ss_pred ---cccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH-----------
Q 011650 157 ---EFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF----------- 222 (480)
Q Consensus 157 ---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~----------- 222 (480)
.+..||...+. .+..+.+|..+.. +.+..+.+.++|+..+- ......|+...+|.|++.|+-
T Consensus 130 ~~a~~~~pg~v~~~--~~~~~~ig~~~~~-~~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~ 205 (320)
T 3i83_A 130 IGVTRTAPGEIWHQ--AYGRLMLGNYPGG-VSERVKTLAAAFEEAGI-DGIATENITTARWQKCVWNAAFNPLSVLSGGL 205 (320)
T ss_dssp EEEEEEETTEEEEE--EEEEEEEEESSSC-CCHHHHHHHHHHHHTTS-CEEECSCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred eceEEcCCCEEEEC--CCCEEEEecCCCC-ccHHHHHHHHHHHhCCC-CceECHHHHHHHHHHHHHHHhhhHHHHHHCCC
Confidence 23345554332 2446778854322 24567888889887542 345567999999999998741
Q ss_pred ---------HHHHHHHHHHHHHHHHHcCCCH-----HHHHHHhcCCCCC-CCccccCCCCccccchhhh--HHHHHHHHH
Q 011650 223 ---------LAQRISSVNAMSALCEATGADV-----SQVSHAIGFDSRI-GPKFLNASVGFGGSCFQKD--ILNLVYICE 285 (480)
Q Consensus 223 ---------~~~~ia~~nE~~~l~~~~gid~-----~~v~~~~~~~~~i-~~~~~~pg~g~gG~c~~kD--~~~l~~~a~ 285 (480)
+.+....+.|+..++++.|++. +.+++.....++. ++++.+- --|.-.-.| ..++++.|+
T Consensus 206 ~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~---~~gr~tEid~i~G~vv~~a~ 282 (320)
T 3i83_A 206 DTLDILSTQEGFVRAIMQEIRAVAAANGHPLPEDIVEKNVASTYKMPPYKTSMLVDF---EAGQPMETEVILGNAVRAGR 282 (320)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSCCCCCHHHHHH---HHTCCCCHHHHTHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCCCcHHHHH---HhCCCchHHHHccHHHHHHH
Confidence 3455678999999999999863 3344443322211 1111000 000111111 237788899
Q ss_pred HCCCchhhhHHH
Q 011650 286 CNGLPEVANYWK 297 (480)
Q Consensus 286 ~~g~~~~~~~~~ 297 (480)
++|++ .|+.+
T Consensus 283 ~~gv~--~P~~~ 292 (320)
T 3i83_A 283 RTRVA--IPHLE 292 (320)
T ss_dssp HTTCC--CHHHH
T ss_pred HhCCC--CCHHH
Confidence 99998 55444
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=138.10 Aligned_cols=185 Identities=12% Similarity=0.095 Sum_probs=123.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh---
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (480)
+|||+|||+|.||.++|..|.++ |++|++||+++++.+.+.+. ++..+++++++++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~~a~~~-------------------G~~~~~~~~e~~~~a~ 66 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDE-------------------GFDVSADLEATLQRAA 66 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHT-------------------TCCEESCHHHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeeeCCHHHHHHhcc
Confidence 47899999999999999999998 99999999999988876642 1344677777665
Q ss_pred -cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC
Q 011650 78 -EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
+||+||+|||. ..+.++++++.++ +++++|++.+++.....+.+.+.+.. .. ++..+|
T Consensus 67 ~~aDlVilavP~---------------~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~~----~~-~v~~HP 125 (341)
T 3ktd_A 67 AEDALIVLAVPM---------------TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNMQ----HR-YVGSHP 125 (341)
T ss_dssp HTTCEEEECSCH---------------HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTCG----GG-EECEEE
T ss_pred cCCCEEEEeCCH---------------HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCCC----Cc-EecCCc
Confidence 47999999983 2356777888886 78899999888876665555443321 12 334445
Q ss_pred c----ccccCccccccCCCCeEEEEccCCcchHH--------HHHHHHHHHhccCCCCeEEeCCc-hhHHHHHHHHHHHH
Q 011650 157 E----FLAEGTAINDLFKPDRVLIGGRETPEGMK--------AIKALKDVYAHWVPEDRILCTNL-WSAEVSKLAANAFL 223 (480)
Q Consensus 157 e----~~~~G~a~~~~~~~~~vviG~~~~~~~~~--------~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~ 223 (480)
- ...+..+..+++....+++-.. ...+++ .++.+.++|+.++ ..+..++. ..-..+.++...-.
T Consensus 126 maG~e~sG~~aa~~~Lf~g~~~iltp~-~~~~~e~~~~~~~~~~~~v~~l~~~~G--a~v~~~~~~~HD~~~A~vshlPh 202 (341)
T 3ktd_A 126 MAGTANSGWSASMDGLFKRAVWVVTFD-QLFDGTDINSTWISIWKDVVQMALAVG--AEVVPSRVGPHDAAAARVSHLTH 202 (341)
T ss_dssp CCSCC-CCGGGCCSSTTTTCEEEECCG-GGTSSCCCCHHHHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHH
T ss_pred cccccccchhhhhhHHhcCCeEEEEeC-CCCChhhhccchHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHHHHhHHHH
Confidence 3 3334344455655544444321 111345 7899999999986 34555554 44566777776555
Q ss_pred HHHHHHH
Q 011650 224 AQRISSV 230 (480)
Q Consensus 224 ~~~ia~~ 230 (480)
.+..+++
T Consensus 203 ~ia~aL~ 209 (341)
T 3ktd_A 203 ILAETLA 209 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-14 Score=137.33 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=142.9
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||+||| +|.||.++|..|++. |++|+++|++++. +..+++.+|
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~--G~~V~~~~~~~~~--------------------------------~~~~~~~~a 66 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWA--------------------------------VAESILANA 66 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGG--------------------------------GHHHHHTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhC--CCeEEEEECCccc--------------------------------CHHHHhcCC
Confidence 35899999 999999999999998 9999999987531 234568899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||.+ .+.++++++.++++++++|++.+++.....+.+.+.+ . .. ++..+|.+.
T Consensus 67 DvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~--~~-~v~~hP~~g 125 (298)
T 2pv7_A 67 DVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---T--GA-VLGLHPMFG 125 (298)
T ss_dssp SEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---S--SE-EEEEEECSC
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---C--CC-EEeeCCCCC
Confidence 9999999853 2577888999999999999988877765555443322 1 12 344456433
Q ss_pred ccCccccccCCCCeEEEE-ccCCcchHHHHHHHHHHHhccCCCCeEEeCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIG-GRETPEGMKAIKALKDVYAHWVPEDRILCTNL-WSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG-~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
.+. ..+....+++. +. +++..+.+.++|+.++ ..++.++. ...++++++.+....+.+++++.+..
T Consensus 126 ~~~----~~~~g~~~~l~~~~----~~~~~~~v~~l~~~~G--~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~-- 193 (298)
T 2pv7_A 126 ADI----ASMAKQVVVRCDGR----FPERYEWLLEQIQIWG--AKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSK-- 193 (298)
T ss_dssp TTC----SCCTTCEEEEEEEE----CGGGTHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--
T ss_pred CCc----hhhcCCeEEEecCC----CHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 222 12222233333 32 3567889999999875 35555554 45889999999877777777776652
Q ss_pred HHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHH-HHHHHHHCCCchhhhHHHHHHHHhhHhHHHHHHHHHH
Q 011650 238 EATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILN-LVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVS 316 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~-l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (480)
.|.+..+..+.+. .|| +|... +...+ +.+ ..+|+.....|..... .++.+.+
T Consensus 194 --~g~~~~~~~~la~-------------~~f------~~~~~~~~ria---~~~--p~~~~di~~sn~~~~~-~l~~~~~ 246 (298)
T 2pv7_A 194 --QPINLANLLALSS-------------PIY------RLELAMIGRLF---AQD--AELYADIIMDKSENLA-VIETLKQ 246 (298)
T ss_dssp --SSCCHHHHHHTCC-------------HHH------HHHHHHHHHHH---TSC--HHHHHHHHC----CHH-HHHHHHH
T ss_pred --cCCCHHHHHhhcC-------------HHH------HHHHHHHHHHh---cCC--HHHHHHHHHHCHHHHH-HHHHHHH
Confidence 6777765554332 112 33222 33333 223 4577777777776665 5555555
Q ss_pred Hh
Q 011650 317 SM 318 (480)
Q Consensus 317 ~~ 318 (480)
.+
T Consensus 247 ~l 248 (298)
T 2pv7_A 247 TY 248 (298)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-13 Score=131.89 Aligned_cols=194 Identities=14% Similarity=0.189 Sum_probs=126.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+|||+|||+|.||..+|..|+++ |+ +|++||+++++.+.+.+. -+++.+++..++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~--g~~~~~V~v~dr~~~~~~~l~~~------------------~gi~~~~~~~~~~~ 62 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN--GYDPNRICVTNRSLDKLDFFKEK------------------CGVHTTQDNRQGAL 62 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT--TCCGGGEEEECSSSHHHHHHHHT------------------TCCEEESCHHHHHS
T ss_pred CCEEEEEcccHHHHHHHHHHHHC--CCCCCeEEEEeCCHHHHHHHHHH------------------cCCEEeCChHHHHh
Confidence 37899999999999999999998 88 999999999999888752 13567788888899
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-CCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEeeC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-SKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
+||+||+|||. . .+.++++++.++ ++++++|+.. ++++ .+.+++.+.... .+ +-..
T Consensus 63 ~aDvVilav~p-~--------------~~~~vl~~l~~~~l~~~~iiiS~~agi~---~~~l~~~l~~~~---~v-vr~m 120 (280)
T 3tri_A 63 NADVVVLAVKP-H--------------QIKMVCEELKDILSETKILVISLAVGVT---TPLIEKWLGKAS---RI-VRAM 120 (280)
T ss_dssp SCSEEEECSCG-G--------------GHHHHHHHHHHHHHTTTCEEEECCTTCC---HHHHHHHHTCCS---SE-EEEE
T ss_pred cCCeEEEEeCH-H--------------HHHHHHHHHHhhccCCCeEEEEecCCCC---HHHHHHHcCCCC---eE-EEEe
Confidence 99999999973 1 257788899888 8888777632 2233 345555554311 22 2233
Q ss_pred Cc---ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCch-hHHHHHHH--HHHHHHHHHHH
Q 011650 156 PE---FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLW-SAEVSKLA--ANAFLAQRISS 229 (480)
Q Consensus 156 Pe---~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~--~N~~~~~~ia~ 229 (480)
|. ....|. ..+..+. ..+++..+.+.++|+.++. .+.+.+.. ....+-+. .+.|.. .+
T Consensus 121 Pn~p~~v~~g~---------~~l~~~~--~~~~~~~~~v~~l~~~iG~--~~~v~~E~~~d~~talsgsgpa~~~---~~ 184 (280)
T 3tri_A 121 PNTPSSVRAGA---------TGLFANE--TVDKDQKNLAESIMRAVGL--VIWVSSEDQIEKIAALSGSGPAYIF---LI 184 (280)
T ss_dssp CCGGGGGTCEE---------EEEECCT--TSCHHHHHHHHHHHGGGEE--EEECSSHHHHHHHHHHTTSHHHHHH---HH
T ss_pred cCChHHhcCcc---------EEEEeCC--CCCHHHHHHHHHHHHHCCC--eEEECCHHHhhHHHHHhccHHHHHH---HH
Confidence 32 222221 2233332 2257899999999999853 44443321 11122222 233333 33
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhc
Q 011650 230 VNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 230 ~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+.-+...+.+.|++.++..+++.
T Consensus 185 ~eal~~a~v~~Gl~~~~a~~l~~ 207 (280)
T 3tri_A 185 MEALQEAAEQLGLTKETAELLTE 207 (280)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 34445557789999988887765
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=132.93 Aligned_cols=194 Identities=9% Similarity=0.134 Sum_probs=126.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||+|||+|.||..+|..|++. |++|.+||+++++.+.+.+.. ++..+++++++++++|
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~D 62 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQL------------------ALPYAMSHQDLIDQVD 62 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHHH------------------TCCBCSSHHHHHHTCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHHc------------------CCEeeCCHHHHHhcCC
Confidence 68999999999999999999987 899999999999988876410 1334667888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceE--EeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQ--ILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~--v~~~Pe 157 (480)
+||+|+| |. .+.++++ .+.++++|+..+ ++++. .+.+.+... ..+. +...|.
T Consensus 63 ~Vi~~v~-~~--------------~~~~v~~----~l~~~~~vv~~~~~~~~~---~l~~~~~~~---~~~v~~~p~~~~ 117 (259)
T 2ahr_A 63 LVILGIK-PQ--------------LFETVLK----PLHFKQPIISMAAGISLQ---RLATFVGQD---LPLLRIMPNMNA 117 (259)
T ss_dssp EEEECSC-GG--------------GHHHHHT----TSCCCSCEEECCTTCCHH---HHHHHHCTT---SCEEEEECCGGG
T ss_pred EEEEEeC-cH--------------hHHHHHH----HhccCCEEEEeCCCCCHH---HHHHhcCCC---CCEEEEcCCchH
Confidence 9999998 31 1233333 345777777663 55543 344444321 1221 111222
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALC 237 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (480)
....| ...++.|+. .+++..+.++++|+.++ ..+..+.......+++..+.. .....+++.++..+
T Consensus 118 ~~~~g--------~~~i~~~~~---~~~~~~~~~~~ll~~~G--~~~~~~~~~~d~~~al~g~~~-~~~~~~~~~la~~~ 183 (259)
T 2ahr_A 118 QILQS--------STALTGNAL---VSQELQARVRDLTDSFG--STFDISEKDFDTFTALAGSSP-AYIYLFIEALAKAG 183 (259)
T ss_dssp GGTCE--------EEEEEECTT---CCHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHHTTHH-HHHHHHHHHHHHHH
T ss_pred HHcCc--------eEEEEcCCC---CCHHHHHHHHHHHHhCC--CEEEecHHHccHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 22222 112333331 14788999999999875 244555556667777753221 12345666777779
Q ss_pred HHcCCCHHHHHHHhcC
Q 011650 238 EATGADVSQVSHAIGF 253 (480)
Q Consensus 238 ~~~gid~~~v~~~~~~ 253 (480)
.+.|+|.+++.+++..
T Consensus 184 ~~~Gl~~~~~~~~~~~ 199 (259)
T 2ahr_A 184 VKNGIPKAKALEIVTQ 199 (259)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 9999999999988764
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=128.09 Aligned_cols=186 Identities=13% Similarity=0.094 Sum_probs=125.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+||| +|.||..+|..|+++ |++|+++|+++++.+.+.+.. ...+ ....+. .++++++++++|
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~--g~~V~~~~r~~~~~~~~~~~~--------~~~~---~~~~~~-~~~~~~~~~~~D 66 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAAEY--------RRIA---GDASIT-GMKNEDAAEACD 66 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHHHH--------HHHH---SSCCEE-EEEHHHHHHHCS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh--------cccc---ccCCCC-hhhHHHHHhcCC
Confidence 7999999 999999999999998 999999999999888776420 0000 012355 357777789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCc-----------ccHHHHHHHHHhhcCCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPV-----------KTAEAIEKILMHNSRGI 148 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~-----------gt~~~l~~~l~~~~~g~ 148 (480)
+||+|+|.+ .+.++++++.+.++ +++|++.++ +++ ...+++++.+.. .
T Consensus 67 ~Vi~~~~~~---------------~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~ 126 (212)
T 1jay_A 67 IAVLTIPWE---------------HAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----E 126 (212)
T ss_dssp EEEECSCHH---------------HHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----S
T ss_pred EEEEeCChh---------------hHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----C
Confidence 999999742 24566777777674 888887776 331 224666665542 2
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhcc-CCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 149 NFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHW-VPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
.+.-++.|.......... ......+++++. +++..+.+.++|+.+ +. .++..++.+.+.+.|.+.|.+..+..
T Consensus 127 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~g~----~~~~~~~v~~l~~~~~G~-~~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 127 KVVSALHTIPAARFANLD-EKFDWDVPVCGD----DDESKKVVMSLISEIDGL-RPLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp CEEECCTTCCHHHHHCTT-CCCCEEEEEEES----CHHHHHHHHHHHHHSTTE-EEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred eEEEEccchHHHHhhCcC-CCCCccEEEECC----cHHHHHHHHHHHHHcCCC-CceeccchhHHHHhcchHHHHHHHHH
Confidence 333334465443322111 111113456664 378899999999998 63 45667789999999999998765543
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-13 Score=128.53 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=122.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+|||+|||+|.||.++|..|+++ | ++|++||+++++ . +++.++++++++
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~--g~~~~~~v~~~~~~~~~-----~--------------------g~~~~~~~~~~~ 56 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA--NIIKKENLFYYGPSKKN-----T--------------------TLNYMSSNEELA 56 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH--TSSCGGGEEEECSSCCS-----S--------------------SSEECSCHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCCCCCeEEEEeCCccc-----C--------------------ceEEeCCHHHHH
Confidence 37999999999999999999998 8 799999998754 1 135567888888
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCce-E-Eee
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINF-Q-ILS 154 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~-v~~ 154 (480)
+++|+||+|||.. .+.++++++.+.++++.+|.+.+++++. .+.+.+.+. ..+ . +..
T Consensus 57 ~~~D~vi~~v~~~---------------~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~---~~~v~~~p~ 115 (262)
T 2rcy_A 57 RHCDIIVCAVKPD---------------IAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSE---NKIVWVMPN 115 (262)
T ss_dssp HHCSEEEECSCTT---------------THHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTT---SEEEEEECC
T ss_pred hcCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCC---CcEEEECCC
Confidence 9999999999832 1467788888888544455666677654 344444321 111 1 112
Q ss_pred CCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHH--HHHHHHHHHHHHH
Q 011650 155 NPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAA--NAFLAQRISSVNA 232 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--N~~~~~~ia~~nE 232 (480)
.|.....| ..++.++... +++..+.++++|+.++ .++...+-.....+++.. |.+. ..++..
T Consensus 116 ~p~~~~~g---------~~~~~~~~~~--~~~~~~~~~~ll~~~G--~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~a 179 (262)
T 2rcy_A 116 TPCLVGEG---------SFIYCSNKNV--NSTDKKYVNDIFNSCG--IIHEIKEKDMDIATAISGCGPAYV---YLFIES 179 (262)
T ss_dssp GGGGGTCE---------EEEEEECTTC--CHHHHHHHHHHHHTSE--EEEECCGGGHHHHHHHTTSHHHHH---HHHHHH
T ss_pred hHHHHcCC---------eEEEEeCCCC--CHHHHHHHHHHHHhCC--CEEEeCHHHccHHHHHHccHHHHH---HHHHHH
Confidence 33332222 1234444321 4788999999999875 244444333444555533 3333 455555
Q ss_pred HHHHHHHcCCCHHHHHHHhc
Q 011650 233 MSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 233 ~~~l~~~~gid~~~v~~~~~ 252 (480)
+...+.+.|++.++..+.+.
T Consensus 180 l~~~~~~~Gl~~~~~~~~~~ 199 (262)
T 2rcy_A 180 LIDAGVKNGLSRELSKNLVL 199 (262)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 66667899999988777665
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=130.80 Aligned_cols=190 Identities=9% Similarity=0.146 Sum_probs=118.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.||..+|..|++. | ++|++||+++++++.+.+. -++++++++++++ ++|
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~~~------------------~g~~~~~~~~~~~-~~D 59 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKE------------------LGVETSATLPELH-SDD 59 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCCCC-TTS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEECCCHHHHHHHHHh------------------cCCEEeCCHHHHh-cCC
Confidence 7999999999999999999998 8 9999999999999887652 0245566776767 999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcCCCceEEe-e-CCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSRGINFQIL-S-NPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~-~-~Pe 157 (480)
+||+||| +. .+.++++.+.+ + +++|+.. |++++ +.+.+.+.+ +..+.-+ . .|.
T Consensus 60 ~vi~~v~-~~--------------~~~~v~~~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~---~~~~v~~~~~~~~ 115 (263)
T 1yqg_A 60 VLILAVK-PQ--------------DMEAACKNIRT--N-GALVLSVAAGLSV---GTLSRYLGG---TRRIVRVMPNTPG 115 (263)
T ss_dssp EEEECSC-HH--------------HHHHHHTTCCC--T-TCEEEECCTTCCH---HHHHHHTTS---CCCEEEEECCGGG
T ss_pred EEEEEeC-ch--------------hHHHHHHHhcc--C-CCEEEEecCCCCH---HHHHHHcCC---CCcEEEEcCCHHH
Confidence 9999998 31 24555555544 4 7888876 66665 445444432 1122111 1 232
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeC-CchhHHHHHHH--HHHHHHHHHHHHHHHH
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCT-NLWSAEVSKLA--ANAFLAQRISSVNAMS 234 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~--~N~~~~~~ia~~nE~~ 234 (480)
....|.. .++.|+. .+++..+.++++|+.++ ..++.. +-.-...+-+. .+.+. ..++..+.
T Consensus 116 ~~~~g~~--------~i~~~~~---~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~al~g~~~~~~---~~~~~~l~ 179 (263)
T 1yqg_A 116 KIGLGVS--------GMYAEAE---VSETDRRIADRIMKSVG--LTVWLDDEEKMHGITGISGSGPAYV---FYLLDALQ 179 (263)
T ss_dssp GGTCEEE--------EEECCTT---SCHHHHHHHHHHHHTTE--EEEECSSTTHHHHHHHHTTSHHHHH---HHHHHHHH
T ss_pred HHcCceE--------EEEcCCC---CCHHHHHHHHHHHHhCC--CEEEeCChhhccHHHHHHccHHHHH---HHHHHHHH
Confidence 2222211 2333321 14778999999999875 244444 21112222221 12222 33444445
Q ss_pred HHHHHcCCCHHHHHHHhc
Q 011650 235 ALCEATGADVSQVSHAIG 252 (480)
Q Consensus 235 ~l~~~~gid~~~v~~~~~ 252 (480)
..+++.|++.+++.+.+.
T Consensus 180 e~~~~~G~~~~~~~~~~~ 197 (263)
T 1yqg_A 180 NAAIRQGFDMAEARALSL 197 (263)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 558899999988887764
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-13 Score=145.15 Aligned_cols=204 Identities=16% Similarity=0.175 Sum_probs=142.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-------hcCCCEEEecCHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-------CRGKNLFFSTDVE 73 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-------~~~~~l~~t~d~~ 73 (480)
|.||+|||+|.||..+|..++.+ |++|+++|++++.++...+... ..++..... ....+++++++.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~a--G~~V~l~D~~~~~l~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIIT----FTLEKEASRAHQNGQASAKPKLRFSSSTK 389 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHH----HHHHHHHHHHHTTTCCCCCCCEEEESCGG
T ss_pred ccEEEEEcccHHHHHHHHHHHhC--CCchhcccchHhhhhhHHHHHH----HHHHHHHHhccccchhhhhhhhcccCcHH
Confidence 46899999999999999999998 9999999999988765443100 001111111 1235688999987
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEE-EEecCCCcccHHHHHHHHHhhcC--CCce
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVPVKTAEAIEKILMHNSR--GINF 150 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (480)
+ +++||+||.||++ +.+++ +++++++.+++++++|+ .++||+++.. ++..+..... |.+|
T Consensus 390 ~-l~~aDlVIEAV~E-----------~l~iK--~~vf~~le~~~~~~aIlASNTSsl~i~~---ia~~~~~p~r~ig~HF 452 (742)
T 3zwc_A 390 E-LSTVDLVVEAVFE-----------DMNLK--KKVFAELSALCKPGAFLCTNTSALNVDD---IASSTDRPQLVIGTHF 452 (742)
T ss_dssp G-GGSCSEEEECCCS-----------CHHHH--HHHHHHHHHHSCTTCEEEECCSSSCHHH---HHTTSSCGGGEEEEEC
T ss_pred H-HhhCCEEEEeccc-----------cHHHH--HHHHHHHhhcCCCCceEEecCCcCChHH---HHhhcCCccccccccc
Confidence 6 8999999999985 34555 78999999999999988 4556777553 2211111110 2222
Q ss_pred EEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHH
Q 011650 151 QILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSV 230 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (480)
|+|....+- -.||- +..| ++++++.+.++.+.+++ .++.+.|.. .++.| .+...++
T Consensus 453 ---fnP~~~m~L---------VEvi~-g~~T--s~e~~~~~~~~~~~lgK-~pV~vkd~p-----GFi~N---Ri~~~~~ 508 (742)
T 3zwc_A 453 ---FSPAHVMRL---------LEVIP-SRYS--SPTTIATVMSLSKKIGK-IGVVVGNCY-----GFVGN---RMLAPYY 508 (742)
T ss_dssp ---CSSTTTCCE---------EEEEE-CSSC--CHHHHHHHHHHHHHTTC-EEEECCCST-----TTTHH---HHHHHHH
T ss_pred ---cCCCCCCce---------EEEec-CCCC--CHHHHHHHHHHHHHhCC-CCcccCCCC-----CccHH---HHhhHHH
Confidence 466544331 13554 4434 68999999999999874 566655433 57777 5678999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhc
Q 011650 231 NAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 231 nE~~~l~~~~gid~~~v~~~~~ 252 (480)
+|...+.++ |+++.++.+++.
T Consensus 509 ~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 509 NQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHH
Confidence 999998886 799999999874
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=131.47 Aligned_cols=218 Identities=15% Similarity=0.089 Sum_probs=129.9
Q ss_pred CceEEEECCChhHHHHHHHHHH-cCCCCeEEEEe---CCHHHHHH-HHcCCCCC--CCCChHHHHHHhcCCCE-EEecCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIAL-KCPSIEVAVVD---ISVPRINA-WNSDQLPI--YEPGLEEVVKQCRGKNL-FFSTDV 72 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~-~~~G~~V~~~D---~~~~~v~~-l~~g~~~~--~e~~l~~~~~~~~~~~l-~~t~d~ 72 (480)
||||+|||+|+||+.+|..|++ + |++|++|| +++++++. ++++...+ .+++.+.. ....++ .+++|+
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~--G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~ 76 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD--GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQT---EVKSRPKVITKDP 76 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST--TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEE---EEEECCSEEESCH
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccc---eeeccceEEeCCH
Confidence 5899999999999999999987 5 89999999 88888888 45433111 11110000 000123 378899
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEE
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQI 152 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (480)
++++.++|+||+|||++. +.+++++|.++++++++|+.. +...|......+.+.+.... ....
T Consensus 77 ~~a~~~aD~Vilav~~~~---------------~~~v~~~l~~~l~~~~ivv~~-~~~~G~~~~~~~~l~~~~~~-~v~~ 139 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFA---------------HEGYFQAMAPYVQDSALIVGL-PSQAGFEFQCRDILGDKAAA-VSMM 139 (404)
T ss_dssp HHHHTTCSEEEECSCGGG---------------HHHHHHHHTTTCCTTCEEEET-TCCTTHHHHHHHHHGGGGGT-SEEE
T ss_pred HHHhCCCCEEEEeCchHH---------------HHHHHHHHHhhCCCCcEEEEc-CCCccHHHHHHHHHHhcCCC-eEEE
Confidence 888899999999998642 367889999999988887753 22235333333444432111 1111
Q ss_pred e--eCCcc---cccCccccccCCCCeEEEEccCC--cchHHHHHHHHHHHhccCCCC-eEEeCCchhHHHH---------
Q 011650 153 L--SNPEF---LAEGTAINDLFKPDRVLIGGRET--PEGMKAIKALKDVYAHWVPED-RILCTNLWSAEVS--------- 215 (480)
Q Consensus 153 ~--~~Pe~---~~~G~a~~~~~~~~~vviG~~~~--~~~~~~~~~~~~l~~~~~~~~-~v~~~~~~~ae~~--------- 215 (480)
. ..|.. ..||.++.......++.+|.... ...++..+.++++|.. . .....|+...++.
T Consensus 140 ~~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~di~~~~l~~N~~~~~~~ 215 (404)
T 3c7a_A 140 SFETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAE----PVFRLAKHFLEMLIMSYSFVHPAI 215 (404)
T ss_dssp EESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSS----SEEEECSCHHHHHHTTCTTHHHHH
T ss_pred EecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHHhCCC----CceeEcCCEeeeeecCCceeccHH
Confidence 1 23322 34674444444445666775422 2234455555555531 1 1123344322221
Q ss_pred ------H-----------HHHH---HHHHHHHHHHHHHHHHHHHc-----CCCH
Q 011650 216 ------K-----------LAAN---AFLAQRISSVNAMSALCEAT-----GADV 244 (480)
Q Consensus 216 ------K-----------l~~N---~~~~~~ia~~nE~~~l~~~~-----gid~ 244 (480)
+ +..| ..+.+...++.|+.++++++ |+++
T Consensus 216 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~ 269 (404)
T 3c7a_A 216 LFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDL 269 (404)
T ss_dssp HHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 0 2232 45577788999999999999 9876
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=122.56 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=106.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||.++|..|+++ |++|++||++++ ++++||
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~~-------------------------------------~~~~aD 59 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKDQ-------------------------------------ATTLGE 59 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCC-------------------------------------CSSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH-------------------------------------HhccCC
Confidence 48999999999999999999998 999999998642 256899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CC-cc-------c----HHHHHHHHHhhcCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VP-VK-------T----AEAIEKILMHNSRG 147 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~-~g-------t----~~~l~~~l~~~~~g 147 (480)
+||+|||+ ..+.++++++.+.++ +++|++.|+ ++ ++ + .+.+++.+. +
T Consensus 60 ~vi~av~~---------------~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~----~ 119 (209)
T 2raf_A 60 IVIMAVPY---------------PALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP----D 119 (209)
T ss_dssp EEEECSCH---------------HHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT----T
T ss_pred EEEEcCCc---------------HHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC----C
Confidence 99999983 235677888888888 888887766 23 12 3 333443332 1
Q ss_pred CceE----EeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH
Q 011650 148 INFQ----ILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF 222 (480)
Q Consensus 148 ~~~~----v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~ 222 (480)
..+. ..++|.+..+... . ..+..+++++. +++..+.++++|+.++. .++..++++.+.+.|.+.|.+
T Consensus 120 ~~vv~~~~~~~~p~~~~~~~~--g-~~~~~~~~~g~----~~~~~~~v~~ll~~~G~-~~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 120 SQVLKAFNTTFAATLQSGQVN--G-KEPTTVLVAGN----DDSAKQRFTRALADSPL-EVKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp SEEEECSTTSCHHHHHHSEET--T-TEECEEEEEES----CHHHHHHHHHHTTTSSC-EEEEEESGGGHHHHHHHHHHH
T ss_pred CcEEEeeecccHhhccccccC--C-CCCceeEEcCC----CHHHHHHHHHHHHHcCC-ceEeCCCHhHHHHhcchHHHH
Confidence 1221 1125555433211 1 01224556765 46889999999998762 456778899999999988854
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=126.10 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=121.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
|||+|||+|.||+.+|..|+++ |++|++|+++++.++..... +. ....++.+..+++ ..+|
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~-------g~---------~~~~~~~~~~~~~~~~~D 64 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRHAKTITYYTVP-------HA---------PAQDIVVKGYEDVTNTFD 64 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESSCEEEEEESST-------TS---------CCEEEEEEEGGGCCSCEE
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeccCcEEEEecC-------Ce---------eccceecCchHhcCCCCC
Confidence 7999999999999999999998 89999999986543211110 10 0122333444444 7899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEee-CCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILS-NPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~ 159 (480)
+||+|||+. .+.++++.+.+.++++++|+... ...+..+. +..... -..+.+ +-.+.
T Consensus 65 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~~-nGi~~~~~----~~~~~v--~~g~~~~~a~~~ 122 (294)
T 3g17_A 65 VIIIAVKTH---------------QLDAVIPHLTYLAHEDTLIILAQ-NGYGQLEH----IPFKNV--CQAVVYISGQKK 122 (294)
T ss_dssp EEEECSCGG---------------GHHHHGGGHHHHEEEEEEEEECC-SSCCCGGG----CCCSCE--EECEEEEEEEEE
T ss_pred EEEEeCCcc---------------CHHHHHHHHHHhhCCCCEEEEec-cCcccHhh----CCCCcE--EEEEEEEEEEEc
Confidence 999999852 24678888999888887776433 22233221 211100 000111 11233
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH-----------------
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF----------------- 222 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~----------------- 222 (480)
.||.... .+..+.++ . .+..+.+.++|+.-+ .......|+...+|.|++.|+-
T Consensus 123 ~pg~v~~---~~~~~~~~-~-----~~~~~~l~~~l~~~~-~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~ 192 (294)
T 3g17_A 123 GDVVTHF---RDYQLRIQ-D-----NALTRQFRDLVQDSQ-IDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHN 192 (294)
T ss_dssp TTEEEEE---EEEEEEEE-C-----SHHHHHHHHHTTTSS-CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGS
T ss_pred CCCEEEE---CCCEEecC-c-----cHHHHHHHHHHHhCC-CceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcC
Confidence 4554421 13455554 2 346778888888753 1345568999999999999872
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCC
Q 011650 223 ---LAQRISSVNAMSALCEATGAD 243 (480)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~gid 243 (480)
+.+....+.|+.+++++.|++
T Consensus 193 ~~~~~l~~~~~~E~~~va~a~G~~ 216 (294)
T 3g17_A 193 PEIRILCRQLLLDGCRVAQAEGLN 216 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334456889999999999976
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=123.25 Aligned_cols=166 Identities=14% Similarity=0.146 Sum_probs=104.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..|+++ |++|++ +|+++++++++.+.. +....+++ .++++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~--g~~V~~v~~r~~~~~~~l~~~~-----------------g~~~~~~~-~~~~~~a 82 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA--QIPAIIANSRGPASLSSVTDRF-----------------GASVKAVE-LKDALQA 82 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT--TCCEEEECTTCGGGGHHHHHHH-----------------TTTEEECC-HHHHTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCCHHHHHHHHHHh-----------------CCCcccCh-HHHHhcC
Confidence 57999999999999999999998 999999 999999888876420 11122344 4458999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC------cc------cHHHHHHHHHhhcCC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP------VK------TAEAIEKILMHNSRG 147 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~------~g------t~~~l~~~l~~~~~g 147 (480)
|+||+|||.. .+.++++++.+ + ++++|+..++.- +. +.+.+++.+...
T Consensus 83 DvVilavp~~---------------~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 142 (220)
T 4huj_A 83 DVVILAVPYD---------------SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA--- 142 (220)
T ss_dssp SEEEEESCGG---------------GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC---
T ss_pred CEEEEeCChH---------------HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC---
Confidence 9999999732 24566666665 4 477777655322 11 445565555321
Q ss_pred CceEEee--CCcc-cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHH
Q 011650 148 INFQILS--NPEF-LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEV 214 (480)
Q Consensus 148 ~~~~v~~--~Pe~-~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~ 214 (480)
.+.-++ .|.. ...|..... .+..+++++. ++++.+.++++|+.++. .++..++++.|.+
T Consensus 143 -~vv~~~~~~~~~v~~~g~~~~~--~~~~v~~~g~----~~~~~~~v~~l~~~~G~-~~~~~G~l~~a~~ 204 (220)
T 4huj_A 143 -KVVKAFNTLPAAVLAADPDKGT--GSRVLFLSGN----HSDANRQVAELISSLGF-APVDLGTLAASGP 204 (220)
T ss_dssp -EEEEESCSSCHHHHTSCSBCSS--CEEEEEEEES----CHHHHHHHHHHHHHTTC-EEEECCSHHHHHH
T ss_pred -CEEECCCCCCHHHhhhCcccCC--CCeeEEEeCC----CHHHHHHHHHHHHHhCC-CeEeeCChhhcch
Confidence 121111 1111 111211111 1234556665 48899999999999863 4566677666644
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-11 Score=112.65 Aligned_cols=170 Identities=16% Similarity=0.066 Sum_probs=104.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||..+|..|++. |++|+++|+++++.+.+.+. +++.+ +.+++++++|
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~-------------------g~~~~-~~~~~~~~~D 85 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGS--GFKVVVGSRNPKRTARLFPS-------------------AAQVT-FQEEAVSSPE 85 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHSBT-------------------TSEEE-EHHHHTTSCS
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCcee-cHHHHHhCCC
Confidence 47999999999999999999998 89999999999988877642 13334 6677789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH-H---HHHHHHHhhcCCCceEEeeCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-E---AIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~---~l~~~l~~~~~g~~~~v~~~P 156 (480)
+||+|+|.. .. .++++ +.+.+ ++++|++.|+..+-.. + ...+.+++...+..+.-.+++
T Consensus 86 vVi~av~~~-~~--------------~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~ 148 (215)
T 2vns_A 86 VIFVAVFRE-HY--------------SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNV 148 (215)
T ss_dssp EEEECSCGG-GS--------------GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTT
T ss_pred EEEECCChH-HH--------------HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEecccc
Confidence 999999842 11 11222 44445 6788887776543211 0 112233332211122111232
Q ss_pred ccc---ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHH
Q 011650 157 EFL---AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA 218 (480)
Q Consensus 157 e~~---~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~ 218 (480)
... .++.. . .....++.|+ +++..+.++++|+.++. ..+..++++.+...+.+
T Consensus 149 ~~~~~~~~~~~--~-g~~~~~~~g~-----~~~~~~~v~~ll~~~G~-~~~~~g~~~~~~~~e~~ 204 (215)
T 2vns_A 149 ISAWTLQAGPR--D-GNRQVPICGD-----QPEAKRAVSEMALAMGF-MPVDMGSLASAWEVEAM 204 (215)
T ss_dssp BCHHHHHTCSC--S-SCCEEEEEES-----CHHHHHHHHHHHHHTTC-EEEECCSGGGHHHHHHS
T ss_pred ccHhHhccccc--C-CceeEEEecC-----CHHHHHHHHHHHHHcCC-ceEeecchhhhhHhhhh
Confidence 111 12211 1 1111344443 37889999999999863 45666788888777643
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=121.56 Aligned_cols=196 Identities=16% Similarity=0.110 Sum_probs=118.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
.|||+|||+|.||.++|..|++. |++|+++|+++++ .+...+ .++.++ ++++++++|
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~--G~~V~~~~~~~~~~~~~a~~-------------------~G~~~~-~~~e~~~~a 73 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEA-------------------HGLKVA-DVKTAVAAA 73 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHH-------------------TTCEEE-CHHHHHHTC
T ss_pred CCEEEEECchHHHHHHHHHHHHC--cCEEEEEECChHHHHHHHHH-------------------CCCEEc-cHHHHHhcC
Confidence 37899999999999999999998 8999999998765 333332 123445 777888999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHH-HHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc-C-CCceEEeeCC
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS-R-GINFQILSNP 156 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~-g~~~~v~~~P 156 (480)
|+||+|||.. ...++++ ++.++++++++|++.+++ .. .+++.. . +.++ +..+|
T Consensus 74 DvVilavp~~---------------~~~~v~~~~i~~~l~~~~ivi~~~gv----~~----~~~~~~~~~~~~v-v~~~P 129 (338)
T 1np3_A 74 DVVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHGF----SI----HYNQVVPRADLDV-IMIAP 129 (338)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCCH----HH----HTTSSCCCTTCEE-EEEEE
T ss_pred CEEEEeCCcH---------------HHHHHHHHHHHhhCCCCCEEEEcCCc----hh----HHHhhcCCCCcEE-EeccC
Confidence 9999999842 2356777 888899999988865432 11 112111 1 2333 33455
Q ss_pred cccccCccccccC----CCCeEEEEccCCcchHHHHHHHHHHHhccCCCCe--EEeCCch-hHHHHHHHHHH-HHHHHHH
Q 011650 157 EFLAEGTAINDLF----KPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDR--ILCTNLW-SAEVSKLAANA-FLAQRIS 228 (480)
Q Consensus 157 e~~~~G~a~~~~~----~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~--v~~~~~~-~ae~~Kl~~N~-~~~~~ia 228 (480)
..|+.+...++ ..+.++.-+.. .++++.+.+.++++.++. .. +..++.. ..+...+.+++ +.....+
T Consensus 130 --~gp~~a~~~l~~~G~g~~~ii~~~~~--~~~~a~~~~~~l~~~lG~-~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~ 204 (338)
T 1np3_A 130 --KAPGHTVRSEFVKGGGIPDLIAIYQD--ASGNAKNVALSYACGVGG-GRTGIIETTFKDETETDLFGEQAVLCGGCVE 204 (338)
T ss_dssp --SSCSHHHHHHHHTTCCCCEEEEEEEC--SSSCHHHHHHHHHHHTTH-HHHCEEECCHHHHHHHHHHHHHHTTTHHHHH
T ss_pred --CCCchhHHHHHhccCCCeEEEEecCC--CCHHHHHHHHHHHHHcCC-CccceEeechhcccchHHHHHHHHHhhhHHH
Confidence 34444433222 22333221111 135678889999998752 13 5556543 45566666552 1122223
Q ss_pred HHHHHHHHHHHcCCCHHHH
Q 011650 229 SVNAMSALCEATGADVSQV 247 (480)
Q Consensus 229 ~~nE~~~l~~~~gid~~~v 247 (480)
++........+.|+++++.
T Consensus 205 ~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 205 LVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHH
Confidence 3333333344678777543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=119.84 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=96.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|+.. |++|++||+++++.+...+ .++..+ ++++++++||+
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~-~l~e~l~~aDv 213 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPF--GVQRFLYTGRQPRPEEAAE-------------------FQAEFV-STPELAAQSDF 213 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCCEEEEESSSCCHHHHHT-------------------TTCEEC-CHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcchhHHHh-------------------cCceeC-CHHHHHhhCCE
Confidence 6899999999999999999987 9999999998765554432 123444 78888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|......+ ..+ +.+.+.+++++++|+.|+.++...+.+.+.+++... +.|+ +.||.
T Consensus 214 Vi~~vp~~~~t~~-----~i~--------~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~ep 277 (330)
T 2gcg_A 214 IVVACSLTPATEG-----LCN--------KDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV---TSPEP 277 (330)
T ss_dssp EEECCCCCTTTTT-----CBS--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred EEEeCCCChHHHH-----hhC--------HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCC---CCCCC
Confidence 9999986532211 111 345567899999999999988888888888876432 2343 57776
Q ss_pred cccCccccccCCCCeEEE
Q 011650 159 LAEGTAINDLFKPDRVLI 176 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vvi 176 (480)
..+++. ++..+.+++
T Consensus 278 l~~~~~---l~~~~nvi~ 292 (330)
T 2gcg_A 278 LPTNHP---LLTLKNCVI 292 (330)
T ss_dssp CCTTCG---GGGCTTEEE
T ss_pred CCCCCh---hhcCCCEEE
Confidence 655544 344455655
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=119.66 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=105.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|||+|.||..+|..|+++ ++| .+||+++++.+.+.+.. +. .+++++++++++
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~~-----------------g~--~~~~~~~~~~~~ 59 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEVY-----------------GG--KAATLEKHPELN 59 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHT-----------------CC--CCCSSCCCCC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHHc-----------------CC--ccCCHHHHHhcC
Confidence 47999999999999999998764 788 59999999988776410 11 345666667889
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|||... +.++++++. +++++|++.|+..+... +++. +.....|...
T Consensus 60 DvVilav~~~~---------------~~~v~~~l~---~~~~ivi~~s~~~~~~~------l~~~-----~~~~~~p~~~ 110 (276)
T 2i76_A 60 GVVFVIVPDRY---------------IKTVANHLN---LGDAVLVHCSGFLSSEI------FKKS-----GRASIHPNFS 110 (276)
T ss_dssp -CEEECSCTTT---------------HHHHHTTTC---CSSCCEEECCSSSCGGG------GCSS-----SEEEEEECSC
T ss_pred CEEEEeCChHH---------------HHHHHHHhc---cCCCEEEECCCCCcHHH------HHHh-----hccccchhhh
Confidence 99999998531 244444443 56788887775433321 1111 1122233332
Q ss_pred ccC--ccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchh---HHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEG--TAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWS---AEVSKLAANAFLAQRISSVNAMS 234 (480)
Q Consensus 160 ~~G--~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~---ae~~Kl~~N~~~~~~ia~~nE~~ 234 (480)
.+| .....+...+ +++++. ++..+.++++++.++. .++.+..... ....+++.|... .+++|+.
T Consensus 111 ~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~l~~~lG~-~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~ 179 (276)
T 2i76_A 111 FSSLEKALEMKDQIV-FGLEGD-----ERGLPIVKKIAEEISG-KYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSK 179 (276)
T ss_dssp C--CTTGGGCGGGCC-EEECCC-----TTTHHHHHHHHHHHCS-CEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHH
T ss_pred cCCCchhHHHhCCCe-EEEEeC-----hHHHHHHHHHHHHhCC-CEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 222 1111122222 344543 4458889999999863 3454443221 234577777432 3567777
Q ss_pred HHHHHcCCCHH
Q 011650 235 ALCEATGADVS 245 (480)
Q Consensus 235 ~l~~~~gid~~ 245 (480)
.++++.|++..
T Consensus 180 ~~~~~~Gl~~~ 190 (276)
T 2i76_A 180 RIYTLLGLDEP 190 (276)
T ss_dssp HHHHTTTCSCH
T ss_pred HHHHHcCCChH
Confidence 89999999876
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=6e-11 Score=117.48 Aligned_cols=201 Identities=15% Similarity=0.068 Sum_probs=115.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+|||+|||+|.||+.+|..|+ + |++|+++++++++++.+++.+..+..++.. . ...+..+. ++...+|
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~-~-----~~~~~~~~---~~~~~~D 69 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRRQEQAAAIQSEGIRLYKGGEE-F-----RADCSADT---SINSDFD 69 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHCEEEEETTEE-E-----EECCEEES---SCCSCCS
T ss_pred CCEEEEECCCHHHHHHHHHHh-c--CCceEEEECCHHHHHHHHhCCceEecCCCe-e-----cccccccc---cccCCCC
Confidence 389999999999999999999 8 999999999999988887633222111100 0 00111111 2357899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCce--EEee-CCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINF--QILS-NPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~--~v~~-~Pe 157 (480)
+||+|||.. .+.++++.+.+. .+++ |+. -....+..+. +++..+...+ .+++ +-.
T Consensus 70 ~vilavK~~---------------~~~~~l~~l~~~-~~~~-ivs-~~nGi~~~e~----l~~~~~~~~vl~g~~~~~a~ 127 (307)
T 3ego_A 70 LLVVTVKQH---------------QLQSVFSSLERI-GKTN-ILF-LQNGMGHIHD----LKDWHVGHSIYVGIVEHGAV 127 (307)
T ss_dssp EEEECCCGG---------------GHHHHHHHTTSS-CCCE-EEE-CCSSSHHHHH----HHTCCCSCEEEEEEECCEEE
T ss_pred EEEEEeCHH---------------HHHHHHHHhhcC-CCCe-EEE-ecCCccHHHH----HHHhCCCCcEEEEEEeeceE
Confidence 999999842 146677777664 4555 432 2333343333 3332111111 1222 223
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHH---------------
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAF--------------- 222 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~--------------- 222 (480)
+..||...+.. ..++.+|..+.. .+..+.+.++|+..+ .......|+....|.|++-|+-
T Consensus 128 ~~~pg~v~~~~--~g~~~iG~~~~~--~~~~~~l~~~l~~ag-~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l 202 (307)
T 3ego_A 128 RKSDTAVDHTG--LGAIKWSAFDDA--EPDRLNILFQHNHSD-FPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGEL 202 (307)
T ss_dssp ECSSSEEEEEE--CCCEEEEECTTC--CGGGGTTTTSSCCTT-SCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHH
T ss_pred ECCCCEEEEee--eeeEEEEeCCCC--cHHHHHHHHHhhhCC-CCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchh
Confidence 44566654332 235678875332 122333334444322 1234557999999999999852
Q ss_pred ------HHHHHHHHHHHHHHHHHc
Q 011650 223 ------LAQRISSVNAMSALCEAT 240 (480)
Q Consensus 223 ------~~~~ia~~nE~~~l~~~~ 240 (480)
+.+....+.|+..++...
T Consensus 203 ~~~~~~~~l~~~l~~E~~~va~~~ 226 (307)
T 3ego_A 203 LTTPAYLAFMKLVFQEACRILKLE 226 (307)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTCS
T ss_pred hcChhHHHHHHHHHHHHHHHHhcc
Confidence 334445677777776543
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-11 Score=117.75 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=93.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..|+.. |++|++||++++. +...+. ++.+ +++++++++||+
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~~~l~~aDv 207 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGF--NMRILYYSRTRKE-EVEREL-------------------NAEF-KPLEDLLRESDF 207 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHH-------------------CCEE-CCHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHhC--CCEEEEECCCcch-hhHhhc-------------------Cccc-CCHHHHHhhCCE
Confidence 6899999999999999999987 9999999998766 333210 1233 478888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|..... ..+. .+.+.+.+++++++|+.|+.++...+.+.+.+++... +.|+ +.||.
T Consensus 208 Vil~vp~~~~t-----------~~~i--~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~EP 271 (334)
T 2dbq_A 208 VVLAVPLTRET-----------YHLI--NEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV---FEEEP 271 (334)
T ss_dssp EEECCCCCTTT-----------TTCB--CHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred EEECCCCChHH-----------HHhh--CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecC---CCCCC
Confidence 99999875422 1111 1345667899999999999888888888888876321 2343 56663
Q ss_pred cccCccccccCCCCeEEE
Q 011650 159 LAEGTAINDLFKPDRVLI 176 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vvi 176 (480)
.+...++..+++++
T Consensus 272 ----~~~~~L~~~~~vi~ 285 (334)
T 2dbq_A 272 ----YYNEELFKLDNVVL 285 (334)
T ss_dssp ----CCCHHHHHCTTEEE
T ss_pred ----CCCchhhcCCCEEE
Confidence 22344555566765
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-09 Score=102.02 Aligned_cols=156 Identities=9% Similarity=0.009 Sum_probs=100.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|||+|||+|.||.+||..|.++ ||+|++||+. ++ +.+||
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~--G~~V~~~~~~-------------------------------------~~-~~~aD 45 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSV--GHYVTVLHAP-------------------------------------ED-IRDFE 45 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHT--TCEEEECSSG-------------------------------------GG-GGGCS
T ss_pred CcEEEEEeeCHHHHHHHHHHHHC--CCEEEEecCH-------------------------------------HH-hccCC
Confidence 38999999999999999999998 9999999872 11 46789
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-CcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+|||.. .+.++++++.++++++++|+++|+. +....+.+ .+.+ . .++..+|-+.
T Consensus 46 --ilavP~~---------------ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~----~~~g--~-~fvg~HPm~g 101 (232)
T 3dfu_A 46 --LVVIDAH---------------GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPL----ETSG--G-IVMSAHPIGQ 101 (232)
T ss_dssp --EEEECSS---------------CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHH----HHTT--C-EEEEEEEEET
T ss_pred --EEEEcHH---------------HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHH----HhCC--C-cEEEeeeCCC
Confidence 9999853 2577888999999999999987643 32222222 2222 2 3456677642
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRISSVNAMSALCEA 239 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (480)
. +.++.++ ++++.+.++++++.++. .++.++...-... ++.-...-..++++++..++.+.
T Consensus 102 ~-----------~~~i~a~-----d~~a~~~l~~L~~~lG~--~vv~~~~~~hd~~-~AAvsh~nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 102 D-----------RWVASAL-----DELGETIVGLLVGELGG--SIVEIADDKRAQL-AAALTYAGFLSTLQRDASYFLDE 162 (232)
T ss_dssp T-----------EEEEEES-----SHHHHHHHHHHHHHTTC--EECCCCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----------ceeeeCC-----CHHHHHHHHHHHHHhCC--EEEEeCHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1344443 37789999999999863 5555554321111 11111123445566666666633
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=113.50 Aligned_cols=122 Identities=22% Similarity=0.225 Sum_probs=85.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|+||.++|..|+.+..|++|+++|+++++++.+..... ..... .....++++++|+++ +++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~----~~~~~---~~~~~~i~~t~d~~~-l~~aDv 72 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMY----ESGPV---GLFDTKVTGSNDYAD-TANSDI 72 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHH----TTHHH---HTCCCEEEEESCGGG-GTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHH----hhhhc---ccCCcEEEECCCHHH-HCCCCE
Confidence 7999999999999999999985237999999999988876542100 00000 011245788889877 999999
Q ss_pred EEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+|+|+|.... ....|+ +.++++.+.+.++.+ +.+|++ -|.|+++...+
T Consensus 73 Viiav~~p~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~viv-~tNP~~~~~~~ 127 (310)
T 1guz_A 73 VIITAGLPRKPG----MTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIMTHV 127 (310)
T ss_dssp EEECCSCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHHHHH
T ss_pred EEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEE-EcCchHHHHHH
Confidence 999999986541 113454 666788888888864 454444 37898886443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=116.43 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=81.7
Q ss_pred ceEEEECCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+. .. |++|++||++++..+...+ .++.++++++++++.||
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aD 222 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGL--GMKLVYYDVAPADAETEKA-------------------LGAERVDSLEELARRSD 222 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHHHHCS
T ss_pred CEEEEEEECHHHHHHHHHHHHhc--CCEEEEECCCCcchhhHhh-------------------cCcEEeCCHHHHhccCC
Confidence 58999999999999999998 76 8999999998755443321 02344567888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|..... ..+. .+.+.+.+++++++|+.|+.++...+.+.+.|++.
T Consensus 223 vVil~vp~~~~t-----------~~li--~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~ 273 (348)
T 2w2k_A 223 CVSVSVPYMKLT-----------HHLI--DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273 (348)
T ss_dssp EEEECCCCSGGG-----------TTCB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEEeCCCChHH-----------HHHh--hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhC
Confidence 999999864221 1111 12345678999999999999888888888888763
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.7e-12 Score=116.22 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=100.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||..+|..|.+. |++|++||++++ .+.+.. .++..+ ++.++++.+|+
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~-~~~~~~-------------------~g~~~~-~~~~~~~~aDv 76 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQC--GYSVVFGSRNPQ-VSSLLP-------------------RGAEVL-CYSEAASRSDV 76 (201)
Confidence 7899999999999999999988 899999999876 333321 012333 55667889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCc------ccHHHHHHHHHhhcCCCceEEeeC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV------KTAEAIEKILMHNSRGINFQILSN 155 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~------gt~~~l~~~l~~~~~g~~~~v~~~ 155 (480)
||+|||... +.+++ ++.+ +.++++||+.++..+ +..+.+.+.+..... .. .+...
T Consensus 77 Vilav~~~~---------------~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~v-vr-a~~n~ 137 (201)
T 2yjz_A 77 IVLAVHREH---------------YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHV-VK-AFNTI 137 (201)
Confidence 999998531 12223 3433 345788887776543 222334333322100 00 01111
Q ss_pred Cc-ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHH
Q 011650 156 PE-FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA 218 (480)
Q Consensus 156 Pe-~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~ 218 (480)
|. ...+|... .....++.|++ ++..+.+.++|+.++. ..+..++++.+.+.|.+
T Consensus 138 ~a~~~~~g~l~---g~~~~~~~g~~-----~~~~~~v~~ll~~~G~-~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 138 SAWALQSGTLD---ASRQVFVCGND-----SKAKDRVMDIARTLGL-TPLDQGSLVAAKEIENY 192 (201)
Confidence 21 12223210 01112455543 6788899999999874 46677888888888754
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=108.52 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=86.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +...... ....++++|+|+++++++|
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~~ea~~~a 79 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA 79 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECChhHHHHHHHH--------HHhhhhccCCCCEEEEeCCHHHHhCCC
Confidence 6999999999999999999998 88 999999999887763210 1111111 1235788899998789999
Q ss_pred CEEEEEccCCCCcCCCCCC----CCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 80 NIVFVSVNTPTKTQGLGAG----KAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~----~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
|+||+++.+|.... .. ...|+ ..+++..+.|.++. ++.++++ .|+|.++...+
T Consensus 80 DiVi~a~g~p~~~g---~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNP~~~~t~~ 141 (331)
T 1pzg_A 80 DCVIVTAGLTKVPG---KPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIV-VTNPLDCMVKV 141 (331)
T ss_dssp SEEEECCSCSSCTT---CCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CCSSHHHHHHH
T ss_pred CEEEEccCCCCCCC---cccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-EcCchHHHHHH
Confidence 99999997765431 00 13342 44678888888887 5666654 68888876443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.8e-10 Score=109.73 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=89.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||++++..+ +....+++++++++||+
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------g~~~~~~l~ell~~aDv 218 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAF--DCPISYFSRSKKPNT------------------------NYTYYGSVVELASNSDI 218 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCCTTC------------------------CSEEESCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCchhcc------------------------CceecCCHHHHHhcCCE
Confidence 5899999999999999999987 999999999764310 12345688888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|..... ..+. -+++.+.+++++++|+.|+..+-.++.+.+.|++... +.|+ +.+|.
T Consensus 219 Vil~vP~~~~t-----------~~li--~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv---~~~EP 282 (333)
T 3ba1_A 219 LVVACPLTPET-----------THII--NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDV---FEREP 282 (333)
T ss_dssp EEECSCCCGGG-----------TTCB--CHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESC---CTTTT
T ss_pred EEEecCCChHH-----------HHHh--hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEec---CCCCC
Confidence 99999863211 1111 0234456788999999999888888888888876432 2343 45554
Q ss_pred cccCccccccCCCCeEEEE
Q 011650 159 LAEGTAINDLFKPDRVLIG 177 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG 177 (480)
.. . ..++..+.+++.
T Consensus 283 ~~-~---~~L~~~~nvilt 297 (333)
T 3ba1_A 283 EV-P---EKLFGLENVVLL 297 (333)
T ss_dssp CC-C---GGGGGCTTEEEC
T ss_pred CC-c---chhhcCCCEEEC
Confidence 21 1 334444556543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=108.03 Aligned_cols=109 Identities=10% Similarity=0.089 Sum_probs=81.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++... +...+ .+++..++++++++.||+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDi 218 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAF--GMNVLVWGRENSK-ERARA-------------------DGFAVAESKDALFEQSDV 218 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSHHHH-HHHHH-------------------TTCEECSSHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHhC--CCEEEEECCCCCH-HHHHh-------------------cCceEeCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999998643 22221 124556688898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++|+|......+ .. -+...+.++++.++|+.|+.++-..+.+.+.|++..
T Consensus 219 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 269 (352)
T 3gg9_A 219 LSVHLRLNDETRS-----II--------TVADLTRMKPTALFVNTSRAELVEENGMVTALNRGR 269 (352)
T ss_dssp EEECCCCSTTTTT-----CB--------CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTS
T ss_pred EEEeccCcHHHHH-----hh--------CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCC
Confidence 9999985322111 11 234567789999999999887777777888887653
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=108.71 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=90.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||++++. +...+ .++..+ ++++++++||+
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~-~l~e~l~~aDi 203 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPF--GVKLYYWSRHRKV-NVEKE-------------------LKARYM-DIDELLEKSDI 203 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCH-HHHHH-------------------HTEEEC-CHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcch-hhhhh-------------------cCceec-CHHHHHhhCCE
Confidence 5899999999999999999987 9999999998765 32221 024443 78888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC---CCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~ 158 (480)
|++|+|..... ..+. -+.+.+.++++ ++++.|+..+...+.+.+.+++... |.|+ +.+|.
T Consensus 204 Vil~vp~~~~t-----------~~~i--~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv---~~~EP 266 (333)
T 2d0i_A 204 VILALPLTRDT-----------YHII--NEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDV---FEKEP 266 (333)
T ss_dssp EEECCCCCTTT-----------TTSB--CHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESC---CSSSS
T ss_pred EEEcCCCChHH-----------HHHh--CHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecC---CCCCC
Confidence 99999865222 1111 12344568889 9999998887777778777776421 2343 56554
Q ss_pred cccCccccccCCCC-eEEEE
Q 011650 159 LAEGTAINDLFKPD-RVLIG 177 (480)
Q Consensus 159 ~~~G~a~~~~~~~~-~vviG 177 (480)
.. . +.++..+ .+++.
T Consensus 267 ~~-~---~~L~~~~~nvilt 282 (333)
T 2d0i_A 267 VR-E---HELFKYEWETVLT 282 (333)
T ss_dssp CS-C---CGGGGCTTTEEEC
T ss_pred CC-C---chHHcCCCCEEEc
Confidence 32 2 3455555 66653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-09 Score=106.00 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=84.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|+||.++|..|+.+ |+ +|+++|+++++++..... +...... ....+++.++|+ +++++|
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a 73 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTY-DDLAGA 73 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence 7999999999999999999998 87 899999999887754321 1111111 123568888998 669999
Q ss_pred CEEEEEccCCCCcCCCC-CCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 80 NIVFVSVNTPTKTQGLG-AGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~-~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||+++++|......+ +....|+ ..++++.+.|.++. ++.++++ -|.|.++...
T Consensus 74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNP~~~~t~ 134 (322)
T 1t2d_A 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIV-VTNPVDVMVQ 134 (322)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-CSSSHHHHHH
T ss_pred CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-ecCChHHHHH
Confidence 99999998775431000 0002333 45677888888887 5666655 4778887543
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=107.30 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++..+ .....++++++++.||+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------~~~~~~~l~ell~~aDi 176 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAF--GMRVIAYTRSSVDQN------------------------VDVISESPADLFRQSDF 176 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSCCCTT------------------------CSEECSSHHHHHHHCSE
T ss_pred chheeeccCchhHHHHHHHHhh--CcEEEEEeccccccc------------------------cccccCChHHHhhccCe
Confidence 5899999999999999999988 999999999753211 12345688888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++|+|......+ .. .+...+.+++++++|+.|+.++-..+.+.+.|++..
T Consensus 177 V~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~ 227 (290)
T 3gvx_A 177 VLIAIPLTDKTRG-----MV--------NSRLLANARKNLTIVNVARADVVSKPDMIGFLKERS 227 (290)
T ss_dssp EEECCCCCTTTTT-----CB--------SHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred EEEEeeccccchh-----hh--------hHHHHhhhhcCceEEEeehhcccCCcchhhhhhhcc
Confidence 9999984322111 11 234567899999999999988888888888887643
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-09 Score=104.41 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=83.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +...... ....++++++|+ +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK--DLGDVYMFDIIEGVPQGKALD--------LNHCMALIGSPAKIFGENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHH--------HHhHhhccCCCCEEEECCCH-HHHCCC
Confidence 6899999999999999999998 88 999999999888753211 1111111 123578898998 669999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+||+++++|.... ....|+ ..++++.+.|.++. ++.++++- |.|.++..
T Consensus 84 D~VI~avg~p~k~g----~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~~~~t 138 (328)
T 2hjr_A 84 DVVIITAGVPRKPN----MTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI-TNPLDAMV 138 (328)
T ss_dssp SEEEECCSCCCCTT----CCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHH
T ss_pred CEEEEcCCCCCCCC----CchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe-cCchHHHH
Confidence 99999998775431 112344 44677888888887 56666553 66777643
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-09 Score=103.95 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=80.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~ 77 (480)
||||+|||+|.||.++|..|+.+ | ++|+++|+++++++.+.... ..... ......+. ++|+ ++++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~--g~~~~V~l~d~~~~~~~~~~~~l--------~~~~~-~~~~~~~~~~~d~-~~~~ 68 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ--GVADDYVFIDANEAKVKADQIDF--------QDAMA-NLEAHGNIVINDW-AALA 68 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHHH--------HHHGG-GSSSCCEEEESCG-GGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEcCCHHHHHHHHHHH--------Hhhhh-hcCCCeEEEeCCH-HHhC
Confidence 78999999999999999999998 7 89999999999887765310 00000 00112333 5777 5689
Q ss_pred cCCEEEEEccCCCC----cCCCCCCCC-----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 78 EANIVFVSVNTPTK----TQGLGAGKA-----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~----~~~~~~~~~-----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+||+|+|.|.. .. .. + .++..++++++.+.++.+ +.+|++ .|.|.++...
T Consensus 69 ~aDvViiav~~~~~~~~~~g---~~-r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~-~tNp~~~~~~ 130 (309)
T 1hyh_A 69 DADVVISTLGNIKLQQDNPT---GD-RFAELKFTSSMVQSVGTNLKESGF-HGVLVV-ISNPVDVITA 130 (309)
T ss_dssp TCSEEEECCSCGGGTC-----------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred CCCEEEEecCCcccCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE-EcCcHHHHHH
Confidence 99999999997642 10 00 1 123346777888888764 566655 6788877433
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=104.75 Aligned_cols=108 Identities=10% Similarity=0.084 Sum_probs=79.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+... |++|++||+ +++....... +....++++++++.||
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~l~ell~~aD 204 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEASY--------------------QATFHDSLDSLLSVSQ 204 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHHH--------------------TCEECSSHHHHHHHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcChhhhhhc--------------------CcEEcCCHHHHHhhCC
Confidence 5899999999999999999877 899999999 7755321111 1344557888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|......+ -. -+...+.++++.++|+.|+..+-..+.+.+.+++.
T Consensus 205 vVil~~p~~~~t~~-----~i--------~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g 255 (320)
T 1gdh_A 205 FFSLNAPSTPETRY-----FF--------NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 255 (320)
T ss_dssp EEEECCCCCTTTTT-----CB--------SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEEeccCchHHHh-----hc--------CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999985321100 11 13455778999999998887666667777777764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-09 Score=103.49 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=80.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-HhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-QCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|+||.++|..|+.+ |+ +|.++|+++++++..... +.+... .....++++++|+ +++++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~--g~~~v~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~ 70 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALD--------LYEASPIEGFDVRVTGTNNY-ADTAN 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCccHHHHHHHh--------HHHhHhhcCCCeEEEECCCH-HHHCC
Confidence 36999999999999999999998 76 899999998877643221 111000 1123568888898 56999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+||+++++|.... ..+.|+ ..++++.+.+.++. ++.+|++ .|.|.++...+
T Consensus 71 aD~Vi~a~g~p~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNPv~~~t~~ 128 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPG----MSREDLIKVNADITRACISQAAPLS-PNAVIIM-VNNPLDAMTYL 128 (309)
T ss_dssp CSEEEECCCC------------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEE-CCSSHHHHHHH
T ss_pred CCEEEEcCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-cCCchHHHHHH
Confidence 999999999886441 112333 44566777777775 5666655 58898886443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=102.10 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=78.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++. +...+. +... .+++++++.||+
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~ell~~aDv 199 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANAL--GMNILLYDPYPNE-ERAKEV-------------------NGKF-VDLETLLKESDV 199 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHT-------------------TCEE-CCHHHHHHHCSE
T ss_pred ceEEEEccCHHHHHHHHHHHHC--CCEEEEECCCCCh-hhHhhc-------------------Cccc-cCHHHHHhhCCE
Confidence 5899999999999999999987 9999999998765 322221 1233 367888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 200 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g 249 (307)
T 1wwk_A 200 VTIHVPLVESTYH-----LIN--------EERLKLMKKTAILINTSRGPVVDTNALVKALKEG 249 (307)
T ss_dssp EEECCCCSTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCChHHhh-----hcC--------HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999985322100 111 2345678999999999987666667777777764
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=108.52 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=79.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++..+.+ .......++++.++.||+
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv 194 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASAL--GMHVIGVNTTGHPADHF---------------------HETVAFTATADALATANF 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCCCCTTC---------------------SEEEEGGGCHHHHHHCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCEEEEECCCcchhHhH---------------------hhccccCCHHHHHhhCCE
Confidence 5899999999999999999987 99999999975432111 112234567888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++|+|......+ -. -+.....++++.++|+.|+.++-..+.+.+.|++..
T Consensus 195 V~l~lPlt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~ 245 (324)
T 3evt_A 195 IVNALPLTPTTHH-----LF--------STELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQ 245 (324)
T ss_dssp EEECCCCCGGGTT-----CB--------SHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred EEEcCCCchHHHH-----hc--------CHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCC
Confidence 9999984322111 11 134566789999999999988888888888887643
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-09 Score=104.84 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=79.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++....... +... .++++.++.||+
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~-~~l~ell~~aDv 199 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAM--GMKVLAYDILDIREKAEKI--------------------NAKA-VSLEELLKNSDV 199 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHT--------------------TCEE-CCHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCcchhHHHhc--------------------Ccee-cCHHHHHhhCCE
Confidence 5899999999999999999987 9999999998766422111 1233 377888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 200 Vvl~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 249 (313)
T 2ekl_A 200 ISLHVTVSKDAKP-----IID--------YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG 249 (313)
T ss_dssp EEECCCCCTTSCC-----SBC--------HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT
T ss_pred EEEeccCChHHHH-----hhC--------HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 9999986432111 111 2345678999999999987776677787877764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=106.63 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=81.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||+++...+...+ .+....+++++.++.||+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 223 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPF--GCNLLYHDRLQMAPELEKE-------------------TGAKFVEDLNEMLPKCDV 223 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--CCEEEEECSSCCCHHHHHH-------------------HCCEECSCHHHHGGGCSE
T ss_pred CEEeEEEeCHHHHHHHHHHHHC--CCEEEEeCCCccCHHHHHh-------------------CCCeEcCCHHHHHhcCCE
Confidence 5899999999999999999987 9999999997543333322 123455688998999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -. -+...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 224 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 273 (351)
T 3jtm_A 224 IVINMPLTEKTRG-----MF--------NKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG 273 (351)
T ss_dssp EEECSCCCTTTTT-----CB--------SHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEECCCCCHHHHH-----hh--------cHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhC
Confidence 9999985322111 11 13455678999999999988777778888888764
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=101.38 Aligned_cols=107 Identities=8% Similarity=0.095 Sum_probs=79.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++...+... +.+..+++++.++.||+
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~---------------------g~~~~~~l~ell~~sDv 230 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGF--GLAIHYHNRTRLSHALEE---------------------GAIYHDTLDSLLGASDI 230 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHT---------------------TCEECSSHHHHHHTCSE
T ss_pred CEEEEEEeChhHHHHHHHHHHC--CCEEEEECCCCcchhhhc---------------------CCeEeCCHHHHHhhCCE
Confidence 5899999999999999999876 999999999753322111 23455688898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ -. -+...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 231 V~l~~Plt~~T~~-----li--------~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 280 (345)
T 4g2n_A 231 FLIAAPGRPELKG-----FL--------DHDRIAKIPEGAVVINISRGDLINDDALIEALRSK 280 (345)
T ss_dssp EEECSCCCGGGTT-----CB--------CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 9999985322111 11 13455678999999999988777777788888764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=99.36 Aligned_cols=117 Identities=23% Similarity=0.306 Sum_probs=80.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHH--HH--HcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRIN--AW--NSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~--~l--~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
+|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++ .+ ..+ .++.. ..+++.+++.+
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~-----------~~~v~~~~~~~- 71 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAKERVEAEVLDMQHG-SSFYP-----------TVSIDGSDDPE- 71 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHHHT-GGGST-----------TCEEEEESCGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHHHHHHHHHHhh-hhhcC-----------CeEEEeCCCHH-
Confidence 58999999999999999999998 88 9999999988776 22 222 11110 12456666764
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE 138 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~ 138 (480)
++.+||+||+|+++|.... .... +...++++++.+.++ .++++|+. .|.|.++...+.
T Consensus 72 ~~~~aD~Vii~v~~~~~~g----~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~-~~Np~~~~~~~~ 134 (319)
T 1lld_A 72 ICRDADMVVITAGPRQKPG----QSRLELVGATVNILKAIMPNLVKV-APNAIYML-ITNPVDIATHVA 134 (319)
T ss_dssp GGTTCSEEEECCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE-CCSSHHHHHHHH
T ss_pred HhCCCCEEEECCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE-ecCchHHHHHHH
Confidence 5899999999998764320 0011 234455777888876 56676654 577877755443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-08 Score=101.76 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=80.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.... .. .+.....+++++++.||+
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~g~~~~~~l~ell~~aDv 226 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVE-RA-------------------LGLQRVSTLQDLLFHSDC 226 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHH-HH-------------------HTCEECSSHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchhhH-hh-------------------cCCeecCCHHHHHhcCCE
Confidence 5899999999999999999887 9999999987542111 10 023445578888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 227 V~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 276 (347)
T 1mx3_A 227 VTLHCGLNEHNHH-----LIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 276 (347)
T ss_dssp EEECCCCCTTCTT-----SBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHHHH-----HhH--------HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence 9999985322111 111 3455678999999999999888888888888764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=99.30 Aligned_cols=117 Identities=25% Similarity=0.365 Sum_probs=79.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++.+... +..........++.. ++. +++++|
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~--g~~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~i~~-~d~-~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVDKKRAEGDALD--------LIHGTPFTRRANIYA-GDY-ADLKGS 68 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSCCCEEEE-CCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHHH--------HHhhhhhcCCcEEEe-CCH-HHhCCC
Confidence 7999999999999999999998 88 999999999888765421 000000000123554 465 458999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||+|+|++.... ....|+ ..++++++.|.++. ++.+|++ .|.|.++...
T Consensus 69 DvViiav~~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~-~tNp~~~~~~ 124 (319)
T 1a5z_A 69 DVVIVAAGVPQKPG----ETRLQLLGRNARVMKEIARNVSKYA-PDSIVIV-VTNPVDVLTY 124 (319)
T ss_dssp SEEEECCCCCCCSS----CCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHHH
T ss_pred CEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-eCCcHHHHHH
Confidence 99999999875321 012232 33577888888875 4565554 5778877543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=100.12 Aligned_cols=115 Identities=17% Similarity=0.314 Sum_probs=74.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|||+|||+|++|.++|..|+.+ |+ +|.++|+++++++. +.... ++. ...+++.+..++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~~~~~~g~~~dl~~~~-~~~-------------~~~~i~~~~~~a 71 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFKEKAIGEAMDINHGL-PFM-------------GQMSLYAGDYSD 71 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC---CCHHHHHHTTSC-CCT-------------TCEEEC--CGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChHHHHHHHHHHHHhH-Hhc-------------CCeEEEECCHHH
Confidence 6899999999999999999987 66 99999999876543 22211 111 123333222456
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++||+||+++++|.... .++ ..+...++++.+.+.++. ++.+|++ .|.|+++...+
T Consensus 72 ~~~aDvVii~~g~p~k~g---~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~~~~ 132 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKPG---ETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV-VSNPVDIITYM 132 (318)
T ss_dssp GTTCSEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE-CSSSHHHHHHH
T ss_pred hCCCCEEEEcCCCCCCCC---cCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHHH
Confidence 999999999999886431 010 123445678888888885 5666666 68999986554
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-08 Score=102.42 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||++++. . .......+++++++.||+
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~------~------------------~~~~~~~sl~ell~~aDv 225 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAF--GMSVRYWNRSTLS------G------------------VDWIAHQSPVDLARDSDV 225 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCT------T------------------SCCEECSSHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCccc------c------------------cCceecCCHHHHHhcCCE
Confidence 6899999999999999999887 9999999997643 0 013445688898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.... +..+. -+...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 226 Vil~vP~t~~-----------t~~li--~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 275 (340)
T 4dgs_A 226 LAVCVAASAA-----------TQNIV--DASLLQALGPEGIVVNVARGNVVDEDALIEALKSG 275 (340)
T ss_dssp EEECC-----------------------CHHHHHHTTTTCEEEECSCC--------------C
T ss_pred EEEeCCCCHH-----------HHHHh--hHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 9999984221 11111 24566778999999999888766666677777653
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-09 Score=106.55 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=78.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++...+.+ .......+++++++.||+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv 197 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHF--GMKVLGVSRSGRERAGF---------------------DQVYQLPALNKMLAQADV 197 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCCTTC---------------------SEEECGGGHHHHHHTCSE
T ss_pred ceEEEEEECHHHHHHHHHHHhC--CCEEEEEcCChHHhhhh---------------------hcccccCCHHHHHhhCCE
Confidence 5899999999999999999987 99999999975211100 111224578888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++|+|......+ -.+ +.....++++.++|+.|+.++-..+.+.+.|++..
T Consensus 198 V~l~lPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 248 (324)
T 3hg7_A 198 IVSVLPATRETHH-----LFT--------ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGK 248 (324)
T ss_dssp EEECCCCCSSSTT-----SBC--------TTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred EEEeCCCCHHHHH-----HhH--------HHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCC
Confidence 9999985322211 111 23456689999999999888877788888887643
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-08 Score=99.43 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=78.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++......... +... .++++.++.||+
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~--------------------g~~~-~~l~ell~~aDv 233 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGF--RARIRVFDPWLPRSMLEEN--------------------GVEP-ASLEDVLTKSDF 233 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTS--CCEEEEECSSSCHHHHHHT--------------------TCEE-CCHHHHHHSCSE
T ss_pred CEEEEecCCcccHHHHHhhhhC--CCEEEEECCCCCHHHHhhc--------------------Ceee-CCHHHHHhcCCE
Confidence 5899999999999999998876 9999999997533221111 1233 478888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+. -+...+.++++.++|+.|..++-..+.+.+.|++.
T Consensus 234 V~l~~Plt~~T-----------~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 283 (365)
T 4hy3_A 234 IFVVAAVTSEN-----------KRFL--GAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSG 283 (365)
T ss_dssp EEECSCSSCC--------------CC--CHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT
T ss_pred EEEcCcCCHHH-----------Hhhc--CHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcC
Confidence 99999853221 1111 13456779999999999988777777788888764
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-08 Score=105.63 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=78.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||.++|..|... |++|++||++......... ++..+ +++++++.||+
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~--------------------g~~~~-~l~e~~~~aDv 199 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQL--------------------GIELL-SLDDLLARADF 199 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHHH--------------------TCEEC-CHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEECCCCChhHHHhc--------------------CcEEc-CHHHHHhcCCE
Confidence 6899999999999999999987 9999999997643211111 12333 78888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ...+ +.+.+.++++++|++.|+..+-..+.+.+.+++.
T Consensus 200 V~l~~P~~~~t--------------~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g 249 (529)
T 1ygy_A 200 ISVHLPKTPET--------------AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG 249 (529)
T ss_dssp EEECCCCSTTT--------------TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred EEECCCCchHH--------------HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcC
Confidence 99999854211 1112 2356778999999999988887777787777653
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=100.73 Aligned_cols=108 Identities=8% Similarity=0.074 Sum_probs=79.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+++...+.... .+.... +++++++.||+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~-~l~ell~~aDv 203 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGW--GATLQYHEAKALDTQTEQR-------------------LGLRQV-ACSELFASSDF 203 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTS--CCEEEEECSSCCCHHHHHH-------------------HTEEEC-CHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCCCcHhHHHh-------------------cCceeC-CHHHHHhhCCE
Confidence 5899999999999999998876 9999999998633222211 023333 78888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ .. -+...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 204 V~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 253 (330)
T 4e5n_A 204 ILLALPLNADTLH-----LV--------NAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253 (330)
T ss_dssp EEECCCCSTTTTT-----CB--------CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 9999985322111 11 23466789999999999988777777788888764
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.9e-09 Score=104.38 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=79.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||+++...+...+ .++....++++.++.||+
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~~~~~-------------------~G~~~~~~l~ell~~aDv 250 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV 250 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred CEEEEEeECHHHHHHHHHHHhC--CCEEEEEcCCccchhhHhh-------------------cCceecCCHHHHHhcCCE
Confidence 5899999999999999999887 9999999997543322221 023444678888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ -.+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus 251 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 300 (393)
T 2nac_A 251 VTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRDAVARALESG 300 (393)
T ss_dssp EEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEecCCchHHHH-----Hhh--------HHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence 9999985322100 111 3455778999999999987766667788888764
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-08 Score=97.98 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=79.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.. ..... +... .+++++++.||+
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~-~~~~~-------------------g~~~-~~l~ell~~aDv 222 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSF--GMKTIGYDPIISPE-VSASF-------------------GVQQ-LPLEEIWPLCDF 222 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSCHH-HHHHT-------------------TCEE-CCHHHHGGGCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchh-hhhhc-------------------Ccee-CCHHHHHhcCCE
Confidence 5899999999999999999876 99999999986552 22210 1232 378888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.+++.
T Consensus 223 V~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g 272 (335)
T 2g76_A 223 ITVHTPLLPSTTG-----LLN--------DNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 272 (335)
T ss_dssp EEECCCCCTTTTT-----SBC--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEecCCCHHHHH-----hhC--------HHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC
Confidence 9999986432110 111 3456789999999999988776677787777764
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=103.44 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++.. . .+......+++++++.||+
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~yd~~~~~---------~--------------~~~~~~~~sl~ell~~aDv 211 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESL--GMTVRYYDTSDKL---------Q--------------YGNVKPAASLDELLKTSDV 211 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCCC---------C--------------BTTBEECSSHHHHHHHCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCcchh---------c--------------ccCcEecCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999986321 0 0123456788999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ -.+ +.....++++.++|+.|+.++-..+.+.+.|++.
T Consensus 212 V~lhvPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g 261 (416)
T 3k5p_A 212 VSLHVPSSKSTSK-----LIT--------EAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG 261 (416)
T ss_dssp EEECCCC-----C-----CBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred EEEeCCCCHHHhh-----hcC--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence 9999985322110 111 2345678999999999998877778888888764
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-08 Score=98.14 Aligned_cols=115 Identities=16% Similarity=0.291 Sum_probs=80.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-HhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-QCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.++|..|+.+ |+ +|++||+++++++..... +..... .....+++.++|+ +++++|
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~a~~~a 73 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAEGIPQGKALD--------ITHSMVMFGSTSKVIGTDDY-ADISGS 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCchHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence 6899999999999999999998 88 999999999887754210 000000 0113467888888 569999
Q ss_pred CEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+||+|++.|.... .. .. +...++++++.|.++.+ ++++++-| .|.+.
T Consensus 74 DiVi~avg~p~~~g---~~-r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~s-Np~~~ 126 (317)
T 2ewd_A 74 DVVIITASIPGRPK---DD-RSELLFGNARILDSVAEGVKKYCP-NAFVICIT-NPLDV 126 (317)
T ss_dssp SEEEECCCCSSCCS---SC-GGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECC-SSHHH
T ss_pred CEEEEeCCCCCCCC---Cc-HHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeC-ChHHH
Confidence 99999998876431 11 11 23446778888888865 77776543 45444
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-09 Score=105.66 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..+|..+... |++|++||++++..+.+. ......+++++++.||+
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~---------------------~~~~~~~l~ell~~aDi 196 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAW--GFPLRCWSRSRKSWPGVE---------------------SYVGREELRAFLNQTRV 196 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCCCCTTCE---------------------EEESHHHHHHHHHTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCchhhhhhh---------------------hhcccCCHHHHHhhCCE
Confidence 5899999999999999999887 999999999764211000 01112467888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|......+ -. -+...+.++++.++|+.|..+.-..+.+.+.|++.
T Consensus 197 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 246 (315)
T 3pp8_A 197 LINLLPNTAQTVG-----II--------NSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG 246 (315)
T ss_dssp EEECCCCCGGGTT-----CB--------SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCchhhhh-----hc--------cHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhC
Confidence 9999984322111 11 13456778999999999988877778888888764
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=101.61 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=79.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||+++.. . .+......++++.++.||+
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-----~------------------~~~~~~~~~l~ell~~aDv 200 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL-----P------------------LGNATQVQHLSDLLNMSDV 200 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC-----C------------------CTTCEECSCHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEEcCCchh-----c------------------cCCceecCCHHHHHhcCCE
Confidence 5899999999999999999887 9999999986421 0 0223455688898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus 201 V~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 250 (404)
T 1sc6_A 201 VSLHVPENPSTKN-----MMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK 250 (404)
T ss_dssp EEECCCSSTTTTT-----CBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred EEEccCCChHHHH-----Hhh--------HHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence 9999986422111 111 2345678999999999998777777788888764
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=100.56 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=80.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..+|..+... |++ |++||+++...+...+ .+.....++++.++.||
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~--G~~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aD 223 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPF--NPKELLYYDYQALPKDAEEK-------------------VGARRVENIEELVAQAD 223 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--CCSEEEEECSSCCCHHHHHH-------------------TTEEECSSHHHHHHTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEECCCccchhHHHh-------------------cCcEecCCHHHHHhcCC
Confidence 5899999999999999999887 897 9999987644333322 12444567888889999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
+|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 224 vV~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g 274 (364)
T 2j6i_A 224 IVTVNAPLHAGTKG-----LIN--------KELLSKFKKGAWLVNTARGAICVAEDVAAALESG 274 (364)
T ss_dssp EEEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEECCCCChHHHH-----HhC--------HHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 99999986322111 111 3455778999999999988777777788888764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=97.99 Aligned_cols=113 Identities=19% Similarity=0.384 Sum_probs=74.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcC---CCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSD---QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g---~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++..... ..++. ...+++. ++. +++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~-----------~~~~i~~-~~~-~a~ 65 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDEDRAQAEAEDIAHAAPVS-----------HGTRVWH-GGH-SEL 65 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHTTSCCTT-----------SCCEEEE-ECG-GGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCHHHHHHHHHhhhhhhhhc-----------CCeEEEE-CCH-HHh
Confidence 7999999999999999999998 88 999999999876643221 11110 0123443 465 469
Q ss_pred hcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
++||+||+|++.|.... .++ ..++..++++.+.+.++. ++.+|++ .|.|.++.
T Consensus 66 ~~aDvVIi~~~~~~~~g---~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~-~tNP~~~~ 122 (304)
T 2v6b_A 66 ADAQVVILTAGANQKPG---ESRLDLLEKNADIFRELVPQITRAA-PDAVLLV-TSNPVDLL 122 (304)
T ss_dssp TTCSEEEECC---------------CHHHHHHHHHHHHHHHHHHC-SSSEEEE-CSSSHHHH
T ss_pred CCCCEEEEcCCCCCCCC---CcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEE-ecCchHHH
Confidence 99999999998775320 000 124456678888888884 6676665 57777653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.4e-08 Score=93.64 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=78.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.++|..|+.+ |+ +|.+||+++++++..... +...... ....+++.++| .+++++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d-~~a~~~ 69 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGAD-YSLLKG 69 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHH--------HHHHHHTTTCCCEEEEESC-GGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECChHHHHHHHHH--------HHhhhhhcCCCCEEEEeCC-HHHhCC
Confidence 7999999999999999999988 77 999999999887632110 0000000 01235777788 667999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
||+||++.+.|... | .+ +. +.+.+++..+.|.++. ++.++++- |.|..+.-
T Consensus 70 aDiVViaag~~~kp-G--~~-R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivv-sNPvd~~t 125 (294)
T 1oju_A 70 SEIIVVTAGLARKP-G--MT-RLDLAHKNAGIIKDIAKKIVENA-PESKILVV-TNPMDVMT 125 (294)
T ss_dssp CSEEEECCCCCCCS-S--CC-HHHHHHHHHHHHHHHHHHHHTTS-TTCEEEEC-SSSHHHHH
T ss_pred CCEEEECCCCCCCC-C--Cc-HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-CCcchHHH
Confidence 99999999887543 1 11 12 2344566667777774 45665553 47877643
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=97.95 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++ +. +. ....++++.++.||+
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~dr~~~--~~---~~--------------------~~~~~l~ell~~aDv 177 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK--EG---PW--------------------RFTNSLEEALREARA 177 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC--CS---SS--------------------CCBSCSHHHHTTCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcc--cc---Cc--------------------ccCCCHHHHHhhCCE
Confidence 6899999999999999999987 999999999764 11 10 113466778899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|...... .+. -+...+.+++++++|+.|+.++-..+.+.+.+++.
T Consensus 178 V~l~~P~~~~t~-----------~~i--~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g 227 (303)
T 1qp8_A 178 AVCALPLNKHTR-----------GLV--KYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER 227 (303)
T ss_dssp EEECCCCSTTTT-----------TCB--CHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred EEEeCcCchHHH-----------HHh--CHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence 999998642211 111 12456789999999999988776677787777764
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-08 Score=97.38 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=79.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++. ... ....+. +++++++.||+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~--~~~--------------------~~~~~~-~l~ell~~aDv 203 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAM--GAKVIAYDVAYNP--EFE--------------------PFLTYT-DFDTVLKEADI 203 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCG--GGT--------------------TTCEEC-CHHHHHHHCSE
T ss_pred CeEEEEecCHHHHHHHHHHhhC--CCEEEEECCChhh--hhh--------------------cccccc-CHHHHHhcCCE
Confidence 5899999999999999999987 9999999998643 111 113333 78888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.|++..
T Consensus 204 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~ 254 (343)
T 2yq5_A 204 VSLHTPLFPSTEN-----MIG--------EKQLKEMKKSAYLINCARGELVDTGALIKALQDGE 254 (343)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred EEEcCCCCHHHHH-----Hhh--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCC
Confidence 9999985322211 111 23456789999999999888777788888887653
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-08 Score=101.42 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=117.4
Q ss_pred CceEEEECCChhHHHHHHHHHHc----CCCCeEEEEeCCH-HHHHHHH-cCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALK----CPSIEVAVVDISV-PRINAWN-SDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~----~~G~~V~~~D~~~-~~v~~l~-~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
|+||+|||+|.||.++|..|.+. +.|++|++.+++. ...+... .|.... .. .+.++++
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~--------------d~--ta~s~aE 117 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEE--------------SG--TLGDIWE 117 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTT--------------TT--CEEEHHH
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEe--------------cC--CCCCHHH
Confidence 47999999999999999999875 2368888665543 2233222 221100 00 1246788
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh---hcC-CCce
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH---NSR-GINF 150 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~---~~~-g~~~ 150 (480)
++++||+||+|||.. ...+++++|.++++++++|++.+ |.+-. .+++ ..+ +.++
T Consensus 118 Aa~~ADVVILaVP~~---------------~~~eVl~eI~p~LK~GaILs~Aa----Gf~I~---~le~~~i~~p~dv~V 175 (525)
T 3fr7_A 118 TVSGSDLVLLLISDA---------------AQADNYEKIFSHMKPNSILGLSH----GFLLG---HLQSAGLDFPKNISV 175 (525)
T ss_dssp HHHHCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEESS----SHHHH---HHHHTTCCCCTTSEE
T ss_pred HHhcCCEEEECCChH---------------HHHHHHHHHHHhcCCCCeEEEeC----CCCHH---HHhhhcccCCCCCcE
Confidence 899999999999831 22456778999999999976643 43211 1222 111 2232
Q ss_pred EEeeCCcccccCcccc-----c----cCCCC-eEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHH-H
Q 011650 151 QILSNPEFLAEGTAIN-----D----LFKPD-RVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLA-A 219 (480)
Q Consensus 151 ~v~~~Pe~~~~G~a~~-----~----~~~~~-~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~-~ 219 (480)
+..+|. .||..+. . +...+ -+-+..+. +.+..+.+..++..++. ..++.++...---..++ +
T Consensus 176 -VrVmPN--tPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~---tgea~e~alala~aiG~-~~vieTtf~eE~e~DLfge 248 (525)
T 3fr7_A 176 -IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATDVALGWSVALGS-PFTFATTLEQEYKSDIFGE 248 (525)
T ss_dssp -EEEEES--SCHHHHHHHHHHHTTSTTCSCCEEEEEEECS---SSCHHHHHHHHHHHTTC-SEEEECCHHHHHHHHHHHH
T ss_pred -EEEecC--CCchhHHHHHhcccccccCCccEEEEcCCCC---CHHHHHHHHHHHHHCCC-CeeeeeeeeeehhHhhhhh
Confidence 334553 2232210 0 11223 23232221 35688899999999874 33444443321112222 1
Q ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 011650 220 N-AFLAQRISSVNAMSALCEATGADVSQVSHAI 251 (480)
Q Consensus 220 N-~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~ 251 (480)
- .+....-+++.-++....+.|++++..+..+
T Consensus 249 qtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~ 281 (525)
T 3fr7_A 249 RGILLGAVHGIVEALFRRYTEQGMDEEMAYKNT 281 (525)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1334445676777777888899987766544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=9.7e-08 Score=94.71 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=79.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.+|.++|..|+.+ | .+|.++|+++++++..... +.... ......++++.+..+++++|
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~--~~~~ei~L~Di~~~~~~g~~~d--------l~~~~-~~~~~~~~v~~~~~~a~~~a 75 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ--SIVDELVIIDLDTEKVRGDVMD--------LKHAT-PYSPTTVRVKAGEYSDCHDA 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--CSCSEEEEECSCHHHHHHHHHH--------HHHHG-GGSSSCCEEEECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHhhhhhhh--------HHhhh-hhcCCCeEEEeCCHHHhCCC
Confidence 5899999999999999999987 6 5999999998776642210 00100 00111233333445679999
Q ss_pred CEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 80 NIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||++++.|... + .++ ..+...+++..+.|.++. ++.+|++ .|.|.++...
T Consensus 76 DvVvi~ag~~~~~-g--~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~t~ 131 (317)
T 3d0o_A 76 DLVVICAGAAQKP-G--ETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLV-ATNPVDILAY 131 (317)
T ss_dssp SEEEECCCCCCCT-T--CCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHHHH
T ss_pred CEEEECCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHH
Confidence 9999999988643 1 010 123356677777888874 5676666 6799888544
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=93.93 Aligned_cols=119 Identities=22% Similarity=0.294 Sum_probs=79.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..|+.+ |+ +|+++|+++++++.... .+...... ....+++.++|+ +++++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~--~~~~v~L~Di~~~~~~g~~~--------dl~~~~~~~~~~~~v~~t~d~-~a~~~ 75 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLK--ELGDVVLFDIAEGTPQGKGL--------DIAESSPVDGFDAKFTGANDY-AAIEG 75 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHH--------HHHHHHHHHTCCCCEEEESSG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCchhHHHHHH--------HHhchhhhcCCCCEEEEeCCH-HHHCC
Confidence 46999999999999999999998 77 99999999988753321 01111000 013467778887 56999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.+.|... | .+ +. +...+++..+.|.++. ++.++++ -|.|..+.-.
T Consensus 76 aDiVIiaag~p~k~-G--~~-R~dl~~~N~~i~~~i~~~i~~~~-p~a~iiv-vtNPvd~~t~ 132 (324)
T 3gvi_A 76 ADVVIVTAGVPRKP-G--MS-RDDLLGINLKVMEQVGAGIKKYA-PEAFVIC-ITNPLDAMVW 132 (324)
T ss_dssp CSEEEECCSCCCC---------CHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CCSSHHHHHH
T ss_pred CCEEEEccCcCCCC-C--CC-HHHHHHhhHHHHHHHHHHHHHHC-CCeEEEe-cCCCcHHHHH
Confidence 99999999887644 1 11 22 3345666777777776 4555554 3467766443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-08 Score=97.29 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=74.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++..+ .. ..++++.++.||+
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~-------------------------~~-~~~l~ell~~aDv 196 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAF--GMRVVYHARTPKPLP-------------------------YP-FLSLEELLKEADV 196 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSSS-------------------------SC-BCCHHHHHHHCSE
T ss_pred CEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCcccc-------------------------cc-cCCHHHHHhhCCE
Confidence 5899999999999999999987 999999999754321 01 2467778899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILM 142 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~ 142 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+..+-..+.+.+.++
T Consensus 197 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 197 VSLHTPLTPETHR-----LLN--------RERLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp EEECCCCCTTTTT-----CBC--------HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred EEEeCCCChHHHh-----hcC--------HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 9999986422100 111 23456789999999999877666677777776
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.4e-08 Score=95.70 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=77.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~ 74 (480)
|||+|||+|+||.++|..|+.+ |+ +|+++|+++++++. |+.+ .++.. .++++ +++. +
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~------------~~v~i~~~~~-~ 69 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ--GITDELVVIDVNKEKAMGDVMDLNHG-KAFAP------------QPVKTSYGTY-E 69 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHT-GGGSS------------SCCEEEEECG-G
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHHHHHhc-ccccc------------CCeEEEeCcH-H
Confidence 6999999999999999999988 66 99999999998876 5544 33321 12233 4455 4
Q ss_pred HhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 75 HVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 75 a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++||+||+|.++|.... ..+.| .+.+++..+.+.++.+ +.+|++ -|.|..+...
T Consensus 70 a~~~aDvVvi~ag~p~kpG----~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlv-vtNPvd~~t~ 130 (326)
T 3pqe_A 70 DCKDADIVCICAGANQKPG----ETRLELVEKNLKIFKGIVSEVMASGF-DGIFLV-ATNPVDILTY 130 (326)
T ss_dssp GGTTCSEEEECCSCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred HhCCCCEEEEecccCCCCC----ccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEE-cCChHHHHHH
Confidence 6999999999999886541 11223 2445666677777655 555544 4577776433
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-08 Score=97.40 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=78.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.. +.+. ..+.+++++.++.||+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~~--------------------~~~~~~l~ell~~aDv 202 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPE--LEKK--------------------GYYVDSLDDLYKQADV 202 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHH--HHHT--------------------TCBCSCHHHHHHHCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcchh--HHhh--------------------CeecCCHHHHHhhCCE
Confidence 5899999999999999999987 99999999987653 2211 1123467788899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus 203 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 252 (333)
T 1j4a_A 203 ISLHVPDVPANVH-----MIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252 (333)
T ss_dssp EEECSCCCGGGTT-----CBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEcCCCcHHHHH-----HHh--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 9999985322100 111 2345678999999999988777777888888764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=81.01 Aligned_cols=125 Identities=13% Similarity=0.229 Sum_probs=76.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEEecCH---HH-Hh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFFSTDV---EK-HV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~-a~ 76 (480)
|+|+|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+. .......+ .++. .+ .+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~~~~~~~~d---------------~~~~~~l~~~~~ 67 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEIDALVINGD---------------CTKIKTLEDAGI 67 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCSSEEEESC---------------TTSHHHHHHTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhcCcEEEEcC---------------CCCHHHHHHcCc
Confidence 7999999999999999999998 99999999999998887642 11110000 0111 11 15
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNP 156 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (480)
.++|+||+|+|.+. ....+..+++.+.++++|+. + ..++..+ .+++.+ .+ .+.+|
T Consensus 68 ~~~d~vi~~~~~~~---------------~~~~~~~~~~~~~~~~ii~~-~-~~~~~~~----~l~~~g--~~--~v~~p 122 (140)
T 1lss_A 68 EDADMYIAVTGKEE---------------VNLMSSLLAKSYGINKTIAR-I-SEIEYKD----VFERLG--VD--VVVSP 122 (140)
T ss_dssp TTCSEEEECCSCHH---------------HHHHHHHHHHHTTCCCEEEE-C-SSTTHHH----HHHHTT--CS--EEECH
T ss_pred ccCCEEEEeeCCch---------------HHHHHHHHHHHcCCCEEEEE-e-cCHhHHH----HHHHcC--CC--EEECH
Confidence 68999999987421 12233344555666676653 2 2334332 334432 33 35778
Q ss_pred cccccCcccccc
Q 011650 157 EFLAEGTAINDL 168 (480)
Q Consensus 157 e~~~~G~a~~~~ 168 (480)
++...+.....+
T Consensus 123 ~~~~~~~~~~~~ 134 (140)
T 1lss_A 123 ELIAANYIEKLI 134 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 776554443333
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-08 Score=98.86 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=77.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|+|+|||+|.||..++..|++..+..+|.+||+++++.+++.+.. ..++..+++++++++++|+
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------------~~~~~~~~~~~e~v~~aDi 199 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------------QGEVRVCSSVQEAVAGADV 199 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------------SSCCEECSSHHHHHTTCSE
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------------hCCeEEeCCHHHHHhcCCE
Confidence 689999999999999999987521249999999999988876421 0025567889888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|.. .. - +.. +.++++++|++.|+..|.. +++.+.+.+.
T Consensus 200 Vi~atp~~-~~-------v---------~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~ 242 (312)
T 2i99_A 200 IITVTLAT-EP-------I---------LFG--EWVKPGAHINAVGASRPDW-RELDDELMKE 242 (312)
T ss_dssp EEECCCCS-SC-------C---------BCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHH
T ss_pred EEEEeCCC-Cc-------c---------cCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhc
Confidence 99998742 11 0 111 4678899999888887776 4444444433
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=93.43 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=81.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..++.+ |+ +|.++|+++++++..... +..........++..++|+++ +++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~--g~~~ev~L~Di~~~~~~g~a~D--------L~~~~~~~~~~~i~~t~d~~~-~~d 89 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMK--DLADEVALVDVMEDKLKGEMMD--------LEHGSLFLHTAKIVSGKDYSV-SAG 89 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHH--CCCSEEEEECSCHHHHHHHHHH--------HHHHGGGSCCSEEEEESSSCS-CSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHH--------hhhhhhcccCCeEEEcCCHHH-hCC
Confidence 37999999999999999999988 65 999999999887653320 000000001245777889876 999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.+.|..+ |.+ +.| .+.+++..+.+.++. ++.++++ -|.|..+.-.
T Consensus 90 aDiVIitaG~p~kp---G~t-R~dll~~N~~I~k~i~~~I~k~~-P~a~ilv-vtNPvdi~t~ 146 (330)
T 3ldh_A 90 SKLVVITAGARQQE---GES-RLNLVQRNVNIFKFIIPNIVKHS-PDCLKEL-HPELGTDKNK 146 (330)
T ss_dssp CSEEEECCSCCCCS---SCC-TTGGGHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHHH
T ss_pred CCEEEEeCCCCCCC---CCC-HHHHHHhhHHHHHHHHHHHHhhC-CCceEEe-CCCccHHHHH
Confidence 99999999988654 112 223 345667777888884 5565554 3577766443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-07 Score=92.88 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=77.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+|||+|||+ |++|.++|..++..+...+|.++|+++++++. |+.+. + ...++++++|+.++
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--~------------~~~~i~~t~d~~~a 73 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--F------------EGLNLTFTSDIKEA 73 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--C------------TTCCCEEESCHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--C------------CCCceEEcCCHHHH
Confidence 369999997 99999999999987222599999999987765 33321 1 01357788999888
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++||+||+|..+|.... ..+.| ...+++..+.+.++.+...+|++ -|.|..+.-.+
T Consensus 74 l~dADvVvitaG~p~kpG----~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlv-vsNPvd~~t~i 135 (343)
T 3fi9_A 74 LTDAKYIVSSGGAPRKEG----MTREDLLKGNAEIAAQLGKDIKSYCPDCKHVII-IFNPADITGLV 135 (343)
T ss_dssp HTTEEEEEECCC-----------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEE-CSSSHHHHHHH
T ss_pred hCCCCEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE-ecCchHHHHHH
Confidence 999999999998875431 11223 24455666677777655542333 36787765443
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.2e-07 Score=89.18 Aligned_cols=118 Identities=25% Similarity=0.329 Sum_probs=78.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC--HHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS--VPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~--~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~ 77 (480)
+||+|||+|.||.++|..|+.+ |+ +|+++|++ +++.+..... +....... ...+++.+++++ +++
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~~~~~~~~g~a~d--------l~~~~~~~~~~~~i~~t~d~~-a~~ 77 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIPQLENPTKGKALD--------MLEASPVQGFDANIIGTSDYA-DTA 77 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCGGGHHHHHHHHHH--------HHHHHHHHTCCCCEEEESCGG-GGT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeccchHHHHHHhhhh--------HHHhhhhccCCCEEEEcCCHH-HhC
Confidence 4899999999999999999998 88 99999999 5555543310 11110001 235677788865 599
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+||+|.++|..+. .+ +.| ...+++..+.+.++.+ +.++++ -|.|..+.-.
T Consensus 78 ~aDvVIiaag~p~kpg---~~-R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlv-vsNPvd~~t~ 135 (315)
T 3tl2_A 78 DSDVVVITAGIARKPG---MS-RDDLVATNSKIMKSITRDIAKHSP-NAIIVV-LTNPVDAMTY 135 (315)
T ss_dssp TCSEEEECCSCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHCT-TCEEEE-CCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-CCChHHHHHH
Confidence 9999999999886541 11 222 2345666677777754 555544 3467666443
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-07 Score=89.33 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=80.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHH--HHHcCCCCCCCCChHHHHHHhcCCCEEE---ecCHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPS--IEVAVVDISVPRIN--AWNSDQLPIYEPGLEEVVKQCRGKNLFF---STDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~--~l~~g~~~~~e~~l~~~~~~~~~~~l~~---t~d~~ 73 (480)
|||+|||+ |++|.+++..|+.. | ++|.++|+++.... .+.... ...+++. ++|++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~--~~~~ev~L~Di~~~~~~a~dL~~~~---------------~~~~l~~~~~t~d~~ 63 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYDIAHTPGVAADLSHIE---------------TRATVKGYLGPEQLP 63 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEESSSHHHHHHHHTTSS---------------SSCEEEEEESGGGHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEeCCccHHHHHHHhccC---------------cCceEEEecCCCCHH
Confidence 79999998 99999999999987 6 79999999872221 222211 0124565 36888
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++++||+||++.+.|.... ..+.|+ ..++++.+.+.++.+ +.+|++ .|.|.++...+
T Consensus 64 ~a~~~aDvVvi~ag~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv-~sNPv~~~~~i 126 (314)
T 1mld_A 64 DCLKGCDVVVIPAGVPRKPG----MTRDDLFNTNATIVATLTAACAQHCP-DAMICI-ISNPVNSTIPI 126 (314)
T ss_dssp HHHTTCSEEEECCSCCCCTT----CCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSCHHHHHHH
T ss_pred HHhCCCCEEEECCCcCCCCC----CcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE-ECCCcchhHHH
Confidence 88999999999998876431 123455 677888888888775 445544 47898876543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-07 Score=88.99 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=79.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..|+.+ |+ +|.++|+++++++..... +...... ....+++.++++ +++++
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~--~~~~v~l~Di~~~~~~g~a~d--------L~~~~~~~~~~~~v~~t~d~-~a~~~ 73 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIK--QLGDVVLFDIAQGMPNGKALD--------LLQTCPIEGVDFKVRGTNDY-KDLEN 73 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCChHHHHHHHHH--------HHhhhhhcCCCcEEEEcCCH-HHHCC
Confidence 37999999999999999999987 66 999999999876533210 0000000 012356667786 46999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.+.|... | .+ +. +...+++..+.|.++. ++.++++- |.|.++.-.
T Consensus 74 aDvVIi~ag~p~k~-G--~~-R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvd~~t~ 130 (321)
T 3p7m_A 74 SDVVIVTAGVPRKP-G--MS-RDDLLGINIKVMQTVGEGIKHNC-PNAFVICI-TNPLDIMVN 130 (321)
T ss_dssp CSEEEECCSCCCCT-T--CC-HHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHH
T ss_pred CCEEEEcCCcCCCC-C--CC-HHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEe-cCchHHHHH
Confidence 99999999887543 1 11 11 3355667777778877 45555543 678776543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.4e-07 Score=90.31 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=77.5
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCC--CeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHhcCCCEEE---ecCH
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPS--IEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQCRGKNLFF---STDV 72 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G--~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~---t~d~ 72 (480)
+|||+|+| +|++|.+++..|+.+ | ++|+++|++++. +..+..... ...++. ++|+
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~--g~~~ev~l~Di~~~~~~~~dL~~~~~---------------~~~v~~~~~t~d~ 70 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMN--PLVSVLHLYDVVNAPGVTADISHMDT---------------GAVVRGFLGQQQL 70 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHC--TTEEEEEEEESSSHHHHHHHHHTSCS---------------SCEEEEEESHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEeCCCcHhHHHHhhcccc---------------cceEEEEeCCCCH
Confidence 37999999 899999999999987 7 899999998762 222332110 113444 5578
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++++++||+||+|.+.|.... ....|+ ..+++..+.+.++. ++.+|++ +|.|.+++-.
T Consensus 71 ~~al~gaDvVi~~ag~~~~~g----~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv-~SNPv~~~~~ 133 (326)
T 1smk_A 71 EAALTGMDLIIVPAGVPRKPG----MTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNL-ISNPVNSTVP 133 (326)
T ss_dssp HHHHTTCSEEEECCCCCCCSS----CCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEE-CCSSHHHHHH
T ss_pred HHHcCCCCEEEEcCCcCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-ECCchHHHHH
Confidence 888999999999998875431 112344 45566666666665 4555555 6899988543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-07 Score=94.65 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=77.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.. + . ....+ .++++.++.||+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~-~-------------------~~~~~-~~l~ell~~aDv 200 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMKG--D-H-------------------PDFDY-VSLEDLFKQSDV 200 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSS--C-C-------------------TTCEE-CCHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCcchh--h-H-------------------hcccc-CCHHHHHhcCCE
Confidence 5899999999999999999987 99999999975421 1 0 01223 378888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 201 V~~~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g 250 (333)
T 1dxy_A 201 IDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 250 (333)
T ss_dssp EEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred EEEcCCCchhHHH-----HhC--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 9999986432111 111 3355678999999999998777778888888764
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=95.38 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=77.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++.+..+ . + . ...+++++++.||+
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~----~------------------~-~-~~~sl~ell~~aDi 173 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEAL--GIRTLLCDPPRAARG----D------------------E-G-DFRTLDELVQEADV 173 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHTT----C------------------C-S-CBCCHHHHHHHCSE
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCChHHhc----c------------------C-c-ccCCHHHHHhhCCE
Confidence 5899999999999999999987 999999997543210 0 0 1 13578888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|..... ..+ ...+. -+.....+++++++|+.|+.++-..+.+.+.|++.
T Consensus 174 V~l~~Plt~~g------~~~-T~~li--~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 227 (381)
T 3oet_A 174 LTFHTPLYKDG------PYK-TLHLA--DETLIRRLKPGAILINACRGPVVDNAALLARLNAG 227 (381)
T ss_dssp EEECCCCCCSS------TTC-CTTSB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCcCCccc------ccc-chhhc--CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999853220 000 11111 12355678999999999998887778888888764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-07 Score=89.35 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=73.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.++|..|+.+ |. +|+++|+++++++.... ++....... ...++..+++. +++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~--------DL~~~~~~~~~~~~v~~~~~~-~a~~~ 69 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ--DVAKEVVMVDIKDGMPQGKAL--------DMRESSPIHGFDTRVTGTNDY-GPTED 69 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSSEEEEECSSTTHHHHHHH--------HHHHHHHHHTCCCEEEEESSS-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCchHHHHHHHH--------HHhccccccCCCcEEEECCCH-HHhCC
Confidence 8999999999999999999987 65 99999999987654321 011110000 11234445554 56999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||+|.+.|..+ +.+ +.| ...+++..+.|.++. ++.++++ -|.|..+.-.
T Consensus 70 aDvVii~ag~~~kp---G~~-R~dl~~~N~~i~~~i~~~i~~~~-p~a~viv-vtNPvd~~t~ 126 (314)
T 3nep_X 70 SDVCIITAGLPRSP---GMS-RDDLLAKNTEIVGGVTEQFVEGS-PDSTIIV-VANPLDVMTY 126 (314)
T ss_dssp CSEEEECCCC-----------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEE-CCSSHHHHHH
T ss_pred CCEEEECCCCCCCC---CCC-HHHHHHhhHHHHHHHHHHHHHhC-CCcEEEe-cCCchhHHHH
Confidence 99999999887543 111 222 344566666777765 4555544 3577776544
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.3e-07 Score=87.96 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=74.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.+|.+++..|+.+ +. ++.++|+++++++..... +.... .....+++.+..+++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~~~d-----------l~~~~~~~~~~~v~~~~~~a~~~ 72 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ--GIAEEFVIVDVVKDRTKGDALD-----------LEDAQAFTAPKKIYSGEYSDCKD 72 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH-----------HHGGGGGSCCCEEEECCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHHHHHHHH-----------HHHHHHhcCCeEEEECCHHHhCC
Confidence 7999999999999999999987 55 899999999887643220 00000 00233444444567999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||++.+.|... | .+ +.|+ ..+++..+.+.++. ++.+|++ -|.|.++...
T Consensus 73 aDvVii~ag~~~~~-g--~~-R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNPv~~~t~ 129 (318)
T 1ez4_A 73 ADLVVITAGAPQKP-G--ES-RLDLVNKNLNILSSIVKPVVDSG-FDGIFLV-AANPVDILTY 129 (318)
T ss_dssp CSEEEECCCC--------------CHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHHHH
T ss_pred CCEEEECCCCCCCC-C--CC-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-eCCcHHHHHH
Confidence 99999999887543 1 11 2233 55667777777775 4555555 3788887544
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=93.82 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=77.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|++||++++.. +.+ ...+ .++++.++.||+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~--------------------~~~~-~~l~ell~~aDv 201 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGM--GATVIGEDVFEIKG--IED--------------------YCTQ-VSLDEVLEKSDI 201 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCS--CTT--------------------TCEE-CCHHHHHHHCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCccHH--HHh--------------------cccc-CCHHHHHhhCCE
Confidence 5899999999999999999987 99999999975421 100 1222 378888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|......+ -.+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus 202 V~~~~p~t~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g 251 (331)
T 1xdw_A 202 ITIHAPYIKENGA-----VVT--------RDFLKKMKDGAILVNCARGQLVDTEAVIEAVESG 251 (331)
T ss_dssp EEECCCCCTTTCC-----SBC--------HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEEecCCchHHHH-----HhC--------HHHHhhCCCCcEEEECCCcccccHHHHHHHHHhC
Confidence 9999985322111 111 2345678999999999988777777888888764
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=94.66 Aligned_cols=108 Identities=18% Similarity=0.153 Sum_probs=77.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.||..+|..+... |++|++||++++.. ..+ .. ..++++.++.||+
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~---~~g--------------------~~-~~~l~ell~~aDv 170 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGL--GWKVLVCDPPRQAR---EPD--------------------GE-FVSLERLLAEADV 170 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHH---STT--------------------SC-CCCHHHHHHHCSE
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCChhhh---ccC--------------------cc-cCCHHHHHHhCCE
Confidence 5899999999999999999987 99999999865432 111 01 2467788899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++|+|..... ..+ +..+. -+...+.+++++++|+.|+.++-..+.+.+.+++.
T Consensus 171 V~l~~Plt~~g------~~~-T~~li--~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g 224 (380)
T 2o4c_A 171 ISLHTPLNRDG------EHP-TRHLL--DEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG 224 (380)
T ss_dssp EEECCCCCSSS------SSC-CTTSB--CHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEeccCcccc------ccc-hhhhc--CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999854320 000 11111 13456779999999999988777777788888764
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=86.33 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=75.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh--cCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC--RGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~--~~~~l~~t~d~~~a~~~ 78 (480)
+|||+|||+|.||.++|..++.+....+|+++|+++++.+....+ +.... .....+++++..+++++
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~d-----------l~~~~~~~~~~~~i~~~~~~al~~ 74 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD-----------FNHGKVFAPKPVDIWHGDYDDCRD 74 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-----------HHHHTTSSSSCCEEEECCGGGTTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhh-----------HHHHhhhcCCCeEEEcCcHHHhCC
Confidence 379999999999999999998872224899999998866543221 11110 01123333444556999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
||+||+|.|.|... + .. ..| .+.+.+..+.+.++. ++.++++ -|.|.+....
T Consensus 75 aDvViia~~~~~~~-g--~~-r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv-~tNPv~~~~~ 131 (316)
T 1ldn_A 75 ADLVVICAGANQKP-G--ET-RLDLVDKNIAIFRSIVESVMASG-FQGLFLV-ATNPVDILTY 131 (316)
T ss_dssp CSEEEECCSCCCCT-T--TC-SGGGHHHHHHHHHHHHHHHHHHT-CCSEEEE-CSSSHHHHHH
T ss_pred CCEEEEcCCCCCCC-C--CC-HHHHHHcChHHHHHHHHHHHHHC-CCCEEEE-eCCchHHHHH
Confidence 99999999877543 1 11 222 244566667777776 4555554 4678776544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=86.43 Aligned_cols=96 Identities=13% Similarity=0.216 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
|||+|||+|.||..++..|.+. |++| .++|+++ +. .. .++|+++.+ .++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~--g~~lv~v~d~~~-~~------------------------~~--~~~~~~~l~~~~~ 51 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN--GFEIAAILDVRG-EH------------------------EK--MVRGIDEFLQREM 51 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSC-CC------------------------TT--EESSHHHHTTSCC
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEEEecCc-ch------------------------hh--hcCCHHHHhcCCC
Confidence 7999999999999999999875 8997 6899873 11 01 457888877 689
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccH---HHHHHHHHhh
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA---EAIEKILMHN 144 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~ 144 (480)
|+|++|+|+.. ..+.+...++.|+.|+++||...... +++.+..++.
T Consensus 52 DvVv~~~~~~~------------------~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~ 101 (236)
T 2dc1_A 52 DVAVEAASQQA------------------VKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKT 101 (236)
T ss_dssp SEEEECSCHHH------------------HHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHH
T ss_pred CEEEECCCHHH------------------HHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhc
Confidence 99999987421 12222344567888998887654433 4565555544
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-07 Score=91.85 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=57.8
Q ss_pred ceEEEECCChhH--HHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVG--GPTMAVIALK--CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G--~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.|| .++|..|+.. .+|++|++||+++++++.++.. ...++.. ....+++.++|+++++
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~--------~~~~l~~~~~~~~I~~ttD~~eal 75 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI 75 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHH--------HHHHhccCCCCcEEEEECCHHHHh
Confidence 699999999975 5556677642 1378999999999998875531 1122211 1235688899998889
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
++||+||+++|.
T Consensus 76 ~dAD~VIiaagv 87 (480)
T 1obb_A 76 IDADFVINTAMV 87 (480)
T ss_dssp TTCSEEEECCCT
T ss_pred CCCCEEEECCCc
Confidence 999999999975
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=90.70 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=59.3
Q ss_pred ceEEEECCChh-HHHHHHHHHHc--C-CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYV-GGPTMAVIALK--C-PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~--~-~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.+ |.++|..|+.+ . ++++|.+||+++++++.++.- .+.++.. ....+++.++|+++++
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~--------~~~~l~~~~~~~~I~~t~D~~eal 100 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGA--------CDVFIREKAPDIEFAATTDPEEAF 100 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHH--------HHHHHHHHCTTSEEEEESCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHH--------HHHHhccCCCCCEEEEECCHHHHH
Confidence 38999999999 55577777765 2 267999999999998876431 0111111 1234688889998889
Q ss_pred hcCCEEEEEccCCC
Q 011650 77 REANIVFVSVNTPT 90 (480)
Q Consensus 77 ~~aDvVii~Vptp~ 90 (480)
++||+||+++|++.
T Consensus 101 ~~AD~VViaag~~~ 114 (472)
T 1u8x_X 101 TDVDFVMAHIRVGK 114 (472)
T ss_dssp SSCSEEEECCCTTH
T ss_pred cCCCEEEEcCCCcc
Confidence 99999999998753
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=87.00 Aligned_cols=114 Identities=23% Similarity=0.333 Sum_probs=75.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHc---CCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNS---DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~---g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.+|.+++..|+.+ +. ++.++|+++++++.... ...++ ...++++.+..+++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~--~~~~el~L~Di~~~~~~g~~~dl~~~~~~-------------~~~~~i~~~~~~a~ 74 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLSNALPF-------------TSPKKIYSAEYSDA 74 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGG-------------SCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHhHHHHHHHHHHHHh-------------cCCeEEEECCHHHh
Confidence 7999999999999999999887 54 89999999988765322 11111 02334444445679
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++.+.|... | ..+.|+ ..+++..+.|.++. ++.+|++ -|.|.++...
T Consensus 75 ~~aDvVii~ag~~~k~-g---~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNPv~~~t~ 133 (326)
T 2zqz_A 75 KDADLVVITAGAPQKP-G---ETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLV-AANPVDILTY 133 (326)
T ss_dssp GGCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEE-CSSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-eCCcHHHHHH
Confidence 9999999999887543 1 011233 45666677777776 4555555 3788887544
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-06 Score=84.41 Aligned_cols=117 Identities=17% Similarity=0.275 Sum_probs=77.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc---CCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS---DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~---g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.+|.+++..|+.+....++.++|+++++++.... ...++. ..-+++. ++ .+++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~-----------~~~~v~~-~~-~~a~~~ 67 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFA-----------HPVWVWA-GS-YGDLEG 67 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGS-----------CCCEEEE-CC-GGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhc-----------CCeEEEE-CC-HHHhCC
Confidence 7999999999999999999987333699999999987764322 101110 0112333 34 556999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
||+||++.+.|... | . .+.| ...+++..+.+.++. ++.+|++ -|.|.++...+
T Consensus 68 aD~Vii~ag~~~~~-g--~-~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNPv~~~t~~ 125 (310)
T 2xxj_A 68 ARAVVLAAGVAQRP-G--E-TRLQLLDRNAQVFAQVVPRVLEAA-PEAVLLV-ATNPVDVMTQV 125 (310)
T ss_dssp EEEEEECCCCCCCT-T--C-CHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHHHH
T ss_pred CCEEEECCCCCCCC-C--c-CHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEE-ecCchHHHHHH
Confidence 99999999887543 1 0 1112 345666677777775 4555555 37888876543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=76.66 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=53.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|+|.|+|+|.+|..++..|.+. | ++|+++|+++++.+.+.......... .+.-..++.+++.++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~~~~~~~~~~~~~~~~~------------d~~~~~~~~~~~~~~ 70 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDLAALAVLNRMGVATKQV------------DAKDEAGLAKALGGF 70 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCHHHHHHHHTTTCEEEEC------------CTTCHHHHHHHTTTC
T ss_pred cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhCCCcEEEe------------cCCCHHHHHHHHcCC
Confidence 46899999999999999999998 8 99999999999988877322111000 000012344556789
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||.|+|.
T Consensus 71 d~vi~~~~~ 79 (118)
T 3ic5_A 71 DAVISAAPF 79 (118)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCCc
Confidence 999999863
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=87.16 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=56.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
|+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+. .++. .+|+++.++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~------------------~~~~-~~~~~~~l~~~ 62 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGN-ADARLVAVADAFPAAAEAIAGA------------------YGCE-VRTIDAIEAAA 62 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH------------------TTCE-ECCHHHHHHCT
T ss_pred ceEEEEECCCHHHHHHHHHHhhC-CCcEEEEEECCCHHHHHHHHHH------------------hCCC-cCCHHHHhcCC
Confidence 46899999999999999999875 578877 689999998877642 1234 678888877
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 63 ~~D~V~i~tp~~ 74 (331)
T 4hkt_A 63 DIDAVVICTPTD 74 (331)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCCch
Confidence 799999999864
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=87.77 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=57.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
|+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. + ....+|+++.++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~-----------------g-~~~~~~~~~~l~~~ 64 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAAN-PDLELVVIADPFIEGAQRLAEAN-----------------G-AEAVASPDEVFARD 64 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHTT-----------------T-CEEESSHHHHTTCS
T ss_pred ceEEEEECCcHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc-----------------C-CceeCCHHHHhcCC
Confidence 36899999999999999999875 578877 6899999988776521 2 466789999887
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 65 ~~D~V~i~tp~~ 76 (344)
T 3euw_A 65 DIDGIVIGSPTS 76 (344)
T ss_dssp CCCEEEECSCGG
T ss_pred CCCEEEEeCCch
Confidence 899999999864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=85.30 Aligned_cols=115 Identities=18% Similarity=0.261 Sum_probs=78.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcC---CCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSD---QLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g---~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.|||+|||+|.||.++|..|+.+ |+ +|.++|+++++++..... ..++. ....+..++|+++
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-----------~~~~i~~~~d~~~- 84 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMK--DLADELALVDVIEDKLKGEMMDLQHGSLFL-----------KTPKIVSSKDYSV- 84 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHHHHHTGGGC-----------SCCEEEECSSGGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEeCChHHHHHHHHhhhhhhhcc-----------CCCeEEEcCCHHH-
Confidence 37999999999999999999988 65 999999999877753321 00110 0124566788874
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+++||+||+|...|..+ |.+ +.|+ ..+++..+.|.++. ++.++++ -|.|..+.-
T Consensus 85 ~~~aDiVvi~aG~~~kp---G~t-R~dL~~~N~~I~~~i~~~i~~~~-p~a~vlv-vtNPvdi~t 143 (331)
T 4aj2_A 85 TANSKLVIITAGARQQE---GES-RLNLVQRNVNIFKFIIPNVVKYS-PQCKLLI-VSNPVDILT 143 (331)
T ss_dssp GTTEEEEEECCSCCCCT---TCC-GGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHH
T ss_pred hCCCCEEEEccCCCCCC---Ccc-HHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-ecChHHHHH
Confidence 99999999999877543 112 3343 44566667777774 4555544 357776543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-06 Score=88.24 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=56.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
||||+|||+|.||..++..|.+. ++++++ ++|+++++.+++.+.. +.....+|+++.++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~ 63 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMI-DDAILYAISDVREDRLREMKEKL-----------------GVEKAYKDPHELIEDP 63 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGS-TTEEEEEEECSCHHHHHHHHHHH-----------------TCSEEESSHHHHHHCT
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHh-----------------CCCceeCCHHHHhcCC
Confidence 46999999999999999998874 578876 6899999888766410 11246788988887
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 64 ~~D~V~i~tp~~ 75 (344)
T 3ezy_A 64 NVDAVLVCSSTN 75 (344)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEcCCCc
Confidence 799999998864
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.8e-06 Score=83.77 Aligned_cols=118 Identities=22% Similarity=0.262 Sum_probs=79.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-HhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-QCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (480)
||+|||+|.||.++|..++.+ ++ +|.++|+++++++..... +..... ....-+++.|+|+ +++++||
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~--~l~el~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~aD 69 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR--GYDDLLLIARTPGKPQGEALD--------LAHAAAELGVDIRISGSNSY-EDMRGSD 69 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred CEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCChhhHHHHHHH--------HHHhhhhcCCCeEEEECCCH-HHhCCCC
Confidence 799999999999999999987 66 799999998877643210 111100 0113457777887 5699999
Q ss_pred EEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||++.+.|... | ..+ .-+...+++..+.+.++. ++.++++- |.|.+....
T Consensus 70 ~Vi~~ag~~~k~-G--~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~ 124 (308)
T 2d4a_B 70 IVLVTAGIGRKP-G--MTREQLLEANANTMADLAEKIKAYA-KDAIVVIT-TNPVDAMTY 124 (308)
T ss_dssp EEEECCSCCCCS-S--CCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHH
T ss_pred EEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCchHHHHH
Confidence 999999887543 1 110 112334567777777776 55555553 678776544
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.9e-07 Score=87.95 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=54.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+++.+.. ++...+|+++.++++
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~------------------~~~~~~~~~~ll~~~ 67 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-ERFEFVGAFTPNKVKREKICSDY------------------RIMPFDSIESLAKKC 67 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-SSSEEEEEECSCHHHHHHHHHHH------------------TCCBCSCHHHHHTTC
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHHhcC
Confidence 58999999999996 78878764 578877 7999999988776420 122267888888899
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 68 D~V~i~tp~~ 77 (308)
T 3uuw_A 68 DCIFLHSSTE 77 (308)
T ss_dssp SEEEECCCGG
T ss_pred CEEEEeCCcH
Confidence 9999999864
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.8e-07 Score=85.63 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=70.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||.++|..|.+. |++|+++|+++++.+++.+.. ++.+.++++++++++|+
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~--g~~V~v~~r~~~~~~~l~~~~------------------g~~~~~~~~~~~~~aDi 189 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKE--GAKVFLWNRTKEKAIKLAQKF------------------PLEVVNSPEEVIDKVQV 189 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSHHHHHHHTTTS------------------CEEECSCGGGTGGGCSE
T ss_pred CEEEEECchHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHc------------------CCeeehhHHhhhcCCCE
Confidence 6899999999999999999998 889999999999988876421 24455577777889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||.|+|.+...+ ... .+ . .+.++++++|++.++
T Consensus 190 Vi~atp~~~~~~------~~~--~i----~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 190 IVNTTSVGLKDE------DPE--IF----N--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp EEECSSTTSSTT------CCC--SS----C--GGGCCTTSEEEESSS
T ss_pred EEEeCCCCCCCC------CCC--CC----C--HHHcCCCCEEEEcCC
Confidence 999998654210 000 01 0 245778999988776
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=85.66 Aligned_cols=113 Identities=24% Similarity=0.347 Sum_probs=72.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcC---CCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSD---QLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g---~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.||.++|..|+.+ |. ++.++|+++++++..... ..++ ....+++++..+++
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~-------------~~~~~i~~~~~~a~ 74 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDALPF-------------TSPKKIYSAEYSDA 74 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGG-------------SCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhhhhh-------------cCCcEEEECcHHHh
Confidence 7999999999999999999987 66 899999999887744321 1111 02334444444569
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
++||+||++.+.|..+ |.+ +.| ...+++..+.+.++.+ +.++++ -|.|..+..
T Consensus 75 ~~aDiVvi~ag~~~kp---G~t-R~dL~~~N~~I~~~i~~~i~~~~p-~a~ilv-vtNPvdi~t 132 (326)
T 3vku_A 75 KDADLVVITAGAPQKP---GET-RLDLVNKNLKILKSIVDPIVDSGF-NGIFLV-AANPVDILT 132 (326)
T ss_dssp TTCSEEEECCCCC--------------------CHHHHHHHHHTTTC-CSEEEE-CSSSHHHHH
T ss_pred cCCCEEEECCCCCCCC---Cch-HHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE-ccCchHHHH
Confidence 9999999999877543 111 222 2445677777777665 555544 357777543
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=83.87 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=71.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|||+|.||..+|..++.+ |+ +|.++|++++...... ++.. ....+++.++|+ +++++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~~~~g~a~------------dl~~-~~~~~i~~t~d~-~~l~~ 77 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSEGTKGATM------------DLEI-FNLPNVEISKDL-SASAH 77 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC-----CHH------------HHHH-HTCTTEEEESCG-GGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCcchHHHHH------------HHhh-hcCCCeEEeCCH-HHHCC
Confidence 57999999999999999999988 77 9999999985211110 1111 122368888898 56999
Q ss_pred CCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||+++..+ .. | .++ .-+...+++.++.+.++. ++.++++ -|.|...
T Consensus 78 aD~Vi~aag~~-~p-G--~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~sNP~~~ 130 (303)
T 2i6t_A 78 SKVVIFTVNSL-GS-S--QSYLDVVQSNVDMFRALVPALGHYS-QHSVLLV-ASQPVEI 130 (303)
T ss_dssp CSEEEECCCC--------CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEE-CSSSHHH
T ss_pred CCEEEEcCCCC-CC-C--CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-cCChHHH
Confidence 99999998654 11 1 010 112334567777888877 5666655 3556554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-07 Score=79.49 Aligned_cols=70 Identities=11% Similarity=0.304 Sum_probs=57.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|... |++|+++|+++++.+.+.+.. .......+++++++.++|+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~Di 83 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNIDHVRAFAEKY----------------EYEYVLINDIDSLIKNNDV 83 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCHHHHHHHHHHH----------------TCEEEECSCHHHHHHTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHHh----------------CCceEeecCHHHHhcCCCE
Confidence 5899999999999999999887 889999999999988765410 0123456788888899999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|.+
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99999865
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=87.34 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=56.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
++||+|||+|.||..++..|.+..++++++ ++|+++++.+++.+. -++...+|+++.++
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~ 74 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER------------------TGARGHASLTDMLAQT 74 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------HCCEEESCHHHHHHHC
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH------------------cCCceeCCHHHHhcCC
Confidence 368999999999999999998753477866 789999998876641 12467889999876
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 75 ~~D~V~i~tp~~ 86 (354)
T 3q2i_A 75 DADIVILTTPSG 86 (354)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEECCCcH
Confidence 799999999864
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=82.26 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=76.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..|+.+..-.++.++|+++++.+.... ++....... ...++..++|+++ +++||
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~--------DL~h~~~~~~~~~~i~~~~d~~~-~~~aD 71 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAM--------DLAHAAAGIDKYPKIVGGADYSL-LKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH--------HHHHHHGGGTCCCEEEEESCGGG-GTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhh--------hhhcccccCCCCCeEecCCCHHH-hCCCC
Confidence 8999999999999999999877223489999999876553221 011000000 1134566778765 99999
Q ss_pred EEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+|+++-..|..+ |.+ +.| .+.+++..+.|.++.+. .+|++ -|.|..+.-
T Consensus 72 vVvitAG~prkp---Gmt-R~dLl~~Na~I~~~i~~~i~~~~p~-aivlv-vsNPvd~~t 125 (294)
T 2x0j_A 72 IIVVTAGLARKP---GMT-RLDLAHKNAGIIKDIAKKIVENAPE-SKILV-VTNPMDVMT 125 (294)
T ss_dssp EEEECCCCCCCS---SSC-HHHHHHHHHHHHHHHHHHHHTTSTT-CEEEE-CSSSHHHHH
T ss_pred EEEEecCCCCCC---CCc-hHHHHHHHHHHHHHHHHHHHhcCCc-eEEEE-ecCcchhhH
Confidence 999998877644 111 222 34456666777777654 44433 467877643
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-06 Score=83.11 Aligned_cols=95 Identities=14% Similarity=0.233 Sum_probs=70.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |++|+++|+++++.+.+.+.. ....-..++++.+++||+
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~g-----------------~~~~~~~~l~~~l~~aDv 218 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEMG-----------------LVPFHTDELKEHVKDIDI 218 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT-----------------CEEEEGGGHHHHSTTCSE
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC-----------------CeEEchhhHHHHhhCCCE
Confidence 5899999999999999999987 899999999998776654310 011112467777899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|... .+ . .....++++.++++.+..+.++
T Consensus 219 Vi~~~p~~~----------i~----~----~~~~~mk~g~~lin~a~g~~~~ 252 (300)
T 2rir_A 219 CINTIPSMI----------LN----Q----TVLSSMTPKTLILDLASRPGGT 252 (300)
T ss_dssp EEECCSSCC----------BC----H----HHHTTSCTTCEEEECSSTTCSB
T ss_pred EEECCChhh----------hC----H----HHHHhCCCCCEEEEEeCCCCCc
Confidence 999998532 11 1 2345688999999988766655
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=76.18 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=69.3
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.||..++.+|.+. |++|+.++.+.+.+ .+..+..+++++..
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~--G~~V~~vnp~~~~i------------------------~G~~~~~s~~el~~ 68 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK 68 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC--CCEEEEeCCCCCeE------------------------CCeeecCCHHHhCC
Confidence 47999999 99999999999998 99866666542111 13566778888667
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
.+|++++|+|. ..+.++++++.+ ...+.+++..||. .+++.+..++.+
T Consensus 69 ~vDlvii~vp~---------------~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~G 116 (138)
T 1y81_A 69 DVDVIVFVVPP---------------KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAG 116 (138)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHT
T ss_pred CCCEEEEEeCH---------------HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCC
Confidence 89999999983 234666766665 4455677765553 466766666654
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-06 Score=85.10 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=56.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCC-CEEEecCHHHHhhc-
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGK-NLFFSTDVEKHVRE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||..++..|.++.++++++ ++|+++++.+++.+.. + .....+|+++.+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~ll~~~ 65 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-----------------QLNATVYPNDDSLLADE 65 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-----------------TCCCEEESSHHHHHHCT
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence 59999999999999999998333578876 6899999988776421 1 14567899998765
Q ss_pred -CCEEEEEccCC
Q 011650 79 -ANIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 66 ~~D~V~i~tp~~ 77 (344)
T 3mz0_A 66 NVDAVLVTSWGP 77 (344)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEECCCch
Confidence 89999999864
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.9e-06 Score=82.82 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=78.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeCC----HHHHHH----HHcCCCCCCCCChHHHHHHhcCCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDIS----VPRINA----WNSDQLPIYEPGLEEVVKQCRGKN 65 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~----~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~ 65 (480)
|||+|+|+ |.+|.+++..|+.+ |+ +|.++|++ +++.+. +.....++ .+.
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~--~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-------------~~~ 70 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG--DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-------------LAG 70 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-------------EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-------------cCc
Confidence 79999997 99999999999887 64 89999999 655543 33321111 135
Q ss_pred EEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCC----CCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 66 LFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 66 l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++.+++..+++++||+||++...|... + .++ ..+...+++.++.+.++..++..+++.| .|.++...
T Consensus 71 i~~~~~~~~al~~aD~Vi~~ag~~~~~-g--~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S-NPv~~~t~ 141 (329)
T 1b8p_A 71 MTAHADPMTAFKDADVALLVGARPRGP-G--MERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG-NPANTNAY 141 (329)
T ss_dssp EEEESSHHHHTTTCSEEEECCCCCCCT-T--CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHHHH
T ss_pred EEEecCcHHHhCCCCEEEEeCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc-CchHHHHH
Confidence 677889888899999999998766432 1 010 0122345566677777753455665544 78776544
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=81.85 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=69.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE--ecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF--STDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~~a 79 (480)
++|+|||+|.||..+|..+... |.+|+++|+++++.+.+.+- + ... ..++++.++++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g-~~~~~~~~l~~~l~~a 214 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIAEM------------------G-MEPFHISKAAQELRDV 214 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT------------------T-SEEEEGGGHHHHTTTC
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC------------------C-CeecChhhHHHHhcCC
Confidence 5899999999999999999987 89999999998876655431 1 111 24667778999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+|++|+|... .+ . .....++++.++++.+..+.++
T Consensus 215 DvVi~~~p~~~----------i~----~----~~l~~mk~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 215 DVCINTIPALV----------VT----A----NVLAEMPSHTFVIDLASKPGGT 250 (293)
T ss_dssp SEEEECCSSCC----------BC----H----HHHHHSCTTCEEEECSSTTCSB
T ss_pred CEEEECCChHH----------hC----H----HHHHhcCCCCEEEEecCCCCCC
Confidence 99999997532 11 1 1234578899999988766555
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=86.64 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=54.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh--hc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV--RE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~ 78 (480)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+.. ++...+|+++++ .+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~~l~~~~ 66 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-EKLKLVTCYSRTEDKREKFGKRY------------------NCAGDATMEALLARED 66 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEECSSHHHHHHHHHHH------------------TCCCCSSHHHHHHCSS
T ss_pred ceEEEEccCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHhcCCC
Confidence 4899999999999999998864 578865 7899999988765410 122367888877 56
Q ss_pred CCEEEEEccCCC
Q 011650 79 ANIVFVSVNTPT 90 (480)
Q Consensus 79 aDvVii~Vptp~ 90 (480)
+|+|++|+|+..
T Consensus 67 ~D~V~i~tp~~~ 78 (354)
T 3db2_A 67 VEMVIITVPNDK 78 (354)
T ss_dssp CCEEEECSCTTS
T ss_pred CCEEEEeCChHH
Confidence 899999998754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.9e-06 Score=73.22 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=36.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|+|+|.+|..+|..|.+. |++|+++|+++++++.++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~ 59 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLN 59 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence 6899999999999999999998 899999999998887665
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-06 Score=85.87 Aligned_cols=70 Identities=7% Similarity=0.088 Sum_probs=54.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+++.+.. +..+.++|+++.+. +
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~~ 67 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-AQAEVRGIASRRLENAQKMAKEL-----------------AIPVAYGSYEELCKDET 67 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-SSEEEEEEBCSSSHHHHHHHHHT-----------------TCCCCBSSHHHHHHCTT
T ss_pred EEEEEECchHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHc-----------------CCCceeCCHHHHhcCCC
Confidence 5899999999999999999885 477877 6799999888766421 11134678888776 7
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 68 ~D~V~i~tp~~ 78 (330)
T 3e9m_A 68 IDIIYIPTYNQ 78 (330)
T ss_dssp CSEEEECCCGG
T ss_pred CCEEEEcCCCH
Confidence 99999998864
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=84.00 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=52.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
|||+|||+|.||..++..|.+. +++++ .++|+++++.+.+.+. +...+|++++++ +
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-~~~~~v~v~d~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~ 69 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-PGAALVRLASSNPDNLALVPPG--------------------CVIESDWRSVVSAPE 69 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-TTEEEEEEEESCHHHHTTCCTT--------------------CEEESSTHHHHTCTT
T ss_pred ceEEEECCcHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHhh--------------------CcccCCHHHHhhCCC
Confidence 6899999999999999999875 46775 4899999876544321 345678888775 7
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 70 ~D~V~i~tp~~ 80 (315)
T 3c1a_A 70 VEAVIIATPPA 80 (315)
T ss_dssp CCEEEEESCGG
T ss_pred CCEEEEeCChH
Confidence 99999998853
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.8e-06 Score=71.83 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=39.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD 45 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g 45 (480)
|++|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~ 48 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE 48 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC
Confidence 45799999999999999999998 99999999999999988753
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-06 Score=83.35 Aligned_cols=108 Identities=10% Similarity=0.039 Sum_probs=76.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..++..|....+..+|++||+++++.+++.+..... ++ -.+..+++++++++++|+
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~--~g----------~~~~~~~~~~eav~~aDi 197 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY--SG----------LTIRRASSVAEAVKGVDI 197 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC--TT----------CEEEECSSHHHHHTTCSE
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc--cC----------ceEEEeCCHHHHHhcCCE
Confidence 589999999999999988865333579999999999998876421000 00 124567889998999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEK 139 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~ 139 (480)
|++|+|++... +-+ . ...+++|+.|+..+|..|+. +++.+
T Consensus 198 Vi~aTps~~~~--------pvl-------~--~~~l~~G~~V~~vgs~~p~~-~El~~ 237 (350)
T 1x7d_A 198 ITTVTADKAYA--------TII-------T--PDMLEPGMHLNAVGGDCPGK-TELHA 237 (350)
T ss_dssp EEECCCCSSEE--------EEE-------C--GGGCCTTCEEEECSCCBTTB-EEECH
T ss_pred EEEeccCCCCC--------cee-------c--HHHcCCCCEEEECCCCCCCc-eeeCH
Confidence 99999864211 101 0 14678999999999887774 33433
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-06 Score=82.83 Aligned_cols=103 Identities=19% Similarity=0.162 Sum_probs=72.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
+|+|||+|.||.++|..|.+. |++|+++|+++++.+.+.+.. + .. .++++++ +++|+|
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~--g~~v~v~~r~~~~~~~l~~~~-----------------~-~~-~~~~~~~-~~~Div 175 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREA--GLEVWVWNRTPQRALALAEEF-----------------G-LR-AVPLEKA-REARLL 175 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH-----------------T-CE-ECCGGGG-GGCSEE
T ss_pred eEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-----------------c-cc-hhhHhhc-cCCCEE
Confidence 699999999999999999998 889999999998887765310 1 12 3466776 899999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
|+|+|.+... +.. ..+. .+.++++++|++.++.+..+ + +.+..++
T Consensus 176 i~~tp~~~~~---------~~~---~~l~--~~~l~~g~~viD~~~~p~~t-~-l~~~a~~ 220 (263)
T 2d5c_A 176 VNATRVGLED---------PSA---SPLP--AELFPEEGAAVDLVYRPLWT-R-FLREAKA 220 (263)
T ss_dssp EECSSTTTTC---------TTC---CSSC--GGGSCSSSEEEESCCSSSSC-H-HHHHHHH
T ss_pred EEccCCCCCC---------CCC---CCCC--HHHcCCCCEEEEeecCCccc-H-HHHHHHH
Confidence 9999865321 100 0010 34578899998887765544 3 4444444
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.5e-06 Score=82.70 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=54.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
++||+|||+|.||..++..|..+.+++++ .++|+++++.+.+.+.. +...+.+|+++.++
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~ 70 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-----------------GVETTYTNYKDMIDTE 70 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-----------------CCSEEESCHHHHHTTS
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCC
Confidence 36899999999999999998822247775 57899999987765421 11145678888776
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 71 ~~D~V~i~tp~~ 82 (346)
T 3cea_A 71 NIDAIFIVAPTP 82 (346)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 699999998854
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-06 Score=86.56 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=59.1
Q ss_pred ceEEEECCChh-HHHHHHHHHH--cC-CCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHH
Q 011650 2 VKICCIGAGYV-GGPTMAVIAL--KC-PSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~--~~-~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~ 74 (480)
|||+|||+|.+ |.+++..|+. .. ++++|++||+++ ++++.++.- ...++.. ....+++.++|+++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~--------~~~~~~~~~~~~~i~~t~D~~e 79 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGAL--------AKRMVEKAGVPIEIHLTLDRRR 79 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHH--------HHHHHhhcCCCcEEEEeCCHHH
Confidence 69999999999 8888888886 21 257999999999 887774420 0111111 11345788899988
Q ss_pred HhhcCCEEEEEccCCC
Q 011650 75 HVREANIVFVSVNTPT 90 (480)
Q Consensus 75 a~~~aDvVii~Vptp~ 90 (480)
++++||+||+++|.+.
T Consensus 80 al~gAD~VVitagv~~ 95 (450)
T 1s6y_A 80 ALDGADFVTTQFRVGG 95 (450)
T ss_dssp HHTTCSEEEECCCTTH
T ss_pred HhCCCCEEEEcCCCCC
Confidence 8999999999998753
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.4e-06 Score=82.92 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=53.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|||+|.||..++..|.+. ++++|+ ++|+++++.+...+- ++...+|+++.++ +
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~a~~~-------------------g~~~~~~~~~ll~~~~ 65 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-DNLEVHGVFDILAEKREAAAQK-------------------GLKIYESYEAVLADEK 65 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-TTEEEEEEECSSHHHHHHHHTT-------------------TCCBCSCHHHHHHCTT
T ss_pred CcEEEECcCHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHhc-------------------CCceeCCHHHHhcCCC
Confidence 4799999999999999988765 578876 579999887654331 2345678888776 7
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 66 ~D~V~i~tp~~ 76 (359)
T 3e18_A 66 VDAVLIATPND 76 (359)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEEcCCcH
Confidence 89999998864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.8e-06 Score=71.52 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=52.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHH-Hhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEK-HVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (480)
++|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+++...... +....+.+ ++ .+.+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l--------------~~a~i~~ 71 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRERGVRAVLGNAANEEIM--------------QLAHLEC 71 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHH--------------HHTTGGG
T ss_pred CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHH--------------HhcCccc
Confidence 4799999999999999999998 9999999999999998876322211 11111111 11 1568
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|++|+|+|+
T Consensus 72 ad~vi~~~~~ 81 (140)
T 3fwz_A 72 AKWLILTIPN 81 (140)
T ss_dssp CSEEEECCSC
T ss_pred CCEEEEECCC
Confidence 9999999875
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-06 Score=83.12 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=54.1
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||||||+|.||.. ++..+... ++.+|+ ++|+++++.+++.+.. +-.++.+|+++.++
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~-~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~ell~~ 84 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDA-ENCVVTAIASRDLTRAREMADRF-----------------SVPHAFGSYEEMLAS 84 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHC-SSEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHHHHHHC
T ss_pred ccEEEEEcChHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc-----------------CCCeeeCCHHHHhcC
Confidence 689999999999975 45566654 577876 5899999988876520 11256789999775
Q ss_pred -cCCEEEEEccCCC
Q 011650 78 -EANIVFVSVNTPT 90 (480)
Q Consensus 78 -~aDvVii~Vptp~ 90 (480)
+.|+|+||+|+..
T Consensus 85 ~~iDaV~I~tP~~~ 98 (350)
T 4had_A 85 DVIDAVYIPLPTSQ 98 (350)
T ss_dssp SSCSEEEECSCGGG
T ss_pred CCCCEEEEeCCCch
Confidence 5799999998654
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.1e-06 Score=85.16 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=57.4
Q ss_pred ceEEEECCChh--HHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYV--GGPTMAVIALKC--PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~--G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|||+|||+|.| |..++..|+... .| +|++||+++++++.++.-...+.. ...++++|+|++++++
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~----------~~~~I~~TtD~~eAl~ 74 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGN----------GRWRYEAVSTLKKALS 74 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTT----------SCEEEEEESSHHHHHT
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhc----------cCCeEEEECCHHHHhc
Confidence 59999999996 678888888621 26 999999999888765531111111 1246889999999999
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
+||+||++++.
T Consensus 75 dADfVI~airv 85 (450)
T 3fef_A 75 AADIVIISILP 85 (450)
T ss_dssp TCSEEEECCCS
T ss_pred CCCEEEecccc
Confidence 99999999973
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.7e-06 Score=83.21 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=55.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCC-CEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGK-NLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~-~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||..++..|....++++|+ ++|+++++.+++.+.. + .....+|+++.++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~ll~~~ 86 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-----------------AIEAKDYNDYHDLINDK 86 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-----------------TCCCEEESSHHHHHHCT
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence 48999999999999999998433578876 6899999887766420 1 2456789998876
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 87 ~~D~V~i~tp~~ 98 (357)
T 3ec7_A 87 DVEVVIITASNE 98 (357)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEcCCcH
Confidence 589999999864
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.3e-06 Score=82.53 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=54.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc-
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||.. ++..|.+. ++.+|+ ++|+++++.+++.+.. +.....+|+++.+++
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 67 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-QDIRIVAACDSDLERARRVHRFI-----------------SDIPVLDNVPAMLNQV 67 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-TTEEEEEEECSSHHHHGGGGGTS-----------------CSCCEESSHHHHHHHS
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCC
Confidence 48999999999985 78888764 578876 7899999988776531 224567899988764
Q ss_pred -CCEEEEEccCC
Q 011650 79 -ANIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 68 ~vD~V~i~tp~~ 79 (359)
T 3m2t_A 68 PLDAVVMAGPPQ 79 (359)
T ss_dssp CCSEEEECSCHH
T ss_pred CCCEEEEcCCcH
Confidence 59999998853
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-06 Score=82.15 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=54.0
Q ss_pred ceEEEECCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||. .++..|.+. ++++|+ ++|+++++.+++.+. -++...+|+++.++
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~~ll~~~ 88 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-PLTEVTAIASRRWDRAKRFTER------------------FGGEPVEGYPALLERD 88 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-TTEEEEEEEESSHHHHHHHHHH------------------HCSEEEESHHHHHTCT
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-CCeEEEEEEcCCHHHHHHHHHH------------------cCCCCcCCHHHHhcCC
Confidence 5899999999998 788888875 578876 689999988876541 02344588888775
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 89 ~~D~V~i~tp~~ 100 (350)
T 3rc1_A 89 DVDAVYVPLPAV 100 (350)
T ss_dssp TCSEEEECCCGG
T ss_pred CCCEEEECCCcH
Confidence 589999998864
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-06 Score=75.37 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=67.4
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.+|+|||+ |.||..++.+|.+. |++|+.++.+. +.+ .++.+..++++.
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~--G~~v~~vnp~~~g~~i------------------------~G~~~~~sl~el 67 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ--GYHVIPVSPKVAGKTL------------------------LGQQGYATLADV 67 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH--TCCEEEECSSSTTSEE------------------------TTEECCSSTTTC
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC--CCEEEEeCCccccccc------------------------CCeeccCCHHHc
Confidence 47999999 89999999999998 89977666543 111 135566677775
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
...+|++++|+|.+ .+.++++++.+ ...+.+++..||. .+++.+..++.+
T Consensus 68 ~~~~Dlvii~vp~~---------------~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~G 117 (145)
T 2duw_A 68 PEKVDMVDVFRNSE---------------AAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAG 117 (145)
T ss_dssp SSCCSEEECCSCST---------------HHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTT
T ss_pred CCCCCEEEEEeCHH---------------HHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcC
Confidence 56899999999832 24666666665 3445566654443 466766666553
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-06 Score=82.75 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=50.2
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hc
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-RE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~ 78 (480)
||||+|||+|.||.. ++..|.+. ++++|+++|+++++.+++.+.. +.-....+..+.+ .+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~-~~~~l~v~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~ 63 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYG 63 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGC
T ss_pred CcEEEEECCCHHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHc-----------------CCCccccCHHHHhhcC
Confidence 369999999999984 88888764 4788889999999988776421 0001012223345 68
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 64 ~D~V~i~tp~~ 74 (323)
T 1xea_A 64 VDAVMIHAATD 74 (323)
T ss_dssp CSEEEECSCGG
T ss_pred CCEEEEECCch
Confidence 99999999854
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.8e-06 Score=78.52 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||+|+|+|.||..++..+... ++++.+ +|++++. . .++.+++|+++.+ ++
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~--~~eLva~~d~~~~~-----~-------------------~gv~v~~dl~~l~-~~ 55 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK--GHEIVGVIENTPKA-----T-------------------TPYQQYQHIADVK-GA 55 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSCC--------------------------CCSCBCSCTTTCT-TC
T ss_pred ceEEEEECcCHHHHHHHHHHHhC--CCEEEEEEecCccc-----c-------------------CCCceeCCHHHHh-CC
Confidence 68999999999999999999887 447665 7887542 0 1234567777766 99
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|++|-+.. | ..+.+.+ . +..+.-+|+.+| |.+++-.+.+++.. ....++++|.+.
T Consensus 56 DVvIDft~-p-----------------~a~~~~~-~-l~~g~~vVigTT---G~s~e~~~~l~~aa--~~~~v~~a~N~S 110 (243)
T 3qy9_A 56 DVAIDFSN-P-----------------NLLFPLL-D-EDFHLPLVVATT---GEKEKLLNKLDELS--QNMPVFFSANMS 110 (243)
T ss_dssp SEEEECSC-H-----------------HHHHHHH-T-SCCCCCEEECCC---SSHHHHHHHHHHHT--TTSEEEECSSCC
T ss_pred CEEEEeCC-h-----------------HHHHHHH-H-HhcCCceEeCCC---CCCHHHHHHHHHHH--hcCCEEEECCcc
Confidence 99885532 2 1222333 3 666766666555 34433223344333 234677888764
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=80.92 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=50.8
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++++-. +...+.+|+++.++
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~ 66 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-PGLNLAFVASRDEEKVKRDL--------------------PDVTVIASPEAAVQHP 66 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESCHHHHHTCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCcEECCHHHHhcCC
Confidence 58999999999997 56666553 578876 6799998765211 23567789999887
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 67 ~~D~V~i~tp~~ 78 (364)
T 3e82_A 67 DVDLVVIASPNA 78 (364)
T ss_dssp TCSEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 789999998864
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-06 Score=84.68 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=66.6
Q ss_pred CceEEEECCChhHHHHHHH-HHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAV-IALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~-La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|||+|.||..+... +....++++|+ ++|+++++.+...+ .......+|+++.+++
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~------------------~~~~~~~~~~~~ll~~ 63 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPI------------------YSHIHFTSDLDEVLND 63 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGG------------------GTTCEEESCTHHHHTC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHh------------------cCCCceECCHHHHhcC
Confidence 4699999999999864333 43333578877 78998776532221 0235677899998765
Q ss_pred --CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC--CcccHHHHHHHHHhh
Q 011650 79 --ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV--PVKTAEAIEKILMHN 144 (480)
Q Consensus 79 --aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv--~~gt~~~l~~~l~~~ 144 (480)
.|+|++|+|+..+ .+.+...+..|+-|+++.-+ .....+++.+..++.
T Consensus 64 ~~~D~V~i~tp~~~h------------------~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 64 PDVKLVVVCTHADSH------------------FEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp TTEEEEEECSCGGGH------------------HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCChHHH------------------HHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 8999999886432 11122334457777776522 333334454444443
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.11 E-value=6e-06 Score=81.59 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=51.0
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+.. ++.+++++++...++
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~l~~~~ 66 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICESW------------------RIPYADSLSSLAASC 66 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHHH------------------TCCBCSSHHHHHTTC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCccCcHHHhhcCC
Confidence 58999999999996 88878753 478876 8999998877655310 112456776644689
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 67 D~V~i~tp~~ 76 (319)
T 1tlt_A 67 DAVFVHSSTA 76 (319)
T ss_dssp SEEEECSCTT
T ss_pred CEEEEeCCch
Confidence 9999999854
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=79.59 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=55.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+|||+|||+|.||..++..|... +++++ .++|+++++.+.+.+... + .......+|+++.++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~-~~~~lv~v~d~~~~~~~~~a~~~~-~-------------~~~~~~~~~~~~ll~~~ 70 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN-Y-------------PESTKIHGSYESLLEDP 70 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT-C-------------CTTCEEESSHHHHHHCT
T ss_pred ceEEEEECchHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhC-C-------------CCCCeeeCCHHHHhcCC
Confidence 36899999999999999988874 46776 478999998877654210 0 002356788888776
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 71 ~~D~V~i~tp~~ 82 (362)
T 1ydw_A 71 EIDALYVPLPTS 82 (362)
T ss_dssp TCCEEEECCCGG
T ss_pred CCCEEEEcCChH
Confidence 589999998854
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.4e-06 Score=84.19 Aligned_cols=113 Identities=21% Similarity=0.230 Sum_probs=71.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE--E--------ecC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF--F--------STD 71 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~--~--------t~d 71 (480)
.||+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+-...+.+...++.-.....+... . ..+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~ 268 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL 268 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhH
Confidence 3899999999999999998887 899999999999888777522221111000000000000000 0 125
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++++++++|+||.|+..|-.. .|.+ +.++..+.++++.+||+.|.
T Consensus 269 l~e~l~~aDVVI~tvlipg~~-------ap~L-----vt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 269 VAEHIAKQDIVITTALIPGRP-------APRL-----VTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHHTCSEEEECCCCSSSC-------CCCC-----BCHHHHTTSCTTCEEEETTG
T ss_pred HHHHhcCCCEEEECCcCCCCC-------CCEE-----ecHHHHhcCCCCCEEEEEeC
Confidence 677789999999997554321 2221 13456677899999998763
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-05 Score=69.23 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=37.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
++|.|+|+|.+|..++..|.+. |++|+++|+++++++.+.+
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~ 47 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS 47 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHTTTT
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4699999999999999999998 8999999999988877654
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=83.07 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=72.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|+++|+++.+....... ++++ .+++++++.||+
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~--G~~Viv~d~~~~~~~~a~~~-------------------g~~~-~~l~ell~~aDi 315 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVME-------------------GFNV-VTLDEIVDKGDF 315 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTT-------------------TCEE-CCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--cCEEEEEeCChhhHHHHHHc-------------------CCEe-cCHHHHHhcCCE
Confidence 4799999999999999999987 99999999998775332221 1233 478888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc-cHHHHHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK-TAEAIEK 139 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~ 139 (480)
|++|+.|.. ..+ +...+.++++.+|++.++.++. ..+.+.+
T Consensus 316 Vi~~~~t~~---------lI~--------~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 316 FITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp EEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred EEECCChhh---------hcC--------HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 999965431 111 2344668999999999887663 4444544
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-06 Score=83.47 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCE---------EEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNL---------FFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l---------~~t~d~ 72 (480)
.||+|||+|.+|..+|..+... |.+|+++|+++++.+.+.+-...+.+...+.. . ..+.. .-..++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~-~--~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAA-G--EGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHTTCEECCCC----------------CHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEecccccc-c--cccchhhhhHHHHhhhHHHH
Confidence 3799999999999999999888 89999999999988877752211111000000 0 00000 002356
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++.++++|+||.|+..|... .+.+ +.++..+.++++.+||+.|.
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~-------ap~L-----vt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRP-------APRL-----VTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSC-------CCCC-----BCHHHHHTSCTTCEEEETTG
T ss_pred HHHHhcCCEEEECCCCCCcc-------ccee-----ecHHHHhcCCCCcEEEEEeC
Confidence 67789999999997544221 1211 12456677899999998664
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=80.01 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=52.2
Q ss_pred ceEEEECCChhHHHH-HHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGPT-MAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
|||+|||+|.||..+ +..|.+. +++++ ++|+++++.+.+.+.. +.....+|+++.++
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~--~~~~vav~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~l~~~ 61 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT--GGEVVSMMSTSAERGAAYATEN-----------------GIGKSVTSVEELVGDP 61 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT--TCEEEEEECSCHHHHHHHHHHT-----------------TCSCCBSCHHHHHTCT
T ss_pred CeEEEEcccHHHHHhhhHHhhcC--CCeEEEEECCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 699999999999998 7777764 88876 7899999887765421 11123567888775
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 62 ~~D~V~i~tp~~ 73 (332)
T 2glx_A 62 DVDAVYVSTTNE 73 (332)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChh
Confidence 599999998853
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.09 E-value=7e-06 Score=81.53 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=51.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|||+|.||..++..|.+. ++.+|+ ++|+++++.+++.+.. +..+.++|+++.+. +
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-~~~~~~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~~ 67 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-GNGEVVAVSSRTLESAQAFANKY-----------------HLPKAYDKLEDMLADES 67 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-CSEEEEEEECSCSSTTCC---CC-----------------CCSCEESCHHHHHTCTT
T ss_pred eEEEEEechHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCCC
Confidence 5899999999999999998875 366665 6799987765544321 11135788998887 7
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+|++|+|+.
T Consensus 68 ~D~V~i~tp~~ 78 (329)
T 3evn_A 68 IDVIYVATINQ 78 (329)
T ss_dssp CCEEEECSCGG
T ss_pred CCEEEECCCcH
Confidence 99999999864
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=82.98 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=68.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|++||+++.+...... .+.++ .+++++++.||+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~--G~~V~v~d~~~~~~~~a~~-------------------~G~~~-~~l~ell~~aDi 335 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGL--GATVWVTEIDPICALQAAM-------------------EGYRV-VTMEYAADKADI 335 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSCHHHHHHHHT-------------------TTCEE-CCHHHHTTTCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCChHhHHHHHH-------------------cCCEe-CCHHHHHhcCCE
Confidence 4799999999999999999877 9999999999876422221 11233 368888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV 131 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~ 131 (480)
|++++.|+. -.+ +...+.++++.+|++.+..++
T Consensus 336 Vi~~~~t~~---------lI~--------~~~l~~MK~gAilINvgrg~v 368 (494)
T 3d64_A 336 FVTATGNYH---------VIN--------HDHMKAMRHNAIVCNIGHFDS 368 (494)
T ss_dssp EEECSSSSC---------SBC--------HHHHHHCCTTEEEEECSSSSC
T ss_pred EEECCCccc---------ccC--------HHHHhhCCCCcEEEEcCCCcc
Confidence 999985531 111 234566899999999887655
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=80.00 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=71.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..++..|++..+..+|.+||+++++.+++.+.. .. ..-.+. .+++++++ ++|+
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~------------~~-~~~~~~-~~~~~e~v-~aDv 190 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYC------------ED-RGISAS-VQPAEEAS-RCDV 190 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHH------------HH-TTCCEE-ECCHHHHT-SSSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHH------------Hh-cCceEE-ECCHHHHh-CCCE
Confidence 589999999999999999987433578999999999998876410 00 001245 67888888 9999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|++|+|+.. +-+. ...+++++.|+..++..|+.
T Consensus 191 Vi~aTp~~~----------pv~~---------~~~l~~G~~V~~ig~~~p~~ 223 (322)
T 1omo_A 191 LVTTTPSRK----------PVVK---------AEWVEEGTHINAIGADGPGK 223 (322)
T ss_dssp EEECCCCSS----------CCBC---------GGGCCTTCEEEECSCCSTTC
T ss_pred EEEeeCCCC----------ceec---------HHHcCCCeEEEECCCCCCCc
Confidence 999988632 1110 14578899999887776664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-05 Score=75.53 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=72.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC--eEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI--EVAVVDI--SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~V~~~D~--~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+|+| +|.+|.+++..|+.+ ++ ++.++|+ ++++++.... ++..... .....+++.+..+++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~--~~~~el~L~Di~~~~~~~~~~~~--------dl~~~~~--~~~~~~v~~~~~~a~ 68 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA--YDSNTRVRQGGYEDT 68 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT--TTCCCEEEECCGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEcCCCChhhHHHHHH--------HHHHHHh--hCCCcEEEeCCHHHh
Confidence 7999999 999999999999887 54 7999999 8876543221 0111100 012233332235569
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+||++.+.|... + ....|+ ..+++..+.+.++. ++.+|++ +|.|.++...
T Consensus 69 ~~aDvVi~~ag~~~~~-g---~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv-~SNPv~~~~~ 127 (303)
T 1o6z_A 69 AGSDVVVITAGIPRQP-G---QTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLT-TSNPVDLLNR 127 (303)
T ss_dssp TTCSEEEECCCCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEE-CCSSHHHHHH
T ss_pred CCCCEEEEcCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-eCChHHHHHH
Confidence 9999999999876432 1 001121 33455555565553 4566655 6888877443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=79.60 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=53.2
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC--Ce-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS--IE-VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G--~~-V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+||+|||+|.||..++..|... ++ ++ |.++|+++++.+++.+.. +.-+..+|+++.++
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~-~~~~~~l~av~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 63 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTL-PRSEHQVVAVAARDLSRAKEFAQKH-----------------DIPKAYGSYEELAK 63 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS-CTTTEEEEEEECSSHHHHHHHHHHH-----------------TCSCEESSHHHHHH
T ss_pred ccEEEEECchHHHHHHHHHHHhC-CCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 36999999999999999988764 22 35 446899999988776420 11135788888776
Q ss_pred --cCCEEEEEccCC
Q 011650 78 --EANIVFVSVNTP 89 (480)
Q Consensus 78 --~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 64 ~~~vD~V~i~tp~~ 77 (334)
T 3ohs_X 64 DPNVEVAYVGTQHP 77 (334)
T ss_dssp CTTCCEEEECCCGG
T ss_pred CCCCCEEEECCCcH
Confidence 699999998864
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=80.50 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=51.9
Q ss_pred ceEEEECCChhHH-HHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGG-PTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.+|. .++..|... +++| .++|+++++.+++.+.. +...+.+|+++.++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~--~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 65 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA--GAELAGVFESDSDNRAKFTSLF-----------------PSVPFAASAEQLITDA 65 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT--TCEEEEEECSCTTSCHHHHHHS-----------------TTCCBCSCHHHHHTCT
T ss_pred cEEEEECCChHHHHHhhhhhcCC--CcEEEEEeCCCHHHHHHHHHhc-----------------CCCcccCCHHHHhhCC
Confidence 6899999999996 677777654 8886 57899998877665421 12345678888775
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|+||+|+.
T Consensus 66 ~~D~V~i~tp~~ 77 (336)
T 2p2s_A 66 SIDLIACAVIPC 77 (336)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChh
Confidence 689999998864
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=79.08 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=69.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+|+|||+|.+|..++..|....+..+|++||++ +.+++.+. +-... ...+..+ ++++++++||+
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~-----------l~~~~-g~~~~~~-~~~eav~~aDI 186 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILER-----------IGRRC-GVPARMA-APADIAAQADI 186 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHH-----------HHHHH-TSCEEEC-CHHHHHHHCSE
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHH-----------HHHhc-CCeEEEe-CHHHHHhhCCE
Confidence 4799999999999999999875346789999999 44444321 00000 1234566 89999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||.|+|.+. |-+ . .+.++++++|+..++..|+.
T Consensus 187 Vi~aT~s~~----------pvl-------~--~~~l~~G~~V~~vGs~~p~~ 219 (313)
T 3hdj_A 187 VVTATRSTT----------PLF-------A--GQALRAGAFVGAIGSSLPHT 219 (313)
T ss_dssp EEECCCCSS----------CSS-------C--GGGCCTTCEEEECCCSSTTC
T ss_pred EEEccCCCC----------ccc-------C--HHHcCCCcEEEECCCCCCch
Confidence 999987531 111 1 24688999999888877765
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.3e-06 Score=75.95 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=38.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~ 41 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAK 41 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 7999999999999999999998 9999999999999988764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.9e-05 Score=74.30 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=72.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHH----HHHcCCCCCCCCChHHHHHHhcCCCEEE--ecCHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVPRIN----AWNSDQLPIYEPGLEEVVKQCRGKNLFF--STDVE 73 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~----~l~~g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~ 73 (480)
|||+||| +|++|.++|..|+.+ ....++.++|+++ +.+ .++.. +. .-+++. +++..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~--~~-------------~~~v~~~~~~~~~ 64 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI--PT-------------AVKIKGFSGEDAT 64 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS--CS-------------SEEEEEECSSCCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC--CC-------------CceEEEecCCCcH
Confidence 7999999 899999999999864 2246899999987 222 22221 00 012332 12444
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+++++||+||++.+.|..+ |.+ +. +...+++..+.|.++.+ +.++++- |.|..+.-.+
T Consensus 65 ~~~~~aDivii~ag~~rkp---G~~-R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvv-tNPvd~~t~~ 127 (312)
T 3hhp_A 65 PALEGADVVLISAGVARKP---GMD-RSDLFNVNAGIVKNLVQQVAKTCP-KACIGII-TNPVNTTVAI 127 (312)
T ss_dssp HHHTTCSEEEECCSCSCCT---TCC-HHHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC-SSCHHHHHHH
T ss_pred HHhCCCCEEEEeCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe-cCcchhHHHH
Confidence 5699999999999887543 111 12 33455666677777764 4555443 6788775544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=72.94 Aligned_cols=72 Identities=10% Similarity=0.150 Sum_probs=50.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHH--hh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKH--VR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a--~~ 77 (480)
++|.|+|+|.||..+|..|.+.. |++|+++|+++++++.+.+...... +..-.+ .+.++ +.
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~--------------~l~~~~~~~ 104 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRSEGRNVISGDATDPD--------------FWERILDTG 104 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHHTTCCEEECCTTCHH--------------HHHTBCSCC
T ss_pred CcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHH--------------HHHhccCCC
Confidence 47999999999999999998631 6899999999999988875322111 110000 11222 56
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||+|+|.
T Consensus 105 ~ad~vi~~~~~ 115 (183)
T 3c85_A 105 HVKLVLLAMPH 115 (183)
T ss_dssp CCCEEEECCSS
T ss_pred CCCEEEEeCCC
Confidence 79999999874
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.4e-05 Score=77.57 Aligned_cols=68 Identities=10% Similarity=0.197 Sum_probs=50.5
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++.+.- +...+++|+++.++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~ 64 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-DEYQISKIMTSRTEEVKRDF--------------------PDAEVVHELEEITNDP 64 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESSTHHHHTCT
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCceECCHHHHhcCC
Confidence 58999999999997 56666553 578875 6799987643211 23467789998876
Q ss_pred cCCEEEEEccCCC
Q 011650 78 EANIVFVSVNTPT 90 (480)
Q Consensus 78 ~aDvVii~Vptp~ 90 (480)
+.|+|++|+|+..
T Consensus 65 ~vD~V~i~tp~~~ 77 (358)
T 3gdo_A 65 AIELVIVTTPSGL 77 (358)
T ss_dssp TCCEEEECSCTTT
T ss_pred CCCEEEEcCCcHH
Confidence 7899999998754
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-05 Score=77.05 Aligned_cols=87 Identities=16% Similarity=0.322 Sum_probs=54.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..++..+.+. +++++. ++|+++++.+. .|. + ....+++.+ ..++|
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-~~~elvav~d~~~~~~~~--~g~-~-----------------~~~~~~l~~-~~~~D 67 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-PDFEIAGIVRRNPAEVPF--ELQ-P-----------------FRVVSDIEQ-LESVD 67 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECC---------CCT-T-----------------SCEESSGGG-SSSCC
T ss_pred CEEEEECChHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHH--cCC-C-----------------cCCHHHHHh-CCCCC
Confidence 5899999999999999999874 578887 68999887654 111 1 112345544 37899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|++|+|+.. ..+.+...++.|.-|++++.
T Consensus 68 vViiatp~~~------------------h~~~~~~al~aG~~Vi~ekP 97 (304)
T 3bio_A 68 VALVCSPSRE------------------VERTALEILKKGICTADSFD 97 (304)
T ss_dssp EEEECSCHHH------------------HHHHHHHHHTTTCEEEECCC
T ss_pred EEEECCCchh------------------hHHHHHHHHHcCCeEEECCC
Confidence 9999987532 12223344566787877654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.6e-05 Score=74.26 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=72.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+...... .. .... ..++++.++.||+
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~--~~-------------------~~~~-~~~l~ell~~sDi 197 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAF--GMKVLCYDVVKREDL--KE-------------------KGCV-YTSLDELLKESDV 197 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHH--HH-------------------TTCE-ECCHHHHHHHCSE
T ss_pred cEEEEECcchHHHHHHHhhccc--CceeeecCCccchhh--hh-------------------cCce-ecCHHHHHhhCCE
Confidence 4799999999999999998876 999999998643211 11 1123 3477888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|.+++|--.... .-.+- .....++++.++|+.|=.+.=..+.+.+.|++.
T Consensus 198 vslh~Plt~~T~-----~li~~--------~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g 247 (334)
T 3kb6_A 198 ISLHVPYTKETH-----HMINE--------ERISLMKDGVYLINTARGKVVDTDALYRAYQRG 247 (334)
T ss_dssp EEECCCCCTTTT-----TCBCH--------HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred EEEcCCCChhhc-----cCcCH--------HHHhhcCCCeEEEecCccccccHHHHHHHHHhC
Confidence 999998532211 12332 234568999999997644433345577777653
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.6e-05 Score=76.30 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=51.2
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc-
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||.. .+..+.+. ++.+|+ ++|+++++.+ +.. +..++++|+++.+++
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-~~~~l~av~d~~~~~~~---~~~-----------------~~~~~~~~~~~ll~~~ 66 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-PGLELAGVSSSDASKVH---ADW-----------------PAIPVVSDPQMLFNDP 66 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHH---TTC-----------------SSCCEESCHHHHHHCS
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCcEEEEEECCCHHHHH---hhC-----------------CCCceECCHHHHhcCC
Confidence 57999999999997 67767654 578876 6899998765 110 234567899998764
Q ss_pred -CCEEEEEccCCC
Q 011650 79 -ANIVFVSVNTPT 90 (480)
Q Consensus 79 -aDvVii~Vptp~ 90 (480)
.|+|++|+|+..
T Consensus 67 ~vD~V~i~tp~~~ 79 (352)
T 3kux_A 67 SIDLIVIPTPNDT 79 (352)
T ss_dssp SCCEEEECSCTTT
T ss_pred CCCEEEEeCChHH
Confidence 899999998654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.3e-05 Score=79.79 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=67.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.||..+|..+... |.+|+++|+++.+.+...+. +..+ .+++++++++|+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~~-------------------Ga~~-~~l~e~l~~aDv 332 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMME-------------------GFDV-VTVEEAIGDADI 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHGGGCSE
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCEE-ecHHHHHhCCCE
Confidence 4799999999999999999887 89999999999887655431 1222 356777889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
||+|++++.. .+ ....+.++++.+|++.+..+
T Consensus 333 Vi~atgt~~~---------i~--------~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 333 VVTATGNKDI---------IM--------LEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp EEECSSSSCS---------BC--------HHHHHHSCTTCEEEECSSSG
T ss_pred EEECCCCHHH---------HH--------HHHHHhcCCCcEEEEeCCCC
Confidence 9999876421 11 13445578899998877554
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.7e-05 Score=79.45 Aligned_cols=90 Identities=19% Similarity=0.137 Sum_probs=66.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|+|+|.+|..+|..|... |.+|+++|+++.+....... +... .+++++++.||+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~~-------------------G~~~-~sL~eal~~ADV 269 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAME-------------------GYQV-LLVEDVVEEAHI 269 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHHh-------------------CCee-cCHHHHHhhCCE
Confidence 4799999999999999999987 99999999998765443321 1232 478888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
|+++.++..- .+ ....+.++++.+|++.+-.+
T Consensus 270 Vilt~gt~~i---------I~--------~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 270 FVTTTGNDDI---------IT--------SEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp EEECSSCSCS---------BC--------TTTGGGCCTTEEEEECSSSG
T ss_pred EEECCCCcCc---------cC--------HHHHhhcCCCcEEEEeCCCC
Confidence 9987665321 11 12345688999999876443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=79.79 Aligned_cols=70 Identities=7% Similarity=0.146 Sum_probs=54.6
Q ss_pred CceEEEECCC-hhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAG-YVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG-~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
+|||+|||+| .||..++..|.+. ++.+++ ++|+++++.+++.+. -++...+|+++.++
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~ell~~ 62 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH-PDAQIVAACDPNEDVRERFGKE------------------YGIPVFATLAEMMQH 62 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC-TTEEEEEEECSCHHHHHHHHHH------------------HTCCEESSHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEEEeCCHHHHHHHHHH------------------cCCCeECCHHHHHcC
Confidence 3699999999 9999999988875 467766 689999988776541 02345788888776
Q ss_pred -cCCEEEEEccCC
Q 011650 78 -EANIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 63 ~~vD~V~i~tp~~ 75 (387)
T 3moi_A 63 VQMDAVYIASPHQ 75 (387)
T ss_dssp SCCSEEEECSCGG
T ss_pred CCCCEEEEcCCcH
Confidence 499999998864
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.5e-05 Score=78.31 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=54.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec----CHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST----DVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~----d~~~a~ 76 (480)
+||+|||+|.||...+..|.+. ++.+|+ ++|+++++.+++.+. +.+..-......+ |+++.+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~------------~~~~g~~~~~~~~~~~~~~~~ll 87 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEI------------LKKNGKKPAKVFGNGNDDYKNML 87 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHH------------HHHTTCCCCEEECSSTTTHHHHT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHH------------HHhcCCCCCceeccCCCCHHHHh
Confidence 5899999999999999888864 577765 789999988876531 0000001134556 888877
Q ss_pred h--cCCEEEEEccCC
Q 011650 77 R--EANIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
+ +.|+|+||+|+.
T Consensus 88 ~~~~vD~V~i~tp~~ 102 (444)
T 2ixa_A 88 KDKNIDAVFVSSPWE 102 (444)
T ss_dssp TCTTCCEEEECCCGG
T ss_pred cCCCCCEEEEcCCcH
Confidence 6 589999998864
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.8e-05 Score=76.45 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=72.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||+|+| +|.||..++..+... +++++.+ +|++..... |. ... ++.. . ..++.+++|+++++.+
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~~~~~----G~-d~g-----el~g-~-~~gv~v~~dl~~ll~~ 73 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTGSPQL----GQ-DAG-----AFLG-K-QTGVALTDDIERVCAE 73 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTTCTTT----TS-BTT-----TTTT-C-CCSCBCBCCHHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecCcccc----cc-cHH-----HHhC-C-CCCceecCCHHHHhcC
Confidence 58999999 899999999988875 5888776 688643210 10 000 0000 0 1145668899998899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|+||.+++ | ....+.+...++.+.-+|+.||. .+++-.+.+++... ...++++|.+
T Consensus 74 ~DVVIDfT~-p-----------------~a~~~~~~~al~~G~~vVigTTG---~s~~~~~~L~~aa~--~~~vv~a~N~ 130 (272)
T 4f3y_A 74 ADYLIDFTL-P-----------------EGTLVHLDAALRHDVKLVIGTTG---FSEPQKAQLRAAGE--KIALVFSANM 130 (272)
T ss_dssp CSEEEECSC-H-----------------HHHHHHHHHHHHHTCEEEECCCC---CCHHHHHHHHHHTT--TSEEEECSCC
T ss_pred CCEEEEcCC-H-----------------HHHHHHHHHHHHcCCCEEEECCC---CCHHHHHHHHHHhc--cCCEEEECCC
Confidence 999999864 2 12222333334446666665543 22322233444331 3456788876
Q ss_pred c
Q 011650 159 L 159 (480)
Q Consensus 159 ~ 159 (480)
.
T Consensus 131 s 131 (272)
T 4f3y_A 131 S 131 (272)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.7e-05 Score=75.96 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=54.5
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||+|||+| .+|...+..|.+..++.++ .++|+++++.+++.+.. +...+.+|+++.++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~ 81 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG 81 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCC
Confidence 589999999 8999999888764246776 57899999988766410 12356789998775
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|+||+|+.
T Consensus 82 ~vD~V~i~tp~~ 93 (340)
T 1zh8_A 82 LVDAVDLTLPVE 93 (340)
T ss_dssp CCSEEEECCCGG
T ss_pred CCCEEEEeCCch
Confidence 589999998864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=76.01 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=69.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+..... .+.....+++.+.+.++|
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~--G~~~V~v~nR~~~ka~~la~~~~~~-------------~~~~~~~~~~~~~~~~aD 206 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLST--AAERIDMANRTVEKAERLVREGDER-------------RSAYFSLAEAETRLAEYD 206 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECSSHHHHHHHHHHSCSS-------------SCCEECHHHHHHTGGGCS
T ss_pred CEEEEECcHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHhhhc-------------cCceeeHHHHHhhhccCC
Confidence 5799999999999999999988 87 9999999999988876421000 001111124455678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||.|+|.+...+. ..+.+. ...++++.+|++.++.|..|
T Consensus 207 ivIn~t~~~~~~~~----~~~~i~---------~~~l~~~~~v~D~~y~P~~T 246 (297)
T 2egg_A 207 IIINTTSVGMHPRV----EVQPLS---------LERLRPGVIVSDIIYNPLET 246 (297)
T ss_dssp EEEECSCTTCSSCC----SCCSSC---------CTTCCTTCEEEECCCSSSSC
T ss_pred EEEECCCCCCCCCC----CCCCCC---------HHHcCCCCEEEEcCCCCCCC
Confidence 99999987543200 000000 13467889999998875544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=78.15 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=52.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||.|+|+|+||..+|..|++ .++|++.|++.++++++++....+.- + +.-..++.+.++++|+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~---~~~v~~~~~~~~~~~~~~~~~~~~~~-d------------~~d~~~l~~~~~~~Dv 80 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD---EFDVYIGDVNNENLEKVKEFATPLKV-D------------ASNFDKLVEVMKEFEL 80 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEEESCHHHHHHHTTTSEEEEC-C------------TTCHHHHHHHHTTCSE
T ss_pred cEEEEECCCHHHHHHHHHHhc---CCCeEEEEcCHHHHHHHhccCCcEEE-e------------cCCHHHHHHHHhCCCE
Confidence 899999999999999999876 58999999999999988753211100 0 0001123455789999
Q ss_pred EEEEccC
Q 011650 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
||.|+|.
T Consensus 81 Vi~~~p~ 87 (365)
T 3abi_A 81 VIGALPG 87 (365)
T ss_dssp EEECCCG
T ss_pred EEEecCC
Confidence 9999984
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=73.95 Aligned_cols=69 Identities=4% Similarity=0.043 Sum_probs=52.0
Q ss_pred ceEEEECCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc-
Q 011650 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||||||+|.+|. .++..+... +.+|+ ++|+++++.+++.+.. +...+.+|+++.+++
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~--~~~lvav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~~~ 87 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA--GARLAGFHEKDDALAAEFSAVY-----------------ADARRIATAEEILEDE 87 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT--TCEEEEEECSCHHHHHHHHHHS-----------------SSCCEESCHHHHHTCT
T ss_pred cEEEEECcCHHHHHHHHHHhhcC--CcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence 4899999999995 466666654 88855 6899999988776521 223467899987764
Q ss_pred -CCEEEEEccCC
Q 011650 79 -ANIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
.|+|+||+|+.
T Consensus 88 ~vD~V~I~tp~~ 99 (361)
T 3u3x_A 88 NIGLIVSAAVSS 99 (361)
T ss_dssp TCCEEEECCCHH
T ss_pred CCCEEEEeCChH
Confidence 89999998864
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.1e-05 Score=79.91 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=53.2
Q ss_pred ceEEEECCChhHH-HHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 2 VKICCIGAGYVGG-PTMAVIALKCPSIEV-AVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
+||+|||+|.||. .++..|.+. +++++ .++|+++++.+.+.+.. .+ ...+...+|+++.++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~g~~--------------~~~~~~~~~~~~ll~~ 148 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYGVD--------------PRKIYDYSNFDKIAKD 148 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTTCC--------------GGGEECSSSGGGGGGC
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhCCC--------------cccccccCCHHHHhcC
Confidence 6899999999997 888888764 36775 57899999887765421 00 011345678888776
Q ss_pred -cCCEEEEEccCC
Q 011650 78 -EANIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
++|+|++|+|+.
T Consensus 149 ~~vD~V~iatp~~ 161 (433)
T 1h6d_A 149 PKIDAVYIILPNS 161 (433)
T ss_dssp TTCCEEEECSCGG
T ss_pred CCCCEEEEcCCch
Confidence 789999998854
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=77.82 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=73.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-cCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-EAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
++|+|+|+|.||..+|..|.+. |++|+++|+++++++++.+.. + .++. +.++.+. +||
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~--GakVvv~D~~~~~l~~~a~~~-----------------g-a~~v-~~~~ll~~~~D 232 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD 232 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHc-----------------C-CEEE-ChHHHhccCCc
Confidence 5799999999999999999998 999999999998887665410 1 1222 2233344 899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+++.|.... ..+.. .+ +.+ +..+|.+++..|.+.++..+++++.+ +.+.|..+
T Consensus 233 Ivip~a~~~----------~I~~~----~~----~~l--g~~iV~e~An~p~t~~ea~~~L~~~G------i~~~Pd~~ 285 (364)
T 1leh_A 233 IFAPCALGA----------VLNDF----TI----PQL--KAKVIAGSADNQLKDPRHGKYLHELG------IVYAPDYV 285 (364)
T ss_dssp EEEECSCSC----------CBSTT----HH----HHC--CCSEECCSCSCCBSSHHHHHHHHHHT------CEECCHHH
T ss_pred EeeccchHH----------HhCHH----HH----HhC--CCcEEEeCCCCCcccHHHHHHHHhCC------CEEeccee
Confidence 999885322 12211 12 223 23355567777777656667777764 35677765
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.1e-05 Score=76.84 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=52.0
Q ss_pred ceEEEECCCh---hHHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGY---VGGPTMAVIALKCPSIEVA--VVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~---~G~~lA~~La~~~~G~~V~--~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||+|||+|. ||...+..+... ++++++ ++|+++++.+++.+.. .+ ..++++|+++.
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~g~~----------------~~~~~~~~~~l 100 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD-DHYELVAGALSSTPEKAEASGRELGLD----------------PSRVYSDFKEM 100 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT-SCEEEEEEECCSSHHHHHHHHHHHTCC----------------GGGBCSCHHHH
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHcCCC----------------cccccCCHHHH
Confidence 3799999998 999988887765 357776 5799999988766420 00 01346788887
Q ss_pred hhc-------CCEEEEEccCCC
Q 011650 76 VRE-------ANIVFVSVNTPT 90 (480)
Q Consensus 76 ~~~-------aDvVii~Vptp~ 90 (480)
++. .|+|+||+|+..
T Consensus 101 l~~~~~~~~~vD~V~I~tp~~~ 122 (417)
T 3v5n_A 101 AIREAKLKNGIEAVAIVTPNHV 122 (417)
T ss_dssp HHHHHHCTTCCSEEEECSCTTS
T ss_pred HhcccccCCCCcEEEECCCcHH
Confidence 765 899999998754
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.7e-05 Score=75.98 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=49.5
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc-
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.||.. .+..+.+. ++++|+ ++|++++++ .+. -+.....+|+++.+++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~---~~~-----------------~~~~~~~~~~~~ll~~~ 64 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-PHFELYKIVERSKELS---KER-----------------YPQASIVRSFKELTEDP 64 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-TTEEEEEEECSSCCGG---GTT-----------------CTTSEEESCSHHHHTCT
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHH---HHh-----------------CCCCceECCHHHHhcCC
Confidence 58999999999997 66667664 578876 679987652 211 0235677899998865
Q ss_pred -CCEEEEEccCC
Q 011650 79 -ANIVFVSVNTP 89 (480)
Q Consensus 79 -aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 65 ~vD~V~i~tp~~ 76 (362)
T 3fhl_A 65 EIDLIVVNTPDN 76 (362)
T ss_dssp TCCEEEECSCGG
T ss_pred CCCEEEEeCChH
Confidence 89999998864
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=74.84 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=65.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||.|.+|..+|..+... |.+|+++|+++.+...... .++++ .+++++++.||+
T Consensus 248 KTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~~-------------------~G~~v-v~LeElL~~ADI 305 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAAM-------------------DGFEV-VTLDDAASTADI 305 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHH-------------------TTCEE-CCHHHHGGGCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHHh-------------------cCcee-ccHHHHHhhCCE
Confidence 4799999999999999999887 8999999999876433222 12333 367888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
|++|++++- -.+ +.....++++.+|++.+-.
T Consensus 306 Vv~atgt~~---------lI~--------~e~l~~MK~GAILINvGRg 336 (464)
T 3n58_A 306 VVTTTGNKD---------VIT--------IDHMRKMKDMCIVGNIGHF 336 (464)
T ss_dssp EEECCSSSS---------SBC--------HHHHHHSCTTEEEEECSSS
T ss_pred EEECCCCcc---------ccC--------HHHHhcCCCCeEEEEcCCC
Confidence 999876531 111 2334568899999987644
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.6e-05 Score=77.68 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=53.2
Q ss_pred ceEEEECCCh---hHHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGY---VGGPTMAVIALKCPSIEVA--VVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~---~G~~lA~~La~~~~G~~V~--~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||+|||+|. ||...+..+... ++++++ ++|+++++.+++.+.. .+ ..++++|+++.
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~g~~----------------~~~~~~~~~~l 75 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD-NTFVLVAGAFDIDPIRGSAFGEQLGVD----------------SERCYADYLSM 75 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG-GSEEEEEEECCSSHHHHHHHHHHTTCC----------------GGGBCSSHHHH
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC-CCeEEEEEEeCCCHHHHHHHHHHhCCC----------------cceeeCCHHHH
Confidence 4899999999 999998888765 357876 4699999988776421 10 01346788887
Q ss_pred hhc-------CCEEEEEccCCC
Q 011650 76 VRE-------ANIVFVSVNTPT 90 (480)
Q Consensus 76 ~~~-------aDvVii~Vptp~ 90 (480)
+++ .|+|+||+|+..
T Consensus 76 l~~~~~~~~~vD~V~i~tp~~~ 97 (398)
T 3dty_A 76 FEQEARRADGIQAVSIATPNGT 97 (398)
T ss_dssp HHHHTTCTTCCSEEEEESCGGG
T ss_pred HhcccccCCCCCEEEECCCcHH
Confidence 754 899999998643
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=4.9e-05 Score=76.78 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=53.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.||+|||+| +|...+..+++...++++. ++|+++++.+++.+. -++...+|+++.+++.|
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~------------------~gv~~~~~~~~l~~~~D 68 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA------------------FGIPLYTSPEQITGMPD 68 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH------------------TTCCEESSGGGCCSCCS
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH------------------hCCCEECCHHHHhcCCC
Confidence 479999999 6988777776542357776 579999998887652 12445678888888999
Q ss_pred EEEEEccCCCC
Q 011650 81 IVFVSVNTPTK 91 (480)
Q Consensus 81 vVii~Vptp~~ 91 (480)
+++||+|++.+
T Consensus 69 ~v~i~~p~~~h 79 (372)
T 4gmf_A 69 IACIVVRSTVA 79 (372)
T ss_dssp EEEECCC--CT
T ss_pred EEEEECCCccc
Confidence 99999998764
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0003 Score=73.32 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=52.7
Q ss_pred ceEEEECCChhHHHHH--HHHHHc--C--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHH
Q 011650 2 VKICCIGAGYVGGPTM--AVIALK--C--PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA--~~La~~--~--~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~ 74 (480)
|||+|||.|.+|.+.. ..++.. . .+.++.++|+++++.+.... ......... ..-+++.|+|.++
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~--------~~~~~~~~~~~~~~i~~t~d~~e 72 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYI--------LARKYVEELNSPVKVVKTESLDE 72 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHH--------HHHHHHHHHTCCCEEEEESCHHH
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHH--------HHHHHHHHcCCCeEEEEeCCHHH
Confidence 7999999999987632 223321 1 13579999999998765332 011122221 2235788999999
Q ss_pred HhhcCCEEEEEcc
Q 011650 75 HVREANIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
|+++||+||+++.
T Consensus 73 Al~gAD~Vi~~~g 85 (477)
T 3u95_A 73 AIEGADFIINTAY 85 (477)
T ss_dssp HHTTCSEEEECCC
T ss_pred HhCCCCEEEECcc
Confidence 9999999999973
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.3e-05 Score=76.08 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=53.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcC-------CCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC-------PSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-------~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
+||||||+|.||...+..|.+.. .+.+|+ ++|+++++.+++.+.. +..++.+|++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~-----------------~~~~~y~d~~ 89 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL-----------------GAEKAYGDWR 89 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCeEECCHH
Confidence 48999999999999888887530 134555 6799999988876521 2235678999
Q ss_pred HHhh--cCCEEEEEccCCC
Q 011650 74 KHVR--EANIVFVSVNTPT 90 (480)
Q Consensus 74 ~a~~--~aDvVii~Vptp~ 90 (480)
+.++ +.|+|+||+|+..
T Consensus 90 ~ll~~~~vD~V~I~tp~~~ 108 (412)
T 4gqa_A 90 ELVNDPQVDVVDITSPNHL 108 (412)
T ss_dssp HHHHCTTCCEEEECSCGGG
T ss_pred HHhcCCCCCEEEECCCcHH
Confidence 9775 6899999988643
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=4.5e-05 Score=77.25 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=67.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEE--ecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFF--STDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~~ 78 (480)
++|+|+|+|.+|..+|..+... |.+|+++|+++++.+.+.+ ....+ .... ..++++.+.+
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g~~~---------------~~~~~~~~~l~~~l~~ 231 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFCGRI---------------HTRYSSAYELEGAVKR 231 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSS---------------EEEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcCCee---------------EeccCCHHHHHHHHcC
Confidence 4799999999999999999887 8999999999998877664 21110 0000 1234566789
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+|+||.|++.|... .+.+ ..+...+.++++.+|++.+
T Consensus 232 aDvVi~~~~~p~~~-------t~~l-----i~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 232 ADLVIGAVLVPGAK-------APKL-----VSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CSEEEECCCCTTSC-------CCCC-----BCHHHHTTSCTTCEEEEGG
T ss_pred CCEEEECCCcCCCC-------Ccce-----ecHHHHhcCCCCcEEEEEe
Confidence 99999999766421 1111 1233456688888888866
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0002 Score=73.60 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=58.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHc---CC-CCCC-CCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNS---DQ-LPIY-EPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~---g~-~~~~-e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||||||+|.||..++..+.+. ++.+|. ++|+++++.+...+ |. ..+. ..+..++-.....+...+++|+++.
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL 102 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI 102 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhC-CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence 5899999999999999888764 577755 57999998887643 20 1110 0011111111123567889999998
Q ss_pred hh--cCCEEEEEccCC
Q 011650 76 VR--EANIVFVSVNTP 89 (480)
Q Consensus 76 ~~--~aDvVii~Vptp 89 (480)
++ +.|+|++|+|+|
T Consensus 103 L~d~dIDaVviaTp~p 118 (446)
T 3upl_A 103 LSNPLIDVIIDATGIP 118 (446)
T ss_dssp HTCTTCCEEEECSCCH
T ss_pred hcCCCCCEEEEcCCCh
Confidence 76 589999998754
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=4.4e-05 Score=75.57 Aligned_cols=65 Identities=18% Similarity=0.469 Sum_probs=48.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..++..+.+. ++.++ .++|+++++ .+. -++..++|+++.+.++|
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-~~~elvav~d~~~~~--~~~--------------------~gv~~~~d~~~ll~~~D 60 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATL--DTK--------------------TPVFDVADVDKHADDVD 60 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCC--SSS--------------------SCEEEGGGGGGTTTTCS
T ss_pred CEEEEEeecHHHHHHHHHHhcC-CCCEEEEEEcCCHHH--hhc--------------------CCCceeCCHHHHhcCCC
Confidence 6899999999999999988865 46675 478987543 111 02556678777667899
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|++|+|+.
T Consensus 61 vViiatp~~ 69 (320)
T 1f06_A 61 VLFLCMGSA 69 (320)
T ss_dssp EEEECSCTT
T ss_pred EEEEcCCcH
Confidence 999998753
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00022 Score=72.60 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=64.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|+|+|.+|..+|..+... |.+|+++|+++.+....... +.. ..+++++++.+|+
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~~-------------------G~~-v~~Leeal~~ADI 278 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACMD-------------------GFR-LVKLNEVIRQVDI 278 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCE-ECCHHHHTTTCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHHc-------------------CCE-eccHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765433221 122 2467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
|++|..++. ..+ .+....++++.+|++.+-.+
T Consensus 279 Vi~atgt~~---------lI~--------~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 279 VITCTGNKN---------VVT--------REHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp EEECSSCSC---------SBC--------HHHHHHSCTTEEEEECSSTT
T ss_pred EEECCCCcc---------cCC--------HHHHHhcCCCcEEEEecCCC
Confidence 999854331 111 12345678899998876443
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=4.6e-05 Score=73.75 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=66.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+.. .....+++.+++.++|
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------------~~~~~~~~~~~~~~aD 177 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKI--VRPTLTVANRTMSRFNNWSLNI------------------NKINLSHAESHLDEFD 177 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT--CCSCCEEECSCGGGGTTCCSCC------------------EEECHHHHHHTGGGCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHhc------------------ccccHhhHHHHhcCCC
Confidence 4799999999999999999998 87 8999999998876655321 1111234555578999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||-|+|.....+. ..+ + -...++++.+|++.++.|..|
T Consensus 178 iVInaTp~Gm~~~~----~~~-l---------~~~~l~~~~~V~D~vY~P~~T 216 (277)
T 3don_A 178 IIINTTPAGMNGNT----DSV-I---------SLNRLASHTLVSDIVYNPYKT 216 (277)
T ss_dssp EEEECCC-----------CCS-S---------CCTTCCSSCEEEESCCSSSSC
T ss_pred EEEECccCCCCCCC----cCC-C---------CHHHcCCCCEEEEecCCCCCC
Confidence 99999875321100 000 0 023567889999998887655
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=71.80 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=51.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh--
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-- 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (480)
|+||+|||+ |.+|...+..+... +.++ .++|+++++. .+.+. -+...+.+|+++.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~ 62 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV--GGVLVASLDPATNVG-LVDSF-----------------FPEAEFFTEPEAFEAY 62 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESCHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCceeCCHHHHHHH
Confidence 789999999 79999999999886 6665 4689887752 22221 12356677888765
Q ss_pred --------hcCCEEEEEccCCC
Q 011650 77 --------REANIVFVSVNTPT 90 (480)
Q Consensus 77 --------~~aDvVii~Vptp~ 90 (480)
.+.|+|+||+|+..
T Consensus 63 ~~~l~~~~~~vD~V~I~tP~~~ 84 (312)
T 3o9z_A 63 LEDLRDRGEGVDYLSIASPNHL 84 (312)
T ss_dssp HHHHHHTTCCCSEEEECSCGGG
T ss_pred hhhhcccCCCCcEEEECCCchh
Confidence 47899999988643
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=72.00 Aligned_cols=70 Identities=21% Similarity=0.161 Sum_probs=51.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh--
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-- 76 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (480)
|+||||||+ |++|...+..+... +.+++ ++|+++++. .+.+. -+...+.+|+++.+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~ 62 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT--GNCLVSAYDINDSVG-IIDSI-----------------SPQSEFFTEFEFFLDH 62 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESSHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCcEECCHHHHHHh
Confidence 789999999 79999999999886 66654 678887652 22221 02356677887765
Q ss_pred ---------hcCCEEEEEccCCC
Q 011650 77 ---------REANIVFVSVNTPT 90 (480)
Q Consensus 77 ---------~~aDvVii~Vptp~ 90 (480)
.+.|+|+||+|+..
T Consensus 63 ~~~l~~~~~~~vD~V~I~tP~~~ 85 (318)
T 3oa2_A 63 ASNLKRDSATALDYVSICSPNYL 85 (318)
T ss_dssp HHHHTTSTTTSCCEEEECSCGGG
T ss_pred hhhhhhccCCCCcEEEECCCcHH
Confidence 46899999988643
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00032 Score=69.91 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=74.2
Q ss_pred eEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEeCCHHH--HH----HHHcCCCCCCCCChHHHHHHhcCCCEEEec
Q 011650 3 KICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVDISVPR--IN----AWNSDQLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~~--v~----~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|+|+ |.+|.+++..|+... -| .++.++|+++.. ++ .|+..-.+. ......++
T Consensus 26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~-------------~~~~~~~~ 92 (345)
T 4h7p_A 26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL-------------LDKVVVTA 92 (345)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTT-------------EEEEEEES
T ss_pred EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccC-------------CCcEEEcC
Confidence 8999996 999999999998751 01 279999998642 22 222211111 12356788
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+..+++++||+||++-.-|..+ |.+ +.| .+-+++..+.|.++..++.+|+. -|.|..+.-
T Consensus 93 ~~~~a~~~advVvi~aG~prkp---Gmt-R~DLl~~Na~I~~~~~~~i~~~a~~~~~vlv-vsNPvd~~~ 157 (345)
T 4h7p_A 93 DPRVAFDGVAIAIMCGAFPRKA---GME-RKDLLEMNARIFKEQGEAIAAVAASDCRVVV-VGNPANTNA 157 (345)
T ss_dssp CHHHHTTTCSEEEECCCCCCCT---TCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHH
T ss_pred ChHHHhCCCCEEEECCCCCCCC---CCC-HHHHHHHhHHHHHHHHHHHHhhccCceEEEE-eCCCcchHH
Confidence 8888899999999997766543 111 122 34455666677777777776554 356766543
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00025 Score=70.80 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=47.7
Q ss_pred CceEEEECCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|+||+|||+|.||. ..+..+.. .++++|+ ++|++ +.+++.+. ....+....+|+++.+++
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~-~~~~~l~av~d~~--~~~~~a~~---------------~~~~~~~~~~~~~~ll~~ 63 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMI-RETLEVKTIFDLH--VNEKAAAP---------------FKEKGVNFTADLNELLTD 63 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTT-CTTEEEEEEECTT--CCHHHHHH---------------HHTTTCEEESCTHHHHSC
T ss_pred eeEEEEEccCHHHHHHHHHHHhh-CCCeEEEEEECCC--HHHHHHHh---------------hCCCCCeEECCHHHHhcC
Confidence 35999999999998 45555655 3578876 67877 22222210 001235677899998764
Q ss_pred --CCEEEEEccCC
Q 011650 79 --ANIVFVSVNTP 89 (480)
Q Consensus 79 --aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 64 ~~~D~V~i~tp~~ 76 (349)
T 3i23_A 64 PEIELITICTPAH 76 (349)
T ss_dssp TTCCEEEECSCGG
T ss_pred CCCCEEEEeCCcH
Confidence 89999998864
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.1e-05 Score=70.76 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=54.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+|.|||+|.||.+++..|++. |. +|++++|++++.+++.+.. +....+++.+++.++|+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~--G~~~I~v~nR~~~ka~~la~~~------------------~~~~~~~~~~~~~~aDi 169 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM--GVKDIWVVNRTIERAKALDFPV------------------KIFSLDQLDEVVKKAKS 169 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCCEEEEESCHHHHHTCCSSC------------------EEEEGGGHHHHHHTCSE
T ss_pred eEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHc------------------ccCCHHHHHhhhcCCCE
Confidence 689999999999999999998 87 8999999999988776421 11234566677889999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||.|+|..
T Consensus 170 VInatp~g 177 (253)
T 3u62_A 170 LFNTTSVG 177 (253)
T ss_dssp EEECSSTT
T ss_pred EEECCCCC
Confidence 99998753
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00043 Score=68.72 Aligned_cols=115 Identities=16% Similarity=0.298 Sum_probs=73.8
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC--e-----EEEEeCCH--HHHHH----HHcCCCCCCCCChHHHHHHhcCCCEE
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI--E-----VAVVDISV--PRINA----WNSDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~-----V~~~D~~~--~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|||+|+| +|.+|.++|..|+.. +. + +.++|+++ ++.+. |+....++. ..+.
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~--~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~-------------~~~~ 68 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG--SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL-------------KDVI 68 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE-------------EEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc-------------CCEE
Confidence 6999999 799999999999876 44 5 99999974 23332 332211210 2356
Q ss_pred EecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 68 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+++..+++++||+||++-..|... +.+ +.| .+.+++..+.+.++.+++..|++ -|.|..+.-.
T Consensus 69 ~~~~~~~~~~daDvVvitAg~prkp---G~t-R~dll~~N~~i~~~i~~~i~~~~~~~~~viv-vsNPvd~~t~ 137 (333)
T 5mdh_A 69 ATDKEEIAFKDLDVAILVGSMPRRD---GME-RKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTNCL 137 (333)
T ss_dssp EESCHHHHTTTCSEEEECCSCCCCT---TCC-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHHH
T ss_pred EcCCcHHHhCCCCEEEEeCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-cCCchHHHHH
Confidence 6777777799999999997655432 111 233 34556666777777665543433 3577766433
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00018 Score=72.71 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=51.7
Q ss_pred ceEEEEC-CChhHHH-HH----HHHHHcCCCCeE----------EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCC
Q 011650 2 VKICCIG-AGYVGGP-TM----AVIALKCPSIEV----------AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKN 65 (480)
Q Consensus 2 mkI~VIG-lG~~G~~-lA----~~La~~~~G~~V----------~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~ 65 (480)
+||+||| +|.||.. .+ ..+.+. ++..+ .++|+++++.+++.+.. +.
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~-~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~-----------------~~ 68 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ-GGVRLKNGDRIMPDPILVGRSAEKVEALAKRF-----------------NI 68 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH-TSEECTTSCEEEEEEEEECSSSHHHHHHHHHT-----------------TC
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc-CceeecCCcccceeeEEEcCCHHHHHHHHHHh-----------------CC
Confidence 5899999 9999997 66 666655 23333 38999999988876421 11
Q ss_pred EEEecCHHHHhhc--CCEEEEEccCCC
Q 011650 66 LFFSTDVEKHVRE--ANIVFVSVNTPT 90 (480)
Q Consensus 66 l~~t~d~~~a~~~--aDvVii~Vptp~ 90 (480)
..+++|+++.+++ .|+|++|+|+..
T Consensus 69 ~~~~~~~~~ll~~~~iD~V~i~tp~~~ 95 (383)
T 3oqb_A 69 ARWTTDLDAALADKNDTMFFDAATTQA 95 (383)
T ss_dssp CCEESCHHHHHHCSSCCEEEECSCSSS
T ss_pred CcccCCHHHHhcCCCCCEEEECCCchH
Confidence 1357889887764 899999988654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.57 E-value=7.2e-05 Score=75.54 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=64.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|+|+|.+|..+|..+... |++|+++|+++++.+.+.+ ....+. ....-..++++.+.++|
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g~~~~-------------~~~~~~~~l~~~~~~~D 231 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFGGRVI-------------TLTATEANIKKSVQHAD 231 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSEE-------------EEECCHHHHHHHHHHCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcCceEE-------------EecCCHHHHHHHHhCCC
Confidence 5799999999999999999988 8999999999998877654 211100 00000123455678999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+||.|++.+... .+.+ ..+...+.++++.+|++.|..
T Consensus 232 vVi~~~g~~~~~-------~~~l-----i~~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 232 LLIGAVLVPGAK-------APKL-----VTRDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp EEEECCC--------------CC-----SCHHHHTTSCTTCEEEECC--
T ss_pred EEEECCCCCccc-------cchh-----HHHHHHHhhcCCCEEEEEecC
Confidence 999999864210 0100 123445667888888876643
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00027 Score=73.82 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=55.1
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||+|||+ |.||..++..|.+..++++|+ ++|+++++.+.+.+.. + ....++.+|+++.+
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~------g---------~~~~~~~~d~~ell 104 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL------Q---------LKHATGFDSLESFA 104 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT------T---------CTTCEEESCHHHHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------C---------CCcceeeCCHHHHh
Confidence 58999999 999999999998732477765 7899999888766421 0 01235678899877
Q ss_pred h--cCCEEEEEccCC
Q 011650 77 R--EANIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
+ +.|+|+||+|+.
T Consensus 105 ~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 105 QYKDIDMIVVSVKVP 119 (479)
T ss_dssp HCTTCSEEEECSCHH
T ss_pred cCCCCCEEEEcCCcH
Confidence 5 689999998854
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=4.8e-05 Score=73.53 Aligned_cols=122 Identities=12% Similarity=0.154 Sum_probs=69.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+... ++++++ ++|+++++.. +..--...++ ....+..++|+++++.++
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-~~~elva~~d~~~~~~~----g~d~~~~~g~-------~~~~v~~~~dl~~~l~~~ 73 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSLL----GSDAGELAGA-------GKTGVTVQSSLDAVKDDF 73 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCTTC----SCCTTCSSSS-------SCCSCCEESCSTTTTTSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCchhhh----hhhHHHHcCC-------CcCCceecCCHHHHhcCC
Confidence 79999998 99999999988764 588887 6788653311 1000000000 012345677888777899
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
|+||-+++ | ....+.+...+..+.-++..+| |.+.+-.+.+.+... ...++++|.+
T Consensus 74 DvVIDft~-p-----------------~~~~~~~~~a~~~G~~vVigTt---G~~~e~~~~L~~~a~--~~~vv~a~N~ 129 (273)
T 1dih_A 74 DVFIDFTR-P-----------------EGTLNHLAFCRQHGKGMVIGTT---GFDEAGKQAIRDAAA--DIAIVFAANF 129 (273)
T ss_dssp SEEEECSC-H-----------------HHHHHHHHHHHHTTCEEEECCC---CCCHHHHHHHHHHTT--TSCEEECSCC
T ss_pred CEEEEcCC-h-----------------HHHHHHHHHHHhCCCCEEEECC---CCCHHHHHHHHHhcC--CCCEEEEecC
Confidence 99996642 2 1223333344455666776665 333332333333221 2245677754
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=73.46 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=51.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC-------CeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS-------IEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-------~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||||||+|.||...+..+... ++ .+| .++|+++++.+++.+.. +..++.+|+++
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~-----------------g~~~~~~d~~~ 69 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKL-----------------GWSTTETDWRT 69 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESCHHH
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHH
Confidence 699999999999888877653 11 244 46799999988776421 22356789998
Q ss_pred Hhh--cCCEEEEEccCCC
Q 011650 75 HVR--EANIVFVSVNTPT 90 (480)
Q Consensus 75 a~~--~aDvVii~Vptp~ 90 (480)
.++ +.|+|+||+|+..
T Consensus 70 ll~~~~iDaV~I~tP~~~ 87 (390)
T 4h3v_A 70 LLERDDVQLVDVCTPGDS 87 (390)
T ss_dssp HTTCTTCSEEEECSCGGG
T ss_pred HhcCCCCCEEEEeCChHH
Confidence 775 5899999988654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=72.65 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=36.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|||+|.+|..++..+... |.+|+++|+++++.+.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~~ 213 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 213 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 4799999999999999988887 8999999999988776654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=8.1e-05 Score=76.28 Aligned_cols=71 Identities=13% Similarity=0.284 Sum_probs=54.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHH-hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKH-VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
|+|.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+++...++. +..-.+.+ +++ +.+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L--------------~~agi~~ 68 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLL--------------ESAGAAK 68 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHH--------------HHTTTTT
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHH--------------HhcCCCc
Confidence 6799999999999999999998 9999999999999999886433332 22222222 222 578
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
||+||+|++.
T Consensus 69 A~~viv~~~~ 78 (413)
T 3l9w_A 69 AEVLINAIDD 78 (413)
T ss_dssp CSEEEECCSS
T ss_pred cCEEEECCCC
Confidence 9999999864
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00019 Score=74.17 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=54.8
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEV-AVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||+|||+ |.||..++..|.+..++++| .++|+++++.+++.+.. + ....++.+|+++.+
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~------g---------~~~~~~~~~~~~ll 85 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRL------K---------LSNATAFPTLESFA 85 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------T---------CTTCEEESSHHHHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------C---------CCcceeeCCHHHHh
Confidence 58999999 99999999998864247776 47899999887766421 0 01235678899877
Q ss_pred h--cCCEEEEEccCC
Q 011650 77 R--EANIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
+ +.|+|++|+|+.
T Consensus 86 ~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 86 SSSTIDMIVIAIQVA 100 (438)
T ss_dssp HCSSCSEEEECSCHH
T ss_pred cCCCCCEEEEeCCcH
Confidence 6 689999998853
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=62.47 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=34.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~ 43 (480)
++|.|+|+|.+|..++..|.+. |++|+++|++ +++++.+.
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~ 44 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLE 44 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHH
Confidence 4699999999999999999998 9999999998 56555554
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0017 Score=63.94 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=70.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEEecC-HH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI--SVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFFSTD-VE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d-~~ 73 (480)
|||+|+|+ |.+|.+++..|+.+....++.++|+ ++++.+. +.... ++.. ....++.++| +.
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~~~----------~~~~i~~~~d~l~ 69 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AGTR----------SDANIYVESDENL 69 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TTSC----------CCCEEEEEETTCG
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-HhcC----------CCeEEEeCCcchH
Confidence 79999999 9999999999988721247999999 8765543 22110 1000 0113444343 46
Q ss_pred HHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 74 KHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+++++||+||++...|... + ....| ...+++..+.+.++. +.+|++ +|.|..+.-.
T Consensus 70 ~al~gaD~Vi~~Ag~~~~~-g---~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv-~SNPv~~~t~ 130 (313)
T 1hye_A 70 RIIDESDVVIITSGVPRKE-G---MSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV-ITNPVDVMTY 130 (313)
T ss_dssp GGGTTCSEEEECCSCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE-CSSSHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCC-C---CcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE-ecCcHHHHHH
Confidence 6799999999998765432 1 00112 233445555566655 455544 5688877543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00026 Score=69.22 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=78.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+++|+.. ....+++.|.+.|++|.+||......+ .+ ...+.+.++
T Consensus 6 ~kIgfIGLG~----------MG~~mA~~L~~~G~~V~v~dr~~~~~~---~l-------------------~~~G~~~~~ 53 (297)
T 4gbj_A 6 EKIAFLGLGN----------LGTPIAEILLEAGYELVVWNRTASKAE---PL-------------------TKLGATVVE 53 (297)
T ss_dssp CEEEEECCST----------THHHHHHHHHHTTCEEEEC-------C---TT-------------------TTTTCEECS
T ss_pred CcEEEEecHH----------HHHHHHHHHHHCCCeEEEEeCCHHHHH---HH-------------------HHcCCeEeC
Confidence 4899999965 999999999999999999997543321 11 123567889
Q ss_pred ChhhhcccCcEEEEeecCccc-ccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecC
Q 011650 405 DAYEATKDSHGVCILTEWDEF-KNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGK 467 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~ 467 (480)
|+.++++.+|+|+++..-+.- .+.-...+...+++..+|||+..+.+. +.+.+.|+.|..-+.
T Consensus 54 s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapV 123 (297)
T 4gbj_A 54 NAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPI 123 (297)
T ss_dssp SGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred CHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCc
Confidence 999999999999999887542 222223466667777799999998764 344567999976654
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.001 Score=68.10 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=51.6
Q ss_pred CceEEEECCChhHHHH--HHHHHH--cC-CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPT--MAVIAL--KC-PSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~l--A~~La~--~~-~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+|||+|||+|.+ .+. +..|+. .. ++.+|.++|+++++++.... +...+... .-+++.++|++++
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~---------~~~~~~~~-~~~v~~t~d~~~a 70 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD---------FVKRLVKD-RFKVLISDTFEGA 70 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH---------HHHHHHTT-SSEEEECSSHHHH
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH---------HHHHHhhC-CeEEEEeCCHHHH
Confidence 589999999996 332 223454 21 26789999999998775321 11100000 1356777898788
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+||++...+
T Consensus 71 l~~AD~Viitagvg 84 (417)
T 1up7_A 71 VVDAKYVIFQFRPG 84 (417)
T ss_dssp HTTCSEEEECCCTT
T ss_pred hCCCCEEEEcCCCC
Confidence 99999999998644
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0015 Score=63.54 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCC
Q 011650 309 RFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIH 388 (480)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~ 388 (480)
+.+..+...++..+.+++|+|+|+. .-+..+++.|...|++|.+|||.....+....++
T Consensus 140 ~a~~~~l~~~~~~l~g~~v~IiG~G----------~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g----------- 198 (293)
T 3d4o_A 140 GTIMMAIQHTDFTIHGANVAVLGLG----------RVGMSVARKFAALGAKVKVGARESDLLARIAEMG----------- 198 (293)
T ss_dssp HHHHHHHHHCSSCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-----------
T ss_pred HHHHHHHHhcCCCCCCCEEEEEeeC----------HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-----------
Confidence 3333344444557899999999963 4788999999999999999999764422222221
Q ss_pred CCCCCCCCcCceEE--ecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC---CCChHHHhhcCcEEE
Q 011650 389 LQPTSPSTINQVIV--ASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN---ILDVEKLRKIGFIVY 463 (480)
Q Consensus 389 ~~~~~~~~~~~~~~--~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~---~~~~~~~~~~g~~y~ 463 (480)
..+ ..++++.++++|+|+++++...+ +. ...+.|++..+++|.-+ -.+.+..+..|..++
T Consensus 199 -----------~~~~~~~~l~~~l~~aDvVi~~~p~~~i---~~-~~l~~mk~~~~lin~ar~~~~~~~~~a~~~Gv~~~ 263 (293)
T 3d4o_A 199 -----------MEPFHISKAAQELRDVDVCINTIPALVV---TA-NVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKAL 263 (293)
T ss_dssp -----------SEEEEGGGHHHHTTTCSEEEECCSSCCB---CH-HHHHHSCTTCEEEECSSTTCSBCHHHHHHHTCEEE
T ss_pred -----------CeecChhhHHHHhcCCCEEEECCChHHh---CH-HHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCEEE
Confidence 122 24678889999999999987543 33 34567888789999874 234455566788776
Q ss_pred Ee
Q 011650 464 SI 465 (480)
Q Consensus 464 ~i 465 (480)
.+
T Consensus 264 ~~ 265 (293)
T 3d4o_A 264 LV 265 (293)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00016 Score=72.88 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=49.4
Q ss_pred eEEEECCChhHHHHHHHHHHc------CCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALK------CPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~------~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||||+|.||...+..+... .++.+|+ ++|+++++.+++.+.. +.-++.+|+++.
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~el 89 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF-----------------GFEKATADWRAL 89 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH-----------------TCSEEESCHHHH
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh-----------------CCCeecCCHHHH
Confidence 699999999998777665431 1345655 6799999888776420 122567899997
Q ss_pred hh--cCCEEEEEccCCC
Q 011650 76 VR--EANIVFVSVNTPT 90 (480)
Q Consensus 76 ~~--~aDvVii~Vptp~ 90 (480)
++ +.|+|+||+|+..
T Consensus 90 l~~~~iDaV~IatP~~~ 106 (393)
T 4fb5_A 90 IADPEVDVVSVTTPNQF 106 (393)
T ss_dssp HHCTTCCEEEECSCGGG
T ss_pred hcCCCCcEEEECCChHH
Confidence 75 5799999988654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00055 Score=68.44 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=80.1
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+||+.....+....+ +
T Consensus 160 ~~l~gktvGIIG~G----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g 207 (351)
T 3jtm_A 160 YDLEGKTIGTVGAG----------RIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET----------------------G 207 (351)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH----------------------C
T ss_pred ccccCCEEeEEEeC----------HHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC----------------------C
Confidence 35789999999984 478899999999999999999876443333332 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+.+.+++++.++.+|+|+++++. ++-+++--.+....|++.+++||+-+ +.|.+.+.
T Consensus 208 ~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 267 (351)
T 3jtm_A 208 AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVV 267 (351)
T ss_dssp CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHH
Confidence 45567899999999999999986 46666433566788998889999875 66765443
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00064 Score=62.36 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=51.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|.+|..++..|+++ |++|++++|++++.+.+..+ ..+..-++ ++...+++.++|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~-~~~~~~D~--------------~d~~~~~~~~~d 63 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR--GHEVTAIVRNAGKITQTHKD-INILQKDI--------------FDLTLSDLSDQN 63 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCSHHHHHHCSS-SEEEECCG--------------GGCCHHHHTTCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcCchhhhhccCC-CeEEeccc--------------cChhhhhhcCCC
Confidence 7999999 599999999999998 99999999999888776521 11111111 111014678999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|...+
T Consensus 64 ~vi~~ag~~ 72 (221)
T 3ew7_A 64 VVVDAYGIS 72 (221)
T ss_dssp EEEECCCSS
T ss_pred EEEECCcCC
Confidence 999998754
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00034 Score=70.00 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=76.7
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|.+.|++|.+|||....+. ... .+
T Consensus 156 ~~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~----------------------~g 202 (352)
T 3gg9_A 156 RVLKGQTLGIFGYG----------KIGQLVAGYGRAFGMNVLVWGRENSKER-ARA----------------------DG 202 (352)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSHHHHHH-HHH----------------------TT
T ss_pred ccCCCCEEEEEeEC----------HHHHHHHHHHHhCCCEEEEECCCCCHHH-HHh----------------------cC
Confidence 45789999999984 4788999999999999999999753322 121 23
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+++.+++++.++.+|+|+++++. ++-+++--.+....|++.+++||+-+ +.+.+
T Consensus 203 ~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~ 259 (352)
T 3gg9_A 203 FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEEN 259 (352)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTT
T ss_pred ceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHH
Confidence 56667999999999999999885 44555433566788988889999875 55543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0016 Score=59.86 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=51.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.|. |.+|..++..|+++ |++|+++++++++.+.+......+..-++ ++...+++.++|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~D~--------------~d~~~~~~~~~d 64 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR--GHEVLAVVRDPQKAADRLGATVATLVKEP--------------LVLTEADLDSVD 64 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHTCTTSEEEECCG--------------GGCCHHHHTTCS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC--CCEEEEEEecccccccccCCCceEEeccc--------------ccccHhhcccCC
Confidence 79999997 99999999999998 99999999999988776542211111111 010014578999
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-|...
T Consensus 65 ~vi~~ag~ 72 (224)
T 3h2s_A 65 AVVDALSV 72 (224)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999865
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00033 Score=67.34 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=65.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|||+|.+|.+++..|++. |.+|++++|++++.+++.+- + +... ++++ +.++|+
T Consensus 119 k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~~ka~~la~~------------------~-~~~~-~~~~-l~~~Di 175 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQ--GLQVSVLNRSSRGLDFFQRL------------------G-CDCF-MEPP-KSAFDL 175 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTHHHHHHH------------------T-CEEE-SSCC-SSCCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC------------------C-CeEe-cHHH-hccCCE
Confidence 4799999999999999999998 89999999999988877520 0 1111 2222 348999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||-|+|..... ....+.+ .+...++++.+|++.++.| .|
T Consensus 176 VInaTp~Gm~~-----~~~l~~~-------~l~~~l~~~~~v~D~vY~P-~T 214 (269)
T 3phh_A 176 IINATSASLHN-----ELPLNKE-------VLKGYFKEGKLAYDLAYGF-LT 214 (269)
T ss_dssp EEECCTTCCCC-----SCSSCHH-------HHHHHHHHCSEEEESCCSS-CC
T ss_pred EEEcccCCCCC-----CCCCChH-------HHHhhCCCCCEEEEeCCCC-ch
Confidence 99998764322 0011111 1222345688999988877 44
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00092 Score=68.22 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=52.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||+|.||..++..+... |. +|+++|+++++.+.+.+.. .......+++.+.+.++|
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~--G~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~l~~~l~~aD 229 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL----------------GGEAVRFDELVDHLARSD 229 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH----------------TCEECCGGGHHHHHHTCS
T ss_pred CEEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc----------------CCceecHHhHHHHhcCCC
Confidence 4799999999999999999988 88 9999999998875554310 000001135566678999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+|.+
T Consensus 230 vVi~at~~~ 238 (404)
T 1gpj_A 230 VVVSATAAP 238 (404)
T ss_dssp EEEECCSSS
T ss_pred EEEEccCCC
Confidence 999998754
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00092 Score=67.07 Aligned_cols=103 Identities=19% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||....+.. ... +
T Consensus 172 ~~l~gktvGIIGlG----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g 218 (365)
T 4hy3_A 172 RLIAGSEIGIVGFG----------DLGKALRRVLSGFRARIRVFDPWLPRSML-EEN----------------------G 218 (365)
T ss_dssp CCSSSSEEEEECCS----------HHHHHHHHHHTTSCCEEEEECSSSCHHHH-HHT----------------------T
T ss_pred cccCCCEEEEecCC----------cccHHHHHhhhhCCCEEEEECCCCCHHHH-hhc----------------------C
Confidence 45789999999984 47899999999999999999998654432 221 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+.+ .++++.++.+|+|+++++- ++-+++--.+..+.|++.+++||+-+ ++|.+.+.
T Consensus 219 ~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 277 (365)
T 4hy3_A 219 VEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALM 277 (365)
T ss_dssp CEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHH
T ss_pred eee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHH
Confidence 333 4899999999999999886 34555433566788998889999975 67765443
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00049 Score=68.22 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=46.5
Q ss_pred ceEEEECCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc-
Q 011650 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE- 78 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~- 78 (480)
+||+|||+|.+|. ..+..+.+. ++.+|+ ++|+++++ .++...+|+++.++.
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-~~~~lvav~d~~~~~-------------------------~g~~~~~~~~~ll~~~ 79 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-ANFKLVATASRHGTV-------------------------EGVNSYTTIEAMLDAE 79 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-TTEEEEEEECSSCCC-------------------------TTSEEESSHHHHHHHC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-CCeEEEEEEeCChhh-------------------------cCCCccCCHHHHHhCC
Confidence 5899999999998 688888775 578865 57887431 124567889887765
Q ss_pred --CCEEEEEccC
Q 011650 79 --ANIVFVSVNT 88 (480)
Q Consensus 79 --aDvVii~Vpt 88 (480)
.|+|++|+|+
T Consensus 80 ~~vD~V~i~tp~ 91 (330)
T 4ew6_A 80 PSIDAVSLCMPP 91 (330)
T ss_dssp TTCCEEEECSCH
T ss_pred CCCCEEEEeCCc
Confidence 8999999875
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00052 Score=68.35 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=55.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHH-cCCCCCCCC-ChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWN-SDQLPIYEP-GLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~-~g~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+||||+|+|+||..++..|..+ ++.+|.+ .|++++....+. +...+.+.. ..++++. ...+..+.++++...
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~---~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFE---ESGIPVAGTVEDLIK 76 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHH---TTTCCCCCCHHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhc---ccccccccCHhHhhc
Confidence 57999999999999999998865 5677664 577755544333 222333221 2233332 134556677777667
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+||+|+|.
T Consensus 77 ~vDvV~~aTp~ 87 (340)
T 1b7g_O 77 TSDIVVDTTPN 87 (340)
T ss_dssp HCSEEEECCST
T ss_pred CCCEEEECCCC
Confidence 89999999875
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00037 Score=66.93 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=50.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
||||.|.|+|++|..++..|.++ |++|+++++++++.+.+......+.. +.+ +|++ +.++|
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~---~d~~--~~~~d 65 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNPDQMEAIRASGAEPLL------------WPG---EEPS--LDGVT 65 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCGGGHHHHHHTTEEEEE------------SSS---SCCC--CTTCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcChhhhhhHhhCCCeEEE------------ecc---cccc--cCCCC
Confidence 57999999999999999999998 99999999999887766542211110 000 1222 67899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-|...
T Consensus 66 ~vi~~a~~ 73 (286)
T 3ius_A 66 HLLISTAP 73 (286)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99998763
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=72.81 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=53.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHc-CCCCCCC--CC-hHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNS-DQLPIYE--PG-LEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-g~~~~~e--~~-l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||||+|+|+||..++..|... ++.++.+ .|+++++...+.+ ...+.+- ++ ...+ .. +.+.+..|+++.+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~-~~---~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRF-EK---EGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHH-HH---HTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceec-cC---CceEEcCcHHHhc
Confidence 5999999999999999998875 5677654 6887766665543 1111110 00 1011 11 1244566888877
Q ss_pred hcCCEEEEEccCC
Q 011650 77 REANIVFVSVNTP 89 (480)
Q Consensus 77 ~~aDvVii~Vptp 89 (480)
.++|+|++|+|..
T Consensus 78 ~~vDvV~~aTp~~ 90 (334)
T 2czc_A 78 EKVDIIVDATPGG 90 (334)
T ss_dssp TTCSEEEECCSTT
T ss_pred cCCCEEEECCCcc
Confidence 8999999998753
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00026 Score=68.57 Aligned_cols=124 Identities=10% Similarity=0.107 Sum_probs=71.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++||+|+| +|.||..++..+... ++.++.+ +|++.... .|. +..++.. ....++.+++|+++++.+
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~~~~----~G~------d~gel~G-~~~~gv~v~~dl~~ll~~ 88 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKGSSF----VDK------DASILIG-SDFLGVRITDDPESAFSN 88 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTTCTT----TTS------BGGGGTT-CSCCSCBCBSCHHHHTTS
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccc----ccc------chHHhhc-cCcCCceeeCCHHHHhcC
Confidence 36899999 999999999988764 5788665 58864210 010 0000000 001246678899998899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|++|-+.+ | ..+...+...++.+.-+|+.||.- +.+.. +.|++.. ....++++|.+
T Consensus 89 aDVvIDFT~-p-----------------~a~~~~~~~~l~~Gv~vViGTTG~--~~e~~-~~L~~aa--~~~~~~~a~N~ 145 (288)
T 3ijp_A 89 TEGILDFSQ-P-----------------QASVLYANYAAQKSLIHIIGTTGF--SKTEE-AQIADFA--KYTTIVKSGNM 145 (288)
T ss_dssp CSEEEECSC-H-----------------HHHHHHHHHHHHHTCEEEECCCCC--CHHHH-HHHHHHH--TTSEEEECSCC
T ss_pred CCEEEEcCC-H-----------------HHHHHHHHHHHHcCCCEEEECCCC--CHHHH-HHHHHHh--CcCCEEEECCC
Confidence 999998753 2 223333444444566676655532 11222 2233322 12466788876
Q ss_pred c
Q 011650 159 L 159 (480)
Q Consensus 159 ~ 159 (480)
.
T Consensus 146 S 146 (288)
T 3ijp_A 146 S 146 (288)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00087 Score=66.80 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||.....+... +
T Consensus 169 ~~l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~------------------------g 214 (345)
T 4g2n_A 169 MGLTGRRLGIFGMG----------RIGRAIATRARGFGLAIHYHNRTRLSHALEE------------------------G 214 (345)
T ss_dssp CCCTTCEEEEESCS----------HHHHHHHHHHHTTTCEEEEECSSCCCHHHHT------------------------T
T ss_pred cccCCCEEEEEEeC----------hhHHHHHHHHHHCCCEEEEECCCCcchhhhc------------------------C
Confidence 46789999999973 4789999999999999999999864432211 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.++.+++++.++.+|+|+++++. ++-+++--.+....|++.+++||+-+ +.|.+.+.
T Consensus 215 ~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~ 274 (345)
T 4g2n_A 215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALI 274 (345)
T ss_dssp CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHH
Confidence 45667899999999999999986 44455433566788988889999865 67765444
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0052 Score=58.34 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=76.3
Q ss_pred CCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 64 KNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
-++++++|-.+|++++|++|+-+|-. . .-..+++.|.++++.|.+|....|+|+-. +...++.
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG--~------------~t~~Iakkii~~lpEgAII~nTCTipp~~---ly~~le~ 189 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKG--N------------KQPDIIKKFADAIPEGAIVTHACTIPTTK---FAKIFKD 189 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTC--T------------THHHHHHHHGGGSCTTCEEEECSSSCHHH---HHHHHHH
T ss_pred cCcEeecchHHHhcCCCEEEEecCCC--C------------CcHHHHHHHHhhCcCCCEEecccCCCHHH---HHHHHHH
Confidence 45788888888999999999997632 1 12567899999999999999988998654 4445554
Q ss_pred hcCCCceEE-eeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEE
Q 011650 144 NSRGINFQI-LSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRIL 205 (480)
Q Consensus 144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~ 205 (480)
..+ .|+.+ .|+|- ..||.. .+..+|.. ..+++..+++.+|-+...+ ..+.
T Consensus 190 l~R-~DvgIsS~HPa-aVPgt~-------Gq~~~g~~--yAtEEqIeklveLaksa~k-~ay~ 240 (358)
T 2b0j_A 190 LGR-EDLNITSYHPG-CVPEMK-------GQVYIAEG--YASEEAVNKLYEIGKIARG-KAFK 240 (358)
T ss_dssp TTC-TTSEEEECBCS-SCTTTC-------CCEEEEES--SSCHHHHHHHHHHHHHHHS-CEEE
T ss_pred hCc-ccCCeeccCCC-CCCCCC-------Cccccccc--cCCHHHHHHHHHHHHHhCC-CeEe
Confidence 332 34443 36774 334442 12344532 3368899999999887653 4443
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00072 Score=67.04 Aligned_cols=103 Identities=12% Similarity=0.155 Sum_probs=76.8
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||.....+....+ +
T Consensus 141 ~~l~g~tvGIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g 188 (330)
T 4e5n_A 141 TGLDNATVGFLGMG----------AIGLAMADRLQGWGATLQYHEAKALDTQTEQRL----------------------G 188 (330)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHH----------------------T
T ss_pred CccCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhc----------------------C
Confidence 35689999999973 478899999999999999999987333333332 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
+.+. ++++.++.+|+|+++++. ++.+++--.+....|++.+++||+-+ +.|.+.+
T Consensus 189 ~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL 246 (330)
T 4e5n_A 189 LRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAV 246 (330)
T ss_dssp EEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred ceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHH
Confidence 3443 789999999999999986 34555433567788988889999865 5665443
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=61.44 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=63.4
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.+|..++.+|.+. ||+ +|++|+.+... .+ .++.+..++++.-.
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~--G~~--v~~vnp~~~~~------~i--------------~G~~~~~sl~el~~ 69 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYR--VLPVNPRFQGE------EL--------------FGEEAVASLLDLKE 69 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT--TCE--EEEECGGGTTS------EE--------------TTEECBSSGGGCCS
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC--CCE--EEEeCCCcccC------cC--------------CCEEecCCHHHCCC
Confidence 47999999 89999999999998 997 56677653110 00 23566677777556
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++|+|.. .+.++++++.+.-. ..+++..++. .+++.+..++.
T Consensus 70 ~vDlavi~vp~~---------------~~~~v~~~~~~~gi-~~i~~~~g~~----~~~~~~~a~~~ 116 (140)
T 1iuk_A 70 PVDILDVFRPPS---------------ALMDHLPEVLALRP-GLVWLQSGIR----HPEFEKALKEA 116 (140)
T ss_dssp CCSEEEECSCHH---------------HHTTTHHHHHHHCC-SCEEECTTCC----CHHHHHHHHHT
T ss_pred CCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEEEcCCcC----HHHHHHHHHHc
Confidence 799999999842 23344555544332 3455543332 35566666554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=65.65 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=78.2
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLM-GDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+..+.+++|+|+|+.. -...+++.|. ..|.+|.+|||.....+....+
T Consensus 158 ~~~l~g~~vgIIG~G~----------IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~--------------------- 206 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGA----------IQKEIARKAVHGLGMKLVYYDVAPADAETEKAL--------------------- 206 (348)
T ss_dssp CCCSTTCEEEEECCSH----------HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH---------------------
T ss_pred CcCCCCCEEEEEEECH----------HHHHHHHHHHHhcCCEEEEECCCCcchhhHhhc---------------------
Confidence 3467899999999854 8899999999 9999999999976543322222
Q ss_pred CceEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCC--CChHHH
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNI--LDVEKL 455 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~--~~~~~~ 455 (480)
++.+..++++.++.+|+|+++++.. +.+++--.++...|++..+|+|+-+. .+.+.+
T Consensus 207 -g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL 266 (348)
T 2w2k_A 207 -GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDAL 266 (348)
T ss_dssp -TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred -CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHH
Confidence 2445567889999999999999874 45654334566788877799998774 565444
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=72.16 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=51.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHc-CCCCCCC--CChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRINAWNS-DQLPIYE--PGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-g~~~~~e--~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|+||||+|+|++|..++..|.++ +++++.+ .|+++.....+.. .....+. ++.-.... ...+.+..++++.+
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~---~~~l~v~~~~~~~~ 76 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFE---KAGIEVAGTVDDML 76 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHH---HTTCCCCEEHHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeec---CCceEEcCCHHHHh
Confidence 68999999999999999999875 4677765 5776554443332 1111111 11000011 12344445667767
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+||.|+|.
T Consensus 77 ~~vDvV~~atp~ 88 (337)
T 1cf2_P 77 DEADIVIDCTPE 88 (337)
T ss_dssp HTCSEEEECCST
T ss_pred cCCCEEEECCCc
Confidence 899999999874
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=66.59 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=66.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH------HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP------RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~------~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
+||+|||.|.-|.+-|.+|.+. |.+|++=-+... ..++..+ .++++. +++++
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDS--Gv~V~Vglr~~s~~e~~~S~~~A~~-------------------~Gf~v~-~~~eA 95 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATE-------------------NGFKVG-TYEEL 95 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT--TCEEEEEECHHHHHTTCHHHHHHHH-------------------TTCEEE-EHHHH
T ss_pred CEEEEeCCChHhHHHHhHHHhc--CCcEEEEeCCCCcccccchHHHHHH-------------------CCCEec-CHHHH
Confidence 5899999999999999999998 999986655221 1111111 245554 57888
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++.||+|++-+|...+ ..+.+.|.+++++|+.+.....
T Consensus 96 ~~~ADvV~~L~PD~~q---------------~~vy~~I~p~lk~G~~L~faHG 133 (491)
T 3ulk_A 96 IPQADLVINLTPDKQH---------------SDVVRTVQPLMKDGAALGYSHG 133 (491)
T ss_dssp GGGCSEEEECSCGGGH---------------HHHHHHHGGGSCTTCEEEESSC
T ss_pred HHhCCEEEEeCChhhH---------------HHHHHHHHhhCCCCCEEEecCc
Confidence 9999999999874321 3456789999999999887543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0004 Score=64.14 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=50.3
Q ss_pred Cce-EEEEC-CChhHHHHHHHHH-HcCCCCeEEEEeCCHH-HHHHHHc-C-CCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 1 MVK-ICCIG-AGYVGGPTMAVIA-LKCPSIEVAVVDISVP-RINAWNS-D-QLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 1 ~mk-I~VIG-lG~~G~~lA~~La-~~~~G~~V~~~D~~~~-~v~~l~~-g-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
||| |.|.| .|.+|..++..|+ +. |++|++++++++ +.+.+.. + ...... ..+.-..++++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~------------~D~~d~~~~~~ 69 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT--DMHITLYGRQLKTRIPPEIIDHERVTVIE------------GSFQNPGXLEQ 69 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC--CCEEEEEESSHHHHSCHHHHTSTTEEEEE------------CCTTCHHHHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC--CceEEEEecCccccchhhccCCCceEEEE------------CCCCCHHHHHH
Confidence 566 99999 5999999999999 77 999999999998 7766631 1 100000 00100123345
Q ss_pred HhhcCCEEEEEcc
Q 011650 75 HVREANIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
+++++|+||.+..
T Consensus 70 ~~~~~d~vv~~ag 82 (221)
T 3r6d_A 70 AVTNAEVVFVGAM 82 (221)
T ss_dssp HHTTCSEEEESCC
T ss_pred HHcCCCEEEEcCC
Confidence 6788999999975
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00085 Score=67.32 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=82.4
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+..+|+|+|+.. ....++..|.+.|.+|.+||......+ .+. ..++..
T Consensus 21 ~~mkIgiIGlG~----------mG~~~A~~L~~~G~~V~v~dr~~~~~~---~l~-------------------~~g~~~ 68 (358)
T 4e21_A 21 QSMQIGMIGLGR----------MGADMVRRLRKGGHECVVYDLNVNAVQ---ALE-------------------REGIAG 68 (358)
T ss_dssp -CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHH---HHH-------------------TTTCBC
T ss_pred cCCEEEEECchH----------HHHHHHHHHHhCCCEEEEEeCCHHHHH---HHH-------------------HCCCEE
Confidence 457999999865 899999999999999999998543322 121 123456
Q ss_pred ecChhhhcccC---cEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecC
Q 011650 403 ASDAYEATKDS---HGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGK 467 (480)
Q Consensus 403 ~~~~~~a~~~~---d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~ 467 (480)
+.++.++++++ |+|+++++.+..++ -++.+...+++..+|+|+.+.... +.+.+.|+.|...+.
T Consensus 69 ~~s~~e~~~~a~~~DvVi~~vp~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 69 ARSIEEFCAKLVKPRVVWLMVPAAVVDS-MLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp CSSHHHHHHHSCSSCEEEECSCGGGHHH-HHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred eCCHHHHHhcCCCCCEEEEeCCHHHHHH-HHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCC
Confidence 67899999998 99999999884443 235666777777799999998843 234456898887654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0093 Score=58.06 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=79.2
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+..+.+++|+|+|+. .-+..+++.|...|++|.+|||.....+....++
T Consensus 151 ~~~~l~g~~v~IiG~G----------~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g-------------------- 200 (300)
T 2rir_A 151 TDYTIHGSQVAVLGLG----------RTGMTIARTFAALGANVKVGARSSAHLARITEMG-------------------- 200 (300)
T ss_dssp CSSCSTTSEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------------------
T ss_pred cCCCCCCCEEEEEccc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC--------------------
Confidence 3457899999999963 4788999999999999999999764322111221
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEEe
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~i 465 (480)
-......++++.++++|+|+++++... ++ +...+.|++..+++|.-+- .+-+..+..|..++.+
T Consensus 201 ~~~~~~~~l~~~l~~aDvVi~~~p~~~---i~-~~~~~~mk~g~~lin~a~g~~~~~~~~a~~~G~~~i~~ 267 (300)
T 2rir_A 201 LVPFHTDELKEHVKDIDICINTIPSMI---LN-QTVLSSMTPKTLILDLASRPGGTDFKYAEKQGIKALLA 267 (300)
T ss_dssp CEEEEGGGHHHHSTTCSEEEECCSSCC---BC-HHHHTTSCTTCEEEECSSTTCSBCHHHHHHHTCEEEEC
T ss_pred CeEEchhhHHHHhhCCCEEEECCChhh---hC-HHHHHhCCCCCEEEEEeCCCCCcCHHHHHHCCCEEEEC
Confidence 001112578888999999999999754 33 2355778887899998652 1224455678877654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00095 Score=67.63 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=35.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|+|+|+|.+|...+..+... |.+|+++|+++++.+.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4799999999999999988887 8899999999887766654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0007 Score=58.73 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=62.2
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.+|..++..|.+. |++| |++|+.. +.+ .++.+..++++...
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~--G~~v--~~Vnp~~-~~i---------------------~G~~~y~sl~~l~~ 76 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH--GYDV--YPVNPKY-EEV---------------------LGRKCYPSVLDIPD 76 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEE--EEECTTC-SEE---------------------TTEECBSSGGGCSS
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC--CCEE--EEECCCC-CeE---------------------CCeeccCCHHHcCC
Confidence 47999999 79999999999988 9984 5555542 100 23566677777556
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
.+|++++|+|.+ .+.++++++.+.-. ..++ +.++.. .+++.+..++.
T Consensus 77 ~vDlvvi~vp~~---------------~~~~vv~~~~~~gi-~~i~-~~~g~~---~~~l~~~a~~~ 123 (144)
T 2d59_A 77 KIEVVDLFVKPK---------------LTMEYVEQAIKKGA-KVVW-FQYNTY---NREASKKADEA 123 (144)
T ss_dssp CCSEEEECSCHH---------------HHHHHHHHHHHHTC-SEEE-ECTTCC---CHHHHHHHHHT
T ss_pred CCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEE-ECCCch---HHHHHHHHHHc
Confidence 799999999842 24555655554322 3444 333222 45566666554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00099 Score=64.77 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=80.2
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|.+.|.+|.+|||.....+ ..
T Consensus 119 ~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~---------------------------~~ 161 (290)
T 3gvx_A 119 LLYGKALGILGYG----------GIGRRVAHLAKAFGMRVIAYTRSSVDQN---------------------------VD 161 (290)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSSCCCTT---------------------------CS
T ss_pred eeecchheeeccC----------chhHHHHHHHHhhCcEEEEEeccccccc---------------------------cc
Confidence 4678999999984 5788999999999999999999754321 12
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh----hcCcEEEEe
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR----KIGFIVYSI 465 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~----~~g~~y~~i 465 (480)
...+++++.++.+|+|+++++. ++.+++--.+..+.|++..++||+-+ +.+.+.+. +-++...++
T Consensus 162 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~l 233 (290)
T 3gvx_A 162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLS 233 (290)
T ss_dssp EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEE
T ss_pred cccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEee
Confidence 3556899999999999999996 55555444567788998889999865 55654333 334544444
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=63.68 Aligned_cols=108 Identities=8% Similarity=0.066 Sum_probs=77.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .++...+
T Consensus 2 ~~i~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~ 49 (287)
T 3pef_A 2 QKFGFIGLGI----------MGSAMAKNLVKAGCSVTIWNRSPEKAEELAA----------------------LGAERAA 49 (287)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----------------------TTCEECS
T ss_pred CEEEEEeecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 4899999865 8899999999999999999986544222221 2456778
Q ss_pred ChhhhcccCcEEEEeecCc-ccccccH--HHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011650 405 DAYEATKDSHGVCILTEWD-EFKNLDY--QKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~-~~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+ ..++.-. +.+...+++..+|+|..+..... .+.+.|..|..
T Consensus 50 ~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~ 118 (287)
T 3pef_A 50 TPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE 118 (287)
T ss_dssp SHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 9999999999999999965 3333211 44556676777999998766432 23355777754
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00039 Score=68.40 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=46.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeE-EEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEV-AVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV--- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--- 76 (480)
+||+|||+|++|..++..+.++.++.++ .++|+++++ ...+.+.. +....+++.++.+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-----------------g~~~~~~~~e~ll~~~ 67 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-----------------GVTTTYAGVEGLIKLP 67 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-----------------TCCEESSHHHHHHHSG
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-----------------CCCcccCCHHHHHhcc
Confidence 5899999999999999998663356665 467998766 34433210 1112234555543
Q ss_pred --hcCCEEEEEccC
Q 011650 77 --REANIVFVSVNT 88 (480)
Q Consensus 77 --~~aDvVii~Vpt 88 (480)
.++|+||+|+|+
T Consensus 68 ~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 68 EFADIDFVFDATSA 81 (312)
T ss_dssp GGGGEEEEEECSCH
T ss_pred CCCCCcEEEECCCh
Confidence 458999999874
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0021 Score=62.62 Aligned_cols=108 Identities=9% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|+.+ -...++..|.+.|.+|.+||+.-...+.... .+++..
T Consensus 15 ~~~I~vIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~ 62 (296)
T 3qha_A 15 QLKLGYIGLGN----------MGAPMATRMTEWPGGVTVYDIRIEAMTPLAE----------------------AGATLA 62 (296)
T ss_dssp CCCEEEECCST----------THHHHHHHHTTSTTCEEEECSSTTTSHHHHH----------------------TTCEEC
T ss_pred CCeEEEECcCH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----------------------CCCEEc
Confidence 35899999865 8999999999999999999986554322221 245677
Q ss_pred cChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011650 404 SDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSI 465 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
+++.++++ +|+|+++++.+. .++ -++.+...+++..+|+|........ .+.+.|+.|..-
T Consensus 63 ~~~~~~~~-aDvvi~~vp~~~~~~~-v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~ 129 (296)
T 3qha_A 63 DSVADVAA-ADLIHITVLDDAQVRE-VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDA 129 (296)
T ss_dssp SSHHHHTT-SSEEEECCSSHHHHHH-HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred CCHHHHHh-CCEEEEECCChHHHHH-HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 89999999 999999999763 332 2356777777777999998876432 233457777643
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0026 Score=62.82 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=52.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHH----HHHcCCCCCCCCChHHHHHHhcCCCEE
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--PRIN----AWNSDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~----~l~~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
|||.|+|. |++|.+++..|+.+ |+ +|+++|+++ ++.+ .+.....++ . +.++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~--g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~------------~-~di~ 69 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL------------L-AGLE 69 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT------------E-EEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc------------c-CCeE
Confidence 79999996 99999999999987 75 899999974 2222 222111111 0 2356
Q ss_pred EecCHHHHhhcCCEEEEEccCC
Q 011650 68 FSTDVEKHVREANIVFVSVNTP 89 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp 89 (480)
.+++..++++++|+||.+...+
T Consensus 70 ~~~~~~~a~~~~D~Vih~Ag~~ 91 (327)
T 1y7t_A 70 ATDDPKVAFKDADYALLVGAAP 91 (327)
T ss_dssp EESCHHHHTTTCSEEEECCCCC
T ss_pred eccChHHHhCCCCEEEECCCcC
Confidence 6677788899999999997654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=65.61 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=76.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|.+.|++|.+|||....+. ...+ ++
T Consensus 165 ~l~g~tvGIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g~ 211 (347)
T 1mx3_A 165 RIRGETLGIIGLG----------RVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL----------------------GL 211 (347)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH----------------------TC
T ss_pred CCCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc----------------------CC
Confidence 5789999999974 4788999999999999999999865432 2222 23
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
.+..++++.++.+|+|+++++.. +.+++--++....|++..++||+-+ +.+.+.+
T Consensus 212 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL 269 (347)
T 1mx3_A 212 QRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKAL 269 (347)
T ss_dssp EECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHH
T ss_pred eecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHH
Confidence 45568899999999999999873 5555433556678988889999866 4565433
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0018 Score=65.54 Aligned_cols=104 Identities=10% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||.....+....+ +
T Consensus 187 ~~l~gktvGIIGlG----------~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~----------------------G 234 (393)
T 2nac_A 187 YDLEAMHVGTVAAG----------RIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL----------------------N 234 (393)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH----------------------T
T ss_pred ccCCCCEEEEEeEC----------HHHHHHHHHHHhCCCEEEEEcCCccchhhHhhc----------------------C
Confidence 46789999999984 578899999999999999999986544333333 2
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
+.+..++++.++.+|+|+++++. ++.+++--+.....|++.+++||+-+ +.+.+.+
T Consensus 235 ~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL 293 (393)
T 2nac_A 235 LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAV 293 (393)
T ss_dssp CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHH
Confidence 34456789999999999999986 35555433566788988889999866 5565433
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0031 Score=62.32 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=69.7
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV- 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~- 76 (480)
||||.|||+|.+|.+ +|..|.++ |++|+++|.++ ...+.|.+...+ +..-.+++...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~~~~~~~~L~~~gi~-----------------v~~g~~~~~l~~ 64 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKMYPPMSTQLEALGID-----------------VYEGFDAAQLDE 64 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSCCTTHHHHHHHTTCE-----------------EEESCCGGGGGS
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCCCcHHHHHHHhCCCE-----------------EECCCCHHHcCC
Confidence 689999999999996 88888888 99999999864 234445432111 22223444422
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH----------HHHhhC-CCCcEEEEecCCCcccHHH-HHHHHHhh
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIADVS-KSDKIVVEKSTVPVKTAEA-IEKILMHN 144 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~ 144 (480)
.++|+||++-.-|.+ .|. +..+.+ -+...+ +...+|-+..|..-.||.. +..+|++.
T Consensus 65 ~~~d~vV~Spgi~~~--------~p~---~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 65 FKADVYVIGNVAKRG--------MDV---VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp CCCSEEEECTTCCTT--------CHH---HHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcCCC--------CHH---HHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 479999887433321 232 233222 123322 3346777777776666655 56777765
Q ss_pred c
Q 011650 145 S 145 (480)
Q Consensus 145 ~ 145 (480)
+
T Consensus 134 g 134 (326)
T 3eag_A 134 G 134 (326)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=65.94 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=49.8
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||.|.| .|.+|..++..|+++ |++|+++++++++.+.+..+ ..+.. +.+.-..++.++++++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~-~~~~~------------~Dl~d~~~~~~~~~~~ 68 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHPEKIKIENEH-LKVKK------------ADVSSLDEVCEVCKGA 68 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT--TCEEEEECSCGGGCCCCCTT-EEEEC------------CCTTCHHHHHHHHTTC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEEcCcccchhccCc-eEEEE------------ecCCCHHHHHHHhcCC
Confidence 57999999 599999999999998 99999999997754322111 00000 1111112344567889
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||-|...
T Consensus 69 d~vi~~a~~ 77 (227)
T 3dhn_A 69 DAVISAFNP 77 (227)
T ss_dssp SEEEECCCC
T ss_pred CEEEEeCcC
Confidence 999999754
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=68.39 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=51.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|.+|..++..|++. |++|+++|+++++.+.+.+....+.. ....+.-..++.++++++|+
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~--G~~V~v~~R~~~~a~~la~~~~~~~~----------~~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHSTP----------ISLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESSHHHHHHTTTTCTTEEE----------EECCTTCHHHHHHHHTTSSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--cCEEEEEECCHHHHHHHHHhcCCceE----------EEeecCCHHHHHHHHcCCcE
Confidence 5799999999999999999987 89999999999988877642100000 00000000133455678999
Q ss_pred EEEEccC
Q 011650 82 VFVSVNT 88 (480)
Q Consensus 82 Vii~Vpt 88 (480)
||.|+|.
T Consensus 72 VIn~a~~ 78 (450)
T 1ff9_A 72 VISLIPY 78 (450)
T ss_dssp EEECCC-
T ss_pred EEECCcc
Confidence 9999874
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0019 Score=63.99 Aligned_cols=103 Identities=12% Similarity=0.176 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+.. -...+++.|...|.+|.+||+.....+....+ +
T Consensus 151 ~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g 198 (330)
T 2gcg_A 151 YGLTQSTVGIIGLGR----------IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF----------------------Q 198 (330)
T ss_dssp CCCTTCEEEEECCSH----------HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT----------------------T
T ss_pred cCCCCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEECCCCcchhHHHhc----------------------C
Confidence 356789999999854 88999999999999999999876432222211 2
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCC--CChHHH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNI--LDVEKL 455 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~--~~~~~~ 455 (480)
+.+. +++++++++|+|+++++.. +.+++--.++...|++..+++|+-+. .+.+.+
T Consensus 199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL 256 (330)
T 2gcg_A 199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDL 256 (330)
T ss_dssp CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHH
T ss_pred ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHH
Confidence 3444 7888999999999999875 44543224566788877799998764 554433
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0029 Score=63.56 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC-----eEEEEeCCHHH----HH----HHHcCCCCCCCCChHHHHHHhcCCCEE
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI-----EVAVVDISVPR----IN----AWNSDQLPIYEPGLEEVVKQCRGKNLF 67 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~-----~V~~~D~~~~~----v~----~l~~g~~~~~e~~l~~~~~~~~~~~l~ 67 (480)
+||+|+| +|.+|.++|..++.. +. ++.++|++.+. ++ .|+.+..++. .+.+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~--~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~-------------~~v~ 97 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG--EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL-------------REVS 97 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-------------EEEE
T ss_pred CEEEEECCCChHHHHHHHHHHcC--CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhc-------------CCcE
Confidence 5899999 799999999999876 32 27776654322 22 2222211110 2355
Q ss_pred EecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 68 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.+++..+++++||+||++-..|..+ |.+ +.|+ +.+++..+.|.++..++.+|++ -|.|..+.-.
T Consensus 98 i~~~~y~~~~daDvVVitag~prkp---G~t-R~DLl~~N~~I~k~i~~~i~~~a~p~~ivlV-vsNPvD~~t~ 166 (375)
T 7mdh_A 98 IGIDPYEVFEDVDWALLIGAKPRGP---GME-RAALLDINGQIFADQGKALNAVASKNVKVLV-VGNPCNTNAL 166 (375)
T ss_dssp EESCHHHHTTTCSEEEECCCCCCCT---TCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHHH
T ss_pred EecCCHHHhCCCCEEEEcCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCchhHHHH
Confidence 6677667799999999987665433 111 2232 3445555666666555666554 3567666433
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=64.52 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=67.5
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-...+++.|.+.|.+|.+|||..... .
T Consensus 166 ~~~l~gktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~---------------------------~ 208 (340)
T 4dgs_A 166 GHSPKGKRIGVLGLG----------QIGRALASRAEAFGMSVRYWNRSTLSG---------------------------V 208 (340)
T ss_dssp CCCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSCCTT---------------------------S
T ss_pred cccccCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCcccc---------------------------c
Confidence 346789999999973 478899999999999999999975431 1
Q ss_pred ceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHH
Q 011650 399 QVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEK 454 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~ 454 (480)
...+..+++++++.+|+|+++++- ++-+++--++....|++..++||+-+ +.|.+.
T Consensus 209 ~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~a 267 (340)
T 4dgs_A 209 DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDA 267 (340)
T ss_dssp CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-------
T ss_pred CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHH
Confidence 134567899999999999999885 34444333456678888889999855 455443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0017 Score=63.95 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+..+|+|+|+.. ....+++.|.+.|.+|.+||+.....+ .+. ..++..
T Consensus 30 ~~~~I~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~---~l~-------------------~~g~~~ 77 (320)
T 4dll_A 30 YARKITFLGTGS----------MGLPMARRLCEAGYALQVWNRTPARAA---SLA-------------------ALGATI 77 (320)
T ss_dssp CCSEEEEECCTT----------THHHHHHHHHHTTCEEEEECSCHHHHH---HHH-------------------TTTCEE
T ss_pred CCCEEEEECccH----------HHHHHHHHHHhCCCeEEEEcCCHHHHH---HHH-------------------HCCCEe
Confidence 456999999854 889999999999999999998643322 121 124677
Q ss_pred ecChhhhcccCcEEEEeecCcc-cccccHH--HHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011650 403 ASDAYEATKDSHGVCILTEWDE-FKNLDYQ--KIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSI 465 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~--~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
.+++.++++++|+|+++++.+. .+.. .. .+...+++..+|+|..+..... .+.+.|..|..-
T Consensus 78 ~~~~~e~~~~aDvVi~~vp~~~~~~~v-~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~ 148 (320)
T 4dll_A 78 HEQARAAARDADIVVSMLENGAVVQDV-LFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDT 148 (320)
T ss_dssp ESSHHHHHTTCSEEEECCSSHHHHHHH-HTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred eCCHHHHHhcCCEEEEECCCHHHHHHH-HcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 8899999999999999998753 2221 11 3445666777999998876532 234557777643
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00063 Score=70.68 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=39.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||.|+|+|.+|..+|..|... ||+|+++|.|+++++.+.+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~--~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE--NNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST--TEEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH
Confidence 8999999999999999999987 9999999999999998875
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0015 Score=65.60 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=67.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCE-EEe---cCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNL-FFS---TDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l-~~t---~d~~~a~~ 77 (480)
.+|.|+|+|.+|...+..+... |.+|+++|+++++.+.+.+-.. ..+ ... .++.+.+.
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 229 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG----------------SRVELLYSNSAEIETAVA 229 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG----------------GGSEEEECCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhC----------------ceeEeeeCCHHHHHHHHc
Confidence 4799999999999999999887 8899999999999887764100 011 111 23445567
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g 132 (480)
++|+||-|++.|... .+.+ ..+...+.++++.+|++.+..+.|
T Consensus 230 ~~DvVI~~~~~~~~~-------~~~l-----i~~~~~~~~~~g~~ivdv~~~~gg 272 (361)
T 1pjc_A 230 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGG 272 (361)
T ss_dssp TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCC
T ss_pred CCCEEEECCCcCCCC-------CCee-----cCHHHHhhCCCCCEEEEEecCCCC
Confidence 899999999765321 1110 012234567888888876654433
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00066 Score=67.37 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=47.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
|+||+|||+|.+|...+..+ . ++.+|+ ++|+++ ++.+++.+- .++. .-.....+|+++.++
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~--~~~~lvav~d~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~ll~~ 65 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-D--EECSITGIAPGVPEEDLSKLEKA------------ISEM-NIKPKKYNNWWEMLEK 65 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-C--TTEEEEEEECSSTTCCCHHHHHH------------HHTT-TCCCEECSSHHHHHHH
T ss_pred ceEEEEEccchhHHHHHHhc-C--CCcEEEEEecCCchhhHHHHHHH------------HHHc-CCCCcccCCHHHHhcC
Confidence 46999999999888777666 3 478877 478876 333332210 0000 001356789988776
Q ss_pred -cCCEEEEEccCC
Q 011650 78 -EANIVFVSVNTP 89 (480)
Q Consensus 78 -~aDvVii~Vptp 89 (480)
+.|+|+||+|+.
T Consensus 66 ~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 66 EKPDILVINTVFS 78 (337)
T ss_dssp HCCSEEEECSSHH
T ss_pred CCCCEEEEeCCcc
Confidence 489999998753
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00067 Score=67.39 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=28.9
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||||+|+| .|++|..+...|..+ |.+++..+..+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-p~~el~~l~s~ 38 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-PHMNITALTVS 38 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-CCCcEEEEEec
Confidence 78999999 599999999999885 67888877543
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0023 Score=63.52 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+.. -+..+++.|...|.+|.+|||.... +....++
T Consensus 146 ~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g---------------------- 192 (334)
T 2dbq_A 146 YDVYGKTIGIIGLGR----------IGQAIAKRAKGFNMRILYYSRTRKE-EVERELN---------------------- 192 (334)
T ss_dssp CCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC----------------------
T ss_pred cCCCCCEEEEEccCH----------HHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC----------------------
Confidence 357889999999854 8899999999999999999998766 3222221
Q ss_pred eEEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+.+ .+++++++++|+|+++++... .+++--.++...|++..+++|+-+ +.+.+
T Consensus 193 ~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~ 248 (334)
T 2dbq_A 193 AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTN 248 (334)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHH
Confidence 333 478889999999999998765 555333566778887779999865 34533
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0027 Score=63.04 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=75.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||....+. ...+ +
T Consensus 161 ~~l~g~tvgIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g 207 (335)
T 2g76_A 161 TELNGKTLGILGLG----------RIGREVATRMQSFGMKTIGYDPIISPEV-SASF----------------------G 207 (335)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSSCHHH-HHHT----------------------T
T ss_pred cCCCcCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEECCCcchhh-hhhc----------------------C
Confidence 46789999999974 4788899999999999999999876542 2222 2
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+.+ .++++.++.+|+|+++++.. +.+++=-.++...|++.+++||+-+ +.+.+
T Consensus 208 ~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~ 263 (335)
T 2g76_A 208 VQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEG 263 (335)
T ss_dssp CEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred cee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHH
Confidence 333 47899999999999999885 3555322466788988889999765 45644
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00036 Score=65.41 Aligned_cols=39 Identities=5% Similarity=-0.044 Sum_probs=36.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++|.|+|+|.+|..+|..|.+. |+ |+++|+++++++.+.
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~~~~~~ 48 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKKVLR 48 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHHHHHHh
Confidence 5799999999999999999987 89 999999999988876
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=64.18 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=44.5
Q ss_pred CceEEEECCChhHHHHHHHHHHc--CCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALK--CPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~--~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++||+|||+|.||...+..+... .++.+++ ++|+++ ..+ ..++. .+|+++.++
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-----~a~------------------~~g~~-~~~~~ell~ 62 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-----LGS------------------LDEVR-QISLEDALR 62 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-----CCE------------------ETTEE-BCCHHHHHH
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-----HHH------------------HcCCC-CCCHHHHhc
Confidence 36899999999999999888641 1356766 466642 000 01233 368888776
Q ss_pred --cCCEEEEEccCC
Q 011650 78 --EANIVFVSVNTP 89 (480)
Q Consensus 78 --~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 63 ~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 63 SQEIDVAYICSESS 76 (294)
T ss_dssp CSSEEEEEECSCGG
T ss_pred CCCCCEEEEeCCcH
Confidence 689999998864
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0021 Score=63.48 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECC-CCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDP-QVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+||| ....+ ....+ +
T Consensus 143 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~----------------------g 189 (320)
T 1gdh_A 143 KLDNKTLGIYGFG----------SIGQALAKRAQGFDMDIDYFDTHRASSS-DEASY----------------------Q 189 (320)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHH----------------------T
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhc----------------------C
Confidence 4688999999974 4788999999999999999999 77653 22222 2
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEK 454 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~ 454 (480)
+.+.+++++.++++|+|+++++.. +.+++--+.....|++..+++|+-+ +.+.+.
T Consensus 190 ~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~a 247 (320)
T 1gdh_A 190 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNEL 247 (320)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHH
Confidence 345558899999999999999874 4555332456688888889999866 356443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0022 Score=63.57 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=74.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|.+.|.+|.+|||....+ ....+ ++
T Consensus 143 ~l~g~~vgIIG~G----------~iG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~----------------------g~ 189 (333)
T 2d0i_A 143 SLYGKKVGILGMG----------AIGKAIARRLIPFGVKLYYWSRHRKVN-VEKEL----------------------KA 189 (333)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCHH-HHHHH----------------------TE
T ss_pred CCCcCEEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCcchh-hhhhc----------------------Cc
Confidence 5688999999984 488899999999999999999987652 22222 23
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
.+. +++++++++|+|+++++.. +.+++--+.+...|++. +++|+-+ +.+.+
T Consensus 190 ~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~ 243 (333)
T 2d0i_A 190 RYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEK 243 (333)
T ss_dssp EEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHH
T ss_pred eec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHH
Confidence 443 7888899999999999987 66664334556788877 9999865 44543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0013 Score=68.39 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=52.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE----ecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF----STDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~----t~d~~~a~ 76 (480)
+++|.|+|+|.+|.+++..|++. +|++|+++++++++.+++.+.. .+ ..+.+ ..++.+++
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~-~g~~V~v~~R~~~ka~~la~~~-~~--------------~~~~~D~~d~~~l~~~l 86 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAAN-DDINVTVACRTLANAQALAKPS-GS--------------KAISLDVTDDSALDKVL 86 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHGGG-TC--------------EEEECCTTCHHHHHHHH
T ss_pred CCEEEEECChHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhc-CC--------------cEEEEecCCHHHHHHHH
Confidence 36899999999999999999976 3689999999999988876420 00 00000 01344557
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
+++|+||.|+|.
T Consensus 87 ~~~DvVIn~tp~ 98 (467)
T 2axq_A 87 ADNDVVISLIPY 98 (467)
T ss_dssp HTSSEEEECSCG
T ss_pred cCCCEEEECCch
Confidence 789999999874
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0029 Score=61.98 Aligned_cols=100 Identities=23% Similarity=0.265 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||....+ ....+ +
T Consensus 138 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~----------------------g 184 (307)
T 1wwk_A 138 IELEGKTIGIIGFG----------RIGYQVAKIANALGMNILLYDPYPNEE-RAKEV----------------------N 184 (307)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHT----------------------T
T ss_pred cccCCceEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCCChh-hHhhc----------------------C
Confidence 35689999999974 478899999999999999999987763 22222 2
Q ss_pred eEEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+.+ .++++.++++|+|+++++... .+++--......|++..+++|+-+ +.+.+
T Consensus 185 ~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~ 240 (307)
T 1wwk_A 185 GKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240 (307)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred ccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 333 378899999999999998743 555332456678888889999866 45644
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0023 Score=64.24 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=77.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCe-EEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKAR-LSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
..+.+++|+|+|+. .-...+++.|...|++ |.+||+.....+....+
T Consensus 160 ~~l~g~tvgIIG~G----------~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~---------------------- 207 (364)
T 2j6i_A 160 YDIEGKTIATIGAG----------RIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV---------------------- 207 (364)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT----------------------
T ss_pred ccCCCCEEEEECcC----------HHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc----------------------
Confidence 45789999999974 5788999999999997 99999876443332322
Q ss_pred ceEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
++....++++.++.+|+|+++++.. +.+++--+.....|++..++||+-+ +.+.+.+
T Consensus 208 g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL 267 (364)
T 2j6i_A 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267 (364)
T ss_dssp TEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred CcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHH
Confidence 2445568999999999999999884 5555333456788988889999876 5665543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=64.15 Aligned_cols=110 Identities=7% Similarity=0.029 Sum_probs=77.6
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+-.+|+|+|+.. ....+++.|.+.|.+|.+||+.....+.... .++..
T Consensus 20 ~m~~I~iIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----------------------~g~~~ 67 (310)
T 3doj_A 20 HMMEVGFLGLGI----------MGKAMSMNLLKNGFKVTVWNRTLSKCDELVE----------------------HGASV 67 (310)
T ss_dssp CSCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----------------------TTCEE
T ss_pred cCCEEEEECccH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----------------------CCCeE
Confidence 446999999855 8999999999999999999986544222222 23567
Q ss_pred ecChhhhcccCcEEEEeecCcc-ccccc--HHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011650 403 ASDAYEATKDSHGVCILTEWDE-FKNLD--YQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
.+++.++++++|+|+++++.+. .++.- .+.+...+++..+|+|..+..... .+.+.|..|..
T Consensus 68 ~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~ 138 (310)
T 3doj_A 68 CESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE 138 (310)
T ss_dssp CSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 7899999999999999997753 32211 023445566677999998876432 23355777754
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00091 Score=65.41 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=77.1
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+++||. .....+++.|.+.|++|.+||......+.... .+.+.++
T Consensus 4 ~kIgfIGlG----------~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~----------------------~Ga~~a~ 51 (300)
T 3obb_A 4 KQIAFIGLG----------HMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----------------------AGASAAR 51 (300)
T ss_dssp CEEEEECCS----------TTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH----------------------TTCEECS
T ss_pred CEEEEeeeh----------HHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----------------------cCCEEcC
Confidence 589999995 48999999999999999999975433221111 3467889
Q ss_pred ChhhhcccCcEEEEeecCccc-ccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 405 DAYEATKDSHGVCILTEWDEF-KNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~-~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
|+.|+++++|+|+++...++- ++. ....+...+++..+|||+..+-+. +.+++.|+.|.--.
T Consensus 52 s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP 122 (300)
T 3obb_A 52 SARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP 122 (300)
T ss_dssp SHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred CHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence 999999999999998876531 111 001123344556799999998763 34456799887543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.003 Score=54.28 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=73.8
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|+|+|++-++ ++.+..+++.|.+.|++|...||... ++ .++..
T Consensus 13 ~p~~IavIGaS~~~------g~~G~~~~~~L~~~G~~V~~vnp~~~--~i-------------------------~G~~~ 59 (138)
T 1y81_A 13 EFRKIALVGASKNP------AKYGNIILKDLLSKGFEVLPVNPNYD--EI-------------------------EGLKC 59 (138)
T ss_dssp -CCEEEEETCCSCT------TSHHHHHHHHHHHTTCEEEEECTTCS--EE-------------------------TTEEC
T ss_pred CCCeEEEEeecCCC------CCHHHHHHHHHHHCCCEEEEeCCCCC--eE-------------------------CCeee
Confidence 56799999998765 57899999999999999999999742 11 23556
Q ss_pred ecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011650 403 ASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE---KLRKIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~ 464 (480)
..|+.+..+..|+++++++-+.-.+ -.+++.+ ...+.++++.... .++ ..++.|++|.|
T Consensus 60 ~~s~~el~~~vDlvii~vp~~~v~~-v~~~~~~-~g~~~i~~~~~~~-~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 60 YRSVRELPKDVDVIVFVVPPKVGLQ-VAKEAVE-AGFKKLWFQPGAE-SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp BSSGGGSCTTCCEEEECSCHHHHHH-HHHHHHH-TTCCEEEECTTSC-CHHHHHHHHHHTCEEEC
T ss_pred cCCHHHhCCCCCEEEEEeCHHHHHH-HHHHHHH-cCCCEEEEcCccH-HHHHHHHHHHCCCEEEc
Confidence 6788888889999999999433222 2233434 3445578887653 433 34467998865
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00069 Score=65.62 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+.. .. .+.+.+. ++++...++|
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------~~--~~~~~~~-~~~~l~~~aD 189 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQ--QPASITVTNRTFAKAEQLAELV------------AA--YGEVKAQ-AFEQLKQSYD 189 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--CCSEEEEEESSHHHHHHHHHHH------------GG--GSCEEEE-EGGGCCSCEE
T ss_pred CEEEEECchHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHh------------hc--cCCeeEe-eHHHhcCCCC
Confidence 4799999999999999999998 85 9999999999988776420 00 0123332 3344336899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
+||-|+|.....+ .+.+. ...++++.+|++.+..|.. |..+
T Consensus 190 iIInaTp~gm~~~------~~~l~---------~~~l~~~~~V~DlvY~P~~-T~ll 230 (281)
T 3o8q_A 190 VIINSTSASLDGE------LPAID---------PVIFSSRSVCYDMMYGKGY-TVFN 230 (281)
T ss_dssp EEEECSCCCC----------CSCC---------GGGEEEEEEEEESCCCSSC-CHHH
T ss_pred EEEEcCcCCCCCC------CCCCC---------HHHhCcCCEEEEecCCCcc-CHHH
Confidence 9999988653210 11110 1345678888888877644 4444
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.002 Score=64.07 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=75.1
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||....+ .. ..+
T Consensus 145 ~l~gktvgIiGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~------------------------~~~ 189 (343)
T 2yq5_A 145 EIYNLTVGLIGVG----------HIGSAVAEIFSAMGAKVIAYDVAYNPE-FE------------------------PFL 189 (343)
T ss_dssp CGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCGG-GT------------------------TTC
T ss_pred ccCCCeEEEEecC----------HHHHHHHHHHhhCCCEEEEECCChhhh-hh------------------------ccc
Confidence 4578999999984 478899999999999999999987542 11 113
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+. +++++++.+|+|+++++. ++-+.+--.+....|++.+++||+-+ +.|.+.+.
T Consensus 190 ~~~-~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~ 247 (343)
T 2yq5_A 190 TYT-DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALI 247 (343)
T ss_dssp EEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHH
T ss_pred ccc-CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHH
Confidence 333 899999999999999996 34444333456678988889999975 66765443
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.005 Score=63.65 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=68.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH----HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV----PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~----~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||.|||+|..|.+.|..|.++ |++|+++|.++ ...+.|.+...+ +....+.++.+.
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~~gi~-----------------~~~g~~~~~~~~ 70 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKL--GAIVTVNDGKPFDENPTAQSLLEEGIK-----------------VVCGSHPLELLD 70 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHT--TCEEEEEESSCGGGCHHHHHHHHTTCE-----------------EEESCCCGGGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCCcccCChHHHHHHhCCCE-----------------EEECCChHHhhc
Confidence 4899999999999999999998 99999999854 233444432111 222233333346
Q ss_pred c-CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHH---------HHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 78 E-ANIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 78 ~-aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+ +|+||++..-|.+ .|. +..+.+ ++...+.+..+|-+..|..-+||.. +..+|++.+
T Consensus 71 ~~~d~vv~spgi~~~--------~p~---~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 138 (451)
T 3lk7_A 71 EDFCYMIKNPGIPYN--------NPM---VKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG 138 (451)
T ss_dssp SCEEEEEECTTSCTT--------SHH---HHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCcCCCC--------Chh---HHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 6 8999887543321 232 222222 1222223457777777776666555 567777653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0005 Score=64.35 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=48.6
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||+|.|.| .|.+|..++..|++. | ++|+++++++++.+.+......+.. ..++-..++++++++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~--G~~~V~~~~R~~~~~~~~~~~~~~~~~------------~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK--QTIKQTLFARQPAKIHKPYPTNSQIIM------------GDVLNHAALKQAMQG 88 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC--TTEEEEEEESSGGGSCSSCCTTEEEEE------------CCTTCHHHHHHHHTT
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC--CCceEEEEEcChhhhcccccCCcEEEE------------ecCCCHHHHHHHhcC
Confidence 45788998 699999999999998 8 8999999998764432211100000 011101233456788
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+||.|.+.
T Consensus 89 ~D~vv~~a~~ 98 (236)
T 3qvo_A 89 QDIVYANLTG 98 (236)
T ss_dssp CSEEEEECCS
T ss_pred CCEEEEcCCC
Confidence 9999988753
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0027 Score=62.97 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|.+.|.+|.+|||...... +
T Consensus 160 ~~l~g~~vgIIG~G----------~iG~~vA~~l~~~G~~V~~~dr~~~~~~---------------------------g 202 (333)
T 3ba1_A 160 TKFSGKRVGIIGLG----------RIGLAVAERAEAFDCPISYFSRSKKPNT---------------------------N 202 (333)
T ss_dssp CCCTTCCEEEECCS----------HHHHHHHHHHHTTTCCEEEECSSCCTTC---------------------------C
T ss_pred cccCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCCchhcc---------------------------C
Confidence 46789999999984 4889999999999999999999754310 2
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
+....+++++++++|+|+++++.. +.+++--+++...|++..+|+|+-+-
T Consensus 203 ~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG 253 (333)
T 3ba1_A 203 YTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRG 253 (333)
T ss_dssp SEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCG
T ss_pred ceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 234568899999999999999874 56664324556778877799998763
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0022 Score=67.70 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|.+.|.+|.+|||....+. ...+ +
T Consensus 138 ~~l~g~~vgIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~----------------------g 184 (529)
T 1ygy_A 138 TEIFGKTVGVVGLG----------RIGQLVAQRIAAFGAYVVAYDPYVSPAR-AAQL----------------------G 184 (529)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCHHH-HHHH----------------------T
T ss_pred cccCCCEEEEEeeC----------HHHHHHHHHHHhCCCEEEEECCCCChhH-HHhc----------------------C
Confidence 35789999999984 3788899999999999999999875433 2222 2
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEK 454 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~ 454 (480)
+... +++++++.+|+|+++++.. +.+++--+.+...|++..+|+|+-. +.+.+.
T Consensus 185 ~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~a 241 (529)
T 1ygy_A 185 IELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241 (529)
T ss_dssp CEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHH
T ss_pred cEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHH
Confidence 3344 7889999999999999987 6666533456778888789999865 455433
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0022 Score=62.27 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=48.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|+|+ |.||..++..+.+. |++ .++++|+.+. +. .. .++.+..+++++.. .
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~--g~~-~V~~V~p~~~-----g~-~~--------------~G~~vy~sl~el~~~~~ 64 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY--GTK-MVGGVTPGKG-----GT-TH--------------LGLPVFNTVREAVAATG 64 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCe-EEEEeCCCcc-----cc-ee--------------CCeeccCCHHHHhhcCC
Confidence 58999998 99999999999887 888 4455555321 10 00 24677888888777 8
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|++++|+|.+
T Consensus 65 ~D~viI~tP~~ 75 (288)
T 2nu8_A 65 ATASVIYVPAP 75 (288)
T ss_dssp CCEEEECCCGG
T ss_pred CCEEEEecCHH
Confidence 99999999854
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0005 Score=63.41 Aligned_cols=104 Identities=11% Similarity=0.182 Sum_probs=61.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhhcC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~a 79 (480)
|||.|.| .|.+|..++..|+++ |++|+++++++++.+.+ .+ ..+.. +.+.- ..++.++++++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-~~-~~~~~------------~D~~d~~~~~~~~~~~~ 64 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT--DYQIYAGARKVEQVPQY-NN-VKAVH------------FDVDWTPEEMAKQLHGM 64 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS--SCEEEEEESSGGGSCCC-TT-EEEEE------------CCTTSCHHHHHTTTTTC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCccchhhc-CC-ceEEE------------ecccCCHHHHHHHHcCC
Confidence 7999999 799999999999998 99999999998654322 00 00000 11100 11234456789
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+||-|....... ....++......++...+. ..+.+|..+|
T Consensus 65 d~vi~~ag~~~~~-----~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS 106 (219)
T 3dqp_A 65 DAIINVSGSGGKS-----LLKVDLYGAVKLMQAAEKA-EVKRFILLST 106 (219)
T ss_dssp SEEEECCCCTTSS-----CCCCCCHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CEEEECCcCCCCC-----cEeEeHHHHHHHHHHHHHh-CCCEEEEECc
Confidence 9999998654221 1133444444444444332 2235554444
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0037 Score=61.39 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||...... ...+ +
T Consensus 138 ~~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g 184 (313)
T 2ekl_A 138 LELAGKTIGIVGFG----------RIGTKVGIIANAMGMKVLAYDILDIREK-AEKI----------------------N 184 (313)
T ss_dssp CCCTTCEEEEESCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHT----------------------T
T ss_pred CCCCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCCcchhH-HHhc----------------------C
Confidence 35789999999974 4788999999999999999999876642 2222 2
Q ss_pred eEEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
+.+ .++++.++.+|+|+++++... .+++--+.....|++..+++|+-+ +.+.+
T Consensus 185 ~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~ 240 (313)
T 2ekl_A 185 AKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGK 240 (313)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHH
T ss_pred cee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHH
Confidence 333 378899999999999998743 554322456678888889999865 55644
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0043 Score=58.68 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=26.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEE-EeC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDI 34 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~ 34 (480)
|||+|+|+ |.||..++..+... +++++.+ +|+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDLTLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTCEEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEcc
Confidence 79999996 99999999988754 5888874 554
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0026 Score=62.77 Aligned_cols=103 Identities=8% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+||+.....+. ...
T Consensus 133 ~~l~gktvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------------------~~~ 178 (324)
T 3evt_A 133 STLTGQQLLIYGTG----------QIGQSLAAKASALGMHVIGVNTTGHPADH------------------------FHE 178 (324)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSCCCCTT------------------------CSE
T ss_pred ccccCCeEEEECcC----------HHHHHHHHHHHhCCCEEEEECCCcchhHh------------------------Hhh
Confidence 46789999999983 47899999999999999999987543211 011
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....++++.++.+|+|+++++. ++-+++--.+..+.|++.+++||+-+ +.+.+.+.
T Consensus 179 ~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~ 238 (324)
T 3evt_A 179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALM 238 (324)
T ss_dssp EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHH
T ss_pred ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHH
Confidence 22245789999999999999885 45555433566778988889999875 66655443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0045 Score=59.88 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=55.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEec--CHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFST--DVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (480)
.++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+. +-.......+...+ ++.+.+.+
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~-----------~~~~~~~~~i~~~~~~~l~~~l~~ 194 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALADV-----------INNAVGREAVVGVDARGIEDVIAA 194 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSHHHHHHHHHH-----------HHHHHTSCCEEEECSTTHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHH-----------HHhhcCCceEEEcCHHHHHHHHhc
Confidence 4789999999999999999998 87 799999999998877541 00000011244444 67777889
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
+|+||-|+|..
T Consensus 195 ~DiVInaTp~G 205 (283)
T 3jyo_A 195 ADGVVNATPMG 205 (283)
T ss_dssp SSEEEECSSTT
T ss_pred CCEEEECCCCC
Confidence 99999998753
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0038 Score=59.71 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=55.0
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.| .+|.++|..|... |.+|+++++. |.++++.++.||
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~--gAtVtv~~~~---------------------------------t~~L~~~~~~AD 195 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNR--NYTVSVCHSK---------------------------------TKDIGSMTRSSK 195 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHHSS
T ss_pred CEEEEEcCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------cccHHHhhccCC
Confidence 479999987 5899999999998 8999999752 245667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|..- . ...+++|++||+.+
T Consensus 196 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvg 222 (276)
T 3ngx_A 196 IVVVAVGRPGFL---------N-----------REMVTPGSVVIDVG 222 (276)
T ss_dssp EEEECSSCTTCB---------C-----------GGGCCTTCEEEECC
T ss_pred EEEECCCCCccc---------c-----------HhhccCCcEEEEec
Confidence 999999876321 1 13468899998744
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0029 Score=65.54 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=64.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|..+|..|+.. |.+|+++|+++.+.+..... ... ..+.++++..+|+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~~-------------------g~d-v~~lee~~~~aDv 323 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATME-------------------GLQ-VLTLEDVVSEADI 323 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCE-ECCGGGTTTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-------------------CCc-cCCHHHHHHhcCE
Confidence 4689999999999999999998 99999999999876654431 122 2456677889999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
++.+..++.- .+ ......++++.+|++.+-
T Consensus 324 Vi~atG~~~v---------l~--------~e~l~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 324 FVTTTGNKDI---------IM--------LDHMKKMKNNAIVCNIGH 353 (488)
T ss_dssp EEECSSCSCS---------BC--------HHHHTTSCTTEEEEESSS
T ss_pred EEeCCCChhh---------hh--------HHHHHhcCCCeEEEEcCC
Confidence 9988764311 11 123456788888887653
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00046 Score=64.08 Aligned_cols=67 Identities=18% Similarity=0.363 Sum_probs=44.4
Q ss_pred ceEEEECCChhHHHHHHH--HHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAV--IALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~--La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++|+|||+|.+|..++.. +... |++++ ++|.|++++.....+ -.+...+++++.++.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~--g~~iVg~~D~dp~k~g~~i~g------------------v~V~~~~dl~eli~~ 145 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN--NTKISMAFDINESKIGTEVGG------------------VPVYNLDDLEQHVKD 145 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC--------CCEEEEEESCTTTTTCEETT------------------EEEEEGGGHHHHCSS
T ss_pred CEEEEEccCHHHHHHHHHHhcccC--CcEEEEEEeCCHHHHHhHhcC------------------CeeechhhHHHHHHh
Confidence 579999999999999994 3333 77766 579998765432211 013345677777765
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
.|++++|+|+
T Consensus 146 ~D~ViIAvPs 155 (215)
T 2vt3_A 146 ESVAILTVPA 155 (215)
T ss_dssp CCEEEECSCH
T ss_pred CCEEEEecCc
Confidence 6999999884
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.002 Score=62.24 Aligned_cols=108 Identities=8% Similarity=0.013 Sum_probs=75.6
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....++..|.+.|.+|.+||+.....+.... .++...+
T Consensus 2 ~~I~iiG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~ 49 (287)
T 3pdu_A 2 TTYGFLGLGI----------MGGPMAANLVRAGFDVTVWNRNPAKCAPLVA----------------------LGARQAS 49 (287)
T ss_dssp CCEEEECCST----------THHHHHHHHHHHTCCEEEECSSGGGGHHHHH----------------------HTCEECS
T ss_pred CeEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence 3799999754 8899999999999999999986544222221 2356778
Q ss_pred ChhhhcccCcEEEEeecCc-ccccccH--HHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011650 405 DAYEATKDSHGVCILTEWD-EFKNLDY--QKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~-~~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+ ..++.-. +.+...+++..+|+|........ .+.+.|..|..
T Consensus 50 ~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~ 118 (287)
T 3pdu_A 50 SPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLE 118 (287)
T ss_dssp CHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999876 3332110 23445566667999998865431 23345777754
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0033 Score=63.99 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+|||..... ...
T Consensus 141 ~el~gktlGiIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------------------~~~ 184 (404)
T 1sc6_A 141 FEARGKKLGIIGYG----------HIGTQLGILAESLGMYVYFYDIENKLP--------------------------LGN 184 (404)
T ss_dssp CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCC--------------------------CTT
T ss_pred cccCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEEcCCchhc--------------------------cCC
Confidence 35789999999984 478899999999999999999964321 012
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHH
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEK 454 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~ 454 (480)
+....++++.++.+|+|+++++.. +.+++--+.....|++..++||+-+ +.+.+.
T Consensus 185 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~a 242 (404)
T 1sc6_A 185 ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 242 (404)
T ss_dssp CEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHH
T ss_pred ceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHH
Confidence 345668999999999999999884 5555432456688998889999866 556543
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0048 Score=61.20 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=33.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eC--CHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI--SVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~--~~~~v~~l~~ 44 (480)
+||||+|.|++|.-++..+..+ ++.+|.++ |+ +.+....+.+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-~~vevvaI~d~~~~~~~~a~l~~ 48 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-GKVDIVAINDPFIDLNYMVYMFQ 48 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CSSEEEEEECSSSCHHHHHHHHH
T ss_pred eEEEEEccCHHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHHhh
Confidence 4999999999999999998876 57887765 53 6777666554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0042 Score=61.62 Aligned_cols=101 Identities=11% Similarity=0.177 Sum_probs=76.4
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|..-|.+|.+|||........ ..
T Consensus 137 ~~l~g~tvGIiG~G----------~IG~~va~~~~~fg~~v~~~d~~~~~~~~~------------------------~~ 182 (334)
T 3kb6_A 137 RELNRLTLGVIGTG----------RIGSRVAMYGLAFGMKVLCYDVVKREDLKE------------------------KG 182 (334)
T ss_dssp CCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHHHH------------------------TT
T ss_pred ceecCcEEEEECcc----------hHHHHHHHhhcccCceeeecCCccchhhhh------------------------cC
Confidence 35678999999974 478899999999999999999986543221 11
Q ss_pred eEEecChhhhcccCcEEEEeecC-ccccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+. ..++++.++.+|+|+++++. ++-++ ++. +..+.|++.+++|.+-+ ++|.+.+-
T Consensus 183 ~~-~~~l~ell~~sDivslh~Plt~~T~~li~~-~~l~~mk~~a~lIN~aRG~iVde~aL~ 241 (334)
T 3kb6_A 183 CV-YTSLDELLKESDVISLHVPYTKETHHMINE-ERISLMKDGVYLINTARGKVVDTDALY 241 (334)
T ss_dssp CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCH-HHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCH-HHHhhcCCCeEEEecCccccccHHHHH
Confidence 23 35789999999999999987 55555 454 45578988888998865 78876554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0045 Score=64.47 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=83.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|+.. ....++..|.++|++|.+||......+.....+ ..-..+..+
T Consensus 4 ~~kIgiIGlG~----------MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g-----------------~~g~~i~~~ 56 (484)
T 4gwg_A 4 QADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE-----------------AKGTKVVGA 56 (484)
T ss_dssp CBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT-----------------TTTSSCEEC
T ss_pred CCEEEEEChhH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcc-----------------cCCCceecc
Confidence 45899999865 899999999999999999998654432211110 000134456
Q ss_pred cChhhhcc---cCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCCC
Q 011650 404 SDAYEATK---DSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIGKPL 469 (480)
Q Consensus 404 ~~~~~a~~---~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~~ 469 (480)
.++.++++ ++|+|+++++.+ ..++ -.+.+...+++..+|||+.+.... +.+.+.|+.|.+.+...
T Consensus 57 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG 131 (484)
T 4gwg_A 57 QSLKEMVSKLKKPRRIILLVKAGQAVDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG 131 (484)
T ss_dssp SSHHHHHHTBCSSCEEEECSCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHhhccCCCEEEEecCChHHHHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence 78888776 599999999986 4433 245777778777799999998853 23446799998876533
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0038 Score=63.54 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|.+|.+|||.-... ....
T Consensus 153 el~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~yd~~~~~~--------------------------~~~~ 196 (416)
T 3k5p_A 153 EVRGKTLGIVGYG----------NIGSQVGNLAESLGMTVRYYDTSDKLQ--------------------------YGNV 196 (416)
T ss_dssp CSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECTTCCCC--------------------------BTTB
T ss_pred cCCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCcchhc--------------------------ccCc
Confidence 4678999999984 478899999999999999999963211 0123
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
....++++.++.+|+|+++++. ++-+++--.+....|++.+++||+-+ +.|.+.+
T Consensus 197 ~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL 254 (416)
T 3k5p_A 197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEAL 254 (416)
T ss_dssp EECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHH
T ss_pred EecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHH
Confidence 4567899999999999999987 44444333456678998889999865 5665443
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0031 Score=62.37 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=66.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcC-------CCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEec-
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKC-------PSIEVAV-VDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFST- 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~-------~G~~V~~-~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~- 70 (480)
|+||+|||+|.||..++..|.++. ++.+|++ +|+++.+.+. ..+.+.+.. ...+ .+++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~----------id~~~~~~~~~~~~--~~~~~ 69 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD----------FSLVEALRMKRETG--MLRDD 69 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS----------CCHHHHHHHHHHHS--SCSBC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc----------cCHHHHHhhhccCc--cccCC
Confidence 789999999999999999987641 3566665 5766433211 001111100 0001 1233
Q ss_pred -CHHHHhh--cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcc-cHHHHHHHHHhh
Q 011650 71 -DVEKHVR--EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK-TAEAIEKILMHN 144 (480)
Q Consensus 71 -d~~~a~~--~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~~l~~~ 144 (480)
|+++.+. +.|+|++|+|+..+. .+ +.+.+...+..|.-|+...+-|.. ..+++.+..++.
T Consensus 70 ~d~~~ll~~~~iDvVv~~tp~~~h~-------------~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~ 133 (327)
T 3do5_A 70 AKAIEVVRSADYDVLIEASVTRVDG-------------GE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERN 133 (327)
T ss_dssp CCHHHHHHHSCCSEEEECCCCC-----------------C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHhcCCCCCEEEECCCCcccc-------------hh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhh
Confidence 7777664 589999998865321 11 344455667788888876554433 223444444443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0024 Score=62.32 Aligned_cols=109 Identities=11% Similarity=0.026 Sum_probs=74.4
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE-
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV- 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 402 (480)
..+|+|+|+.. ....++..|.+.|.+|.+||+.....+..... +...
T Consensus 7 ~~~I~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g~~~~ 54 (303)
T 3g0o_A 7 DFHVGIVGLGS----------MGMGAARSCLRAGLSTWGADLNPQACANLLAE----------------------GACGA 54 (303)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----------------------TCSEE
T ss_pred CCeEEEECCCH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc----------------------CCccc
Confidence 46899999865 89999999999999999999864332211111 2233
Q ss_pred ecChhhhcccCcEEEEeecCcc-ccccc--HHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011650 403 ASDAYEATKDSHGVCILTEWDE-FKNLD--YQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~ 464 (480)
..++.++++++|+|+++++.+. .+..- .+.+...+++..+|+|+.+..... .+.+.|..|..
T Consensus 55 ~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~ 125 (303)
T 3g0o_A 55 AASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD 125 (303)
T ss_dssp ESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 6788999999999999998753 22210 023345566667999998865421 23345777765
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0028 Score=57.18 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=48.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|.|.|. |.+|..++..|+++ |++|+++++++++.+.+......+.. ..+.-..++.++++++|
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~~~~~~~~~~~~~d 69 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVV------------GDVLQAADVDKTVAGQD 69 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEEE------------SCTTSHHHHHHHHTTCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--CCeEEEEEeChhhcccccCCceEEEE------------ecCCCHHHHHHHHcCCC
Confidence 68999997 99999999999998 99999999998654322111000000 00000112345577899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||-|...
T Consensus 70 ~vi~~a~~ 77 (206)
T 1hdo_A 70 AVIVLLGT 77 (206)
T ss_dssp EEEECCCC
T ss_pred EEEECccC
Confidence 99998764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0031 Score=62.79 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=61.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHc-CCCCCCCCC-hHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWNS-DQLPIYEPG-LEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~-g~~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+||||+|+|.+|..++..|..+ ++++|.++ |.+++....+.+ .....+..- ...-+.....+.+.+..+..+...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~-~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~ 80 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQ-DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE 80 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc
Confidence 35999999999999999998875 46786654 666665554443 111111110 011110001123444455566567
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHH-HhhCCCCcEEEE
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ADVSKSDKIVVE 125 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~ 125 (480)
++|+||.|+|... + .+.. ..+++.|+.||+
T Consensus 81 ~vDiV~eatg~~~-------------s-----~~~a~~~~l~aG~~VI~ 111 (343)
T 2yyy_A 81 DADIVVDGAPKKI-------------G-----KQNLENIYKPHKVKAIL 111 (343)
T ss_dssp GCSEEEECCCTTH-------------H-----HHHHHHTTTTTTCEEEE
T ss_pred CCCEEEECCCccc-------------c-----HHHHHHHHHHCCCEEEE
Confidence 9999999976421 0 1222 367888887775
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0047 Score=60.39 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=72.5
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|.+|.+|||... +. . .
T Consensus 121 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~dr~~~-~~--~-------------------------~ 162 (303)
T 1qp8_A 121 LIQGEKVAVLGLG----------EIGTRVGKILAALGAQVRGFSRTPK-EG--P-------------------------W 162 (303)
T ss_dssp CCTTCEEEEESCS----------THHHHHHHHHHHTTCEEEEECSSCC-CS--S-------------------------S
T ss_pred CCCCCEEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCcc-cc--C-------------------------c
Confidence 5788999999973 5888999999999999999998754 11 0 1
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
....++++.++.+|+|+++++.. +.+++=-++....|++..+++|+-+ +.+.+
T Consensus 163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~ 218 (303)
T 1qp8_A 163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRD 218 (303)
T ss_dssp CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHH
Confidence 12357889999999999999885 4555432466788988889999976 45643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0015 Score=60.77 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=54.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQL-PIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+|.|.|. |.+|..++..|+++ |++|+++++++++.+.+..... .+.. +.++ .++.+++.++
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~------------~Dl~--~~~~~~~~~~ 85 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNEEQGPELRERGASDIVV------------ANLE--EDFSHAFASI 85 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHTTCSEEEE------------CCTT--SCCGGGGTTC
T ss_pred CeEEEECCCChHHHHHHHHHHhC--CCeEEEEECChHHHHHHHhCCCceEEE------------cccH--HHHHHHHcCC
Confidence 78999997 99999999999998 9999999999998877765322 1111 1111 4456668899
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||-+...
T Consensus 86 D~vi~~ag~ 94 (236)
T 3e8x_A 86 DAVVFAAGS 94 (236)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999764
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0022 Score=60.70 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=55.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|+++|+|.||..++.. . ++++. +|+ +++ +.. +..+++|+++.+.++|
T Consensus 13 ~rV~i~G~GaIG~~v~~~---~--~leLv~v~~---~k~-----gel-----------------gv~a~~d~d~lla~pD 62 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL---G--NFEKIYAYD---RIS-----KDI-----------------PGVVRLDEFQVPSDVS 62 (253)
T ss_dssp CEEEEECCSHHHHHHHHH---S--CCSEEEEEC---SSC-----CCC-----------------SSSEECSSCCCCTTCC
T ss_pred ceEEEECcCHHHHHHHhc---C--CcEEEEEEe---ccc-----ccc-----------------CceeeCCHHHHhhCCC
Confidence 899999999999998887 3 67765 455 221 110 2346788887778999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+|+.|-+. ..+.+.+.+.|+.|.-|+..|.
T Consensus 63 ~VVe~A~~------------------~av~e~~~~iL~aG~dvv~~S~ 92 (253)
T 1j5p_A 63 TVVECASP------------------EAVKEYSLQILKNPVNYIIIST 92 (253)
T ss_dssp EEEECSCH------------------HHHHHHHHHHTTSSSEEEECCG
T ss_pred EEEECCCH------------------HHHHHHHHHHHHCCCCEEEcCh
Confidence 99999531 2223346778888888877664
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0066 Score=58.78 Aligned_cols=72 Identities=17% Similarity=0.340 Sum_probs=56.0
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |.+|++++.. +.++++.++.||
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 210 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSK---------------------------------TAHLDEEVNKGD 210 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHhC--CCeEEEEECC---------------------------------cccHHHHhccCC
Confidence 4799999995 899999999998 8999999732 345667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|-.- . ...+++|.+||+.+.
T Consensus 211 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDVgi 238 (301)
T 1a4i_A 211 ILVVATGQPEMV---------K-----------GEWIKPGAIVIDCGI 238 (301)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred EEEECCCCcccC---------C-----------HHHcCCCcEEEEccC
Confidence 999999876311 1 134678999998654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.004 Score=63.45 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=36.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVPRINAWNS 44 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~ 44 (480)
||||.|+|+|.+|..++..|++. | .+|+++|+++++.+++.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~--g~~~~~V~v~~r~~~~~~~la~ 45 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN--REVFSHITLASRTLSKCQEIAQ 45 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC--TTTCCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEEECCHHHHHHHHH
Confidence 78999999999999999999987 6 389999999999887654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0046 Score=58.62 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
++|.|||+|.+|..+|..|+.. |. +++++|.+.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence 4799999999999999999998 76 899999987
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0027 Score=62.70 Aligned_cols=101 Identities=11% Similarity=0.065 Sum_probs=73.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+ ..-...+++.|...|.+|.+||+....... ....
T Consensus 137 ~l~g~tvGIIGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------------------~~~~ 182 (324)
T 3hg7_A 137 GLKGRTLLILGT----------GSIGQHIAHTGKHFGMKVLGVSRSGRERAG------------------------FDQV 182 (324)
T ss_dssp CSTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCCCTT------------------------CSEE
T ss_pred ccccceEEEEEE----------CHHHHHHHHHHHhCCCEEEEEcCChHHhhh------------------------hhcc
Confidence 468999999998 457899999999999999999987533210 0112
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
....++++.++.+|+|+++++. ++-+++--.+....|++.+++||+-+ +.|.+.+
T Consensus 183 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL 240 (324)
T 3hg7_A 183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDL 240 (324)
T ss_dssp ECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHH
T ss_pred cccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHH
Confidence 2246889999999999999885 34444322345677888889999965 6675543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0056 Score=63.80 Aligned_cols=116 Identities=14% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++.++|+|+|+. +....++..|.+.|.+|.+||......+ +.... . -.+
T Consensus 12 ~~~~~~IgvIGlG----------~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~-----------------~--~~g 62 (480)
T 2zyd_A 12 HMSKQQIGVVGMA----------VMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN-----------------P--GKK 62 (480)
T ss_dssp ---CBSEEEECCS----------HHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS-----------------T--TSC
T ss_pred ccCCCeEEEEccH----------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC-----------------C--CCC
Confidence 3467899999985 4899999999999999999998543321 11110 0 025
Q ss_pred eEEecChhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011650 400 VIVASDAYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSIG 466 (480)
Q Consensus 400 ~~~~~~~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG 466 (480)
+....++.+++++ +|+|+++++.+ ..++. .+++...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 63 i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v-l~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~p 138 (480)
T 2zyd_A 63 LVPYYTVKEFVESLETPRRILLMVKAGAGTDAA-IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTG 138 (480)
T ss_dssp EEECSSHHHHHHTBCSSCEEEECSCSSSHHHHH-HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCc
Confidence 6777889998887 99999999985 45542 346666776666999999987532 2334588886654
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0016 Score=63.94 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=49.9
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-E--e--cCHHHH
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-F--S--TDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~--t--~d~~~a 75 (480)
.++.|||.|. +|.++|..|... |.+|+++|++..+.-..... +... ....+ + + .++++.
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~--gAtVtv~nR~~~~l~~ra~~---la~~----------~~~~t~~~~t~~~~L~e~ 242 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQKFTRGES---LKLN----------KHHVEDLGEYSEDLLKKC 242 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEEEEESCCC---SSCC----------CCEEEEEEECCHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHHHC--CCEEEEEeCchHHHHhHHHH---Hhhh----------cccccccccccHhHHHHH
Confidence 4799999996 599999999988 88999999974332111110 0000 00111 1 2 578888
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+..||+||.+++.|
T Consensus 243 l~~ADIVIsAtg~p 256 (320)
T 1edz_A 243 SLDSDVVITGVPSE 256 (320)
T ss_dssp HHHCSEEEECCCCT
T ss_pred hccCCEEEECCCCC
Confidence 99999999999876
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=62.79 Aligned_cols=102 Identities=7% Similarity=0.077 Sum_probs=65.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-h-cC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-R-EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~-~a 79 (480)
++|.|+|+|.+|.++|..|++. |.+|++++|++++.+++.+.. .. .+.+.. .++++ + + .+
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~--G~~v~v~~R~~~~a~~l~~~~------------~~--~~~~~~-~~~~~-~~~~~~ 181 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQA-VSMDS-IPLQTY 181 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEE-EEGGG-CCCSCC
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc------------cc--cCCeEE-eeHHH-hccCCC
Confidence 5799999999999999999998 899999999999888776410 00 012322 23343 4 3 89
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+||-|+|.+...+ .+++. . ..++++.+|++.++.|...+..
T Consensus 182 DivIn~t~~~~~~~------~~~i~------~---~~l~~~~~v~D~~y~p~~~t~l 223 (272)
T 1p77_A 182 DLVINATSAGLSGG------TASVD------A---EILKLGSAFYDMQYAKGTDTPF 223 (272)
T ss_dssp SEEEECCCC-------------CCC------H---HHHHHCSCEEESCCCTTSCCHH
T ss_pred CEEEECCCCCCCCC------CCCCC------H---HHcCCCCEEEEeeCCCCcCCHH
Confidence 99999988643210 01110 0 1123567888888876652443
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.012 Score=60.05 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC
Q 011650 314 VVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS 393 (480)
Q Consensus 314 ~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (480)
+.+..+..+.+++|+|+|+. .-...+++.|...|++|.+|||..........
T Consensus 201 i~ratg~~L~GktVgIiG~G----------~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~------------------ 252 (436)
T 3h9u_A 201 IKRATDVMIAGKTACVCGYG----------DVGKGCAAALRGFGARVVVTEVDPINALQAAM------------------ 252 (436)
T ss_dssp HHHHHCCCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH------------------
T ss_pred HHHhcCCcccCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCChhhhHHHHH------------------
Confidence 33444667899999999953 36889999999999999999996432211111
Q ss_pred CCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEEecCCC
Q 011650 394 PSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYSIGKPL 469 (480)
Q Consensus 394 ~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG~~~ 469 (480)
.++.+ .+++++++++|++++.+....+ ++. +..+.|++.++|++.-+- +|.+.+.+......++-...
T Consensus 253 ----~G~~~-~sL~eal~~ADVVilt~gt~~i--I~~-e~l~~MK~gAIVINvgRg~vEID~~~L~~~~~~~~~ir~~v 323 (436)
T 3h9u_A 253 ----EGYQV-LLVEDVVEEAHIFVTTTGNDDI--ITS-EHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV 323 (436)
T ss_dssp ----TTCEE-CCHHHHTTTCSEEEECSSCSCS--BCT-TTGGGCCTTEEEEECSSSGGGBCHHHHHHHCSEEEEEETTE
T ss_pred ----hCCee-cCHHHHHhhCCEEEECCCCcCc--cCH-HHHhhcCCCcEEEEeCCCCCccCHHHHHhhcCceEeecCCc
Confidence 12333 4899999999999986654443 332 345678888899998652 56677776666666664333
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0062 Score=59.02 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=54.4
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH--HHhhc
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE--KHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~--~a~~~ 78 (480)
.++.|||.|. +|.++|..|... |.+|+++++.. .+++ +.++.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~~~~T---------------------------------~~l~l~~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKE--NATVTIVHSGT---------------------------------STEDMIDYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTTS---------------------------------CHHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCC---------------------------------CCchhhhhhcc
Confidence 4799999876 899999999998 89999998621 1233 56899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
||+||.+++.|..- . ...++++++||+.++
T Consensus 211 ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi 240 (300)
T 4a26_A 211 ADIVIAAMGQPGYV---------K-----------GEWIKEGAAVVDVGT 240 (300)
T ss_dssp CSEEEECSCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred CCEEEECCCCCCCC---------c-----------HHhcCCCcEEEEEec
Confidence 99999999876321 1 134688999987543
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.012 Score=56.51 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=51.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|||+|.+|.+++..|++. |. +|++++|+.++.+++.+.. + ..+..++. +.++|
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~--G~~~i~v~nRt~~ka~~la~~~-----------------~-~~~~~~~~--~~~~D 177 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY-----------------G-YAYINSLE--NQQAD 177 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH-----------------T-CEEESCCT--TCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc-----------------C-Cccchhhh--cccCC
Confidence 4799999999999999999998 76 8999999999988776410 0 12222322 46899
Q ss_pred EEEEEccCCC
Q 011650 81 IVFVSVNTPT 90 (480)
Q Consensus 81 vVii~Vptp~ 90 (480)
+||-|+|.+.
T Consensus 178 ivInaTp~gm 187 (271)
T 1npy_A 178 ILVNVTSIGM 187 (271)
T ss_dssp EEEECSSTTC
T ss_pred EEEECCCCCc
Confidence 9999988654
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0052 Score=60.27 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=78.9
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-eEEEECCCC--ChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA-RLSIYDPQV--PQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
..+|+|+|+.. ....+++.|.+.|+ +|.+||+.. ...+.... .++
T Consensus 24 ~~~I~iIG~G~----------mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~----------------------~g~ 71 (312)
T 3qsg_A 24 AMKLGFIGFGE----------AASAIASGLRQAGAIDMAAYDAASAESWRPRAEE----------------------LGV 71 (312)
T ss_dssp -CEEEEECCSH----------HHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH----------------------TTC
T ss_pred CCEEEEECccH----------HHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH----------------------CCC
Confidence 35899999855 88999999999999 999999853 22111111 245
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhc--CcEEEE
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKI--GFIVYS 464 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~--g~~y~~ 464 (480)
...+++.++++++|+|+++++-+...+ -.+.+...+++..+|+|...+.... .+.+. |..|..
T Consensus 72 ~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd 142 (312)
T 3qsg_A 72 SCKASVAEVAGECDVIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA 142 (312)
T ss_dssp EECSCHHHHHHHCSEEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEeCCHHHHHhcCCEEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence 677899999999999999998877554 2456777777777999998877532 23344 777754
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0032 Score=60.48 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=66.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
+++.|+|+|.+|.++|..|++. |.+|+++++++++.+.+.+.... .+.+.. .+.++.. ..+|
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~--G~~V~v~~R~~~~~~~la~~~~~--------------~~~~~~-~~~~~~~~~~~D 182 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQA-LSMDELEGHEFD 182 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEE-CCSGGGTTCCCS
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHhhc--------------cCCeeE-ecHHHhccCCCC
Confidence 4799999999999999999998 89999999999988777642100 012322 2333322 4899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||-|+|.+...+ .+++. ...++++.+|++.++.|..|
T Consensus 183 ivVn~t~~~~~~~------~~~i~---------~~~l~~~~~v~D~~y~p~~t 220 (271)
T 1nyt_A 183 LIINATSSGISGD------IPAIP---------SSLIHPGIYCYDMFYQKGKT 220 (271)
T ss_dssp EEEECCSCGGGTC------CCCCC---------GGGCCTTCEEEESCCCSSCC
T ss_pred EEEECCCCCCCCC------CCCCC---------HHHcCCCCEEEEeccCCcCC
Confidence 9999987643210 01110 12356788899988876443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0044 Score=60.89 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=75.0
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|.+|.+||+.....+ . + ..
T Consensus 135 ~~l~g~tvGIiG~G----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~--~-~---------------------~~ 180 (315)
T 3pp8_A 135 YTREEFSVGIMGAG----------VLGAKVAESLQAWGFPLRCWSRSRKSWP--G-V---------------------ES 180 (315)
T ss_dssp CCSTTCCEEEECCS----------HHHHHHHHHHHTTTCCEEEEESSCCCCT--T-C---------------------EE
T ss_pred CCcCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEEcCCchhhh--h-h---------------------hh
Confidence 46789999999974 4788999999999999999998654211 0 0 00
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
..-..++++.++.+|+|+++++. ++-+++--.+....|++.+++||+-+ +.|.+.+.
T Consensus 181 ~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~ 240 (315)
T 3pp8_A 181 YVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLL 240 (315)
T ss_dssp EESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred hcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHH
Confidence 11125788999999999999885 45555433566788988889999865 66765443
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0032 Score=54.62 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=73.0
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.++|+|+|++-++ ++.+..+++.|.+.|++|...||....+++ .++..+
T Consensus 13 p~~IavIGas~~~------g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-------------------------~G~~~~ 61 (145)
T 2duw_A 13 TRTIALVGASDKP------DRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-------------------------LGQQGY 61 (145)
T ss_dssp CCCEEEESCCSCT------TSHHHHHHHHHHHHTCCEEEECSSSTTSEE-------------------------TTEECC
T ss_pred CCEEEEECcCCCC------CChHHHHHHHHHHCCCEEEEeCCccccccc-------------------------CCeecc
Confidence 5689999998776 468889999999999999999997521111 235566
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE---KLRKIGFIVYS 464 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~ 464 (480)
.|+.+..+..|+++|+++-+.-.+ -..++.+. ....++++. +.+..+ ..++.|++|.|
T Consensus 62 ~sl~el~~~~Dlvii~vp~~~v~~-v~~~~~~~-g~~~i~i~~-~~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 62 ATLADVPEKVDMVDVFRNSEAAWG-VAQEAIAI-GAKTLWLQL-GVINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp SSTTTCSSCCSEEECCSCSTHHHH-HHHHHHHH-TCCEEECCT-TCCCHHHHHHHHTTTCEEEC
T ss_pred CCHHHcCCCCCEEEEEeCHHHHHH-HHHHHHHc-CCCEEEEcC-ChHHHHHHHHHHHcCCEEEc
Confidence 778887788999999998433222 22334442 334577776 444543 34467999865
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.034 Score=53.85 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=65.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||+|+|+ |.||..++..+.+. |++ .++.+++.+. +. + ..++.+..+++++.. .
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~----~-----------i~G~~vy~sl~el~~~~~ 64 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY--GTK-IVAGVTPGKG-----GM----E-----------VLGVPVYDTVKEAVAHHE 64 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC----E-----------ETTEEEESSHHHHHHHSC
T ss_pred CEEEEECCCCCHHHHHHHHHHHc--CCe-EEEEECCCCC-----Cc----e-----------ECCEEeeCCHHHHhhcCC
Confidence 58999998 99999999999887 888 4455555321 10 0 024677888888777 8
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
+|++++++|.+ ...++++...+. .-..+|+..+.++....+++.+..++.+
T Consensus 65 ~Dv~Ii~vp~~---------------~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~a~~~g 115 (288)
T 1oi7_A 65 VDASIIFVPAP---------------AAADAALEAAHA-GIPLIVLITEGIPTLDMVRAVEEIKALG 115 (288)
T ss_dssp CSEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999998742 234444444442 2233454444444433445666655543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0054 Score=63.02 Aligned_cols=66 Identities=24% Similarity=0.307 Sum_probs=48.1
Q ss_pred eEEEECCChhHHHHHHHHHHc--------CCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALK--------CPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
||+|||+|.||..++..|.++ +++.+|. ++|+++++.+.+.. ...+++|++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------------------~~~~~~d~~ 71 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------------------GLPLTTNPF 71 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------------------TCCEESCTH
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------------------cCcccCCHH
Confidence 699999999999998777531 1355655 57898887665421 134578888
Q ss_pred HHhh--cCCEEEEEccC
Q 011650 74 KHVR--EANIVFVSVNT 88 (480)
Q Consensus 74 ~a~~--~aDvVii~Vpt 88 (480)
+.+. +.|+|++|+|+
T Consensus 72 ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 72 DVVDDPEIDIVVELIGG 88 (444)
T ss_dssp HHHTCTTCCEEEECCCS
T ss_pred HHhcCCCCCEEEEcCCC
Confidence 8775 57999999885
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0079 Score=57.87 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=54.6
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |.+|++++.. +.++++.++.||
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 204 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD 204 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred CEEEEECCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhccCC
Confidence 4799999996 799999999988 8999999632 245667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|.-- . ...+++|.+||+.+
T Consensus 205 IVI~Avg~p~lI---------~-----------~~~vk~GavVIDVg 231 (288)
T 1b0a_A 205 LLIVAVGKPGFI---------P-----------GDWIKEGAIVIDVG 231 (288)
T ss_dssp EEEECSCCTTCB---------C-----------TTTSCTTCEEEECC
T ss_pred EEEECCCCcCcC---------C-----------HHHcCCCcEEEEcc
Confidence 999999876311 0 12357899988743
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0037 Score=62.91 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=73.7
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-...+++.|...|.+|.+|||..... . .
T Consensus 114 g~~l~gktvGIIGlG----------~IG~~vA~~l~a~G~~V~~~d~~~~~~---~-----------------------~ 157 (381)
T 3oet_A 114 GFSLRDRTIGIVGVG----------NVGSRLQTRLEALGIRTLLCDPPRAAR---G-----------------------D 157 (381)
T ss_dssp TCCGGGCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECHHHHHT---T-----------------------C
T ss_pred CCccCCCEEEEEeEC----------HHHHHHHHHHHHCCCEEEEECCChHHh---c-----------------------c
Confidence 457889999999983 478999999999999999999942111 0 0
Q ss_pred ceEEecChhhhcccCcEEEEeecCc-c----ccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWD-E----FKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~-~----~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.. ...++++.++.+|+|+++++.. + -++ ++ .+..+.|++.+++||+-+ +.|.+.+.
T Consensus 158 ~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~aRG~vvde~aL~ 221 (381)
T 3oet_A 158 EG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD-ETLIRRLKPGAILINACRGPVVDNAALL 221 (381)
T ss_dssp CS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-HHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred Cc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-HHHHhcCCCCcEEEECCCCcccCHHHHH
Confidence 01 2357899999999999999864 2 233 44 456678888889999865 66765443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0075 Score=58.90 Aligned_cols=111 Identities=8% Similarity=0.011 Sum_probs=76.8
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
....+|+|+|+.. ....+++.|.+.|++|.+||+.....+.... .++.
T Consensus 7 ~~~~~IgiIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~ 54 (306)
T 3l6d_A 7 SFEFDVSVIGLGA----------MGTIMAQVLLKQGKRVAIWNRSPGKAAALVA----------------------AGAH 54 (306)
T ss_dssp CCSCSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHH----------------------HTCE
T ss_pred cCCCeEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------------------CCCe
Confidence 3457899999854 8899999999999999999986433221111 1356
Q ss_pred EecChhhhcccCcEEEEeecCcc-cccc-cHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011650 402 VASDAYEATKDSHGVCILTEWDE-FKNL-DYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSI 465 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~~-~~~~-~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
...++.++++++|+|+++++.+. .++. ..+.+.. +.+..+|+|+...-... .+.+.|..|..-
T Consensus 55 ~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda 125 (306)
T 3l6d_A 55 LCESVKAALSASPATIFVLLDNHATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG 125 (306)
T ss_dssp ECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred ecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence 67899999999999999998764 3331 1013333 34556999998876532 234568888653
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.014 Score=56.12 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=67.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (480)
+++.|+|+|.+|.+++..|++. |. +|++++|++++.+++.+... .+.+.+. ++++.- .++
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~~~---------------~~~~~~~-~~~~l~~~~~ 182 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQA--GPSELVIANRDMAKALALRNELD---------------HSRLRIS-RYEALEGQSF 182 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--CCSEEEEECSCHHHHHHHHHHHC---------------CTTEEEE-CSGGGTTCCC
T ss_pred CEEEEECccHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhc---------------cCCeeEe-eHHHhcccCC
Confidence 4799999999999999999998 85 99999999999888764210 0123322 222311 689
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
|+||-|+|.....+ .+.+. ...++++.+|++....|.. |..+
T Consensus 183 DivInaTp~gm~~~------~~~i~---------~~~l~~~~~V~DlvY~P~~-T~ll 224 (272)
T 3pwz_A 183 DIVVNATSASLTAD------LPPLP---------ADVLGEAALAYELAYGKGL-TPFL 224 (272)
T ss_dssp SEEEECSSGGGGTC------CCCCC---------GGGGTTCSEEEESSCSCCS-CHHH
T ss_pred CEEEECCCCCCCCC------CCCCC---------HHHhCcCCEEEEeecCCCC-CHHH
Confidence 99999987543210 11111 1245678888887766544 4443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0054 Score=59.51 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=48.4
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||+|.|.| .|++|..++..|.++ |++|+++++++...+ +. + ..+. .+.+. ..++.++++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~-~-~~~~------------~~Dl~-~~~~~~~~~~~ 63 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND--GNTPIILTRSIGNKA-IN-D-YEYR------------VSDYT-LEDLINQLNDV 63 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCC-------C-CEEE------------ECCCC-HHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCCCccc-CC-c-eEEE------------Ecccc-HHHHHHhhcCC
Confidence 46899999 699999999999998 999999999854443 33 1 1110 12233 34456667899
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|+||-|...
T Consensus 64 d~Vih~a~~ 72 (311)
T 3m2p_A 64 DAVVHLAAT 72 (311)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcccc
Confidence 999988753
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0074 Score=59.82 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=74.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||..... . ..+ +
T Consensus 143 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~~~-----------------------~ 187 (333)
T 1j4a_A 143 EVRDQVVGVVGTG----------HIGQVFMQIMEGFGAKVITYDIFRNPE-L-EKK-----------------------G 187 (333)
T ss_dssp CGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHH-H-HHT-----------------------T
T ss_pred cCCCCEEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCcchh-H-Hhh-----------------------C
Confidence 4678999999974 478899999999999999999987654 2 111 1
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+.+++++.++.+|+|+++++.. +.+++--+.....|++.+++||+-+ +.+.+.+.
T Consensus 188 ~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~ 246 (333)
T 1j4a_A 188 YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246 (333)
T ss_dssp CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHH
Confidence 23347889999999999999874 4555322456678888889999865 56654443
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0097 Score=58.45 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=76.4
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCC----hhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVP----QEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+|+|+|+.+ -...++..|.+.| .+|.+||+... .++....+. ..+
T Consensus 25 m~IgvIG~G~----------mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~-------------------~~g 75 (317)
T 4ezb_A 25 TTIAFIGFGE----------AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAA-------------------ELG 75 (317)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHH-------------------HTT
T ss_pred CeEEEECccH----------HHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHH-------------------HCC
Confidence 5899999865 8999999999999 99999998641 011111111 012
Q ss_pred eEEec-ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011650 400 VIVAS-DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYS 464 (480)
Q Consensus 400 ~~~~~-~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~ 464 (480)
+ .+ ++.++++++|+|+++++-+...+ ..+.+...+++..+|+|..++... +.+.+.|..|..
T Consensus 76 ~--~~~s~~e~~~~aDvVi~avp~~~~~~-~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d 144 (317)
T 4ezb_A 76 V--EPLDDVAGIACADVVLSLVVGAATKA-VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE 144 (317)
T ss_dssp C--EEESSGGGGGGCSEEEECCCGGGHHH-HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE
T ss_pred C--CCCCHHHHHhcCCEEEEecCCHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 3 45 78899999999999998877554 235666777777799999876643 233455777754
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.013 Score=56.31 Aligned_cols=72 Identities=25% Similarity=0.385 Sum_probs=54.8
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|++++.. |.++++.++.||
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~--gAtVtv~hs~---------------------------------T~~L~~~~~~AD 206 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLG--GCTVTVTHRF---------------------------------TRDLADHVSRAD 206 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHTCS
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------CcCHHHHhccCC
Confidence 4799999765 899999999998 8999998642 235667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+||.+++.|..- . ...+++|.+||+.+.
T Consensus 207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi 234 (286)
T 4a5o_A 207 LVVVAAGKPGLV---------K-----------GEWIKEGAIVIDVGI 234 (286)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCS
T ss_pred EEEECCCCCCCC---------C-----------HHHcCCCeEEEEecc
Confidence 999999876211 1 145688999987543
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.012 Score=56.68 Aligned_cols=71 Identities=25% Similarity=0.369 Sum_probs=54.5
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |..|+++++. |.++++.++.||
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~--gAtVtv~h~~---------------------------------t~~L~~~~~~AD 205 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 205 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhhcCC
Confidence 4799999876 799999999998 8999998742 235667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|..- . ...+++|.+||+.+
T Consensus 206 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDVg 232 (285)
T 3p2o_A 206 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG 232 (285)
T ss_dssp EEEECSSCTTCB---------C-----------GGGSCTTEEEEECC
T ss_pred EEEECCCCCCcC---------C-----------HHHcCCCeEEEEec
Confidence 999999865211 1 14568899888743
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.013 Score=56.35 Aligned_cols=71 Identities=25% Similarity=0.406 Sum_probs=54.3
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|. +|.++|..|... |.+|++.++. |.++++.++.||
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD 206 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 206 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHhcccCC
Confidence 4799999876 799999999998 8899998642 235667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|..- . ...+++|.+||+.+
T Consensus 207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvg 233 (285)
T 3l07_A 207 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG 233 (285)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECC
T ss_pred EEEECCCCCCCC---------C-----------HHHcCCCcEEEEec
Confidence 999999866211 1 13568899988743
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.42 E-value=0.008 Score=59.60 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eC--CHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI--SVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~--~~~~v~~l~ 43 (480)
+||||+|.|++|.-++..|..+ ++.+|.++ |. +.+....+-
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-p~vevvaI~d~~~~~~~~~~ll 47 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-EDVELVAVNDPFITTDYMTYMF 47 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHhh
Confidence 3999999999999999998875 56787765 42 556555543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=61.90 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=80.4
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhh-hhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRD-LQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
..+|+|+|+.. ....++..|.++|++|.+||......+.... . .+ -.++..
T Consensus 10 ~~~IgvIGlG~----------MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~--------~~----------~~gi~~ 61 (497)
T 2p4q_A 10 SADFGLIGLAV----------MGQNLILNAADHGFTVCAYNRTQSKVDHFLANE--------AK----------GKSIIG 61 (497)
T ss_dssp CCSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT--------TT----------TSSEEC
T ss_pred CCCEEEEeeHH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc--------cc----------CCCeEE
Confidence 35899999854 8999999999999999999986543221111 0 00 034666
Q ss_pred ecChhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011650 403 ASDAYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSIG 466 (480)
Q Consensus 403 ~~~~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG 466 (480)
+.++.+++++ +|+|+++++.+ ..++. .+++...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 62 ~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v-l~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~p 134 (497)
T 2p4q_A 62 ATSIEDFISKLKRPRKVMLLVKAGAPVDAL-INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSG 134 (497)
T ss_dssp CSSHHHHHHTSCSSCEEEECCCSSHHHHHH-HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eCCHHHHHhcCCCCCEEEEEcCChHHHHHH-HHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCC
Confidence 7889888877 99999999985 44442 356666776666999999987532 2334588887654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0027 Score=60.94 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=50.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||.|.| .|.+|..++..|++. +|++|+++++++++.+.+......+.. +.+.-..++.++++++|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~~~~~~~~~v~~~~------------~D~~d~~~l~~~~~~~d 67 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEKVPDDWRGKVSVRQ------------LDYFNQESMVEAFKGMD 67 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGGSCGGGBTTBEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHHHHHhhhCCCEEEE------------cCCCCHHHHHHHHhCCC
Confidence 7899999 599999999998874 379999999998765544332111110 11111123455678999
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||.|.+.
T Consensus 68 ~vi~~a~~ 75 (289)
T 3e48_A 68 TVVFIPSI 75 (289)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99998753
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0098 Score=57.50 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=72.9
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+.. -+..+++.|.+.|.+|.+||+.....+.... .++....+
T Consensus 7 ~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~~~ 54 (299)
T 1vpd_A 7 KVGFIGLGI----------MGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------------------AGAETAST 54 (299)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------------TTCEECSS
T ss_pred eEEEECchH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------CCCeecCC
Confidence 899999743 7888999999999999999986432221111 13556678
Q ss_pred hhhhcccCcEEEEeecCcc-cccccH--HHHHhhcCCCCEEEEcCCCCCh--HH----HhhcCcEEEE
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNLDY--QKIYNNMQKPAFVFDGRNILDV--EK----LRKIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~~--~~----~~~~g~~y~~ 464 (480)
+.++++++|+|+++++.+. ++..-. +.+...+++..+|+|..+.... +. +.+.|+.|..
T Consensus 55 ~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~ 122 (299)
T 1vpd_A 55 AKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD 122 (299)
T ss_dssp HHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 8899999999999998654 332110 2345566666799999887642 22 2334777754
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00076 Score=62.43 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=46.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-cC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~a 79 (480)
++|+|||+|.+|..++..+.... |++++ ++|.|+++......+ . .+...+++++.++ +.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~g-v-----------------~V~~~~dl~ell~~~I 141 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRG-G-----------------VIEHVDLLPQRVPGRI 141 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETT-E-----------------EEEEGGGHHHHSTTTC
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcC-C-----------------eeecHHhHHHHHHcCC
Confidence 57999999999999998643333 67765 479988765432211 0 1233567777665 58
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|++++|+|+
T Consensus 142 D~ViIA~Ps 150 (211)
T 2dt5_A 142 EIALLTVPR 150 (211)
T ss_dssp CEEEECSCH
T ss_pred CEEEEeCCc
Confidence 999999985
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.018 Score=60.10 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=69.5
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+++|.|||+|..|.+ +|..|.++ |++|+++|..+. ..+.|.+...++ ..-.+.+. +.+
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~~-----------------~~g~~~~~-~~~ 81 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNSVTQHLTALGAQI-----------------YFHHRPEN-VLD 81 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCEE-----------------ESSCCGGG-GTT
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHCCCEE-----------------ECCCCHHH-cCC
Confidence 368999999999996 89999998 999999997643 334444322211 11123333 678
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHH-------HHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESA-------ARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~-------~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||++-.-|.+ +|.+...++. .+-+...++...+|-+..|..-+||.. +..+|++.+
T Consensus 82 ~d~vV~Spgi~~~--------~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 148 (494)
T 4hv4_A 82 ASVVVVSTAISAD--------NPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG 148 (494)
T ss_dssp CSEEEECTTSCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCC--------CHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence 9999887332221 2322211110 112333444445777777776666655 567777654
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0061 Score=57.49 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=65.6
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh--H-H--------HhhhhcccCCCCCCCCC
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE--H-I--------QRDLQMNKFDWDHPIHL 389 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~--~-~--------~~~~~~~~~~~~~~~~~ 389 (480)
.+..++|+|+|+. +....++..|.+.|.+|.+||...... . . ...+.
T Consensus 16 ~~~~~kIgiIG~G----------~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------------ 73 (245)
T 3dtt_A 16 YFQGMKIAVLGTG----------TVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWL------------ 73 (245)
T ss_dssp ---CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHG------------
T ss_pred ccCCCeEEEECCC----------HHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHH------------
Confidence 5678999999974 488999999999999999999853320 0 0 01110
Q ss_pred CCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHH-HhhcCCCCEEEEcCCC
Q 011650 390 QPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKI-YNNMQKPAFVFDGRNI 449 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~~~ 449 (480)
.... .....++.++++++|+||++++.+...+. ..++ ...++ ..+|+|+.|-
T Consensus 74 -----~~~~-~~~~~~~~e~~~~aDvVilavp~~~~~~~-~~~i~~~~l~-g~ivi~~s~~ 126 (245)
T 3dtt_A 74 -----PEHP-HVHLAAFADVAAGAELVVNATEGASSIAA-LTAAGAENLA-GKILVDIANP 126 (245)
T ss_dssp -----GGST-TCEEEEHHHHHHHCSEEEECSCGGGHHHH-HHHHCHHHHT-TSEEEECCCC
T ss_pred -----hhcC-ceeccCHHHHHhcCCEEEEccCcHHHHHH-HHHhhhhhcC-CCEEEECCCC
Confidence 0001 12356788999999999999998876642 2234 44443 4599999963
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.011 Score=58.10 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|.+|.+|||...... +
T Consensus 141 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~~----------------------------~ 182 (311)
T 2cuk_A 141 DLQGLTLGLVGMG----------RIGQAVAKRALAFGMRVVYHARTPKPLP----------------------------Y 182 (311)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSSS----------------------------S
T ss_pred CCCCCEEEEEEEC----------HHHHHHHHHHHHCCCEEEEECCCCcccc----------------------------c
Confidence 5688999999974 4788999999999999999999754321 1
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChH
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVE 453 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~ 453 (480)
. ..++++.++.+|+|+++++.. +.+++--++....|++..+++|+-+ +.+.+
T Consensus 183 ~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~ 237 (311)
T 2cuk_A 183 P-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTE 237 (311)
T ss_dssp C-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred c-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHH
Confidence 1 247888999999999998875 4555322355678888889999876 44543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0039 Score=62.10 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=27.1
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||||+|+| .|++|..+...|..+ +..+++.+...
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~elv~v~s~ 38 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PYLEVKQVTSR 38 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TTEEEEEEBCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEECc
Confidence 36899999 699999999999875 45687776543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.011 Score=58.46 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|...|++|.+|||..... . . ..
T Consensus 141 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~ 185 (333)
T 1dxy_A 141 KELGQQTVGVMGTG----------HIGQVAIKLFKGFGAKVIAYDPYPMKG-D-H-----------------------PD 185 (333)
T ss_dssp CCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSS-C-C-----------------------TT
T ss_pred cCCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCcchh-h-H-----------------------hc
Confidence 46788999999974 478899999999999999999976532 1 1 01
Q ss_pred eEEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+.+ .++++.++.+|+|+++++... .+++=-+.....|++..++||+-+ +.+.+.+.
T Consensus 186 ~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~ 244 (333)
T 1dxy_A 186 FDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAML 244 (333)
T ss_dssp CEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHH
T ss_pred ccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHH
Confidence 233 378899999999999998743 444322456678988889999865 56655443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0083 Score=60.43 Aligned_cols=99 Identities=10% Similarity=0.154 Sum_probs=72.1
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. .-...+++.|...|++|.+|||..... ..
T Consensus 111 ~~~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~---------------------- 154 (380)
T 2o4c_A 111 GADLAERTYGVVGAG----------QVGGRLVEVLRGLGWKVLVCDPPRQAR----EP---------------------- 154 (380)
T ss_dssp TCCGGGCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECHHHHHH----ST----------------------
T ss_pred hcccCCCEEEEEeCC----------HHHHHHHHHHHHCCCEEEEEcCChhhh----cc----------------------
Confidence 456789999999973 478899999999999999999853211 11
Q ss_pred ceEEecChhhhcccCcEEEEeecCcc-----ccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDE-----FKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~-----~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
+.. ..++++.++.+|+|+++++... -++ ++ +.+.+.|++..++||+-+ +.+.+.+
T Consensus 155 g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~sRG~vvd~~aL 217 (380)
T 2o4c_A 155 DGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD-EPRLAALRPGTWLVNASRGAVVDNQAL 217 (380)
T ss_dssp TSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-HHHHHTSCTTEEEEECSCGGGBCHHHH
T ss_pred Ccc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC-HHHHhhCCCCcEEEECCCCcccCHHHH
Confidence 011 2478899999999999987643 233 44 456788888789999866 5565433
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=57.01 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=30.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|.|+ |++|..++..|.++ ||+|+++.|++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~--G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR--GHEVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 89999997 99999999999998 99999998864
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.026 Score=58.71 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=73.0
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+..+.+++|+|+|+. .-...+++.|...|++|.+|||..........
T Consensus 271 ~g~~L~GktVgIIG~G----------~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~---------------------- 318 (494)
T 3d64_A 271 TDVMIAGKIAVVAGYG----------DVGKGCAQSLRGLGATVWVTEIDPICALQAAM---------------------- 318 (494)
T ss_dssp HCCCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSCHHHHHHHHT----------------------
T ss_pred cccccCCCEEEEEccC----------HHHHHHHHHHHHCCCEEEEEeCChHhHHHHHH----------------------
Confidence 3456899999999963 37888999999999999999997643211111
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHH
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKL 455 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~ 455 (480)
.++.+ .+++++++.+|+|++++.-+.+ ++ .+..+.|++.++|+|.-+- +|.+.+
T Consensus 319 ~G~~~-~~l~ell~~aDiVi~~~~t~~l--I~-~~~l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 319 EGYRV-VTMEYAADKADIFVTATGNYHV--IN-HDHMKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp TTCEE-CCHHHHTTTCSEEEECSSSSCS--BC-HHHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred cCCEe-CCHHHHHhcCCEEEECCCcccc--cC-HHHHhhCCCCcEEEEcCCCcchhchHHH
Confidence 12333 4789999999999999833222 44 3556789888899998653 466555
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.046 Score=56.54 Aligned_cols=104 Identities=16% Similarity=0.073 Sum_probs=74.2
Q ss_pred hcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 318 ~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.+..+.+++|+|+|+. .-...+++.|...|++|.+|||..........
T Consensus 251 ~~~~l~GktVgIIG~G----------~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~---------------------- 298 (479)
T 1v8b_A 251 TDFLISGKIVVICGYG----------DVGKGCASSMKGLGARVYITEIDPICAIQAVM---------------------- 298 (479)
T ss_dssp HCCCCTTSEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT----------------------
T ss_pred cccccCCCEEEEEeeC----------HHHHHHHHHHHhCcCEEEEEeCChhhHHHHHH----------------------
Confidence 3457899999999963 36788899999999999999998654211111
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhh
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRK 457 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~ 457 (480)
.++.+ .+++++++.+|+|++++.-+.+ ++. +..+.|++.++|+|.-+. ++.+.+.+
T Consensus 299 ~g~~~-~~l~ell~~aDiVi~~~~t~~l--I~~-~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 299 EGFNV-VTLDEIVDKGDFFITCTGNVDV--IKL-EHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp TTCEE-CCHHHHTTTCSEEEECCSSSSS--BCH-HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred cCCEe-cCHHHHHhcCCEEEECCChhhh--cCH-HHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 12333 4789999999999999743332 443 456779888899998763 56666554
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0065 Score=60.74 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=26.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
|||+|+| .|++|..++..|.++ +.++|+.+.
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~~ev~~i~ 40 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PMFELTALA 40 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 6899999 899999999998875 567887774
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.028 Score=57.81 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=73.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC-------
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST------- 396 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 396 (480)
.-||+|+|+.| -.+.++..|.+.|.+|.+||-.-..-+.... + ..|+ . .++.
T Consensus 8 ~~~~~vIGlG~----------vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~-g------~~~~--~--epgl~~~~~~~ 66 (446)
T 4a7p_A 8 SVRIAMIGTGY----------VGLVSGACFSDFGHEVVCVDKDARKIELLHQ-N------VMPI--Y--EPGLDALVASN 66 (446)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCSTTHHHHTT-T------CCSS--C--CTTHHHHHHHH
T ss_pred ceEEEEEcCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhc-C------CCCc--c--CCCHHHHHHhh
Confidence 45999999988 9999999999999999999976544222111 0 0010 0 0110
Q ss_pred --cCceEEecChhhhcccCcEEEEeecCcc---cccccH-------HHHHhhcCCCCEEEEcCCCCC
Q 011650 397 --INQVIVASDAYEATKDSHGVCILTEWDE---FKNLDY-------QKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 397 --~~~~~~~~~~~~a~~~~d~~vi~~~~~~---~~~~~~-------~~~~~~~~~~~~i~D~~~~~~ 451 (480)
..++++.+++.+++++||+++++++-|. ..+.|. +.+...+++..+||+...+..
T Consensus 67 ~~~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~p 133 (446)
T 4a7p_A 67 VKAGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPV 133 (446)
T ss_dssp HHTTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCT
T ss_pred cccCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Confidence 1347888999999999999999965553 223332 455666777779999886554
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.014 Score=57.74 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=73.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.+|||..... . . ..+
T Consensus 143 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~~ 187 (331)
T 1xdw_A 143 EVRNCTVGVVGLG----------RIGRVAAQIFHGMGATVIGEDVFEIKG-I-E-----------------------DYC 187 (331)
T ss_dssp CGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCS-C-T-----------------------TTC
T ss_pred CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCccHH-H-H-----------------------hcc
Confidence 4678999999973 478899999999999999999976532 1 1 012
Q ss_pred EEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCC--CCChHHH
Q 011650 401 IVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKL 455 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~ 455 (480)
.+ .++++.++.+|+|+++++.. +.+++--.+..+.|++.+++||+-+ +.+.+.+
T Consensus 188 ~~-~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL 244 (331)
T 1xdw_A 188 TQ-VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244 (331)
T ss_dssp EE-CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHH
T ss_pred cc-CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHH
Confidence 33 37889999999999998863 4444322456678988889999876 5665433
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0064 Score=58.86 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=66.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|+|.+|.++|..|++. | +|+++++++++.+.+.+.......... .+ .+.++ +..+.+..+|+
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~--G-~V~v~~r~~~~~~~l~~~~~~~~~~~~--~~------~~d~~-~~~~~~~~~Di 196 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEIAEKLNKKF--GE------EVKFS-GLDVDLDGVDI 196 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHHHHHHTCCH--HH------HEEEE-CTTCCCTTCCE
T ss_pred CEEEEECchHHHHHHHHHHHHC--C-CEEEEECCHHHHHHHHHHHhhhccccc--ce------eEEEe-eHHHhhCCCCE
Confidence 4789999999999999999998 9 999999999888776531000000000 00 12332 23344678999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+|-|+|..... ..+...+. -...++++.+|++.++.|..|
T Consensus 197 lVn~ag~~~~~-------~~~~~~~~-----~~~~l~~~~~v~Dv~y~p~~t 236 (287)
T 1nvt_A 197 IINATPIGMYP-------NIDVEPIV-----KAEKLREDMVVMDLIYNPLET 236 (287)
T ss_dssp EEECSCTTCTT-------CCSSCCSS-----CSTTCCSSSEEEECCCSSSSC
T ss_pred EEECCCCCCCC-------CCCCCCCC-----CHHHcCCCCEEEEeeeCCccC
Confidence 99998764321 00000000 013467788999888765443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.062 Score=54.64 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCC
Q 011650 312 NRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQP 391 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
.-+.+..+..+.+++|+|+|.. .-...+++.|...|++|.+||+.-........
T Consensus 208 ~gi~rat~~~L~GktV~ViG~G----------~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~---------------- 261 (435)
T 3gvp_A 208 DGLKRTTDMMFGGKQVVVCGYG----------EVGKGCCAALKAMGSIVYVTEIDPICALQACM---------------- 261 (435)
T ss_dssp HHHHHHHCCCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------
T ss_pred HHHHHhhCceecCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH----------------
Confidence 3344444567899999999974 37889999999999999999964211111111
Q ss_pred CCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHhhcCcEEEEecCC
Q 011650 392 TSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLRKIGFIVYSIGKP 468 (480)
Q Consensus 392 ~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG~~ 468 (480)
.++.+ .+++++++++|+++.++..+.. ++.+ ....|++.++|++.-+- ++.+.+...++.+..+...
T Consensus 262 ------~G~~v-~~Leeal~~ADIVi~atgt~~l--I~~e-~l~~MK~gailINvgrg~~EId~~~L~~~~~~~~~ir~~ 331 (435)
T 3gvp_A 262 ------DGFRL-VKLNEVIRQVDIVITCTGNKNV--VTRE-HLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQ 331 (435)
T ss_dssp ------TTCEE-CCHHHHTTTCSEEEECSSCSCS--BCHH-HHHHSCTTEEEEECSSTTTTBTGGGGCSTTCEEEEEETT
T ss_pred ------cCCEe-ccHHHHHhcCCEEEECCCCccc--CCHH-HHHhcCCCcEEEEecCCCccCCHHHHHhhcceeEEEEcC
Confidence 12222 4789999999999997664432 4433 45678887799998553 3444444446666666544
Q ss_pred Cc
Q 011650 469 LD 470 (480)
Q Consensus 469 ~~ 470 (480)
..
T Consensus 332 v~ 333 (435)
T 3gvp_A 332 VD 333 (435)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.019 Score=56.28 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=70.7
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--eEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA--RLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
...+|+|+|+. .-.-.++..|.+.|. +|.+||+.....+....++ .. -
T Consensus 32 ~~~kI~IIG~G----------~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G------------------~~--~ 81 (314)
T 3ggo_A 32 SMQNVLIVGVG----------FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------------------II--D 81 (314)
T ss_dssp SCSEEEEESCS----------HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------------------SC--S
T ss_pred CCCEEEEEeeC----------HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC------------------Cc--c
Confidence 34799999974 378889999999999 9999999654322222221 00 0
Q ss_pred EEecChhh-hcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 401 IVASDAYE-ATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 401 ~~~~~~~~-a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
...+++.+ +++++|+||++++-....+. .+++...+++..+|+|..++-.
T Consensus 82 ~~~~~~~~~~~~~aDvVilavp~~~~~~v-l~~l~~~l~~~~iv~d~~Svk~ 132 (314)
T 3ggo_A 82 EGTTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKG 132 (314)
T ss_dssp EEESCTTGGGGGCCSEEEECSCGGGHHHH-HHHHHHHSCTTCEEEECCSCCT
T ss_pred hhcCCHHHHhhccCCEEEEeCCHHHHHHH-HHHHhhccCCCcEEEECCCCcH
Confidence 34567888 89999999999988765542 3567777777779999877643
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.25 Score=45.78 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|.|||.|.+|..-+..|.+. |.+|++++.+.
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~ 64 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTV 64 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5799999999999999999998 99999998754
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.011 Score=56.08 Aligned_cols=101 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCe-EEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKAR-LSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~-V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+|+|+|... -+..+++.|.+.|.+ |.+||+.....+ +...+ ++
T Consensus 9 ~~m~i~iiG~G~----------mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~----------------------g~ 56 (266)
T 3d1l_A 9 EDTPIVLIGAGN----------LATNLAKALYRKGFRIVQVYSRTEESARELAQKV----------------------EA 56 (266)
T ss_dssp GGCCEEEECCSH----------HHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT----------------------TC
T ss_pred CCCeEEEEcCCH----------HHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc----------------------CC
Confidence 345899999743 788899999999999 999998533211 11111 34
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~ 456 (480)
....+++++++++|+|+++++.+..+++ .+++...+++..+|+|+.+.++.+.+.
T Consensus 57 ~~~~~~~~~~~~~Dvvi~av~~~~~~~v-~~~l~~~~~~~~ivv~~s~~~~~~~l~ 111 (266)
T 3d1l_A 57 EYTTDLAEVNPYAKLYIVSLKDSAFAEL-LQGIVEGKREEALMVHTAGSIPMNVWE 111 (266)
T ss_dssp EEESCGGGSCSCCSEEEECCCHHHHHHH-HHHHHTTCCTTCEEEECCTTSCGGGST
T ss_pred ceeCCHHHHhcCCCEEEEecCHHHHHHH-HHHHHhhcCCCcEEEECCCCCchHHHH
Confidence 5667888889999999999998865432 345555665566999999988766554
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0093 Score=57.60 Aligned_cols=66 Identities=6% Similarity=0.125 Sum_probs=50.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|+|+|.+|.+++..|++. |. +|++++|+.++.+++.+.. ......++.+ + ++|
T Consensus 123 k~vlvlGaGGaaraia~~L~~~--G~~~v~v~nRt~~ka~~La~~~------------------~~~~~~~l~~-l-~~D 180 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDN--FAKDIYVVTRNPEKTSEIYGEF------------------KVISYDELSN-L-KGD 180 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHT--TCSEEEEEESCHHHHHHHCTTS------------------EEEEHHHHTT-C-CCS
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhc------------------CcccHHHHHh-c-cCC
Confidence 4799999999999999999998 87 8999999999998887531 0111122333 4 899
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||-|+|..
T Consensus 181 ivInaTp~G 189 (282)
T 3fbt_A 181 VIINCTPKG 189 (282)
T ss_dssp EEEECSSTT
T ss_pred EEEECCccC
Confidence 999998754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0042 Score=62.27 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|||.|..|+.+|..|+++ |++|+++|+++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 8999999999999999999998 99999999764
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.01 Score=58.90 Aligned_cols=92 Identities=23% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCCh-hHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
++.+|+|+|+. +-+..++..|.+.|.+|.+||+.... .+....+ ++.
T Consensus 15 ~~~~I~IIG~G----------~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~----------------------G~~ 62 (338)
T 1np3_A 15 QGKKVAIIGYG----------SQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH----------------------GLK 62 (338)
T ss_dssp HTSCEEEECCS----------HHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT----------------------TCE
T ss_pred cCCEEEEECch----------HHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC----------------------CCE
Confidence 45789999974 47889999999999999999997554 2222222 234
Q ss_pred EecChhhhcccCcEEEEeecCcccccccHH-HHHhhcCCCCEEEEcCC
Q 011650 402 VASDAYEATKDSHGVCILTEWDEFKNLDYQ-KIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~~ 448 (480)
.. ++.++++++|+|+++++.....++ ++ ++...+++..+|+|..+
T Consensus 63 ~~-~~~e~~~~aDvVilavp~~~~~~v-~~~~i~~~l~~~~ivi~~~g 108 (338)
T 1np3_A 63 VA-DVKTAVAAADVVMILTPDEFQGRL-YKEEIEPNLKKGATLAFAHG 108 (338)
T ss_dssp EE-CHHHHHHTCSEEEECSCHHHHHHH-HHHHTGGGCCTTCEEEESCC
T ss_pred Ec-cHHHHHhcCCEEEEeCCcHHHHHH-HHHHHHhhCCCCCEEEEcCC
Confidence 44 788899999999999998765442 22 55556766668999865
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.043 Score=53.27 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=65.6
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--cC
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--EA 79 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~a 79 (480)
+|+|+|+ |.+|..++..+.+. |++ .++++|+.+. +. .+ .++.+..+++++.. .+
T Consensus 15 ~v~V~Gasg~~G~~~~~~l~~~--g~~-~V~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~~ 71 (294)
T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLEC--GTK-IVGGVTPGKG-----GQ-NV--------------HGVPVFDTVKEAVKETDA 71 (294)
T ss_dssp CEEEETTTSHHHHHHHHHHHHT--TCC-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHCC
T ss_pred EEEEECCCCCHHHHHHHHHHhC--CCe-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCCC
Confidence 6888898 99999999999887 888 5666665421 10 00 24677888888777 89
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
|++++++|.+ ...++++...+. ....+|+..+.++....+++.+..++.+
T Consensus 72 Dv~ii~vp~~---------------~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~g 121 (294)
T 2yv1_A 72 NASVIFVPAP---------------FAKDAVFEAIDA-GIELIVVITEHIPVHDTMEFVNYAEDVG 121 (294)
T ss_dssp CEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred CEEEEccCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 9999998742 234444444442 2223454444444433445666665543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.007 Score=58.45 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=48.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCC------HHHHHHH---HcCCCCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS------VPRINAW---NSDQLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~------~~~v~~l---~~g~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
||+|.|.|. |.+|..++..|++. |++|++++|+ +++.+.+ ......+.. +.+.-..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSNSEKAQLLESFKASGANIVH------------GSIDDHA 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC------------CCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEE------------eccCCHH
Confidence 468999996 99999999999998 9999999997 3443322 221111111 1111012
Q ss_pred CHHHHhhcCCEEEEEcc
Q 011650 71 DVEKHVREANIVFVSVN 87 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vp 87 (480)
++.++++++|+||.|.+
T Consensus 70 ~l~~~~~~~d~vi~~a~ 86 (308)
T 1qyc_A 70 SLVEAVKNVDVVISTVG 86 (308)
T ss_dssp HHHHHHHTCSEEEECCC
T ss_pred HHHHHHcCCCEEEECCc
Confidence 34556788999999875
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0025 Score=61.10 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=32.9
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
||||.|.|+|++|..++..|.++ |++|++++++++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ--GHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT--TCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 47899999999999999999998 9999999998654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.034 Score=53.48 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=74.8
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhh-----hc---ccCCCCCCCCCCCCCCC
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDL-----QM---NKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~ 395 (480)
-++|+|+|.. .....++..|.+.|++|.+||+.-...+..... .. .+..... .....
T Consensus 4 ~~kV~VIGaG----------~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-----~~~~~ 68 (283)
T 4e12_A 4 ITNVTVLGTG----------VLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAAD-----GAAQK 68 (283)
T ss_dssp CCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTT-----THHHH
T ss_pred CCEEEEECCC----------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCH-----HHHHH
Confidence 3689999974 388899999999999999999864332111110 00 0000000 00000
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChHHHh
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLR 456 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~ 456 (480)
....++..+++.++++++|.||+++.-+ +.+..-++++...+++..+|++...-++...+.
T Consensus 69 ~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la 130 (283)
T 4e12_A 69 ALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLV 130 (283)
T ss_dssp HHHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHH
T ss_pred HHcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 0123567789999999999999998765 233333567777777777888877777765443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.02 Score=59.51 Aligned_cols=113 Identities=11% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
..+|+|+|+. +....++..|.+.|++|.+||+.....+ +...++ -.++..
T Consensus 5 ~~~IgvIG~G----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------------------~~gi~~ 55 (474)
T 2iz1_A 5 QANFGVVGMA----------VMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ-------------------DKNLVF 55 (474)
T ss_dssp TBSEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT-------------------TSCEEE
T ss_pred CCcEEEEeeH----------HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc-------------------CCCeEE
Confidence 3589999974 4888999999999999999998543321 111110 024667
Q ss_pred ecChhhhccc---CcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCCh--HH----HhhcCcEEEEec
Q 011650 403 ASDAYEATKD---SHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDV--EK----LRKIGFIVYSIG 466 (480)
Q Consensus 403 ~~~~~~a~~~---~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~--~~----~~~~g~~y~~iG 466 (480)
..++.+++++ +|+|+++++.+ ..++ -.+++...+++..+|+|+.+.... .+ +.+.|+.|.+.+
T Consensus 56 ~~s~~e~v~~l~~aDvVilavp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~p 128 (474)
T 2iz1_A 56 TKTLEEFVGSLEKPRRIMLMVQAGAATDA-TIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTG 128 (474)
T ss_dssp CSSHHHHHHTBCSSCEEEECCCTTHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEE
T ss_pred eCCHHHHHhhccCCCEEEEEccCchHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCC
Confidence 7889888776 99999999985 3443 234566667666699999987743 22 223477776654
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.016 Score=57.65 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=58.9
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHhhc
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (480)
|.||+||| .|++|.-+...|..+ |..++..+.-....=..+. +...... ..+.+. .+.++...+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P~~el~~l~S~~~aG~~~~------------~~~p~~~-~~l~~~~~~~~~~~~~ 78 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKKLE------------EIFPSTL-ENSILSEFDPEKVSKN 78 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSBHH------------HHCGGGC-CCCBCBCCCHHHHHHH
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEeCcccccCChH------------HhChhhc-cCceEEeCCHHHhhcC
Confidence 56899997 599999999999986 6778877764321100111 0000000 112222 244553478
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+|++|+|+|.. +.+++.+.+ .|..||+.|+-
T Consensus 79 ~Dvvf~alp~~-------------------~s~~~~~~~-~g~~VIDlSsd 109 (351)
T 1vkn_A 79 CDVLFTALPAG-------------------ASYDLVREL-KGVKIIDLGAD 109 (351)
T ss_dssp CSEEEECCSTT-------------------HHHHHHTTC-CSCEEEESSST
T ss_pred CCEEEECCCcH-------------------HHHHHHHHh-CCCEEEECChh
Confidence 99999998742 345566666 78999998753
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0044 Score=59.21 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=49.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+|.|.|. |.+|..++..|++..+|++|+++++++++.+.+......+.. +.+.-..++.++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRH------------GDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEE------------eccCCHHHHHHHHhcCC
Confidence 68999986 999999999998753479999999988766555432111110 01100123445677899
Q ss_pred EEEEEcc
Q 011650 81 IVFVSVN 87 (480)
Q Consensus 81 vVii~Vp 87 (480)
+||-+..
T Consensus 69 ~vi~~a~ 75 (287)
T 2jl1_A 69 KLLFISG 75 (287)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998865
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0083 Score=59.88 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=26.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
+||+|+| .|++|.-+...|..+ +..+++.+.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~ 36 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-PYLELVKVS 36 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-CCcEEEEEe
Confidence 6899999 899999999988875 567887774
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0085 Score=57.97 Aligned_cols=74 Identities=11% Similarity=0.164 Sum_probs=49.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHH---cCCCCCCCCChHHHHHHhcCCCEEEecC
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS-----VPRINAWN---SDQLPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~---~g~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
||+|.|.|. |.+|..++..|++. |++|++++|+ +++.+.+. .....+.. +.+.-..+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~------------~D~~d~~~ 69 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIE------------ASLDDHQR 69 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEEC------------CCSSCHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEe------------CCCCCHHH
Confidence 478999995 99999999999998 9999999998 45544332 21111111 11111123
Q ss_pred HHHHhhcCCEEEEEccC
Q 011650 72 VEKHVREANIVFVSVNT 88 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vpt 88 (480)
+.++++++|+||.|.+.
T Consensus 70 l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 70 LVDALKQVDVVISALAG 86 (313)
T ss_dssp HHHHHTTCSEEEECCCC
T ss_pred HHHHHhCCCEEEECCcc
Confidence 45567899999999764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0059 Score=58.94 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=49.7
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH-------HHHHHHH---cCCCCCCCCChHHHHHHhcCCCEEEe
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV-------PRINAWN---SDQLPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~-------~~v~~l~---~g~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
||+|.|.|. |.+|..++..|++. |++|++++|++ ++.+.+. .....+.. +.+.-.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA--GNPTYALVRKTITAANPETKEELIDNYQSLGVILLE------------GDINDH 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH--TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEE------------CCTTCH
T ss_pred CcEEEEECCCchHHHHHHHHHHhC--CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEE------------eCCCCH
Confidence 688999996 99999999999998 99999999986 5544332 11111100 001001
Q ss_pred cCHHHHhhcCCEEEEEccC
Q 011650 70 TDVEKHVREANIVFVSVNT 88 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vpt 88 (480)
.++.++++++|+||-|.+.
T Consensus 68 ~~l~~~~~~~d~vi~~a~~ 86 (307)
T 2gas_A 68 ETLVKAIKQVDIVICAAGR 86 (307)
T ss_dssp HHHHHHHTTCSEEEECSSS
T ss_pred HHHHHHHhCCCEEEECCcc
Confidence 2344567889999998763
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.031 Score=54.88 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CeEEEECCCCC--hhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK----ARLSIYDPQVP--QEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
..+|+|+|+. .....++..|.+.| .+|.+||+... ..+....
T Consensus 22 ~mkI~iIG~G----------~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~---------------------- 69 (322)
T 2izz_A 22 SMSVGFIGAG----------QLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK---------------------- 69 (322)
T ss_dssp CCCEEEESCS----------HHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH----------------------
T ss_pred CCEEEEECCC----------HHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH----------------------
Confidence 3479999974 48889999999999 79999998754 2111112
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHh
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLR 456 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~ 456 (480)
.++.+..+..++++++|+||+++....+++. .+.+...+++..+|+|..+-++.+.+.
T Consensus 70 ~G~~~~~~~~e~~~~aDvVilav~~~~~~~v-l~~l~~~l~~~~ivvs~s~gi~~~~l~ 127 (322)
T 2izz_A 70 MGVKLTPHNKETVQHSDVLFLAVKPHIIPFI-LDEIGADIEDRHIVVSCAAGVTISSIE 127 (322)
T ss_dssp HTCEEESCHHHHHHHCSEEEECSCGGGHHHH-HHHHGGGCCTTCEEEECCTTCCHHHHH
T ss_pred cCCEEeCChHHHhccCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEeCCCCCHHHHH
Confidence 2356677888999999999999996544442 234555565556999998877765443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.04 Score=54.81 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=66.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-cCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-EAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (480)
++|+|+|+|.+|..+|..+... |.+|+++|+++++ .++.+. -+.+.. +.++.+. .||
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~--GakVvvsD~~~~~-~~~a~~------------------~ga~~v-~~~ell~~~~D 233 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTER-VAHAVA------------------LGHTAV-ALEDVLSTPCD 233 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHH-HHHHHH------------------TTCEEC-CGGGGGGCCCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCccH-HHHHHh------------------cCCEEe-ChHHhhcCccc
Confidence 4799999999999999999987 9999999999765 322221 012333 3345555 899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+++-|- +. +..+.. .+ +.++ ..+|+..+.. |-+.++-.+.|++.+ +.+.|..+
T Consensus 234 IliP~A-~~---------~~I~~~----~~----~~lk-~~iVie~AN~-p~t~~eA~~~L~~~g------Ilv~Pd~~ 286 (355)
T 1c1d_A 234 VFAPCA-MG---------GVITTE----VA----RTLD-CSVVAGAANN-VIADEAASDILHARG------ILYAPDFV 286 (355)
T ss_dssp EEEECS-CS---------CCBCHH----HH----HHCC-CSEECCSCTT-CBCSHHHHHHHHHTT------CEECCHHH
T ss_pred eecHhH-HH---------hhcCHH----HH----hhCC-CCEEEECCCC-CCCCHHHHHHHHhCC------EEEECCeE
Confidence 998552 21 123322 22 2344 4666654433 444433356676653 34667654
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.031 Score=58.18 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=77.9
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+.. ....++..|.+.|.+|.+||......+....- ++ ++ .++....
T Consensus 3 m~IgvIG~G~----------mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-----------~~----~g--~gi~~~~ 55 (482)
T 2pgd_A 3 ADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-----------EA----KG--TKVLGAH 55 (482)
T ss_dssp BSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-----------TT----TT--SSCEECS
T ss_pred CeEEEEChHH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc-----------cc----cC--CCeEEeC
Confidence 4799999854 88899999999999999999864432211110 00 00 2456677
Q ss_pred Chhhhc---ccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011650 405 DAYEAT---KDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~---~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG 466 (480)
++++++ +++|+|+++++.+ ..++ -.+++...+++..+|||+.+..... .+.+.|+.|.+.+
T Consensus 56 ~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~p 126 (482)
T 2pgd_A 56 SLEEMVSKLKKPRRIILLVKAGQAVDN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSG 126 (482)
T ss_dssp SHHHHHHHBCSSCEEEECSCTTHHHHH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHhhccCCCEEEEeCCChHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence 888876 4899999999986 4444 2346667777666999998877532 2234577777654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0095 Score=55.42 Aligned_cols=74 Identities=5% Similarity=0.066 Sum_probs=50.7
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|+|.|.| .|.+|..++..|+++++|++|+++++++++.+.+..+ ..+..-+ +.-..+++++++++
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~D------------~~d~~~~~~~~~~~ 70 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGD------------ITDADSINPAFQGI 70 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCC-TTEEECC------------TTSHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCC-eeEEEec------------CCCHHHHHHHHcCC
Confidence 47899998 6999999999999873369999999999887665221 1111111 10012344556789
Q ss_pred CEEEEEcc
Q 011650 80 NIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||-|..
T Consensus 71 d~vi~~a~ 78 (253)
T 1xq6_A 71 DALVILTS 78 (253)
T ss_dssp SEEEECCC
T ss_pred CEEEEecc
Confidence 99999875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.03 Score=57.79 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=71.9
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC--------
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST-------- 396 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 396 (480)
.||+|+|+.| -.+.++..|.+.|.+|.+||..-..-+.... + . .|+. .++.
T Consensus 3 mkI~VIG~G~----------vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~-g---~---~~i~----e~gl~~~l~~~~ 61 (450)
T 3gg2_A 3 LDIAVVGIGY----------VGLVSATCFAELGANVRCIDTDRNKIEQLNS-G---T---IPIY----EPGLEKMIARNV 61 (450)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T---C---SCCC----STTHHHHHHHHH
T ss_pred CEEEEECcCH----------HHHHHHHHHHhcCCEEEEEECCHHHHHHHHc-C---C---Cccc----CCCHHHHHHhhc
Confidence 4899999987 8999999999999999999985332111111 0 0 0100 0010
Q ss_pred -cCceEEecChhhhcccCcEEEEeecCcc----------cccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 397 -INQVIVASDAYEATKDSHGVCILTEWDE----------FKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 397 -~~~~~~~~~~~~a~~~~d~~vi~~~~~~----------~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
..++++.+++.++++++|+++++++-+. .++ -.+.+...+++..+|++...+..
T Consensus 62 ~~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~-v~~~i~~~l~~g~iVV~~STv~p 126 (450)
T 3gg2_A 62 KAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLD-AARSIGRAMSRYILIVTKSTVPV 126 (450)
T ss_dssp HTTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHH-HHHHHHHHCCSCEEEEECSCCCT
T ss_pred ccCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHH-HHHHHHhhCCCCCEEEEeeeCCC
Confidence 2347788899999999999999997762 222 23466666777779999987554
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.14 Score=49.56 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=65.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
.+|.|+|+ |.+|..++..+.+. |++ .++.+|+.+. +. .+ .++.+..+++++.. .
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 70 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY--GTK-VVAGVTPGKG-----GS-EV--------------HGVPVYDSVKEALAEHP 70 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHCT
T ss_pred CEEEEECCCCCHHHHHHHHHHhC--CCc-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCC
Confidence 36888898 99999999999887 888 5566665421 00 00 24677888888665 4
Q ss_pred -CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 79 -ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
+|++++++|.+. +.++++...+. ....+|+..+.++....+++.+..++.+
T Consensus 71 ~~DvaIi~vp~~~---------------~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~g 122 (297)
T 2yv2_A 71 EINTSIVFVPAPF---------------APDAVYEAVDA-GIRLVVVITEGIPVHDTMRFVNYARQKG 122 (297)
T ss_dssp TCCEEEECCCGGG---------------HHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEecCHHH---------------HHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 999999998532 24444444442 2233454444444433445666665543
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0027 Score=62.84 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=44.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCC--------CCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCP--------SIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~--------G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
+||+|||+|.||..++..+.++ + +.+|. ++|++.++.+ + + +. ..+++|+
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~-~~~l~~~g~~~~lvaV~d~~~~~~~----~---~---~~-----------~~~~~d~ 61 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLER-AEELSAFGVVPRFLGVLVRDPRKPR----A---I---PQ-----------ELLRAEP 61 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-GGGGGGGTEEEEEEEEECSCTTSCC----S---S---CG-----------GGEESSC
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-hhhHhhcCCCEEEEEEEECCHHHhh----c---c---Cc-----------ccccCCH
Confidence 6899999999999999998875 2 24554 4677743211 1 1 00 1256787
Q ss_pred HHHhhcCCEEEEEccC
Q 011650 73 EKHVREANIVFVSVNT 88 (480)
Q Consensus 73 ~~a~~~aDvVii~Vpt 88 (480)
++.+ +.|+|++|+|+
T Consensus 62 ~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 62 FDLL-EADLVVEAMGG 76 (332)
T ss_dssp CCCT-TCSEEEECCCC
T ss_pred HHHh-CCCEEEECCCC
Confidence 7766 99999999875
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.021 Score=55.15 Aligned_cols=108 Identities=8% Similarity=0.093 Sum_probs=73.0
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. .-+..+++.|.+.|.+|.+||+.-.. .. .+. ..++....
T Consensus 5 ~~i~iiG~G----------~~G~~~a~~l~~~g~~V~~~~~~~~~--~~-~~~-------------------~~g~~~~~ 52 (301)
T 3cky_A 5 IKIGFIGLG----------AMGKPMAINLLKEGVTVYAFDLMEAN--VA-AVV-------------------AQGAQACE 52 (301)
T ss_dssp CEEEEECCC----------TTHHHHHHHHHHTTCEEEEECSSHHH--HH-HHH-------------------TTTCEECS
T ss_pred CEEEEECcc----------HHHHHHHHHHHHCCCeEEEEeCCHHH--HH-HHH-------------------HCCCeecC
Confidence 589999974 47888999999999999999985322 21 121 01355677
Q ss_pred ChhhhcccCcEEEEeecCcc-cccccH--HHHHhhcCCCCEEEEcCCCCC--hHHH----hhcCcEEEE
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLDY--QKIYNNMQKPAFVFDGRNILD--VEKL----RKIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~--~~~~----~~~g~~y~~ 464 (480)
++.++++++|+|+++++.+. ++..-. +.+...+++..+|+|..+... .+.+ .+.|++|..
T Consensus 53 ~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~ 121 (301)
T 3cky_A 53 NNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD 121 (301)
T ss_dssp SHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 88999999999999997653 332211 144556666669999988773 2222 234777754
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.03 Score=53.60 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--eEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA--RLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
++|+|+|+. .-+..++..|.+.|. +|.+||+.....+....++ .. ...
T Consensus 2 ~~I~iIG~G----------~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g------------------~~--~~~ 51 (281)
T 2g5c_A 2 QNVLIVGVG----------FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------------------II--DEG 51 (281)
T ss_dssp CEEEEESCS----------HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------------------SC--SEE
T ss_pred cEEEEEecC----------HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCC------------------Cc--ccc
Confidence 479999974 478899999999998 9999999643322222221 00 023
Q ss_pred ecChhhhcc-cCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 403 ASDAYEATK-DSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 403 ~~~~~~a~~-~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
.+++.++++ ++|+|+++++.....+. .+++...+++..+|+|..+.-.
T Consensus 52 ~~~~~~~~~~~aDvVilavp~~~~~~v-~~~l~~~l~~~~iv~~~~~~~~ 100 (281)
T 2g5c_A 52 TTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKG 100 (281)
T ss_dssp ESCGGGGGGTCCSEEEECSCHHHHHHH-HHHHHHHSCTTCEEEECCSCCT
T ss_pred cCCHHHHhcCCCCEEEEcCCHHHHHHH-HHHHHhhCCCCcEEEECCCCcH
Confidence 457778899 99999999998766542 2456666776679999877654
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.038 Score=54.19 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=52.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC---HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cC---H
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS---VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TD---V 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~---~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d---~ 72 (480)
.++.|+|+|-+|.+++..|++. |. +|++++|+ .++.+++.+. +-.. ....+.+. ++ +
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~--Ga~~V~i~nR~~~~~~~a~~la~~-----------~~~~-~~~~~~~~~~~~~~~l 220 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALD--GVKEISIFNRKDDFYANAEKTVEK-----------INSK-TDCKAQLFDIEDHEQL 220 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTTHHHHHHHHHH-----------HHHH-SSCEEEEEETTCHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHC--CCCEEEEEECCCchHHHHHHHHHH-----------hhhh-cCCceEEeccchHHHH
Confidence 4789999999999999999998 87 89999999 8887776531 0000 00112221 22 3
Q ss_pred HHHhhcCCEEEEEccCC
Q 011650 73 EKHVREANIVFVSVNTP 89 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp 89 (480)
.+.+.++|+||-|+|..
T Consensus 221 ~~~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 221 RKEIAESVIFTNATGVG 237 (315)
T ss_dssp HHHHHTCSEEEECSSTT
T ss_pred HhhhcCCCEEEECccCC
Confidence 45577999999998754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0068 Score=59.02 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=31.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||+|.|.|. |.+|..++..|++. |++|+++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF--SHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT--TCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC--CCcEEEEECCc
Confidence 678999995 99999999999998 99999999985
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0064 Score=60.88 Aligned_cols=32 Identities=25% Similarity=0.620 Sum_probs=26.8
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|||+|+| .|++|.-+...|.++ +..+++.+..
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~~ 49 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-PHFQVTLMTA 49 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-SSEEEEEEBC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 5899999 899999999999876 4568877754
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0094 Score=58.25 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=35.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|.|.|. |.+|..++..|+++ |++|++++++++..+.+.
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCcccHHHHH
Confidence 68999987 99999999999998 999999999987765543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0035 Score=61.53 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=47.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+|+|.|.| .|.+|..++..|+++ |++|+++++++...+.+......+.. +.+.-..++.++++++
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~l~~~~~~~~~------------~Dl~d~~~~~~~~~~~ 78 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAA--GHDLVLIHRPSSQIQRLAYLEPECRV------------AEMLDHAGLERALRGL 78 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECTTSCGGGGGGGCCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEecChHhhhhhccCCeEEEE------------ecCCCHHHHHHHHcCC
Confidence 47999999 599999999999998 99999999987654433321111000 0110011234556789
Q ss_pred CEEEEEcc
Q 011650 80 NIVFVSVN 87 (480)
Q Consensus 80 DvVii~Vp 87 (480)
|+||-|..
T Consensus 79 d~vih~a~ 86 (342)
T 2x4g_A 79 DGVIFSAG 86 (342)
T ss_dssp SEEEEC--
T ss_pred CEEEECCc
Confidence 99998875
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.076 Score=54.23 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCC
Q 011650 310 FVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHL 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
++.-+.+..+..+.+++|+|+|.. .-...+++.|...|++|.+||+.-........
T Consensus 233 lvdgI~Ratg~~L~GKTVgVIG~G----------~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~-------------- 288 (464)
T 3n58_A 233 LVDGIRRGTDVMMAGKVAVVCGYG----------DVGKGSAQSLAGAGARVKVTEVDPICALQAAM-------------- 288 (464)
T ss_dssp HHHHHHHHHCCCCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------
T ss_pred HHHHHHHhcCCcccCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEEeCCcchhhHHHh--------------
Confidence 334455555667899999999963 36888999999999999999763211111111
Q ss_pred CCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 390 QPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
.++.+ .+++++++.+|+++..|..+.. ++- +....|++.++|+++-+
T Consensus 289 --------~G~~v-v~LeElL~~ADIVv~atgt~~l--I~~-e~l~~MK~GAILINvGR 335 (464)
T 3n58_A 289 --------DGFEV-VTLDDAASTADIVVTTTGNKDV--ITI-DHMRKMKDMCIVGNIGH 335 (464)
T ss_dssp --------TTCEE-CCHHHHGGGCSEEEECCSSSSS--BCH-HHHHHSCTTEEEEECSS
T ss_pred --------cCcee-ccHHHHHhhCCEEEECCCCccc--cCH-HHHhcCCCCeEEEEcCC
Confidence 22333 3789999999999998765432 344 44577888888888755
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.034 Score=53.27 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=0.0
Q ss_pred ceEEEECCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.++.|||.|.+ |.++|..|...+.|..|+++++. +.++.+.++.||
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~---------------------------------t~~L~~~~~~AD 205 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG---------------------------------TRDLPALTRQAD 205 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc---------------------------------hhHHHHHHhhCC
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
+||.+++.|---.. ..++++.+||+.+
T Consensus 206 IVI~Avg~p~~I~~--------------------~~vk~GavVIDVg 232 (281)
T 2c2x_A 206 IVVAAVGVAHLLTA--------------------DMVRPGAAVIDVG 232 (281)
T ss_dssp EEEECSCCTTCBCG--------------------GGSCTTCEEEECC
T ss_pred EEEECCCCCcccCH--------------------HHcCCCcEEEEcc
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0025 Score=63.03 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=49.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHH-hhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKH-VRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (480)
++|.|+|+|.+|..+|..|.+. |+ |+++|.|+++++ +++...++. ++...+. ++++ +++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~--g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~--------------L~~a~i~~ 177 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSD--------------LEKANVRG 177 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS--CE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHH--------------HHHTCSTT
T ss_pred CCEEEECCcHHHHHHHHHHHhC--Cc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHH--------------HHhcChhh
Confidence 4799999999999999999988 89 999999999998 765322211 1111111 2222 578
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
||.++++++.
T Consensus 178 a~~vi~~~~~ 187 (336)
T 1lnq_A 178 ARAVIVDLES 187 (336)
T ss_dssp EEEEEECCSS
T ss_pred ccEEEEcCCc
Confidence 9999999753
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0057 Score=60.71 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=26.6
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcC-CCCeEEEEe
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKC-PSIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~-~G~~V~~~D 33 (480)
||||+|+| .|++|.-+...|.++. +.++++.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 58999999 9999999999888751 356777665
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.024 Score=54.56 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=61.7
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. ..+..+++.|.+.|.+|.+||+.....+ .+. ..++....+
T Consensus 2 ~i~iiG~G----------~mG~~~a~~l~~~g~~V~~~~~~~~~~~---~~~-------------------~~g~~~~~~ 49 (296)
T 2gf2_A 2 PVGFIGLG----------NMGNPMAKNLMKHGYPLIIYDVFPDACK---EFQ-------------------DAGEQVVSS 49 (296)
T ss_dssp CEEEECCS----------TTHHHHHHHHHHTTCCEEEECSSTHHHH---HHH-------------------TTTCEECSS
T ss_pred eEEEEecc----------HHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHH-------------------HcCCeecCC
Confidence 68999974 3788999999999999999998643322 121 023566778
Q ss_pred hhhhcccCcEEEEeecCcc-cccccHHH---HHhhcCCCCEEEEcCCCC
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNLDYQK---IYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~~~~~---~~~~~~~~~~i~D~~~~~ 450 (480)
+.++++++|+|+++++.+. ++.. ... +...+++..+|+|..++-
T Consensus 50 ~~~~~~~~Dvvi~~vp~~~~~~~v-~~~~~~~~~~l~~~~~vv~~s~~~ 97 (296)
T 2gf2_A 50 PADVAEKADRIITMLPTSINAIEA-YSGANGILKKVKKGSLLIDSSTID 97 (296)
T ss_dssp HHHHHHHCSEEEECCSSHHHHHHH-HHSTTSGGGTCCTTCEEEECSCCC
T ss_pred HHHHHhcCCEEEEeCCCHHHHHHH-HhCchhHHhcCCCCCEEEECCCCC
Confidence 8899999999999986543 2221 111 222345556999955443
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.014 Score=58.21 Aligned_cols=32 Identities=22% Similarity=0.599 Sum_probs=26.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCC-----CCeEEEEe
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCP-----SIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~-----G~~V~~~D 33 (480)
||||+|+| .|++|..+...|.++ + .++++.+.
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~-~~~~~~~~ei~~l~ 46 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH-PAYADGRLRIGALT 46 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-HHHHTTSEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCCCCccEEEEEEE
Confidence 46999999 999999999999876 2 24777664
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.047 Score=55.89 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC------
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST------ 396 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 396 (480)
+-.+|+|+|+.| -.+.++..|.+ |.+|.+||..-.. +. .+.. + ..|+ . .++.
T Consensus 35 ~~mkIaVIGlG~----------mG~~lA~~La~-G~~V~~~D~~~~~--v~-~l~~-g---~~~i--~--e~~l~~ll~~ 92 (432)
T 3pid_A 35 EFMKITISGTGY----------VGLSNGVLIAQ-NHEVVALDIVQAK--VD-MLNQ-K---ISPI--V--DKEIQEYLAE 92 (432)
T ss_dssp CCCEEEEECCSH----------HHHHHHHHHHT-TSEEEEECSCHHH--HH-HHHT-T---CCSS--C--CHHHHHHHHH
T ss_pred CCCEEEEECcCH----------HHHHHHHHHHc-CCeEEEEecCHHH--hh-HHhc-c---CCcc--c--cccHHHHHhh
Confidence 446999999987 88999999887 9999999975332 21 1110 0 0010 0 0000
Q ss_pred -cCceEEecChhhhcccCcEEEEeecCccc---cccc-------HHHHHhhcCCCCEEEEcCCCCC
Q 011650 397 -INQVIVASDAYEATKDSHGVCILTEWDEF---KNLD-------YQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 397 -~~~~~~~~~~~~a~~~~d~~vi~~~~~~~---~~~~-------~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
..++++.+++.+++++||+|+++++-+.= ...| .+.+.. +++..+|||...+..
T Consensus 93 ~~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~p 157 (432)
T 3pid_A 93 KPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPV 157 (432)
T ss_dssp SCCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCT
T ss_pred ccCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCCh
Confidence 12577888999999999999999887621 0122 245566 677779999877665
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0098 Score=58.70 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH----HHHHHH---HcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV----PRINAW---NSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~----~~v~~l---~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
|+|.|.|+ |++|..++..|.+. |++|++++|++ ++.+.+ ......+.. +.+.-..++.
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~------------~Dl~d~~~l~ 76 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA--HRPTYILARPGPRSPSKAKIFKALEDKGAIIVY------------GLINEQEAME 76 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT--TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEE------------CCTTCHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHC--CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEE------------eecCCHHHHH
Confidence 68999997 99999999999998 89999999976 444432 221111111 1111112344
Q ss_pred HHhh--cCCEEEEEccC
Q 011650 74 KHVR--EANIVFVSVNT 88 (480)
Q Consensus 74 ~a~~--~aDvVii~Vpt 88 (480)
++++ ++|+||-|...
T Consensus 77 ~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 77 KILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHTTCCEEEECCCG
T ss_pred HHHhhCCCCEEEECCch
Confidence 5667 99999999753
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0039 Score=57.53 Aligned_cols=69 Identities=10% Similarity=0.302 Sum_probs=45.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHH-HHHH-HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVP-RINA-WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~-~v~~-l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (480)
.+|+|+|+|.+|..++..+.....|+++. ++|.|++ ++.. .-.| .| +.-.+++++.++
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~G-vp-----------------V~~~~dL~~~v~~ 146 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDG-IP-----------------VYGISTINDHLID 146 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTC-CB-----------------EEEGGGHHHHC-C
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECC-eE-----------------EeCHHHHHHHHHH
Confidence 47999999999999998742111377766 4799987 5432 1111 12 223456666555
Q ss_pred -cCCEEEEEccC
Q 011650 78 -EANIVFVSVNT 88 (480)
Q Consensus 78 -~aDvVii~Vpt 88 (480)
+.|.+++|+|+
T Consensus 147 ~~Id~vIIAvPs 158 (212)
T 3keo_A 147 SDIETAILTVPS 158 (212)
T ss_dssp CSCCEEEECSCG
T ss_pred cCCCEEEEecCc
Confidence 58999999985
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.041 Score=53.79 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.8
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||+|.|.| .|.+|..++..|++. |++|+++|++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ--GIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC--CCEEEEEeCC
Confidence 78999998 699999999999998 9999999974
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.12 Score=53.72 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=67.4
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+++|.|||+|..|.+ +|..|.+. |++|+++|..... .+.+.+....+ ..-.+.+ .+.+
T Consensus 19 ~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~~-----------------~~g~~~~-~~~~ 78 (491)
T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNPVTQQLMNLGATI-----------------YFNHRPE-NVRD 78 (491)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCEE-----------------ESSCCGG-GGTT
T ss_pred CCEEEEEEcCHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHCCCEE-----------------ECCCCHH-HcCC
Confidence 368999999999997 89999888 9999999986532 23343321111 1112233 3678
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHH-------HHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTY-------WESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~-------v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||+.-.-|.+ .+.+.. +....+.+...++...+|-+..|..-+||.. +..+|++.+
T Consensus 79 a~~vv~s~~i~~~--------~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 145 (491)
T 2f00_A 79 ASVVVVSSAISAD--------NPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAG 145 (491)
T ss_dssp CSEEEECTTCCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 9988876322211 111100 0011122333344346777777886666655 577787653
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.094 Score=52.12 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=26.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEe
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
|+||||+|.|++|.-+...|..+ +.++|+.+.
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~-p~veivain 48 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMER-NDITVVAIN 48 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-SSCEEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcC-CCeEEEEec
Confidence 46999999999999999988875 578877664
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=54.08 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=29.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|+|||+|..|+++|..|+++ |++|+++|.++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence 599999999999999999999 99999999764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.013 Score=61.39 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.7
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|||.|.| .|++|..++..|.++ |++|+++++++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~--G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG--GHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCC
Confidence 58999999 699999999999998 9999999998653
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.14 Score=53.71 Aligned_cols=115 Identities=11% Similarity=0.016 Sum_probs=67.8
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+++|-|||.|-.|.+ +|..|.++ |++|++.|.+. ...+.|.+...+ +..-.+.+....
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~--G~~V~~sD~~~~~~~~~~L~~~gi~-----------------~~~G~~~~~~~~ 79 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARAL--GHTVTGSDANIYPPMSTQLEQAGVT-----------------IEEGYLIAHLQP 79 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCCTTHHHHHHHTTCE-----------------EEESCCGGGGCS
T ss_pred CCEEEEEEecHhhHHHHHHHHHhC--CCEEEEECCCCCcHHHHHHHHCCCE-----------------EECCCCHHHcCC
Confidence 378999999999997 57777777 99999999863 234444432111 222234444235
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHH----------HHhhC-CCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARM----------IADVS-KSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
++|+||++-.-|.+ .|. +..+.+. +...+ +...+|.+..|..-.||.. +..+|++.+
T Consensus 80 ~~d~vV~Spgi~~~--------~p~---l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G 148 (524)
T 3hn7_A 80 APDLVVVGNAMKRG--------MDV---IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG 148 (524)
T ss_dssp CCSEEEECTTCCTT--------SHH---HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCcCCC--------CHH---HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 78999876332211 233 3333221 23323 3346777777876666655 567777653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.17 Score=50.64 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=67.4
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC---
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN--- 398 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 398 (480)
+.+++|+|+|.. .-.+..++.|...|++|.+||+.....+....++. .+.... ......+.+.
T Consensus 182 v~~~kV~ViG~G----------~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa---~~~~l~-~~~~~~~gya~~~ 247 (381)
T 3p2y_A 182 VKPASALVLGVG----------VAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGA---QWLDLG-IDAAGEGGYAREL 247 (381)
T ss_dssp ECCCEEEEESCS----------HHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTC---EECCCC--------------
T ss_pred cCCCEEEEECch----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---eEEecc-ccccccccchhhh
Confidence 478899999963 47788999999999999999998665333333321 000000 0000000000
Q ss_pred ----ceEEecChhhhcccCcEEEEeecCccc--ccccHHHHHhhcCCCCEEEEcC
Q 011650 399 ----QVIVASDAYEATKDSHGVCILTEWDEF--KNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 399 ----~~~~~~~~~~a~~~~d~~vi~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
......++.++++++|+||..+..|.= ..+=.++..+.|++..+|||.-
T Consensus 248 ~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 248 SEAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 000123677899999999987644421 1122356778898888999984
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.035 Score=53.17 Aligned_cols=104 Identities=11% Similarity=0.126 Sum_probs=69.1
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .-+..+++.|.+ |.+|.+||+.....+..... ++...+
T Consensus 3 ~i~iiG~G----------~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~----------------------g~~~~~- 48 (289)
T 2cvz_A 3 KVAFIGLG----------AMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE----------------------FGSEAV- 48 (289)
T ss_dssp CEEEECCS----------TTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH----------------------HCCEEC-
T ss_pred eEEEEccc----------HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC----------------------CCcccC-
Confidence 69999974 478889999999 99999999865432211111 123334
Q ss_pred hhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCCCCCh--HH----HhhcCcEEEE
Q 011650 406 AYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRNILDV--EK----LRKIGFIVYS 464 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~--~~----~~~~g~~y~~ 464 (480)
+.++++++|+|+++++.+. .++ -.+.+...+++..+|+|..+.... +. +.+.|..|.+
T Consensus 49 ~~~~~~~~D~vi~~v~~~~~~~~-v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~ 113 (289)
T 2cvz_A 49 PLERVAEARVIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD 113 (289)
T ss_dssp CGGGGGGCSEEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHhCCCEEEEeCCChHHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 6778899999999999875 443 224555566666689999876532 12 2234666654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.017 Score=56.07 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=46.9
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHH---HHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVP-RINA---WNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~---l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+|.|.|. |.+|..++..|++. |++|++++|+++ +.+. +......+.. +.+.-..++.++++
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~------------~Dl~d~~~l~~a~~ 78 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKL--GHPTYVFTRPNSSKTTLLDEFQSLGAIIVK------------GELDEHEKLVELMK 78 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHT--TCCEEEEECTTCSCHHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred eEEEECCCchHHHHHHHHHHHC--CCcEEEEECCCCchhhHHHHhhcCCCEEEE------------ecCCCHHHHHHHHc
Confidence 7999995 99999999999998 999999999864 3222 2221111110 00100123455678
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++|+||.|.+
T Consensus 79 ~~d~vi~~a~ 88 (318)
T 2r6j_A 79 KVDVVISALA 88 (318)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 9999999875
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0064 Score=60.83 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
+||+||| .||+|.-+...|.++ |..++..+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~ 39 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLA 39 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEE
Confidence 4799999 699999999988775 667877664
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0064 Score=60.83 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
+||+||| .||+|.-+...|.++ |..++..+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~ 39 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLA 39 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEE
Confidence 4799999 699999999988775 667877664
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.028 Score=54.03 Aligned_cols=110 Identities=9% Similarity=0.062 Sum_probs=72.6
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhC--CCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGD--KARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~--g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
..+|+|+|+.. -+..++..|.+. |.+|.+||+.....+....++ .. ..
T Consensus 6 ~~~I~iIG~G~----------mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g------------------~~--~~ 55 (290)
T 3b1f_A 6 EKTIYIAGLGL----------IGASLALGIKRDHPHYKIVGYNRSDRSRDIALERG------------------IV--DE 55 (290)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTT------------------SC--SE
T ss_pred cceEEEEeeCH----------HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcC------------------Cc--cc
Confidence 45899999754 788899999887 689999998643222111111 00 03
Q ss_pred EecChhhhcccCcEEEEeecCcccccccHHHHHhh-cCCCCEEEEcCCCCCh--HHHhh----cCcEEEE
Q 011650 402 VASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNN-MQKPAFVFDGRNILDV--EKLRK----IGFIVYS 464 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~~~~~~--~~~~~----~g~~y~~ 464 (480)
...++.++++++|+|+++++.+..++. .+++... +++..+|+|..+.... +.+.+ .++++.+
T Consensus 56 ~~~~~~~~~~~aDvVilavp~~~~~~v-~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~ 124 (290)
T 3b1f_A 56 ATADFKVFAALADVIILAVPIKKTIDF-IKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVG 124 (290)
T ss_dssp EESCTTTTGGGCSEEEECSCHHHHHHH-HHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEE
T ss_pred ccCCHHHhhcCCCEEEEcCCHHHHHHH-HHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEE
Confidence 456777888999999999998876443 3456665 6666799998776432 33332 1666655
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.12 Score=53.42 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+++|.|||+|..|.+ +|..|.+. |++|+++|..... .+.+.+.... +..-.+.+ .+.+
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~-----------------~~~g~~~~-~~~~ 77 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGAK-----------------IYIGHAEE-HIEG 77 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTCE-----------------EEESCCGG-GGTT
T ss_pred CCEEEEEeecHHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHHHhCCCE-----------------EECCCCHH-HcCC
Confidence 368999999999997 99999988 9999999986533 2333321111 11122333 3678
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHH-------HHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTY-------WESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~-------v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+||+.-.-|.+ .+.+.. +....+.+...++...+|-+..|..-+||.. +..+|++.+
T Consensus 78 a~~vv~s~~i~~~--------~~~~~~a~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G 144 (475)
T 1p3d_A 78 ASVVVVSSAIKDD--------NPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAK 144 (475)
T ss_dssp CSEEEECTTSCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 9988876322211 111100 0001112222333335776777886666655 577787654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.065 Score=50.52 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=66.3
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.+|+|+|+.. .+..+++.|.+.|.+|.+||+.....+ +...+ ++...
T Consensus 4 m~i~iiG~G~----------mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------------------g~~~~ 51 (259)
T 2ahr_A 4 MKIGIIGVGK----------MASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------------------ALPYA 51 (259)
T ss_dssp CEEEEECCSH----------HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------------------TCCBC
T ss_pred cEEEEECCCH----------HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------------------CCEee
Confidence 4899999743 788899999999999999998633211 11112 23445
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
.++.++++++|+|+++++.... ..+...+++..+|+|..+-++.+.+.+
T Consensus 52 ~~~~~~~~~~D~Vi~~v~~~~~-----~~v~~~l~~~~~vv~~~~~~~~~~l~~ 100 (259)
T 2ahr_A 52 MSHQDLIDQVDLVILGIKPQLF-----ETVLKPLHFKQPIISMAAGISLQRLAT 100 (259)
T ss_dssp SSHHHHHHTCSEEEECSCGGGH-----HHHHTTSCCCSCEEECCTTCCHHHHHH
T ss_pred CCHHHHHhcCCEEEEEeCcHhH-----HHHHHHhccCCEEEEeCCCCCHHHHHH
Confidence 6788889999999999984432 234444445558999977666665543
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.057 Score=53.88 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=73.1
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..||+|+|.. +-...++..|.+.|.+|.+||..-..-+.....+....+ .|. -...+++...
T Consensus 29 ~mkI~VIGaG----------~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~-------l~g-~~l~~~i~~t 90 (356)
T 3k96_A 29 KHPIAILGAG----------SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRY-------LPN-YPFPETLKAY 90 (356)
T ss_dssp CSCEEEECCS----------HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTT-------BTT-CCCCTTEEEE
T ss_pred CCeEEEECcc----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCccc-------CCC-CccCCCeEEE
Confidence 4589999974 488899999999999999999853221111111100000 000 0123457778
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
+++.++++++|+||++++...+++ -.+++...+++..+|++..+=+.+
T Consensus 91 ~d~~ea~~~aDvVilaVp~~~~~~-vl~~i~~~l~~~~ivvs~~kGi~~ 138 (356)
T 3k96_A 91 CDLKASLEGVTDILIVVPSFAFHE-VITRMKPLIDAKTRIAWGTKGLAK 138 (356)
T ss_dssp SCHHHHHTTCCEEEECCCHHHHHH-HHHHHGGGCCTTCEEEECCCSCBT
T ss_pred CCHHHHHhcCCEEEECCCHHHHHH-HHHHHHHhcCCCCEEEEEeCCCCc
Confidence 899999999999999999876554 245666666666689998774443
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.044 Score=54.13 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eC-CHHHHHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI-SVPRINAWN 43 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~-~~~~v~~l~ 43 (480)
|+||||+|.|++|.-+...|..+ +..+|.++ |. +++....+-
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~-~~veivain~~~~~~~~~~ll 44 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKN-PDIEVVAVNDLTDANTLAHLL 44 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTC-TTEEEEEEECSSCHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhCC-CCeEEEEEeCCCCHHHHHHHh
Confidence 78999999999999999988765 56777665 43 444444443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.11 Score=49.99 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC---eEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA---RLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~---~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
..||+|+|. .+.+-.++..|.+.|. +|.+||+.....+.... ..++
T Consensus 3 ~~~I~iIG~----------G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~---------------------~~gi 51 (280)
T 3tri_A 3 TSNITFIGG----------GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKE---------------------KCGV 51 (280)
T ss_dssp CSCEEEESC----------SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHH---------------------TTCC
T ss_pred CCEEEEEcc----------cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHH---------------------HcCC
Confidence 468999996 3588899999999998 99999996543221111 0145
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhh-cCCCCEEEEcCCCCChHHHhh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNN-MQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~~~~~~~~~~~ 457 (480)
....+..++++++|+||++++...+++. ++++... +++..+|+..-+=+..+.+.+
T Consensus 52 ~~~~~~~~~~~~aDvVilav~p~~~~~v-l~~l~~~~l~~~~iiiS~~agi~~~~l~~ 108 (280)
T 3tri_A 52 HTTQDNRQGALNADVVVLAVKPHQIKMV-CEELKDILSETKILVISLAVGVTTPLIEK 108 (280)
T ss_dssp EEESCHHHHHSSCSEEEECSCGGGHHHH-HHHHHHHHHTTTCEEEECCTTCCHHHHHH
T ss_pred EEeCChHHHHhcCCeEEEEeCHHHHHHH-HHHHHhhccCCCeEEEEecCCCCHHHHHH
Confidence 6778889999999999999976655442 3455554 554447887766666655543
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.032 Score=54.36 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=64.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. .-+..++..|.+.|.+|.+||+.....+.... .++....
T Consensus 31 ~~I~iIG~G----------~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~~ 78 (316)
T 2uyy_A 31 KKIGFLGLG----------LMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ----------------------EGARLGR 78 (316)
T ss_dssp SCEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH----------------------TTCEECS
T ss_pred CeEEEEccc----------HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------cCCEEcC
Confidence 589999974 37888999999999999999986443221111 1244567
Q ss_pred ChhhhcccCcEEEEeecCcc-cccccHHH---HHhhcCCCCEEEEcCCCC
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLDYQK---IYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~~~~---~~~~~~~~~~i~D~~~~~ 450 (480)
++.++++++|+|+++++.+. .++. ... +...+.+..+|+|..+..
T Consensus 79 ~~~~~~~~~DvVi~av~~~~~~~~v-~~~~~~~~~~l~~~~~vv~~s~~~ 127 (316)
T 2uyy_A 79 TPAEVVSTCDITFACVSDPKAAKDL-VLGPSGVLQGIRPGKCYVDMSTVD 127 (316)
T ss_dssp CHHHHHHHCSEEEECCSSHHHHHHH-HHSTTCGGGGCCTTCEEEECSCCC
T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHH-HcCchhHhhcCCCCCEEEECCCCC
Confidence 88888999999999999543 2221 111 123455666999998865
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.067 Score=55.58 Aligned_cols=115 Identities=9% Similarity=0.175 Sum_probs=77.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+|+|+|+. +....++..|.+.|.+|.+||...... .+...++ . .| ...++....
T Consensus 3 kIgVIG~G----------~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g---~---~~---------~~~~i~~~~ 57 (478)
T 1pgj_A 3 DVGVVGLG----------VMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA---S---AP---------FAGNLKAFE 57 (478)
T ss_dssp SEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---T---ST---------TGGGEEECS
T ss_pred EEEEEChH----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC---C---CC---------CCCCeEEEC
Confidence 69999974 488899999999999999999853322 1211111 0 00 012366778
Q ss_pred Chhhhcc---cCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011650 405 DAYEATK---DSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~---~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG 466 (480)
+++++++ ++|+|+++++.. ..++. .+.+...+++..+|+|+.+..... .+.+.|+.|.+.+
T Consensus 58 ~~~e~v~~l~~aDvVilaVp~~~~v~~v-l~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~p 128 (478)
T 1pgj_A 58 TMEAFAASLKKPRKALILVQAGAATDST-IEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG 128 (478)
T ss_dssp CHHHHHHHBCSSCEEEECCCCSHHHHHH-HHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHhcccCCCEEEEecCChHHHHHH-HHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEee
Confidence 8888777 499999999986 44442 356667776666999998877432 2234577776654
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.036 Score=52.04 Aligned_cols=100 Identities=12% Similarity=0.203 Sum_probs=67.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----eEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA----RLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.||+|+|+. .....+++.|.+.|. +|.+||+.-...+ +...+ +
T Consensus 3 ~~i~iIG~G----------~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~----------------------g 50 (247)
T 3gt0_A 3 KQIGFIGCG----------NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY----------------------G 50 (247)
T ss_dssp CCEEEECCS----------HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH----------------------C
T ss_pred CeEEEECcc----------HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh----------------------C
Confidence 479999974 378899999999998 9999998643221 11112 3
Q ss_pred eEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
+....+..++++++|+|+++++-..+.+. ++++...+++..+|+..-+-++.+.+++
T Consensus 51 ~~~~~~~~e~~~~aDvVilav~~~~~~~v-~~~l~~~l~~~~~vvs~~~gi~~~~l~~ 107 (247)
T 3gt0_A 51 LTTTTDNNEVAKNADILILSIKPDLYASI-INEIKEIIKNDAIIVTIAAGKSIESTEN 107 (247)
T ss_dssp CEECSCHHHHHHHCSEEEECSCTTTHHHH-C---CCSSCTTCEEEECSCCSCHHHHHH
T ss_pred CEEeCChHHHHHhCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEecCCCCHHHHHH
Confidence 56678899999999999999965554432 2344444554558886666666655543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.073 Score=54.53 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=68.3
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC---------
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST--------- 396 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 396 (480)
+|+|+|+.| -...++..|.+.|.+|.++|..-.. +. .+.... -|+. .++.
T Consensus 2 kI~VIG~G~----------vG~~~A~~la~~G~~V~~~d~~~~~--~~-~l~~~~----~~i~----e~~l~~~~~~~~~ 60 (436)
T 1mv8_A 2 RISIFGLGY----------VGAVCAGCLSARGHEVIGVDVSSTK--ID-LINQGK----SPIV----EPGLEALLQQGRQ 60 (436)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHH--HH-HHHTTC----CSSC----CTTHHHHHHHHHH
T ss_pred EEEEECCCH----------HHHHHHHHHHHCCCEEEEEECCHHH--HH-HHhCCC----CCcC----CCCHHHHHHhhcc
Confidence 799999877 8999999999999999999975332 21 121000 0110 0000
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcc--ccccc-------HHHHHhhcCC---CCEEEEcCCCCC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDE--FKNLD-------YQKIYNNMQK---PAFVFDGRNILD 451 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~--~~~~~-------~~~~~~~~~~---~~~i~D~~~~~~ 451 (480)
...+...+++.++++++|+++++++-+. ....| .+.+...+++ ..+|++...+..
T Consensus 61 ~g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~ 127 (436)
T 1mv8_A 61 TGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLP 127 (436)
T ss_dssp TTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCT
T ss_pred cCceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCC
Confidence 1236778888889999999999997654 11222 2455556665 568999766553
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.068 Score=52.70 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eC-CHHHHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DI-SVPRINAW 42 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~-~~~~v~~l 42 (480)
|+||||+|.|++|.-+...+..+ +..+|.++ |. +.+....+
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~-~~veiv~i~~~~~~~~~a~l 43 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKR-SDIEIVAINDLLDADYMAYM 43 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSCHHHHHHH
T ss_pred CeEEEEECcCHHHHHHHHHHHcC-CCeEEEEEcCCCChhHHhHh
Confidence 67999999999999999988875 56777765 43 35544433
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.076 Score=55.14 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC-------
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST------- 396 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 396 (480)
.-||+|+|+.| -.+.++..|.+.|.+|.+||..-.. +. .+.... -|+ . .++.
T Consensus 8 ~~~I~VIG~G~----------vG~~lA~~la~~G~~V~~~d~~~~~--v~-~l~~~~----~~i--~--e~gl~~~l~~~ 66 (478)
T 2y0c_A 8 SMNLTIIGSGS----------VGLVTGACLADIGHDVFCLDVDQAK--ID-ILNNGG----VPI--H--EPGLKEVIARN 66 (478)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHH--HH-HHHTTC----CSS--C--CTTHHHHHHHH
T ss_pred CceEEEECcCH----------HHHHHHHHHHhCCCEEEEEECCHHH--HH-HHHCCC----CCc--C--CCCHHHHHHHh
Confidence 45999999988 8999999999999999999974322 21 121000 010 0 0110
Q ss_pred --cCceEEecChhhhcccCcEEEEeecCc---------ccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 397 --INQVIVASDAYEATKDSHGVCILTEWD---------EFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 397 --~~~~~~~~~~~~a~~~~d~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
...+++.+++.++++++|+++++++-| .+..--.+.+...+++..+|++...+..
T Consensus 67 ~~~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~ 132 (478)
T 2y0c_A 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPV 132 (478)
T ss_dssp HHTTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCT
T ss_pred cccCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCC
Confidence 124678888888999999999998875 2222223456666776778898875543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.022 Score=54.74 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=47.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHH--HHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVPRI--NAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|+|.|.|. |.+|..++..|++. | ++|+++++++++. +.+......+.. +.+.-..++.++++
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~--g~~~V~~~~R~~~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~ 71 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED--GTFKVRVVTRNPRKKAAKELRLQGAEVVQ------------GDQDDQVIMELALN 71 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CSSEEEEEESCTTSHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHhc--CCceEEEEEcCCCCHHHHHHHHCCCEEEE------------ecCCCHHHHHHHHh
Confidence 57999997 99999999999998 7 9999999987643 233321111100 00100123445678
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++|+||.|.+
T Consensus 72 ~~d~vi~~a~ 81 (299)
T 2wm3_A 72 GAYATFIVTN 81 (299)
T ss_dssp TCSEEEECCC
T ss_pred cCCEEEEeCC
Confidence 8999999864
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.11 Score=50.75 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=51.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC---HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cCH---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS---VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TDV--- 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~---~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d~--- 72 (480)
.++.|+|+|-+|.+++..|++. |. +|++++|+ .++.+++.+. +-.. ....+... .+.
T Consensus 149 k~~lVlGAGGaaraia~~L~~~--G~~~v~v~nRt~~~~~~a~~la~~-----------~~~~-~~~~v~~~~~~~l~~~ 214 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIE--GIKEIKLFNRKDDFFEKAVAFAKR-----------VNEN-TDCVVTVTDLADQHAF 214 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTHHHHHHHHHHH-----------HHHH-SSCEEEEEETTCHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCEEEEEECCCchHHHHHHHHHH-----------hhhc-cCcceEEechHhhhhh
Confidence 4789999999999999999998 87 89999999 7777766531 0000 00112222 232
Q ss_pred HHHhhcCCEEEEEccCC
Q 011650 73 EKHVREANIVFVSVNTP 89 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp 89 (480)
.+.+.++|+||-|+|..
T Consensus 215 ~~~l~~~DiIINaTp~G 231 (312)
T 3t4e_A 215 TEALASADILTNGTKVG 231 (312)
T ss_dssp HHHHHHCSEEEECSSTT
T ss_pred HhhccCceEEEECCcCC
Confidence 44578999999998754
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.091 Score=52.64 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=48.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCC----HHHH----HHHHcCCCCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS----VPRI----NAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~----~~~v----~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
.||.|+|.|.+|..+|..|... |. +|+++|++ .++. +.+++ .+.+. .....-..++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~--G~~~I~v~Dr~Gli~~~R~~~~L~~~k~-----------~~A~~--~~~~~~~~~L 257 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDL--GVKNVVAVDRKGILNENDPETCLNEYHL-----------EIARI--TNPERLSGDL 257 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETTEECCTTSGGGCSSHHHH-----------HHHHT--SCTTCCCSCH
T ss_pred cEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCCcccCCCcccccCHHHH-----------HHHHh--hhccCchhhH
Confidence 4899999999999999999988 77 89999997 4441 11111 11111 0011124578
Q ss_pred HHHhhcCCEEEEEcc
Q 011650 73 EKHVREANIVFVSVN 87 (480)
Q Consensus 73 ~~a~~~aDvVii~Vp 87 (480)
+++++++|++|=+..
T Consensus 258 ~eav~~ADVlIG~Sa 272 (388)
T 1vl6_A 258 ETALEGADFFIGVSR 272 (388)
T ss_dssp HHHHTTCSEEEECSC
T ss_pred HHHHccCCEEEEeCC
Confidence 999999999887754
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.017 Score=58.16 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=52.1
Q ss_pred ceEEEECCChhHHHHH-HHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHHHhcCCCEEE-ecC---HHHH
Q 011650 2 VKICCIGAGYVGGPTM-AVIALKCPSIEVAVVDISVPRINAWNSDQL-PIYEPGLEEVVKQCRGKNLFF-STD---VEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA-~~La~~~~G~~V~~~D~~~~~v~~l~~g~~-~~~e~~l~~~~~~~~~~~l~~-t~d---~~~a 75 (480)
||+..+|.|++|..+- ..|.+. |++|+..|+++..+++|++.+. .+...|.++....+ .+++. .++ +-+.
T Consensus 1 mkavhfGaGniGRGfig~~l~~~--g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v--~~v~ai~s~~~~~~~~ 76 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADA--GIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTV--SGVNAVSSIGDDVVDL 76 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHT--TCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEE--ESCEEEETTSSHHHHH
T ss_pred CcEEEECCCccchhhHHHHHHHc--CCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEE--EEEEEEeCcHHHHHHH
Confidence 8999999999996655 455565 9999999999999999996432 22211211000000 12232 122 3335
Q ss_pred hhcCCEEEEEcc
Q 011650 76 VREANIVFVSVN 87 (480)
Q Consensus 76 ~~~aDvVii~Vp 87 (480)
+.++|+|.++++
T Consensus 77 i~~adlitT~vG 88 (382)
T 3h2z_A 77 IAQVDLVTTAVG 88 (382)
T ss_dssp HTTCSEEEECCC
T ss_pred HcCCCEEEECCC
Confidence 679999988875
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.05 Score=55.80 Aligned_cols=117 Identities=10% Similarity=0.104 Sum_probs=66.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.|||+|..|.+.|..|+++ |++|+++|.....- +...+. .| -++..-....+.+.++|+
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~-----~~~~l~-~G----------~~~~~g~~~~~~~~~~d~ 67 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPP-----GLDKLP-EA----------VERHTGSLNDEWLMAADL 67 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSSSCT-----TGGGSC-TT----------SCEEESSCCHHHHHTCSE
T ss_pred CEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCCCcc-----hhHHhh-CC----------CEEEECCCcHHHhccCCE
Confidence 6899999999999999888887 99999999864210 000000 01 112212222445678999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHH-------HHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWES-------AARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~-------~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
||++..-|.+ .|.+...++ -.+.+...+ +..+|-+..|..-+||.. +..+|++.+
T Consensus 68 vV~s~gi~~~--------~p~~~~a~~~~~~v~~~~~~~~~~~-~~~vI~VTGTnGKTTT~~ml~~iL~~~g 130 (439)
T 2x5o_A 68 IVASPGIALA--------HPSLSAAADAGIEIVGDIELFCREA-QAPIVAITGSNGKSTVTTLVGEMAKAAG 130 (439)
T ss_dssp EEECTTSCTT--------CHHHHHHHHTTCEEECHHHHHHHHC-CSCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 9887433221 122211100 001122233 356777777887666655 567777653
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.061 Score=51.24 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=63.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|.. .-+..+++.|.+.|.+|.+||+.....+....++ ... ....+
T Consensus 2 ~i~iiG~G----------~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g------------------~~~--~~~~~ 51 (279)
T 2f1k_A 2 KIGVVGLG----------LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ------------------LVD--EAGQD 51 (279)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT------------------SCS--EEESC
T ss_pred EEEEEcCc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCC------------------CCc--cccCC
Confidence 68999964 4788899999999999999998643222111111 000 23567
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
+.++ +++|+|+++++.+...+. .+++...+++..+|+|..++
T Consensus 52 ~~~~-~~~D~vi~av~~~~~~~~-~~~l~~~~~~~~~vv~~~~~ 93 (279)
T 2f1k_A 52 LSLL-QTAKIIFLCTPIQLILPT-LEKLIPHLSPTAIVTDVASV 93 (279)
T ss_dssp GGGG-TTCSEEEECSCHHHHHHH-HHHHGGGSCTTCEEEECCSC
T ss_pred HHHh-CCCCEEEEECCHHHHHHH-HHHHHhhCCCCCEEEECCCC
Confidence 7787 999999999998755442 34566666666799998553
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.021 Score=50.47 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.8
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|..|+.+|..|++. |.+|+++++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~--g~~v~lie~~~ 34 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARA--GLKVLVLDGGR 34 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 67999999999999999999998 99999999875
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.11 Score=51.45 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~-~V~~~D~~ 35 (480)
|||.|.| .|.+|..++..|+++ |+ +|+..|++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~--g~~~v~~~d~~ 34 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ 34 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CCCEEEECCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 7999999 799999999999998 88 99999984
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.063 Score=50.70 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=61.6
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|+. .....+++.|.+.|++|.+||+.-.++... .+.. .++. ++
T Consensus 2 ~I~iIG~G----------~mG~~la~~l~~~g~~V~~~~~~~~~~~~~-~~~~-------------------~g~~--~~ 49 (264)
T 1i36_A 2 RVGFIGFG----------EVAQTLASRLRSRGVEVVTSLEGRSPSTIE-RART-------------------VGVT--ET 49 (264)
T ss_dssp EEEEESCS----------HHHHHHHHHHHHTTCEEEECCTTCCHHHHH-HHHH-------------------HTCE--EC
T ss_pred eEEEEech----------HHHHHHHHHHHHCCCeEEEeCCccCHHHHH-HHHH-------------------CCCc--CC
Confidence 68999974 478899999999999999999842332221 1110 1233 56
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
+.++++++|+|+++++.+..... ...+...++ + +|+|..+.-
T Consensus 50 ~~~~~~~aDvvi~~v~~~~~~~~-~~~~~~~~~-~-~vi~~s~~~ 91 (264)
T 1i36_A 50 SEEDVYSCPVVISAVTPGVALGA-ARRAGRHVR-G-IYVDINNIS 91 (264)
T ss_dssp CHHHHHTSSEEEECSCGGGHHHH-HHHHHTTCC-S-EEEECSCCC
T ss_pred HHHHHhcCCEEEEECCCHHHHHH-HHHHHHhcC-c-EEEEccCCC
Confidence 77888999999999998753321 245555554 4 899996553
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.13 Score=50.09 Aligned_cols=63 Identities=13% Similarity=-0.031 Sum_probs=47.3
Q ss_pred eEEEE-CC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 3 KICCI-GA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 3 kI~VI-Gl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+++|| |. |.+|...+..|.+. |++ .++++|+.+. +. .+ .++.+..+++++.+ .
T Consensus 15 siaVV~Gasg~~G~~~~~~l~~~--G~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~ 71 (305)
T 2fp4_A 15 TKVICQGFTGKQGTFHSQQALEY--GTN-LVGGTTPGKG-----GK-TH--------------LGLPVFNTVKEAKEQTG 71 (305)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred cEEEEECCCCCHHHHHHHHHHHC--CCc-EEEEeCCCcC-----cc-eE--------------CCeeeechHHHhhhcCC
Confidence 58888 98 99999999999988 898 4567766421 00 00 24677778888777 7
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|++++++|.
T Consensus 72 vD~avI~vP~ 81 (305)
T 2fp4_A 72 ATASVIYVPP 81 (305)
T ss_dssp CCEEEECCCH
T ss_pred CCEEEEecCH
Confidence 9999999984
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.092 Score=44.93 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=73.0
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.++|+|+|++-|+ ++.+..+++.|.+.|++|.--+|....+++ .++...
T Consensus 13 p~~vaVvGas~~~------g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i-------------------------~G~~~~ 61 (140)
T 1iuk_A 13 AKTIAVLGAHKDP------SRPAHYVPRYLREQGYRVLPVNPRFQGEEL-------------------------FGEEAV 61 (140)
T ss_dssp CCEEEEETCCSST------TSHHHHHHHHHHHTTCEEEEECGGGTTSEE-------------------------TTEECB
T ss_pred CCEEEEECCCCCC------CChHHHHHHHHHHCCCEEEEeCCCcccCcC-------------------------CCEEec
Confidence 5799999998776 578999999999999997777775211111 245666
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE---KLRKIGFIVYS 464 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~ 464 (480)
.|+.+.-+..|.++|.++-+.-.+. .+++.+.- ...+++. .+....+ ..++.|+++.|
T Consensus 62 ~sl~el~~~vDlavi~vp~~~~~~v-~~~~~~~g-i~~i~~~-~g~~~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 62 ASLLDLKEPVDILDVFRPPSALMDH-LPEVLALR-PGLVWLQ-SGIRHPEFEKALKEAGIPVVA 122 (140)
T ss_dssp SSGGGCCSCCSEEEECSCHHHHTTT-HHHHHHHC-CSCEEEC-TTCCCHHHHHHHHHTTCCEEE
T ss_pred CCHHHCCCCCCEEEEEeCHHHHHHH-HHHHHHcC-CCEEEEc-CCcCHHHHHHHHHHcCCEEEc
Confidence 7888877789999999988554442 33444442 2345554 5556644 34467999876
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.019 Score=56.81 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=45.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCC-------CCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCE-EEec--
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCP-------SIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNL-FFST-- 70 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~-------G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l-~~t~-- 70 (480)
+||+|||+|.||..++..+.+. + +.+|. ++|+++++.+.. ..++++......+.+ .+++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~-~~~~~~g~~~~vvaV~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 76 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSF-NEENRLGLKFNVVFVADSLHSYYNER---------IDIGKVISYKEKGSLDSLEYES 76 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH-HHHCSSSEEEEEEEEECSSCEEECTT---------CCHHHHHHHHHTTCGGGCCSEE
T ss_pred EeEEEEecCHHHHHHHHHHHhC-hHHHhcCCcEEEEEEEECChHHhhcc---------cChHHHhhhhccCCcccccCCC
Confidence 4799999999999999998764 1 24554 567776442210 011111110001112 1344
Q ss_pred -CHHHHh-hcCCEEEEEccCC
Q 011650 71 -DVEKHV-REANIVFVSVNTP 89 (480)
Q Consensus 71 -d~~~a~-~~aDvVii~Vptp 89 (480)
|+++.+ .+.|+|++|+|+.
T Consensus 77 ~d~~~ll~~~iDvVv~~t~~~ 97 (331)
T 3c8m_A 77 ISASEALARDFDIVVDATPAS 97 (331)
T ss_dssp CCHHHHHHSSCSEEEECSCCC
T ss_pred CCHHHHhCCCCCEEEECCCCC
Confidence 787765 3689999998863
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.018 Score=54.72 Aligned_cols=73 Identities=10% Similarity=0.182 Sum_probs=47.0
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
||.|.|. |.+|..++..|+++.+|++|+++++++++.+.+......+.. +.+.-..++.++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ------------ADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEE------------cCCCCHHHHHHHHhCCCE
Confidence 5889986 999999999998742379999999987765554432111100 011001223456778999
Q ss_pred EEEEcc
Q 011650 82 VFVSVN 87 (480)
Q Consensus 82 Vii~Vp 87 (480)
||-+..
T Consensus 69 vi~~a~ 74 (286)
T 2zcu_A 69 LLLISS 74 (286)
T ss_dssp EEECC-
T ss_pred EEEeCC
Confidence 998865
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.16 Score=49.12 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCC
Q 011650 307 KTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++. ++..+.++.+++|.|+|.+- .-...++..|.+.|+.|.+.+-.
T Consensus 149 p~gi~~l-l~~~~i~l~gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~-------------------- 198 (301)
T 1a4i_A 149 PKGCLEL-IKETGVPIAGRHAVVVGRSK---------IVGAPMHDLLLWNNATVTTCHSK-------------------- 198 (301)
T ss_dssp HHHHHHH-HHTTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTT--------------------
T ss_pred HHHHHHH-HHHcCCCCCCCEEEEECCCc---------hHHHHHHHHHHhCCCeEEEEECC--------------------
Confidence 3333333 34445578999999999621 35788999999999999998622
Q ss_pred CCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC
Q 011650 387 IHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI 449 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~ 449 (480)
..++.+.++.||.||.++..+.|-.-+| +++.++|||.---
T Consensus 199 ----------------t~~L~~~~~~ADIVI~Avg~p~~I~~~~------vk~GavVIDVgi~ 239 (301)
T 1a4i_A 199 ----------------TAHLDEEVNKGDILVVATGQPEMVKGEW------IKPGAIVIDCGIN 239 (301)
T ss_dssp ----------------CSSHHHHHTTCSEEEECCCCTTCBCGGG------SCTTCEEEECCCB
T ss_pred ----------------cccHHHHhccCCEEEECCCCcccCCHHH------cCCCcEEEEccCC
Confidence 1356788999999999999998844333 3556799998653
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=58.19 Aligned_cols=30 Identities=13% Similarity=0.437 Sum_probs=24.1
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCC---eEEEEe
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSI---EVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D 33 (480)
|||+||| .|++|.-+...|.++ +| ++..+.
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~--~~p~~el~~~a 36 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES--TLPIDKIRYLA 36 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC--CCCEEEEEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC--CCCcEEEEEEE
Confidence 6999999 799999999988875 44 445554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.12 Score=44.62 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=66.7
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHh-hhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQR-DLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
...+.+|+|+|... -+..+++.|.+.|++|.++|+....-+... .++ ..
T Consensus 16 ~~~~~~v~IiG~G~----------iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g--------------------~~ 65 (155)
T 2g1u_A 16 KQKSKYIVIFGCGR----------LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFS--------------------GF 65 (155)
T ss_dssp -CCCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCC--------------------SE
T ss_pred ccCCCcEEEECCCH----------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCC--------------------Cc
Confidence 45678999999644 788999999999999999998533211100 000 00
Q ss_pred eEEe-----cChhhh-cccCcEEEEeecCcccccccHHHHHhh-cCCCCEEEEcCCCCChHHHhhcCcE
Q 011650 400 VIVA-----SDAYEA-TKDSHGVCILTEWDEFKNLDYQKIYNN-MQKPAFVFDGRNILDVEKLRKIGFI 461 (480)
Q Consensus 400 ~~~~-----~~~~~a-~~~~d~~vi~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~~~~~~~~~~~~g~~ 461 (480)
+... +.+.++ ++++|+||++|+.++....-. .+... .+...+|....+.-..+.+++.|..
T Consensus 66 ~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~-~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~ 133 (155)
T 2g1u_A 66 TVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFFIS-MNARYMFNVENVIARVYDPEKIKIFEENGIK 133 (155)
T ss_dssp EEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHH-HHHHHTSCCSEEEEECSSGGGHHHHHTTTCE
T ss_pred EEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHH-HHHHHHCCCCeEEEEECCHHHHHHHHHCCCc
Confidence 1000 112333 678999999999876433222 23333 3344567777766666666666654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.23 Score=48.01 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=61.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHH-hhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKH-VREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-~~~a 79 (480)
++|..||||..|.+ +..+++. +|.+|+++|++++.++..++. +++....++++ ..|..+. -...
T Consensus 124 ~rVLDIGcG~G~~t-a~~lA~~-~ga~V~gIDis~~~l~~Ar~~------------~~~~gl~~v~~v~gDa~~l~d~~F 189 (298)
T 3fpf_A 124 ERAVFIGGGPLPLT-GILLSHV-YGMRVNVVEIEPDIAELSRKV------------IEGLGVDGVNVITGDETVIDGLEF 189 (298)
T ss_dssp CEEEEECCCSSCHH-HHHHHHT-TCCEEEEEESSHHHHHHHHHH------------HHHHTCCSEEEEESCGGGGGGCCC
T ss_pred CEEEEECCCccHHH-HHHHHHc-cCCEEEEEECCHHHHHHHHHH------------HHhcCCCCeEEEECchhhCCCCCc
Confidence 57999999997654 3334553 488999999999998876641 01100024444 2343331 1467
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
|+|+++.-. +| ...+++.+...+++|..++...
T Consensus 190 DvV~~~a~~------------~d---~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 190 DVLMVAALA------------EP---KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp SEEEECTTC------------SC---HHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEECCCc------------cC---HHHHHHHHHHHcCCCcEEEEEc
Confidence 999986431 12 2567889999999988776544
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0088 Score=59.54 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=48.5
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEE-EecCHHHHhh
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~ 77 (480)
||+|.|.| .|++|..++..|.++ +|++|++++++++..+.+... ...+.. +.+. -..++.++++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~~~~~~~v~~~~------------~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRLGDLVKHERMHFFE------------GDITINKEWVEYHVK 90 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH-SSCEEEEEESCCTTTGGGGGSTTEEEEE------------CCTTTCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCCEEEEEeCChhhhhhhccCCCeEEEe------------CccCCCHHHHHHHhc
Confidence 57899999 699999999999875 379999999987665444321 100000 1110 0112344567
Q ss_pred cCCEEEEEcc
Q 011650 78 EANIVFVSVN 87 (480)
Q Consensus 78 ~aDvVii~Vp 87 (480)
++|+||-|..
T Consensus 91 ~~d~Vih~A~ 100 (372)
T 3slg_A 91 KCDVILPLVA 100 (372)
T ss_dssp HCSEEEECBC
T ss_pred cCCEEEEcCc
Confidence 8999998764
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.022 Score=56.05 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=30.6
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|+|.|.| .|++|..++..|.++ |++|++++++.
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 59 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKL--NQVVIGLDNFS 59 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence 37899999 599999999999998 99999999953
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.035 Score=47.45 Aligned_cols=90 Identities=11% Similarity=0.140 Sum_probs=63.2
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+++|+|+|.. .-+..+++.|.+.|++|.++|...... .+...++ -.+..
T Consensus 21 ~~~v~iiG~G----------~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~--------------------~~~~~ 70 (144)
T 3oj0_A 21 GNKILLVGNG----------MLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE--------------------YEYVL 70 (144)
T ss_dssp CCEEEEECCS----------HHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT--------------------CEEEE
T ss_pred CCEEEEECCC----------HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC--------------------CceEe
Confidence 7899999963 367889999999999999999864432 2222221 12334
Q ss_pred ecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCC
Q 011650 403 ASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRN 448 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~ 448 (480)
.++++++++++|+||.+|+.+..- ++. +.+++..+|+|.-.
T Consensus 71 ~~~~~~~~~~~Divi~at~~~~~~-~~~----~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 71 INDIDSLIKNNDVIITATSSKTPI-VEE----RSLMPGKLFIDLGN 111 (144)
T ss_dssp CSCHHHHHHTCSEEEECSCCSSCS-BCG----GGCCTTCEEEECCS
T ss_pred ecCHHHHhcCCCEEEEeCCCCCcE-eeH----HHcCCCCEEEEccC
Confidence 568889999999999999976432 222 34455678999854
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.26 Score=42.80 Aligned_cols=114 Identities=13% Similarity=0.154 Sum_probs=66.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh----h
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV----R 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~----~ 77 (480)
++|.-+|+|. |. ++..+++..++.+|+++|++++.++..++.... .++ ..++.+..|..+.+ .
T Consensus 27 ~~vldiG~G~-G~-~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~--------~~~~~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 27 ETLWDIGGGS-GS-IAIEWLRSTPQTTAVCFEISEERRERILSNAIN---LGV--------SDRIAVQQGAPRAFDDVPD 93 (178)
T ss_dssp EEEEEESTTT-TH-HHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT---TTC--------TTSEEEECCTTGGGGGCCS
T ss_pred CeEEEeCCCC-CH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH---hCC--------CCCEEEecchHhhhhccCC
Confidence 3688999997 44 345556554578999999999988876642000 000 11333334432223 4
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
..|+|++.-+.. . ...++.+...++++..++.. +........+...+++.+
T Consensus 94 ~~D~i~~~~~~~----------~------~~~l~~~~~~L~~gG~l~~~-~~~~~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 94 NPDVIFIGGGLT----------A------PGVFAAAWKRLPVGGRLVAN-AVTVESEQMLWALRKQFG 144 (178)
T ss_dssp CCSEEEECC-TT----------C------TTHHHHHHHTCCTTCEEEEE-ECSHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCccc----------H------HHHHHHHHHhcCCCCEEEEE-eeccccHHHHHHHHHHcC
Confidence 589998664321 0 34577788889987776653 333444445556666543
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.018 Score=59.76 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=31.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|.|||.|.-|++.|..|+++ |++|++++.+.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~--G~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA--GIPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT--TCCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHC--CCcEEEEccCC
Confidence 78999999999999999999998 99999999864
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.012 Score=58.86 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
||+|.|.|. |++|..++..|++. |++|+++++++..
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~ 65 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHE--GHYVIASDWKKNE 65 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCS
T ss_pred CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEECCCcc
Confidence 578999997 99999999999998 9999999997643
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.073 Score=50.33 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=32.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~ 43 (480)
.+|.|||+|.+|..+|..|+.. |. +++++|.+.-....++
T Consensus 29 ~~VlvvG~GglG~~va~~La~~--Gvg~i~lvD~d~v~~sNL~ 69 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGA--GVGTLVLADDDDVHLSNLQ 69 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCSEEEEECCCBCCGGGTT
T ss_pred CcEEEEccCHHHHHHHHHHHHc--CCCeEEEEeCCCcccccCC
Confidence 4799999999999999999998 65 7899998753333333
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.064 Score=49.31 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
..+|+|+|... -+..+++.|.+.|.+|.++|+... .. ..+. ..++...
T Consensus 28 ~~~I~iiG~G~----------~G~~la~~l~~~g~~V~~~~r~~~--~~-~~~~-------------------~~g~~~~ 75 (215)
T 2vns_A 28 APKVGILGSGD----------FARSLATRLVGSGFKVVVGSRNPK--RT-ARLF-------------------PSAAQVT 75 (215)
T ss_dssp -CCEEEECCSH----------HHHHHHHHHHHTTCCEEEEESSHH--HH-HHHS-------------------BTTSEEE
T ss_pred CCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCCHH--HH-HHHH-------------------HcCCcee
Confidence 45899999643 688899999999999999998532 22 1221 0123444
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHH
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEK 454 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~ 454 (480)
++.++++++|+|++++....++++- + +.... +..+|+|..+-+....
T Consensus 76 -~~~~~~~~~DvVi~av~~~~~~~v~-~-l~~~~-~~~~vv~~s~g~~~~~ 122 (215)
T 2vns_A 76 -FQEEAVSSPEVIFVAVFREHYSSLC-S-LSDQL-AGKILVDVSNPTEQEH 122 (215)
T ss_dssp -EHHHHTTSCSEEEECSCGGGSGGGG-G-GHHHH-TTCEEEECCCCCHHHH
T ss_pred -cHHHHHhCCCEEEECCChHHHHHHH-H-HHHhc-CCCEEEEeCCCccccc
Confidence 6788899999999999976665532 1 43334 3459999999886543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.037 Score=53.16 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=65.5
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|++ ..-...+++.|.+.|.+|.+||+.....+....+ ++.. .
T Consensus 12 m~I~iIG~t---------G~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~----------------------g~~~-~ 59 (286)
T 3c24_A 12 KTVAILGAG---------GKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGM----------------------GIPL-T 59 (286)
T ss_dssp CEEEEETTT---------SHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT----------------------TCCC-C
T ss_pred CEEEEECCC---------CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc----------------------CCCc-C
Confidence 489999961 2378899999999999999999853321111111 1222 2
Q ss_pred ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH
Q 011650 405 DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE 453 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~ 453 (480)
+..++++++|+|+++++.+..++. .+++...+++..+|+|+.+..+.+
T Consensus 60 ~~~~~~~~aDvVi~av~~~~~~~v-~~~l~~~l~~~~ivv~~s~~~~~~ 107 (286)
T 3c24_A 60 DGDGWIDEADVVVLALPDNIIEKV-AEDIVPRVRPGTIVLILDAAAPYA 107 (286)
T ss_dssp CSSGGGGTCSEEEECSCHHHHHHH-HHHHGGGSCTTCEEEESCSHHHHH
T ss_pred CHHHHhcCCCEEEEcCCchHHHHH-HHHHHHhCCCCCEEEECCCCchhH
Confidence 566788999999999998775442 245555566566999987765433
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.029 Score=53.96 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=63.1
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
.+|+|+|+. .-+..+++.|.+.|.+|.+|| .....+.... .++....
T Consensus 4 m~i~iiG~G----------~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~----------------------~g~~~~~ 50 (295)
T 1yb4_A 4 MKLGFIGLG----------IMGSPMAINLARAGHQLHVTT-IGPVADELLS----------------------LGAVNVE 50 (295)
T ss_dssp CEEEECCCS----------TTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT----------------------TTCBCCS
T ss_pred CEEEEEccC----------HHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH----------------------cCCcccC
Confidence 489999974 478899999999999999999 5433221111 1244567
Q ss_pred ChhhhcccCcEEEEeecCcc-cccccH--HHHHhhcCCCCEEEEcCCCC
Q 011650 405 DAYEATKDSHGVCILTEWDE-FKNLDY--QKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~ 450 (480)
++.++++++|+|+++++.+. .+..-. +.+...+++..+|+|..+..
T Consensus 51 ~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~ 99 (295)
T 1yb4_A 51 TARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSIS 99 (295)
T ss_dssp SHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCC
T ss_pred CHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCC
Confidence 88898999999999997764 222110 02223455566899998874
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.16 Score=48.72 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCC
Q 011650 307 KTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHP 386 (480)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~ 386 (480)
|.-+++ +++..+.++.+++|.|+|.+- .-...++..|.+.|+.|.+.+-.
T Consensus 143 p~gi~~-ll~~~~i~l~gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~-------------------- 192 (288)
T 1b0a_A 143 PRGIVT-LLERYNIDTFGLNAVVIGASN---------IVGRPMSMELLLAGCTTTVTHRF-------------------- 192 (288)
T ss_dssp HHHHHH-HHHHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHTTTCEEEEECSS--------------------
T ss_pred HHHHHH-HHHHcCCCCCCCEEEEECCCh---------HHHHHHHHHHHHCCCeEEEEeCC--------------------
Confidence 333444 334455678999999999632 24788999999999999998621
Q ss_pred CCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 387 IHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
..++.+.++.||.||.++..+.|-.-+| .++..+|||.-
T Consensus 193 ----------------t~~L~~~~~~ADIVI~Avg~p~lI~~~~------vk~GavVIDVg 231 (288)
T 1b0a_A 193 ----------------TKNLRHHVENADLLIVAVGKPGFIPGDW------IKEGAIVIDVG 231 (288)
T ss_dssp ----------------CSCHHHHHHHCSEEEECSCCTTCBCTTT------SCTTCEEEECC
T ss_pred ----------------chhHHHHhccCCEEEECCCCcCcCCHHH------cCCCcEEEEcc
Confidence 1356788999999999999998744333 35667999975
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.021 Score=56.07 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=31.4
Q ss_pred CceEEEECCChhHHHHHHHHHH---cCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~---~~~G~~V~~~D~~~ 36 (480)
|++|+|||.|..|+.+|..|++ . |++|+++|.+.
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCC
Confidence 6789999999999999999999 7 99999999864
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.052 Score=52.01 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+++++|+|+|.. ..+..++..|.+.|++|.++|+.... . ..+. ..-++
T Consensus 126 ~~~~~~v~iiGaG----------~~g~aia~~L~~~g~~V~v~~r~~~~--~-~~l~------------------~~~g~ 174 (275)
T 2hk9_A 126 EVKEKSILVLGAG----------GASRAVIYALVKEGAKVFLWNRTKEK--A-IKLA------------------QKFPL 174 (275)
T ss_dssp TGGGSEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSSHHH--H-HHHT------------------TTSCE
T ss_pred CcCCCEEEEECch----------HHHHHHHHHHHHcCCEEEEEECCHHH--H-HHHH------------------HHcCC
Confidence 4578899999953 47788999999999999999986432 1 1121 00124
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHH-HhhcCCCCEEEEcCCCCCh---HHHhhcCcEE
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKI-YNNMQKPAFVFDGRNILDV---EKLRKIGFIV 462 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~~~~~~---~~~~~~g~~y 462 (480)
...+++.++++++|+||++|+-..+.+... .+ ...+++..+|+|.-. ... +..++.|.++
T Consensus 175 ~~~~~~~~~~~~aDiVi~atp~~~~~~~~~-~i~~~~l~~g~~viDv~~-~~t~ll~~a~~~g~~~ 238 (275)
T 2hk9_A 175 EVVNSPEEVIDKVQVIVNTTSVGLKDEDPE-IFNYDLIKKDHVVVDIIY-KETKLLKKAKEKGAKL 238 (275)
T ss_dssp EECSCGGGTGGGCSEEEECSSTTSSTTCCC-SSCGGGCCTTSEEEESSS-SCCHHHHHHHHTTCEE
T ss_pred eeehhHHhhhcCCCEEEEeCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC-ChHHHHHHHHHCcCEE
Confidence 455577888999999999999876532110 01 234555669999988 442 2334567765
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.0058 Score=55.94 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
+.+.+|+|+|+. +-+..+++.|.+.|.+|.+||+....+. +. ..++.
T Consensus 17 ~~~~~I~iIG~G----------~mG~~la~~L~~~G~~V~~~~r~~~~~~----~~-------------------~~g~~ 63 (201)
T 2yjz_A 17 EKQGVVCIFGTG----------DFGKSLGLKMLQCGYSVVFGSRNPQVSS----LL-------------------PRGAE 63 (201)
Confidence 345689999963 4677788899999999999998643111 10 01233
Q ss_pred EecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 402 VASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
.. ++.++++++|+|+++++...++++- .+.. +.+..+|||..+-++
T Consensus 64 ~~-~~~~~~~~aDvVilav~~~~~~~v~--~l~~-~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 64 VL-CYSEAASRSDVIVLAVHREHYDFLA--ELAD-SLKGRVLIDVSNNQK 109 (201)
Confidence 33 6778889999999999987766542 3333 223458999988774
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.13 Score=50.75 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHH---cCCCCeEEEEe-C-CHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIAL---KCPSIEVAVVD-I-SVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~---~~~G~~V~~~D-~-~~~~v~~l~ 43 (480)
+||+|+|.|++|..+...|.. + +..+|.++. + +++....+-
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~-~~~eivai~~~~~~~~~~~ll 48 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLL 48 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGG-GTEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCC-CCEEEEEEeCCCCHHHHHHHh
Confidence 699999999999999999887 4 467877654 3 455555544
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.075 Score=52.29 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=26.2
Q ss_pred ceEEEECCChhHHHHHHHHHHc-----CCCCeEEE-EeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALK-----CPSIEVAV-VDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-----~~G~~V~~-~D~~~ 36 (480)
+||+|||+|.||..++..|.++ +++.+|++ .|+++
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~ 45 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRS 45 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSB
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecCh
Confidence 4799999999999999999763 13556665 46654
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.12 Score=50.93 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcC-CCCeEEEE-eC-CHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVV-DI-SVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~-D~-~~~~v~~l~ 43 (480)
+||||+|.|++|.-+...|..+. |.++|..+ |+ +.+....+-
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll 45 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLL 45 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhc
Confidence 48999999999999999888752 46888765 43 455554443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.21 Score=47.95 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=61.4
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+..+.++++++|.|+|.+ +.-...++..|.+.|+.|.+.+-.
T Consensus 152 ~~~~i~l~Gk~vvVvGrs---------~iVG~p~A~lL~~~gAtVtv~h~~----------------------------- 193 (285)
T 3p2o_A 152 KAYEIDLEGKDAVIIGAS---------NIVGRPMATMLLNAGATVSVCHIK----------------------------- 193 (285)
T ss_dssp HHTTCCCTTCEEEEECCC---------TTTHHHHHHHHHHTTCEEEEECTT-----------------------------
T ss_pred HHhCCCCCCCEEEEECCC---------chHHHHHHHHHHHCCCeEEEEeCC-----------------------------
Confidence 334457899999999952 135889999999999999997532
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
..++.+.++.||.||.+|..+.|-.- +.+++..+|||.-
T Consensus 194 -------t~~L~~~~~~ADIVI~Avg~p~~I~~------~~vk~GavVIDVg 232 (285)
T 3p2o_A 194 -------TKDLSLYTRQADLIIVAAGCVNLLRS------DMVKEGVIVVDVG 232 (285)
T ss_dssp -------CSCHHHHHTTCSEEEECSSCTTCBCG------GGSCTTEEEEECC
T ss_pred -------chhHHHHhhcCCEEEECCCCCCcCCH------HHcCCCeEEEEec
Confidence 13567889999999999999987432 2345667899974
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.28 Score=50.81 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhC-CC-eEEEECCCCC----hhHHHhhhhcccCCCCCCCC-CCCCCCC-
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGD-KA-RLSIYDPQVP----QEHIQRDLQMNKFDWDHPIH-LQPTSPS- 395 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~-g~-~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 395 (480)
-.||+|+|+.| -.+.++..|.+. |. +|.+||..-. .-+ .+.. + ..|++ ..+....
T Consensus 18 ~mkIaVIGlG~----------mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~---~l~~-g---~~~i~~~e~gl~~l 80 (478)
T 3g79_A 18 IKKIGVLGMGY----------VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIE---MLNR-G---ESPLKGEEPGLEEL 80 (478)
T ss_dssp CCEEEEECCST----------THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHH---HHTT-T---CCCSSCCGGGHHHH
T ss_pred CCEEEEECcCH----------HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHH---HHHh-c---CCCccccCCCHHHH
Confidence 46999999987 899999999999 99 9999998755 321 1110 0 00100 0000000
Q ss_pred -----CcCceEEecChhhhcccCcEEEEeecCccccc----cc-------HHHHHhhcCCCCEEEEcCCCCC
Q 011650 396 -----TINQVIVASDAYEATKDSHGVCILTEWDEFKN----LD-------YQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 396 -----~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~----~~-------~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
....+.+.++ .+++++||++|++++-+.-.+ .| .+.+...+++..+|||...+..
T Consensus 81 ~~~~~~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p 151 (478)
T 3g79_A 81 IGKVVKAGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP 151 (478)
T ss_dssp HHHHHHTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred HHhhcccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence 0234666666 789999999999987663111 22 2456677777789999876654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.14 Score=49.42 Aligned_cols=120 Identities=11% Similarity=0.106 Sum_probs=69.3
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHh-----hhh---cccCCCCC-CCCCCCCCCC
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQR-----DLQ---MNKFDWDH-PIHLQPTSPS 395 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-----~~~---~~~~~~~~-~~~~~~~~~~ 395 (480)
++|+|+|+.. ....++..|.+.|++|.+||+.-...+... .+. ..+.-... |.+. ....
T Consensus 16 ~~I~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~--~~~~ 83 (302)
T 1f0y_A 16 KHVTVIGGGL----------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDE--FVEK 83 (302)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHH--HHHH
T ss_pred CEEEEECCCH----------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchh--hHHH
Confidence 5899999754 788999999999999999998633211100 000 00000000 0000 0000
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcc-cccccHHHHHhhcCCCCEEEEcCCCCChHHHh
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDE-FKNLDYQKIYNNMQKPAFVFDGRNILDVEKLR 456 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~ 456 (480)
....++..+++.++++++|.||+++.-+. .+.--++++...+++..+|+....-++...+.
T Consensus 84 ~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~ 145 (302)
T 1f0y_A 84 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 145 (302)
T ss_dssp HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred HHhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHH
Confidence 01246777888889999999999996542 12112334555555555777776666665553
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.27 Score=48.60 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=32.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRI 39 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
|+|.|.| .|.+|..++..|+++ |++|++++++++..
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~ 42 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGL 42 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCChh
Confidence 5799999 599999999999998 99999999987654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.15 Score=51.65 Aligned_cols=132 Identities=12% Similarity=0.013 Sum_probs=76.4
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCC-CCCCCCC--CCCCc-
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDH-PIHLQPT--SPSTI- 397 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~- 397 (480)
+.+.+|+|+|.. .-.+..++.|...|++|.+||+.....+....++.. +-. +....+. ..+.+
T Consensus 188 v~~~kV~ViG~G----------~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~---~~~~~~~~~~d~~~~~~ya 254 (405)
T 4dio_A 188 VPAAKIFVMGAG----------VAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAK---FIAVEDEEFKAAETAGGYA 254 (405)
T ss_dssp ECCCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCE---ECCCCC-------------
T ss_pred cCCCEEEEECCc----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCc---eeecccccccccccccchh
Confidence 467899999963 478899999999999999999987654333333310 000 0000000 00000
Q ss_pred CceE------EecChhhhcccCcEEEEeecCcccc--cccHHHHHhhcCCCCEEEEcC----CCCCh----HHHhhcCcE
Q 011650 398 NQVI------VASDAYEATKDSHGVCILTEWDEFK--NLDYQKIYNNMQKPAFVFDGR----NILDV----EKLRKIGFI 461 (480)
Q Consensus 398 ~~~~------~~~~~~~a~~~~d~~vi~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~----~~~~~----~~~~~~g~~ 461 (480)
..++ -..++.++++++|+||-.+-.|.=+ .+=.++..+.|++..+|||.- +.++- +.....|+.
T Consensus 255 ~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~ 334 (405)
T 4dio_A 255 KEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVR 334 (405)
T ss_dssp ----CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEE
T ss_pred hhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEE
Confidence 0000 0136788999999998764333211 122356778899888999986 34432 112235777
Q ss_pred EEEec
Q 011650 462 VYSIG 466 (480)
Q Consensus 462 y~~iG 466 (480)
++|+-
T Consensus 335 ~~gv~ 339 (405)
T 4dio_A 335 IVGHL 339 (405)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 76664
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.29 Score=50.83 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-...+++.|...|++|.++|+..........++ .
T Consensus 271 ~l~GktV~IiG~G----------~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G----------------------a 318 (494)
T 3ce6_A 271 LIGGKKVLICGYG----------DVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG----------------------F 318 (494)
T ss_dssp CCTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----------------------C
T ss_pred CCCcCEEEEEccC----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----------------------C
Confidence 5689999999963 3678899999999999999999654422222222 2
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC---CChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI---LDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~ 456 (480)
.+ .+++++++++|+|+.+|.-+.. ++ .+..+.|++.++|++.-.. ++...+.
T Consensus 319 ~~-~~l~e~l~~aDvVi~atgt~~~--i~-~~~l~~mk~ggilvnvG~~~~eId~~aL~ 373 (494)
T 3ce6_A 319 DV-VTVEEAIGDADIVVTATGNKDI--IM-LEHIKAMKDHAILGNIGHFDNEIDMAGLE 373 (494)
T ss_dssp EE-CCHHHHGGGCSEEEECSSSSCS--BC-HHHHHHSCTTCEEEECSSSGGGBCHHHHH
T ss_pred EE-ecHHHHHhCCCEEEECCCCHHH--HH-HHHHHhcCCCcEEEEeCCCCCccCHHHHH
Confidence 32 3677889999999999876653 33 3456778887889887652 4554443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.11 Score=49.37 Aligned_cols=108 Identities=10% Similarity=0.022 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCCh-hHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
.++++ +|+|+|.. ..+..+++.|.+.|++|.++|+.... +.+...++
T Consensus 113 ~~l~~-~v~iiG~G----------~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~--------------------- 160 (263)
T 2d5c_A 113 IPLKG-PALVLGAG----------GAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG--------------------- 160 (263)
T ss_dssp CCCCS-CEEEECCS----------HHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT---------------------
T ss_pred CCCCC-eEEEECCc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------------------
Confidence 35788 99999963 37788999999999999999986433 22222221
Q ss_pred ceEEecChhhhcccCcEEEEeecCcccccccHHHH-HhhcCCCCEEEEcCCCCCh----HHHhhcCcEEE
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKI-YNNMQKPAFVFDGRNILDV----EKLRKIGFIVY 463 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~~~~~~----~~~~~~g~~y~ 463 (480)
.. .+++.++ +++|+||++|+...+.+.+ ..+ .+.+++..+|+|.-..... +.+++.|.++.
T Consensus 161 -~~-~~~~~~~-~~~Divi~~tp~~~~~~~~-~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 161 -LR-AVPLEKA-REARLLVNATRVGLEDPSA-SPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQ 226 (263)
T ss_dssp -CE-ECCGGGG-GGCSEEEECSSTTTTCTTC-CSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCEEE
T ss_pred -cc-hhhHhhc-cCCCEEEEccCCCCCCCCC-CCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCEEE
Confidence 12 3467777 8999999999987543211 001 2445556689997653221 23345677653
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.027 Score=56.65 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=24.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
+||+||| .||+|.-+...|.++ |..++..+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h-p~~el~~l 50 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH-PEFEIHAL 50 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEE
T ss_pred cEEEEECCCChHHHHHHHHHHcC-CCceEEEe
Confidence 5799999 699999999988875 56677544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.31 Score=46.69 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCC
Q 011650 308 TRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPI 387 (480)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~ 387 (480)
.-+++ +.+..+.++++++|.|+|.+ +.-...++..|.+.|+.|.+.+-.
T Consensus 146 ~gv~~-lL~~~~i~l~Gk~vvVIG~s---------~iVG~p~A~lL~~~gAtVtv~hs~--------------------- 194 (285)
T 3l07_A 146 KGIMT-MLREYGIKTEGAYAVVVGAS---------NVVGKPVSQLLLNAKATVTTCHRF--------------------- 194 (285)
T ss_dssp HHHHH-HHHHTTCCCTTCEEEEECCC---------TTTHHHHHHHHHHTTCEEEEECTT---------------------
T ss_pred HHHHH-HHHHhCCCCCCCEEEEECCC---------chhHHHHHHHHHHCCCeEEEEeCC---------------------
Confidence 33433 33444567899999999952 135889999999999999986421
Q ss_pred CCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 388 HLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
..++.+.++.||.||.+|..+.|- +. +.+++..+|||.-
T Consensus 195 ---------------t~~L~~~~~~ADIVI~Avg~p~~I--~~----~~vk~GavVIDvg 233 (285)
T 3l07_A 195 ---------------TTDLKSHTTKADILIVAVGKPNFI--TA----DMVKEGAVVIDVG 233 (285)
T ss_dssp ---------------CSSHHHHHTTCSEEEECCCCTTCB--CG----GGSCTTCEEEECC
T ss_pred ---------------chhHHHhcccCCEEEECCCCCCCC--CH----HHcCCCcEEEEec
Confidence 135678899999999999999874 32 2345667999985
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.046 Score=52.42 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|+|.|||+|.+|..-+..|.+. |++|++++.+.
T Consensus 14 k~VLVVGgG~va~rka~~Ll~~--Ga~VtViap~~ 46 (274)
T 1kyq_A 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPDL 46 (274)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCC
Confidence 5799999999999999999998 99999998754
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.5 Score=45.79 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=30.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+|.|.| +|++|..++..|+++ |++|+++.++++
T Consensus 10 ~~vlVTGatGfIG~~l~~~Ll~~--G~~V~~~~r~~~ 44 (338)
T 2rh8_A 10 KTACVVGGTGFVASLLVKLLLQK--GYAVNTTVRDPD 44 (338)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHT--TCEEEEEESCTT
T ss_pred CEEEEECCchHHHHHHHHHHHHC--CCEEEEEEcCcc
Confidence 6799998 799999999999998 999999888754
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.024 Score=56.25 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=24.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEe
Q 011650 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D 33 (480)
|||+||| .||+|.-+...|..+ +|..++..+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~ 35 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA 35 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence 6999999 799999999998876 1333455554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.71 Score=41.26 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=69.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHH---hh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKH---VR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~~ 77 (480)
.+|.-||+|. |. ++..+++.+++.+|+++|++++.++..++.. +.....++++ ..|..+. ..
T Consensus 42 ~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 42 LVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNPQYLGFIRDNL------------KKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp CEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCHHHHHHHHHHH------------HHHTCTTEEEEECCTTTTCTTSC
T ss_pred CEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeCChhhhhhcCC
Confidence 3688999996 54 4555666644589999999999988776420 0000023332 2333221 24
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
..|+|+..-+.. + ....++.+...++++..++.. +....+.+.+.+.+++.+
T Consensus 108 ~~D~i~~~~~~~------------~---~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~l~~~g 159 (204)
T 3e05_A 108 DPDRVFIGGSGG------------M---LEEIIDAVDRRLKSEGVIVLN-AVTLDTLTKAVEFLEDHG 159 (204)
T ss_dssp CCSEEEESCCTT------------C---HHHHHHHHHHHCCTTCEEEEE-ECBHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCc------------C---HHHHHHHHHHhcCCCeEEEEE-ecccccHHHHHHHHHHCC
Confidence 689988764321 1 356788888899987776553 233345556666676653
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.031 Score=56.04 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=40.1
Q ss_pred CceEEEEC-CChhHHHHHH-HHHHcCCCC---eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIG-AGYVGGPTMA-VIALKCPSI---EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~-~La~~~~G~---~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
||||+|+| .|++|.-+.. .|.++ ++ ++..+..+. .|. ++. .+. . ..-.+.-..++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~--~~~~v~i~~~~~~s-------~G~-~v~--~~~----g-~~i~~~~~~~~~~- 62 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER--DFDAIRPVFFSTSQ-------LGQ-AAP--SFG----G-TTGTLQDAFDLEA- 62 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--GGGGSEEEEEESSS-------TTS-BCC--GGG----T-CCCBCEETTCHHH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC--CCCeEEEEEEEeCC-------CCC-Ccc--ccC----C-CceEEEecCChHH-
Confidence 78999999 9999999999 55543 33 445544321 111 110 000 0 0011222234555
Q ss_pred hhcCCEEEEEccC
Q 011650 76 VREANIVFVSVNT 88 (480)
Q Consensus 76 ~~~aDvVii~Vpt 88 (480)
+.++|+||.|+|.
T Consensus 63 ~~~~DvVf~a~g~ 75 (367)
T 1t4b_A 63 LKALDIIVTCQGG 75 (367)
T ss_dssp HHTCSEEEECSCH
T ss_pred hcCCCEEEECCCc
Confidence 6899999999873
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 480 | ||||
| d1mv8a3 | 136 | c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, | 5e-22 | |
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 5e-21 | |
| d1dlja1 | 98 | a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (U | 7e-19 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 1e-18 | |
| d1dlja2 | 196 | c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD | 5e-18 | |
| d1mv8a1 | 98 | a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, | 2e-14 | |
| d1dlja3 | 108 | c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD | 1e-07 |
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 89.4 bits (221), Expect = 5e-22
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 16/149 (10%)
Query: 315 VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQR 374
+ + +K+ +LG +FK T D RE+P +++ + L+G L I+D V +
Sbjct: 4 AFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHG 63
Query: 375 DLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIY 434
+ + ++ SD E S + + + F +L
Sbjct: 64 ANKEYIESKIPHVS-----------SLLVSDLDEVVASSDVLVLGNGDELFVDLV----- 107
Query: 435 NNMQKPAFVFDGRNILDVEKLRKIGFIVY 463
N + D + + I +
Sbjct: 108 NKTPSGKKLVDLVGFMPHTTTAQAEGICW 136
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 88.9 bits (219), Expect = 5e-21
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLE-EVVKQC 61
+I G GYVG ++ + EV VD+S +I+ N + PI EPGLE + +
Sbjct: 2 RISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 62 RGKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDK 121
+ L +TD +K V ++++ F+ V + T I + S+
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHT 118
Query: 122 IVVEKSTVPVKTAEAIEKILMHNSR---GINFQILSNPEFLAEGTAINDLFKPDRVLIGG 178
+VV + +P + ++ S G++F + +NPEFL E TAI D P +IG
Sbjct: 119 VVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE 178
Query: 179 RETPEGMKAIKALKDVY 195
+ + L+++Y
Sbjct: 179 LDK----QTGDLLEEIY 191
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 79.3 bits (195), Expect = 7e-19
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 210 WSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFG 269
AE KL AN +LA R++ N + E+ + + I +D RIG + N S G+G
Sbjct: 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYG 61
Query: 270 GSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTR 309
G KD L+ N +P + ++ N+ +K+
Sbjct: 62 GYSLPKDTKQLLA--NYNNIP--QTLIEAIVSSNNVRKSY 97
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 81.5 bits (200), Expect = 1e-18
Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 24/203 (11%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
+G G G A +ALK V DI RI I E
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAII----AEGPGLAGT 56
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
++D+ V++A+++ + V + S A IA ++
Sbjct: 57 AHPDLLTSDIGLAVKDADVILIVVPAI---------------HHASIAANIASYISEGQL 101
Query: 123 VVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE---GTAINDLFKPDRVLIGGR 179
++ E + + + + + S+ F + +
Sbjct: 102 IILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACL 161
Query: 180 ETPEGMKAIKALKDVYAHWVPED 202
+ A++ + V +V +
Sbjct: 162 PAAKAGWALEQIGSVLPQYVAVE 184
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 80.0 bits (196), Expect = 5e-18
Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 17/204 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCR 62
KI G+GYVG +++L+ EV +VDI +++ N+ PI + +E +K +
Sbjct: 2 KIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ 58
Query: 63 GKNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKI 122
+ A V T T D + E+ + + V S
Sbjct: 59 LSIKAT-----LDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHAT 112
Query: 123 VVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRE-- 180
++ KST+P+ + + +I+ +PEFL E A+ D P R+++ E
Sbjct: 113 LIIKSTIPIGFITEMRQKFQ------TDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166
Query: 181 TPEGMKAIKALKDVYAHWVPEDRI 204
+P+ + + ++ +
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNV 190
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Score = 66.7 bits (162), Expect = 2e-14
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 211 SAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGP--KFLNASVGF 268
AE+ K N + A +++ N + + +A G D +V I D ++ ++ F
Sbjct: 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAF 62
Query: 269 GGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQ 306
GGSC KD+ L Y + +++ N Q
Sbjct: 63 GGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQ 98
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Score = 47.6 bits (113), Expect = 1e-07
Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 26/124 (20%)
Query: 312 NRVVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE 370
++++ + S K + + K ++ + RE+ DV L ++ IY+P + +
Sbjct: 2 KQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL 61
Query: 371 HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDY 430
+Q ++ +D K ++ + +E +++
Sbjct: 62 ES------------------------EDQSVLVNDLENFKKQANIIVTNRYDNELQDVKN 97
Query: 431 QKIY 434
K+Y
Sbjct: 98 -KVY 100
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 480 | |||
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 100.0 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.95 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 99.92 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 99.91 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 99.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.86 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.82 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 99.79 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.78 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.76 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.73 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.67 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.64 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.63 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.59 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.59 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.57 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.52 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.5 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.5 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.4 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.4 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.36 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.1 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.08 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.87 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.78 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.7 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.68 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.67 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.66 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.66 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.64 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.6 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.59 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.58 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.48 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.45 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.43 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.38 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.37 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.36 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.35 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.32 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.31 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.3 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.24 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.21 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.2 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.18 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.17 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.17 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.16 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.14 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.13 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.1 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.07 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.06 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.04 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.01 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.98 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.96 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.93 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.92 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.91 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.89 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.86 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.84 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.8 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.76 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.76 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.74 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.74 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.69 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.64 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.63 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.55 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.54 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.51 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.5 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.47 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.47 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.46 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.39 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.38 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.34 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.33 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.3 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.3 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.3 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.28 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.27 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.23 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.19 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.16 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.11 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.1 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.08 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.03 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.02 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.96 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.87 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.85 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.84 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.8 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.76 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.75 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.69 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.58 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.54 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.52 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.48 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.46 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.42 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.41 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.4 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.39 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.38 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.3 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.3 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.2 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.19 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.18 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.1 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.1 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.03 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.01 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.97 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.91 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.9 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.87 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.84 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.83 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.73 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.7 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.68 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.67 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.65 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.65 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.63 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.62 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.57 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.55 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.55 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.52 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.5 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.49 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.46 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.45 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.39 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 95.38 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.38 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.38 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.37 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.37 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 95.35 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.34 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.32 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.26 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.22 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.03 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.03 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.03 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.03 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.02 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.01 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.0 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.0 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.99 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.98 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.96 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 94.89 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 94.87 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.85 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.82 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.76 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 94.75 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.75 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.68 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.66 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.62 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.57 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.49 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.48 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.47 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.46 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.44 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.43 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.42 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.41 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.39 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 94.38 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.37 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.35 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.32 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.29 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.26 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.17 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.16 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.15 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 94.14 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.12 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.09 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.07 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.06 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.05 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 93.79 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.73 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.66 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 93.6 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 93.57 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.55 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.48 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.46 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.36 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.26 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.1 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.05 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.0 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.9 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.85 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.76 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.75 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.7 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.62 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 92.62 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.62 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.62 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.61 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.6 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 92.6 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.56 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.56 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.56 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.43 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.42 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 92.24 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 92.01 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 91.95 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 91.94 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.78 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 91.75 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 91.71 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 91.7 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 91.61 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.57 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 91.55 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 91.54 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 91.47 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 91.3 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.19 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.1 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 91.09 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.99 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 90.94 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 90.92 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.92 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 90.9 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.81 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.74 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.66 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 90.66 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 90.62 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 90.62 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 90.6 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 90.59 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.55 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.54 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.5 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.46 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 90.34 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 90.32 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.3 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 90.29 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 90.27 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.22 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.14 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 90.14 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 90.11 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.95 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 89.73 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 89.7 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.67 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.64 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.6 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.56 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.53 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.52 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.44 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.3 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.29 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 89.08 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.05 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 89.03 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 88.99 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 88.9 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 88.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 88.85 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 88.6 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.53 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 88.52 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 88.15 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 88.08 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.06 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 87.9 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 87.9 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 87.85 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.81 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 87.76 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.72 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 87.62 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 87.59 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 87.51 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 87.42 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.41 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 87.23 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 87.11 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 87.11 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 87.07 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 86.96 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 86.76 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 86.67 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 86.66 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 86.59 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 86.57 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 86.39 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.36 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.26 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 86.24 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.17 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 86.03 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.94 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 85.72 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 85.47 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 85.43 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.41 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 85.32 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 85.23 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.03 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.91 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.87 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 84.74 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 84.73 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 84.67 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 84.66 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 84.52 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.46 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 84.42 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 84.39 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.23 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 83.96 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 83.96 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 83.89 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 83.82 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 83.49 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 83.34 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.28 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 83.24 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 83.15 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 82.98 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 82.86 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 82.56 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 82.45 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 82.42 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 82.4 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 82.37 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 82.31 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 82.28 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 81.7 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 81.62 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 81.32 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.18 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 81.17 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 81.07 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 80.7 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 80.69 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 80.29 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 80.23 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 80.05 |
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.2e-34 Score=263.87 Aligned_cols=187 Identities=33% Similarity=0.490 Sum_probs=167.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|++|+++|..||++ ||+|++||.|+++++.|++|..|+.|+++.+++.. ...+++.+++|.++++.+||
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d 78 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence 8999999999999999999999 99999999999999999999999999999988765 55678999999999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhC---CCCcEEEEecCCCcccHHHH-HHHHHhhcC---CCceEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVS---KSDKIVVEKSTVPVKTAEAI-EKILMHNSR---GINFQIL 153 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l---~~~~iVi~~STv~~gt~~~l-~~~l~~~~~---g~~~~v~ 153 (480)
++|+|||||...++ .+|.+++.++.+.+...+ .++++|+++||++|||++++ .+++++... +.+|.++
T Consensus 79 ~i~i~VpTP~~~~~-----~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~ 153 (202)
T d1mv8a2 79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG 153 (202)
T ss_dssp EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred EEEEecCccccccc-----cccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccch
Confidence 99999999987644 789999999888877654 47889999999999999985 455655432 6789999
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
|+|||+.+|+++.++.+++++|+|+. ++++.++++++|+.+.
T Consensus 154 ~~PE~~~~G~a~~d~~~~~~iViG~~----~~~~~~~~~~ly~~i~ 195 (202)
T d1mv8a2 154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELD 195 (202)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSS
T ss_pred hhhhhhcccchhhhhcCCCeEEEEeC----CHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987 5889999999999975
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.95 E-value=3.3e-28 Score=224.23 Aligned_cols=164 Identities=25% Similarity=0.363 Sum_probs=139.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+||+|+++|..|+ + ||+|+|||+|+++++.|++|..|++|++++++++.. ..+++.+++...+..++|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L--QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK-QLSIKATLDSKAAYKEAEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHHHCSE
T ss_pred CEEEEECCChhHHHHHHHHH-C--CCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh-hhhhhccchhhhhhhcccc
Confidence 89999999999999998886 5 899999999999999999999999999999887653 3567788888877899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
+++|||||.+.+ ....+++.+.++.+.+... .++.+|+.+||++||+++++.+.+. ++.++|+|||+.+
T Consensus 77 i~v~vpt~~~~~----~~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~~~~~~~------~~~~~~~PE~i~~ 145 (196)
T d1dlja2 77 VIIATPTNYNSR----INYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQ------TDRIIFSPEFLRE 145 (196)
T ss_dssp EEECCCCCEETT----TTEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHHTT------CSCEEECCCCCCT
T ss_pred ccccCCcccccc----CCCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeeeeeeccc------hhhhccchhhcch
Confidence 999999997642 2246788888888777665 5678899999999999998765543 3457899999999
Q ss_pred CccccccCCCCeEEEEccC
Q 011650 162 GTAINDLFKPDRVLIGGRE 180 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~ 180 (480)
|++++++.+|+++|+|+.+
T Consensus 146 G~ai~d~~~p~riv~G~~~ 164 (196)
T d1dlja2 146 SKALYDNLYPSRIIVSCEE 164 (196)
T ss_dssp TSTTHHHHSCSCEEEECCT
T ss_pred hhhHhhccCCCEEEEeCCH
Confidence 9999999999999988763
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=1.2e-25 Score=194.77 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=100.5
Q ss_pred HHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCC
Q 011650 312 NRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQP 391 (480)
Q Consensus 312 ~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (480)
+++.+.+ .+++++||+|||+||||||+|+|+||++.|++.|.++|++|.+|||+++.......... -. +
T Consensus 2 ~~~~~~i-~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~-~~-~-------- 70 (136)
T d1mv8a3 2 QKAFDLI-TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKE-YI-E-------- 70 (136)
T ss_dssp HHHHHHH-TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHH-HH-H--------
T ss_pred hHHHHHH-HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhh-hh-h--------
Confidence 3444444 45688999999999999999999999999999999999999999999875432110000 00 0
Q ss_pred CCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011650 392 TSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGK 467 (480)
Q Consensus 392 ~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~ 467 (480)
.........++++++++++++|++||+|+|++|+++ ...+.++.+|||+||+++.. .+.+|.||||
T Consensus 71 -~~~~~~~~~~~~~~~e~i~~~D~ivi~t~h~~f~~l-----~~~~~~~~~I~D~~~~~~~~----~~~~~~gi~w 136 (136)
T d1mv8a3 71 -SKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDL-----VNKTPSGKKLVDLVGFMPHT----TTAQAEGICW 136 (136)
T ss_dssp -HTSHHHHTTBCSCHHHHHHHCSEEEECSCCGGGHHH-----HHSCCTTCEEEESSSCCSSS----CCSSEEESCC
T ss_pred -hccccccceeehhhhhhhhhceEEEEEeCCHHHHHH-----HHHhcCCCEEEECCCCCChh----HhcccCcccC
Confidence 000011234678999999999999999999999864 33444455999999999864 4667999996
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=6.3e-25 Score=177.98 Aligned_cols=96 Identities=24% Similarity=0.415 Sum_probs=90.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCC--CccccCCCCccccchhhhHHHHHHHHHH
Q 011650 209 LWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIG--PKFLNASVGFGGSCFQKDILNLVYICEC 286 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~--~~~~~pg~g~gG~c~~kD~~~l~~~a~~ 286 (480)
+++||++|++.|+|++++|+|+||++.+|+++|+|..+|.++++.++|++ ..++.||+||||+|||||+.+|.+.+++
T Consensus 1 ie~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~pG~G~GG~ClpKD~~al~~~a~~ 80 (98)
T d1mv8a1 1 VEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQ 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCCcccCCccccchhHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999986 4577899999999999999999999999
Q ss_pred CCCchhhhHHHHHHHHhhHh
Q 011650 287 NGLPEVANYWKQVIKVNDYQ 306 (480)
Q Consensus 287 ~g~~~~~~~~~~~~~~N~~~ 306 (480)
.|++ .+++++++++|+.|
T Consensus 81 ~~~~--~~ll~~~~~~N~~q 98 (98)
T d1mv8a1 81 LDVE--HPMLGSLMRSNSNQ 98 (98)
T ss_dssp TTCC--CTTGGGHHHHHHHH
T ss_pred cCCC--hHHHHHHHHHHhCC
Confidence 9998 78999999999975
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.90 E-value=7.9e-24 Score=171.70 Aligned_cols=97 Identities=29% Similarity=0.500 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccCCCCccccchhhhHHHHHHHHHHCCC
Q 011650 210 WSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289 (480)
Q Consensus 210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~~~~pg~g~gG~c~~kD~~~l~~~a~~~g~ 289 (480)
.+||++|++.|+|++++|+|+||++.+|+++|+|..+|+++++.++|++.+++.||+||||+|||||+.+|+. ...|+
T Consensus 2 ~eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~~~~pg~g~GG~ClpKD~~al~~--~~~~~ 79 (98)
T d1dlja1 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLA--NYNNI 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHH--HHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCccccCCCCcccccCcccHHHHHH--HhcCC
Confidence 4799999999999999999999999999999999999999999999999889999999999999999999964 55677
Q ss_pred chhhhHHHHHHHHhhHhHHHH
Q 011650 290 PEVANYWKQVIKVNDYQKTRF 310 (480)
Q Consensus 290 ~~~~~~~~~~~~~N~~~~~~~ 310 (480)
+ .+++++++++|+.|++++
T Consensus 80 ~--~~ll~~~~~~N~~~~~~i 98 (98)
T d1dlja1 80 P--QTLIEAIVSSNNVRKSYI 98 (98)
T ss_dssp S--CSHHHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHhhhhhC
Confidence 6 679999999999998875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=9.4e-22 Score=174.91 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=124.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||||||+|.||.+||.+|+++ ||+|++||+++++++.+.+. .....+++++++++||+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d~ 59 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV 59 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred CEEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHh-------------------hhhhcccHHHHHhCCCe
Confidence 8999999999999999999998 99999999999999988753 34567889999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
||+|||++ ..+++++ +.+.+.++++++|+++||+.|.+++++.+.+.+.+ +.++.+|..
T Consensus 60 ii~~v~~~--------------~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapv~ 121 (161)
T d1vpda2 60 IITMLPNS--------------PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG----VEMLDAPVS 121 (161)
T ss_dssp EEECCSSH--------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred EEEEcCCH--------------HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC----Cceeccccc
Confidence 99999865 2345555 56888899999999999999999999988887653 355678876
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
..+..+..... .+++||+ ++.+++++++|+.++.
T Consensus 122 gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 122 GGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG 155 (161)
T ss_dssp SHHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHTTEE
T ss_pred CChhHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC
Confidence 65544433221 4788985 7899999999998863
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.82 E-value=1.6e-20 Score=167.06 Aligned_cols=153 Identities=16% Similarity=0.224 Sum_probs=120.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ......++.+++..+|
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d 59 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD 59 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTSCS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECchhhhhhhhhh-------------------hccccchhhhhccccC
Confidence 89999999999999999999998 99999999999999887752 2445678888899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH---HHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPE 157 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (480)
+|++|||.+ ..+++++ ..+.+.+.++++|+++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 60 iii~~v~~~--------------~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~g----i~~~dapv 121 (162)
T d3cuma2 60 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV 121 (162)
T ss_dssp EEEECCSCH--------------HHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred eeeecccch--------------hhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCC----CcEEeccc
Confidence 999999853 2234444 34778899999999999999999999998888764 23345665
Q ss_pred ccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 158 FLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
...|..+..... .+++||+ ++++++++++++.++.
T Consensus 122 ~Gg~~~a~~G~l---~~~~gG~-----~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 122 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMGR 156 (162)
T ss_dssp ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHEE
T ss_pred ccCccccccCCe---EEEecCC-----HHHHHHHHHHHHHHcC
Confidence 544433332211 4778885 7899999999998863
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.79 E-value=1e-19 Score=150.20 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=78.7
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
..++|+|||+||||||+|+|+||++.|++.|.+.|++|.+|||++...+. ..+..+
T Consensus 14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~------------------------~~~~~~ 69 (108)
T d1dlja3 14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES------------------------EDQSVL 69 (108)
T ss_dssp SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT------------------------TCCSEE
T ss_pred CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh------------------------ccCCEE
Confidence 34589999999999999999999999999999999999999999975422 123567
Q ss_pred ecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 403 ASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
..+++++++.+|++|+.+.|.+|.++. + . +.+|++|.+
T Consensus 70 ~~~l~~~~~~sDiII~~~~~~~~~~~~-----~----K---v~tr~if~~ 107 (108)
T d1dlja3 70 VNDLENFKKQANIIVTNRYDNELQDVK-----N----K---VYSRDIFGR 107 (108)
T ss_dssp CCCHHHHHHHCSEEECSSCCGGGGGGG-----G----G---EECCCCSSC
T ss_pred EeCHHHHHhhCCEEEEcCCchHHHhcC-----c----c---cCCCCCCCC
Confidence 789999999999999999999987642 1 1 358999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.78 E-value=2.9e-18 Score=152.45 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=118.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.++|..|.++ ||+|++||++++.++++++... .-...++. +++++||+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~-----------------~~~~~~~~-~~~~~~Di 60 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----------------VDEAGQDL-SLLQTAKI 60 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----------------CSEEESCG-GGGTTCSE
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc-----------------cceeeeec-cccccccc
Confidence 8999999999999999999998 9999999999999888765211 01344555 45899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+|||. +.++++++++.+.++++++|++.+++.....+.+.+..... ...+..++|+...+
T Consensus 61 Iilavp~---------------~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~---~~~h~~~~~~~~g~ 122 (165)
T d2f1ka2 61 IFLCTPI---------------QLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQGI 122 (165)
T ss_dssp EEECSCH---------------HHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSSG
T ss_pred ccccCcH---------------hhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhccc---ccceeeecccccch
Confidence 9999974 34688999999999999999988877655554443332211 11244567777777
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
..+..+++....+++.. ....+++..+.++++|+.++
T Consensus 123 ~~a~~~l~~~~~~il~~-~~~~~~~~~~~v~~l~~~lG 159 (165)
T d2f1ka2 123 DGAEENLFVNAPYVLTP-TEYTDPEQLACLRSVLEPLG 159 (165)
T ss_dssp GGCCTTTTTTCEEEEEE-CTTCCHHHHHHHHHHHGGGT
T ss_pred hhhcccccCCCeEEEEe-CCCCCHHHHHHHHHHHHHhC
Confidence 77777777666655532 22236889999999999986
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.76 E-value=1.2e-18 Score=158.41 Aligned_cols=167 Identities=18% Similarity=0.214 Sum_probs=127.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS-DQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||+|||+|.||+++|..|+++ ||+|++|+++++.++.+++ +.++.+.|+.. ...++++++|++++++++
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~------l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGA 78 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTC
T ss_pred eceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecHHHHHHHhhcccccccccccc------cccccccchhhhhccCCC
Confidence 45799999999999999999998 9999999999999999986 44555555532 246799999999999999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhh-----CCCCcEEEEec-CCCcccHHHHHHHHHhhcCCCceEEe
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADV-----SKSDKIVVEKS-TVPVKTAEAIEKILMHNSRGINFQIL 153 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-----l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (480)
|+||+|||+. .++++++++.++ +.++..|+..| .+.+++...+.+++.+..+...+.++
T Consensus 79 d~iiiavPs~---------------~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vl 143 (189)
T d1n1ea2 79 EIILFVIPTQ---------------FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVL 143 (189)
T ss_dssp SCEEECSCHH---------------HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEE
T ss_pred CEEEEcCcHH---------------HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEE
Confidence 9999999863 356677776543 34556666655 35677767777777765433457788
Q ss_pred eCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhcc
Q 011650 154 SNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHW 198 (480)
Q Consensus 154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~ 198 (480)
.+|.++.+-.. ..|+.+++++. +.+..+.++++|+..
T Consensus 144 sGP~~A~Ev~~----~~pt~~viAs~----~~~~a~~i~~lfst~ 180 (189)
T d1n1ea2 144 AGPSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTG 180 (189)
T ss_dssp ESSCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCT
T ss_pred ecCCcHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCC
Confidence 99988765321 35677888887 588999999999864
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.73 E-value=4.8e-18 Score=152.83 Aligned_cols=156 Identities=10% Similarity=0.149 Sum_probs=119.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe---cCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS---TDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~~ 78 (480)
.+|||||+|.||.+||.+|+++ ||+|++||+++++++.+.+..... ...... .++.+++..
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~ 66 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKG--------------TKVLGAHSLEEMVSKLKK 66 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTT--------------SSCEECSSHHHHHHHBCS
T ss_pred CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhcccc--------------ccccchhhhhhhhhhhcc
Confidence 4799999999999999999999 999999999999999987643211 111122 234455678
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
+|.+++|+|.+ ..+.++.+.+.+.++++++||++||+.|.+++++.+.+.+.+ +.++.+|..
T Consensus 67 ~~~ii~~~~~~--------------~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g----~~~ldapvs 128 (176)
T d2pgda2 67 PRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG----ILFVGSGVS 128 (176)
T ss_dssp SCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred cceEEEecCch--------------HHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcC----Cceeccccc
Confidence 99999999753 356788899999999999999999999999999888887764 344566665
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
..+..+... ..+++||+ ++++++++++|+.+..
T Consensus 129 Gg~~~A~~G----~~~~~gG~-----~~~~~~~~~il~~~~~ 161 (176)
T d2pgda2 129 GGEDGARYG----PSLMPGGN-----KEAWPHIKAIFQGIAA 161 (176)
T ss_dssp SHHHHHHHC----CEEEEEEC-----TTTHHHHHHHHHHHSC
T ss_pred cCcccccCC----cEEEcCCC-----HHHHHHHHHHHHHHhc
Confidence 554444322 14678986 6789999999999864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.67 E-value=5.3e-16 Score=139.36 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=119.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH---Hhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK---HVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (480)
|||||||+|.||.+||.+|+++ ||+|++||+++++.+.+.+....... ...+....+.+. .+..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAPF-----------AGNLKAFETMEAFAASLKK 68 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTSTT-----------GGGEEECSCHHHHHHHBCS
T ss_pred CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCcccc-----------ccchhhhhhhhHHHHhccc
Confidence 8999999999999999999999 99999999999999988652211100 012344444333 2457
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEF 158 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (480)
++.++++++.. ..+.+++..+...+.++++++++||+.+.+++++.+.+.+.. +.++.+|..
T Consensus 69 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~----~~~ldapv~ 130 (178)
T d1pgja2 69 PRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG----LRFLGMGIS 130 (178)
T ss_dssp SCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTT----CEEEEEEEE
T ss_pred ceEEEEeecCc--------------chhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcc----eeEeccccc
Confidence 88888888642 345677888999999999999999999999999888887653 445677766
Q ss_pred cccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 159 LAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
..+..+... ..+++||+ ++.+++++++|+.+..
T Consensus 131 g~~~~a~~g----~~~mvgG~-----~~~~~~v~pil~~~~~ 163 (178)
T d1pgja2 131 GGEEGARKG----PAFFPGGT-----LSVWEEIRPIVEAAAA 163 (178)
T ss_dssp SHHHHHHHC----CEEEEEEC-----HHHHHHHHHHHHHHSC
T ss_pred CCcchhcCC----cEEEeeCC-----HHHHHHHHHHHHHHhc
Confidence 554333322 14788986 8899999999999874
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.64 E-value=7.6e-15 Score=130.61 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=119.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH-HhhcC
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK-HVREA 79 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (480)
|+||+|||+|.||.++|..|.+++...+|++||++++..+.+++.... -..+++..+ ....+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----------------~~~~~~~~~~~~~~~ 63 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----------------DEGTTSIAKVEDFSP 63 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----------------SEEESCGGGGGGTCC
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----------------hhhhhhhhhhhcccc
Confidence 678999999999999999999882235899999999998887753210 123444433 23589
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|+||+|+|. ..+.++++++.++++++++|++.+++.....+.+.+.+.+...+ .+-.+++|..
T Consensus 64 dlIila~p~---------------~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~--~hPm~G~e~s 126 (171)
T d2g5ca2 64 DFVMLSSPV---------------RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKS 126 (171)
T ss_dssp SEEEECSCH---------------HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCC
T ss_pred ccccccCCc---------------hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcccccc--cccccccccc
Confidence 999999873 23577888999999999999998888777767666655443101 1223445655
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILC 206 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~ 206 (480)
.+..+..++++...+++. +....+++..+.++++|+.++ ..+..
T Consensus 127 G~~~a~~~Lf~g~~~il~-p~~~~~~~~~~~v~~~~~~lG--~~v~~ 170 (171)
T d2g5ca2 127 GVEYSLDNLYEGKKVILT-PTKKTDKKRLKLVKRVWEDVG--GVVEY 170 (171)
T ss_dssp SGGGCCSSTTTTCEEEEC-CCSSSCHHHHHHHHHHHHHTT--CEEEE
T ss_pred cHHHHHHHhhCCCeEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEe
Confidence 666666777776666553 334447889999999999985 35543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.63 E-value=5.1e-16 Score=139.89 Aligned_cols=164 Identities=15% Similarity=0.227 Sum_probs=117.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|||+|||+|.||.++|..|+++ ||+|++|.+ +++.++.+++++ .+.+...+ ...++.+++|.++++++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~ 71 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLGVKL-------NGVEIFWPEQLEKCLEN 71 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCC-------CSEEEECGGGHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEecccHHHHHHHhhhhhhhhhcchh-------ccccccccccHHHHHhc
Confidence 8999999999999999999999 999999987 677789998754 23222111 12346788999999999
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC-CcccH-HHHHHHHHhhcC--CCceEEee
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV-PVKTA-EAIEKILMHNSR--GINFQILS 154 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~-~~l~~~l~~~~~--g~~~~v~~ 154 (480)
+|+||+|||+. .++.+++++.+++++..+|+..... +.++. ..+.+.+++... ...+.++.
T Consensus 72 ad~Ii~avps~---------------~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vls 136 (180)
T d1txga2 72 AEVVLLGVSTD---------------GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAIT 136 (180)
T ss_dssp CSEEEECSCGG---------------GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEE
T ss_pred cchhhcccchh---------------hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEc
Confidence 99999999852 3688899999999877666543333 22221 123445554332 23567889
Q ss_pred CCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhc
Q 011650 155 NPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAH 197 (480)
Q Consensus 155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~ 197 (480)
+|.++.+-. ...|..+++++. +.+..+.++++|+.
T Consensus 137 GP~~A~Ei~----~~~pt~~vias~----~~~~a~~i~~~f~~ 171 (180)
T d1txga2 137 GPAIAREVA----KRMPTTVVFSSP----SESSANKMKEIFET 171 (180)
T ss_dssp SSCCHHHHH----TTCCEEEEEECS----CHHHHHHHHHHHCB
T ss_pred CCccHHHHH----cCCCcEEEEEcC----CHHHHHHHHHHHCC
Confidence 999877632 124667788876 57889999999986
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=1.8e-15 Score=132.97 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=111.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEE
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIV 82 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (480)
||||||+|.||.+||.+|.++ |+.| +|+++.++...+.+.. +. ..... +.+.++|++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~--g~~~-~~~~~~~~~~~~~~~~-----------------~~--~~~~~-~~~~~~~~~ 58 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR--FPTL-VWNRTFEKALRHQEEF-----------------GS--EAVPL-ERVAEARVI 58 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT--SCEE-EECSSTHHHHHHHHHH-----------------CC--EECCG-GGGGGCSEE
T ss_pred eEEEEeHHHHHHHHHHHHHhC--CCEE-EEeCCHHHHHHHHHHc-----------------CC--ccccc-ccccceeEE
Confidence 899999999999999999987 8866 5666666665554310 11 23333 347889999
Q ss_pred EEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccC
Q 011650 83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEG 162 (480)
Q Consensus 83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G 162 (480)
|+|+|.+ ..+......+.+.++++++++++||+.|.+++++.+.+++.+ +.++.+|....+-
T Consensus 59 i~~~~~~--------------~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~g----i~~ldapVsGg~~ 120 (156)
T d2cvza2 59 FTCLPTT--------------REVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG----VTYLDAPVSGGTS 120 (156)
T ss_dssp EECCSSH--------------HHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCEESHHH
T ss_pred Eecccch--------------hhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcC----CeEEeccccCchh
Confidence 9999853 346777888999999999999999999999999998888653 4567888776554
Q ss_pred ccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 163 TAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 163 ~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.+....+ .+++||+ +++++++++++. +.
T Consensus 121 ~A~~G~L---~~~vgG~-----~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 121 GAEAGTL---TVMLGGP-----EEAVERVRPFLA-YA 148 (156)
T ss_dssp HHHHTCE---EEEEESC-----HHHHHHHGGGCT-TE
T ss_pred hhccCCE---EEEEeCC-----HHHHHHHHHHHH-hc
Confidence 4443322 4788986 889999999884 54
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.59 E-value=3.8e-15 Score=133.73 Aligned_cols=173 Identities=19% Similarity=0.224 Sum_probs=111.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||+.+|..|+++ ||+|++||+++++++.+++.+ ...+.++... .......+++++++++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG-----TAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE-----EECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhh-----hhhhhhhhhhhHhHhcCCC
Confidence 6999999999999999999998 999999999999999998643 2222222211 1123456889999999999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcC-CCceEE----eeC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQI----LSN 155 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v----~~~ 155 (480)
+||+|||++. ++++++++.+++.++++|+..++...+ ...+...+.+... ...+.. .+.
T Consensus 75 ~iii~v~~~~---------------~~~~~~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (184)
T d1bg6a2 75 VILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGG-ALEFRKILRENGAPEVTIGETSSMLFT 138 (184)
T ss_dssp EEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTTCCCCEEEEESSCSEE
T ss_pred EEEEEEchhH---------------HHHHHHHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHHhcCCCceEEEecCCcce
Confidence 9999998642 477899999999999988865555433 4445555554432 111211 122
Q ss_pred CcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhcc
Q 011650 156 PEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHW 198 (480)
Q Consensus 156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~ 198 (480)
+....+|........ .++.++..+...+++..+.++++|..+
T Consensus 139 ~~~~~~~~v~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~~~~f 180 (184)
T d1bg6a2 139 CRSERPGQVTVNAIK-GAMDFACLPAAKAGWALEQIGSVLPQY 180 (184)
T ss_dssp EECSSTTEEEEEEEC-SCEEEEEESGGGHHHHHHHHTTTCTTE
T ss_pred eeEecCCeeEEEeec-CCEEEEEecCCCCHHHHHHHHHhCcCe
Confidence 234445543221111 233344443333455666666655443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.8e-15 Score=133.66 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=112.4
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCCh-HHHHHHhcCCCEEEe
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ----------LPIYEPGL-EEVVKQCRGKNLFFS 69 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~----------~~~~e~~l-~~~~~~~~~~~l~~t 69 (480)
|.||+|||+|.||..+|..++.+ ||+|++||++++.+++..+.. .....+.. ++... ...++++.+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~i~~~ 80 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVE-KTLSTIATS 80 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHH-HHHHTEEEE
T ss_pred eEEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHH-HHHhhcccc
Confidence 46899999999999999999998 999999999998776544310 00000000 01111 112568999
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcC--
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSR-- 146 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~-- 146 (480)
+|+.+++.+||+|+.|+|.. .+++ +++++++.+.+++++++... |+.++. +++..+....+
T Consensus 81 ~d~~~a~~~ad~ViEav~E~-----------l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~---~la~~~~~p~r~i 144 (192)
T d1f0ya2 81 TDAASVVHSTDLVVEAIVEN-----------LKVK--NELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQDRFA 144 (192)
T ss_dssp SCHHHHTTSCSEEEECCCSC-----------HHHH--HHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGGGEE
T ss_pred chhHhhhcccceehhhcccc-----------hhHH--HHHHHHHhhhcccCceeeccCcccccc---hhhhhccCHhHEE
Confidence 99999999999999999852 3344 88999999999999888533 344422 22222211111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011650 147 GINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN 208 (480)
Q Consensus 147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~ 208 (480)
|.+| |+|....+-- .| +.+..+ ++++.+.+.++++.+++ .++.+.|
T Consensus 145 g~Hf---fnP~~~~~lV---------EI-v~g~~T--~~~~i~~~~~~~~~lgk-~pV~v~D 190 (192)
T d1f0ya2 145 GLHF---FNPVPVMKLV---------EV-IKTPMT--SQKTFESLVDFSKALGK-HPVSCKD 190 (192)
T ss_dssp EEEE---CSSTTTCCEE---------EE-ECCTTC--CHHHHHHHHHHHHHTTC-EEEEECS
T ss_pred eecc---ccccCcccEE---------EE-cCCCCC--CHHHHHHHHHHHHHcCC-EEEEeec
Confidence 2222 3554433311 24 455444 69999999999999874 5666654
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.52 E-value=5.4e-15 Score=129.24 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=80.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||||||+|.||.++|.+|+++ ||+|+++|+++.....+... ...+..++++++++||+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~di 59 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERAR-------------------TVGVTETSEEDVYSCPV 59 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHH-------------------HHTCEECCHHHHHTSSE
T ss_pred CEEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCchhHHHHHhhh-------------------cccccccHHHHHhhcCe
Confidence 8999999999999999999998 99999999887666554431 01124467788999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMH 143 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~ 143 (480)
||+|||.+. ..+++..+.+.+ ++++++.||+.|.+.+++.+.+++
T Consensus 60 Ii~~v~~~~---------------~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~ 104 (152)
T d1i36a2 60 VISAVTPGV---------------ALGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK 104 (152)
T ss_dssp EEECSCGGG---------------HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS
T ss_pred EEEEecCch---------------HHHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc
Confidence 999998421 244555666554 578999999999999988877654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.50 E-value=4.2e-14 Score=127.74 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=109.0
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC----------CCCCCCCChHHHHHHhcCCCEEEec
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD----------QLPIYEPGLEEVVKQCRGKNLFFST 70 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g----------~~~~~e~~l~~~~~~~~~~~l~~t~ 70 (480)
|.||+|||+|.||..+|..++.+ |++|++||++++.+++..+. .....+...+.. ..++..++
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~-----~~~i~~~~ 76 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEV-----LNGIRPTL 76 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHH-----HHHEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhh-----hceeeccc
Confidence 57899999999999999999998 99999999999877654321 001111111111 13578888
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe-cCCCcccHHHHHHHHHhhcC--C
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK-STVPVKTAEAIEKILMHNSR--G 147 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~--g 147 (480)
+.++ +.+||+||.|+|.. .+++ ++.+++|.+++++++++... |+.++. ++...+....+ |
T Consensus 77 ~~~~-~~~adlViEav~E~-----------l~~K--~~lf~~l~~~~~~~~IiaSnTS~l~i~---~la~~~~~p~r~~g 139 (186)
T d1wdka3 77 SYGD-FGNVDLVVEAVVEN-----------PKVK--QAVLAEVENHVREDAILASNTSTISIS---LLAKALKRPENFVG 139 (186)
T ss_dssp SSTT-GGGCSEEEECCCSC-----------HHHH--HHHHHHHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEE
T ss_pred cccc-ccccceeeeeecch-----------HHHH--HHHHHHHHhhcCCCeeEEeccccccHH---HHHHhccCchheEe
Confidence 8765 89999999999863 3444 78999999999999988543 344432 22221111110 1
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTN 208 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~ 208 (480)
.+| |+|....+.- .|+ .+..+ ++++.+.+.++++.+++ .++.+.|
T Consensus 140 ~Hf---~nP~~~~~lV---------Eiv-~~~~T--~~~~~~~~~~~~~~lgk-~pv~v~d 184 (186)
T d1wdka3 140 MHF---FNPVHMMPLV---------EVI-RGEKS--SDLAVATTVAYAKKMGK-NPIVVND 184 (186)
T ss_dssp EEC---CSSTTTCCEE---------EEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEEEES
T ss_pred ecc---ccCcccCCeE---------EEC-CCCCC--CHHHHHHHHHHHHHcCC-EEEEEec
Confidence 111 3444333211 244 45444 68999999999999874 5666544
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=3.2e-15 Score=139.50 Aligned_cols=168 Identities=18% Similarity=0.123 Sum_probs=124.1
Q ss_pred EEEECCCh--hHHHHHH------HHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHh-cC----------
Q 011650 4 ICCIGAGY--VGGPTMA------VIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQC-RG---------- 63 (480)
Q Consensus 4 I~VIGlG~--~G~~lA~------~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~-~~---------- 63 (480)
++++|.|. ||..++. +|++. |+.|++.|.|+++ ++++++|..++++|++.+.+.+. ..
T Consensus 43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~--g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 43 SITYGAELLHLVPDVKEVIVSDPCFAEE--PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECGGGGSS--SEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeecHHhhhhchhhhhccchhhhhc--CCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 45666665 6666666 68888 9999999999877 48899999999999999887641 11
Q ss_pred ------CCEEEecCHHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 64 ------KNLFFSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 64 ------~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
.++++++|+.+++++||+||+|||.+. .+.+++++|.++++++++|++.||+++.++.++
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~--------------~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l 186 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGN--------------KQPDIIKKFADAIPEGAIVTHACTIPTTKFAKI 186 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCT--------------THHHHHHHHGGGSCTTCEEEECSSSCHHHHHHH
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHH--------------HHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHH
Confidence 236889999999999999999998652 247788999999999999999999999988887
Q ss_pred HHHHHhhcCCCceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCC
Q 011650 138 EKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVP 200 (480)
Q Consensus 138 ~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~ 200 (480)
.+.+.+.+ .+| +..+|-. .|+.. ....++.++. +++.++++.++|+.+++
T Consensus 187 ~e~l~~kg--i~v-i~~hp~a-~pe~~-----g~~li~~~~a----seE~iekv~elles~Gk 236 (242)
T d2b0ja2 187 FKDLGRED--LNI-TSYHPGC-VPEMK-----GQVYIAEGYA----SEEAVNKLYEIGKIARG 236 (242)
T ss_dssp HHHTTCTT--SEE-EECBCSS-CTTTC-----CCEEEEESSS----CHHHHHHHHHHHHHHHS
T ss_pred HHhcccCC--CEE-ECCCccC-cCccc-----cceEEecCCC----CHHHHHHHHHHHHHHCC
Confidence 76665432 333 3444432 23211 1112333332 58999999999999874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.40 E-value=6.2e-13 Score=115.94 Aligned_cols=145 Identities=12% Similarity=0.192 Sum_probs=95.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+++..|.++ |++|+++++++++.+++.+. .++.++.+.++++++||+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~--~~~i~v~~r~~~~~~~l~~~------------------~g~~~~~~~~~~~~~~dv 60 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQ------------------LALPYAMSHQDLIDQVDL 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHH------------------HTCCBCSSHHHHHHTCSE
T ss_pred CEEEEEeccHHHHHHHHHHHhC--CCeEEEEcChHHhHHhhccc------------------cceeeechhhhhhhccce
Confidence 8999999999999999999988 99999999999998887642 124556788898999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+||+ |.. +..+.+.++++++|+ |....-+.+.+.+.+.... .+. -..|....
T Consensus 61 Iilavk-p~~------------------~~~vl~~l~~~~~ii--s~~agi~~~~l~~~l~~~~---~iv-r~mPN~~~- 114 (152)
T d2ahra2 61 VILGIK-PQL------------------FETVLKPLHFKQPII--SMAAGISLQRLATFVGQDL---PLL-RIMPNMNA- 114 (152)
T ss_dssp EEECSC-GGG------------------HHHHHTTSCCCSCEE--ECCTTCCHHHHHHHHCTTS---CEE-EEECCGGG-
T ss_pred eeeecc-hHh------------------HHHHhhhcccceeEe--cccccccHHHHHhhhcccc---cch-hhccchhh-
Confidence 999996 321 234455677788776 3333334455665554321 221 12232110
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.. ..+...+.++. ..+++..++++++|+.++
T Consensus 115 --~v---~~g~~~~~~~~--~~~~~~~~~v~~l~~~~G 145 (152)
T d2ahra2 115 --QI---LQSSTALTGNA--LVSQELQARVRDLTDSFG 145 (152)
T ss_dssp --GG---TCEEEEEEECT--TCCHHHHHHHHHHHHTTE
T ss_pred --hc---CccceEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence 00 11112233332 225788999999999985
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.40 E-value=7.9e-13 Score=115.09 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=95.9
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||+||| +|.||.+||.+|.++ ||+|++||+++.. +.+..+.++
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~~--------------------------------~~~~~~~~~ 54 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWA--------------------------------VAESILANA 54 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGG--------------------------------GHHHHHTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc--CCCcEeccccccc--------------------------------ccchhhhhc
Confidence 57899999 999999999999998 9999999986432 113346889
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
|++++|+|.. .+..++.++.+.++++++|++.||+.+...+.+.+.+.. + ++..+|-+.
T Consensus 55 ~~v~~~~~~~---------------~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~-----~-~v~~hP~~G 113 (152)
T d2pv7a2 55 DVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTG-----A-VLGLHPMFG 113 (152)
T ss_dssp SEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCSS-----E-EEEEEECSC
T ss_pred cccccccchh---------------hheeeeecccccccCCceEEEecccCHHHHHHHHHHccC-----C-EEEecccCC
Confidence 9999998742 246788899999999999999999987776665443221 2 244455443
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
.+-... .....++..+. +++.++++.++|+.++
T Consensus 114 p~~~~~---~g~~~v~~~g~----~~~~~~~~~~ll~~~G 146 (152)
T d2pv7a2 114 ADIASM---AKQVVVRCDGR----FPERYEWLLEQIQIWG 146 (152)
T ss_dssp TTCSCC---TTCEEEEEEEE----CGGGTHHHHHHHHHTT
T ss_pred Cccccc---CCcEEEEecCC----CHHHHHHHHHHHHHhC
Confidence 321111 11112333222 2567899999999885
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.36 E-value=2.1e-12 Score=112.41 Aligned_cols=144 Identities=9% Similarity=0.174 Sum_probs=92.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||.+++..|.+++ +++|+++|+++++.+.+++. .++..+++.++ +.+||+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~------------------~~~~~~~~~~~-v~~~Di 60 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKE------------------LGVETSATLPE-LHSDDV 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCC-CCTTSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhh------------------ccccccccccc-ccccce
Confidence 89999999999999999998872 39999999999999988752 23566677665 788999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCce-E-EeeCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINF-Q-ILSNPEFL 159 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~-v~~~Pe~~ 159 (480)
||+||+ |. .+.++++++ ...+++|+ |+...-+.+.+++.+.... .+ . +...|...
T Consensus 61 v~lavk-P~--------------~~~~v~~~l---~~~~~~vi--S~~ag~~~~~l~~~l~~~~---~iir~mpn~p~~~ 117 (152)
T d1yqga2 61 LILAVK-PQ--------------DMEAACKNI---RTNGALVL--SVAAGLSVGTLSRYLGGTR---RIVRVMPNTPGKI 117 (152)
T ss_dssp EEECSC-HH--------------HHHHHHTTC---CCTTCEEE--ECCTTCCHHHHHHHTTSCC---CEEEEECCGGGGG
T ss_pred EEEecC-HH--------------HHHHhHHHH---hhcccEEe--ecccCCCHHHHHHHhCcCc---ceEeecccchhHh
Confidence 999997 31 234444433 23456665 4444444555665553221 11 1 11233333
Q ss_pred ccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 160 AEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
..|. ..+..+. ..+++..+.++++|+.++
T Consensus 118 ~~g~---------t~~~~~~--~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 118 GLGV---------SGMYAEA--EVSETDRRIADRIMKSVG 146 (152)
T ss_dssp TCEE---------EEEECCT--TSCHHHHHHHHHHHHTTE
T ss_pred cCCc---------EEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence 3221 1222222 225778899999999975
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=1.2e-11 Score=107.51 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=83.8
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCEEE
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANIVF 83 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (480)
|+|||+|.||.+||..|.++ ++.+.+|+|++++.+++.+.. ... ..+++++++.+|+||
T Consensus 2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R~~~~~~~l~~~~------------------~~~-~~~~~~~~~~~DiVi 60 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVY------------------GGK-AATLEKHPELNGVVF 60 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHT------------------CCC-CCSSCCCCC---CEE
T ss_pred EEEEeCcHHHHHHHHHHHhC--CCEEEEEeCChhhhcchhhcc------------------ccc-ccchhhhhccCcEEE
Confidence 79999999999999999765 555678999999999887621 111 234556688999999
Q ss_pred EEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccccCc
Q 011650 84 VSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGT 163 (480)
Q Consensus 84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~ 163 (480)
+|||.. .+.++++++ ..++++|+.+|+..+-. .++.... ..++...+|....+
T Consensus 61 l~v~d~---------------~i~~v~~~l---~~~~~ivi~~s~~~~~~------~l~~~~~-~~~~~~~~~~~~~~-- 113 (153)
T d2i76a2 61 VIVPDR---------------YIKTVANHL---NLGDAVLVHCSGFLSSE------IFKKSGR-ASIHPNFSFSSLEK-- 113 (153)
T ss_dssp ECSCTT---------------THHHHHTTT---CCSSCCEEECCSSSCGG------GGCSSSE-EEEEECSCC--CTT--
T ss_pred Eeccch---------------hhhHHHhhh---cccceeeeecccchhhh------hhhhhcc-ccceeeeecccccc--
Confidence 999832 133443332 24688888877653321 1122111 11233333332221
Q ss_pred cccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEE
Q 011650 164 AINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRIL 205 (480)
Q Consensus 164 a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~ 205 (480)
....+... .++++++ +++.+.++++++.++. .++.
T Consensus 114 ~~~~~~~~-~~~~~gd-----~~~~~~~~~l~~~lG~-~~~~ 148 (153)
T d2i76a2 114 ALEMKDQI-VFGLEGD-----ERGLPIVKKIAEEISG-KYFV 148 (153)
T ss_dssp GGGCGGGC-CEEECCC-----TTTHHHHHHHHHHHCS-CEEE
T ss_pred hhhhccCc-EEEEeCC-----HHHHHHHHHHHHHHCC-cEEE
Confidence 11111112 3566764 5688999999999873 3443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.3e-11 Score=105.68 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=95.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
|||+|||+|.||+.+|..|++. ||+|+++++++++.+.++....... ........+..+.+..+|+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~D~ 66 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVETDGS------------IFNESLTANDPDFLATSDL 66 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECTTSC------------EEEEEEEESCHHHHHTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhccccCCcc------------ccccccccchhhhhcccce
Confidence 8999999999999999999998 9999999999875554432110000 0011233333455899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCccccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAE 161 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (480)
||+||+++ .++++++.+.+++.++++|+.... ..+..+.+++ .....-..+.+......+
T Consensus 67 iii~vka~---------------~~~~~~~~l~~~~~~~~~Iv~~qN-G~~~~~~l~~----~~~~v~~g~~~~~~~~~~ 126 (167)
T d1ks9a2 67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEELQN----IQQPLLMGTTTHAARRDG 126 (167)
T ss_dssp EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGGGTT----CCSCEEEEEECCEEEEET
T ss_pred EEEeeccc---------------chHHHHHhhccccCcccEEeeccC-cccHHHHHhh----cCCcEEEEEeeEeEEecC
Confidence 99999853 247789999999998887765432 3344333322 110000112222223334
Q ss_pred CccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccC
Q 011650 162 GTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWV 199 (480)
Q Consensus 162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~ 199 (480)
+...+... . .+.+|..+. ..+..+.+.++|+...
T Consensus 127 ~~i~~~~~-g-~t~ig~~~~--~~~~~~~l~~~l~~a~ 160 (167)
T d1ks9a2 127 NVIIHVAN-G-ITHIGPARQ--QDGDYSYLADILQTVL 160 (167)
T ss_dssp TEEEEEEC-C-CEEEEESSG--GGTTCTHHHHHHHTTS
T ss_pred CEEEEeCC-c-CEEEeeCCC--cchhHHHHHHHHHhhC
Confidence 44333322 2 345665422 1234567778887644
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.87 E-value=2.1e-08 Score=85.78 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=74.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH--HhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK--QCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~--~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|++|.++|..|+.++...+|.++|+++++.+.... ++.. .........+.|+++ +++|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~-----------Dl~~a~~~~~~~~~~~~d~~~-~~~a 73 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDAL-----------DLEDAQAFTAPKKIYSGEYSD-CKDA 73 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHH-----------HHHGGGGGSCCCEEEECCGGG-GTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHH-----------HHhccccccCCceEeeccHHH-hccc
Confidence 6999999999999999999987323699999999987654331 1100 011234567788876 8999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
|+|+++...|..... + +.| .+.+++..+.|.++.+ +.++++ .|.|....
T Consensus 74 divvitag~~~~~g~---~-r~~l~~~N~~i~~~~~~~i~~~~p-~aiviv-vtNPvdv~ 127 (146)
T d1ez4a1 74 DLVVITAGAPQKPGE---S-RLDLVNKNLNILSSIVKPVVDSGF-DGIFLV-AANPVDIL 127 (146)
T ss_dssp SEEEECCCC--------------CHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHH
T ss_pred cEEEEecccccCCCC---C-HHHHHHHHHHHHHHHHHHHhhcCC-CcEEEE-eCCccHHH
Confidence 999999988765411 1 223 4456677777777655 455544 46777653
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.70 E-value=5e-08 Score=83.08 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=76.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-HhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-QCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..++.+....++.++|+++++.+..... +..... .....++..+++.+ ++++||
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d--------~~~~~~~~~~~~~i~~~~~~~-~~~dad 71 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD--------MYESGPVGLFDTKVTGSNDYA-DTANSD 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhh--------hhcccchhcccceEEecCCHH-HhcCCe
Confidence 89999999999999999999873336999999998776543210 000000 01223456667765 599999
Q ss_pred EEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|+++...|.... .+ +. +...+++..+.|.++.+ +.++++ -|.|..+.-.
T Consensus 72 vvvitag~~~~~g---~~-r~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvd~~~~ 126 (142)
T d1guza1 72 IVIITAGLPRKPG---MT-REDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIMTH 126 (142)
T ss_dssp EEEECCSCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHHHH
T ss_pred EEEEEEecCCCCC---Cc-hHHHHHHHHHHHHHHHHHhhccCC-CeEEEE-ecCChHHHHH
Confidence 9999987664431 01 11 22334566667777764 555544 5778776443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=2.2e-07 Score=78.78 Aligned_cols=116 Identities=21% Similarity=0.333 Sum_probs=75.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH--hcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ--CRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~--~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|||+|.+|.++|..++.+....++.++|+++++++.... ++... ........+.+++ ++++|
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~-----------Dl~~~~~~~~~~~~~~~~~~-~~~~a 68 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDAL-----------DLIHGTPFTRRANIYAGDYA-DLKGS 68 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHH-----------HHHHHGGGSCCCEEEECCGG-GGTTC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhc-----------cccccccccccccccCCcHH-HhcCC
Confidence 8999999999999999999887334689999999987664321 11110 1112223455655 59999
Q ss_pred CEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+|++|...|.... ..+.| ...+++..+.|.++.+ +.++++ -|.|....-
T Consensus 69 divvitag~~~~~g----~~r~dl~~~N~~I~~~i~~~i~~~~p-~aiviv-vtNPvd~~t 123 (140)
T d1a5za1 69 DVVIVAAGVPQKPG----ETRLQLLGRNARVMKEIARNVSKYAP-DSIVIV-VTNPVDVLT 123 (140)
T ss_dssp SEEEECCCCCCCSS----CCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEE-CSSSHHHHH
T ss_pred CEEEEecccccCCC----cchhhhhccccchHHHHHHHHHhcCC-CcEEEE-eCCcHHHHH
Confidence 99999987765431 11222 2335666677777765 455544 578877643
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.67 E-value=9.2e-08 Score=81.37 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=75.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|++|.++|..|+.+ + .++.++|+++++.+........ . ..+ .....+++.++|+++ ++++|
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~--~l~dl~l~D~~~~~~~~~~~Dl~~----~-~~~--~~~~~~i~~~~d~~~-~~~ad 71 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALDLYE----A-SPI--EGFDVRVTGTNNYAD-TANSD 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSSSSHHHHHHHHHHT----T-HHH--HTCCCCEEEESCGGG-GTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CcceEEEEeeccccchhHHHHhhc----c-ccc--cCCCCEEEecCcHHH-hcCCC
Confidence 5999999999999999999887 4 4899999998776543321000 0 000 011235677889886 89999
Q ss_pred EEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|++|...|..... + +.| .+.+++..+.|.++.++ .+++. .|.|..+.-.
T Consensus 72 vvvitag~~~~~~~---~-r~dl~~~N~~i~~~i~~~i~k~~p~-aiviv-vtNPvDv~t~ 126 (142)
T d1uxja1 72 VIVVTSGAPRKPGM---S-REDLIKVNADITRACISQAAPLSPN-AVIIM-VNNPLDAMTY 126 (142)
T ss_dssp EEEECCSCC-------------CHHHHHHHHHHHHHHHGGGCTT-CEEEE-CSSSHHHHHH
T ss_pred EEEEeeeccCCcCc---c-hhHHHhHHHHHHHHHHHHHhccCCC-ceEEE-eCCchHHHHH
Confidence 99999987764411 1 222 34556666777776554 44443 6788876433
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.66 E-value=1.6e-07 Score=80.49 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=76.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+|||+|.||.++|..++.+.-..++.++|+++++.+..... +..............+.+++ ++++||+
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~d~~-~l~daDv 77 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD--------FNHGKVFAPKPVDIWHGDYD-DCRDADL 77 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHTTSSSSCCEEEECCGG-GTTTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc--------HhhCccccCCCeEEEECCHH-Hhcccee
Confidence 38999999999999999999873234899999999886543320 00000000112223456665 4999999
Q ss_pred EEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
|+++...|.... ..+.| ...+++..+.|.++.+. .++++ -|.|....-.
T Consensus 78 vvitag~~~~~~----~~R~dl~~~N~~i~~~i~~~i~~~~p~-a~~iv-vtNPvd~~t~ 131 (148)
T d1ldna1 78 VVICAGANQKPG----ETRLDLVDKNIAIFRSIVESVMASGFQ-GLFLV-ATNPVDILTY 131 (148)
T ss_dssp EEECCSCCCCTT----TCSGGGHHHHHHHHHHHHHHHHHHTCC-SEEEE-CSSSHHHHHH
T ss_pred EEEecccccccC----cchhHHHHHHHHHHHHHHHHHHhhCCC-ceEEE-ecCccHHHHH
Confidence 999988776541 11233 34556677778887665 44443 4678776433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.66 E-value=1.6e-07 Score=80.11 Aligned_cols=122 Identities=15% Similarity=0.183 Sum_probs=75.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||+|||+|++|.++|..++.++...++.++|+++++.+..... +..............+.|+++ +++||+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~D--------l~~a~~~~~~~~~~~~~d~~~-l~~adi 72 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID--------FQDAMANLEAHGNIVINDWAA-LADADV 72 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSSSCCEEEESCGGG-GTTCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHh--------hhccccccCCccceeccCHHH-hccccE
Confidence 69999999999999999998872235899999999886543320 111100011122345677765 899999
Q ss_pred EEEEccCCCCcCC-CCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 82 VFVSVNTPTKTQG-LGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~-~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+++...|..... -+.+ +.| ...+++..+.|.++.+ +.++++ -|.|....-
T Consensus 73 VVitaG~~~~~~~~~g~~-R~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvD~~t 129 (146)
T d1hyha1 73 VISTLGNIKLQQDNPTGD-RFAELKFTSSMVQSVGTNLKESGF-HGVLVV-ISNPVDVIT 129 (146)
T ss_dssp EEECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHH
T ss_pred EEEeccccccccccCCcc-HHHHHHHHHHHHHHHHHHHhhcCC-CeEEEE-ecCcHHHHH
Confidence 9999876542210 0011 223 3446666677776654 555543 467877643
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.64 E-value=1.7e-07 Score=79.55 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=73.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (480)
|||+|||+|.+|.++|..++.++.-.++.++|+++++.+.... ++....... ...++..++|++ ++++||
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~al--------Dl~~~~~~~~~~~~i~~~~d~~-~~~~ad 71 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAM--------DLAHAAAGIDKYPKIVGGADYS-LLKGSE 71 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH--------HHHHHHHTTTCCCEEEEESCGG-GGTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHH--------HHhhhccccCCCCccccCCCHH-Hhcccc
Confidence 8999999999999999999977222589999999988654221 011000000 123466777876 499999
Q ss_pred EEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 81 IVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+|+++...|.... .+ +.| ...+++..+.+.++. ++.++++ -|.|....
T Consensus 72 iVvitag~~~~~g---~~-r~~l~~~n~~i~~~i~~~i~~~~-p~aiviv-vtNPvD~~ 124 (142)
T d1ojua1 72 IIVVTAGLARKPG---MT-RLDLAHKNAGIIKDIAKKIVENA-PESKILV-VTNPMDVM 124 (142)
T ss_dssp EEEECCCCCCCSS---CC-HHHHHHHHHHHHHHHHHHHHTTS-TTCEEEE-CSSSHHHH
T ss_pred EEEEeccccCCCC---Cc-hHHHHHHhhHHHHHHHHHHHhhC-CCcEEEE-ecCChHHH
Confidence 9999987765441 11 122 123344445555554 3555544 46776654
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.60 E-value=8.4e-08 Score=80.68 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=75.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCc-------cc--cCCCCccccchhhhHH
Q 011650 208 NLWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGPK-------FL--NASVGFGGSCFQKDIL 278 (480)
Q Consensus 208 ~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~~-------~~--~pg~g~gG~c~~kD~~ 278 (480)
+++++..+|+++|.+.++++..+.|...++++.|+|+++++++++..+.-++. ++ .+.|+|....+.||+.
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999876532211 11 3567899999999999
Q ss_pred HHHHHHHHCCCchhhhHHHHH
Q 011650 279 NLVYICECNGLPEVANYWKQV 299 (480)
Q Consensus 279 ~l~~~a~~~g~~~~~~~~~~~ 299 (480)
+..+.|++.|++ .++.+.+
T Consensus 81 l~~~~a~~~~~~--~p~~~~~ 99 (133)
T d1vpda1 81 NALDTSHGVGAQ--LPLTAAV 99 (133)
T ss_dssp HHHHHHHHHTCC--CHHHHHH
T ss_pred HHHHHHHHcCCC--ChHHHHH
Confidence 999999999998 5655543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.59 E-value=4.4e-07 Score=78.09 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (480)
+||+|||+|.+|.++|..++.+ +. ++.++|+++++++..... +....... ....+..+++.++++++|
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~--~~~el~L~D~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA 77 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCceEEEEEeccccchhHHHH--------HhhhccccCCeeEEeccCchhhhhcCC
Confidence 5899999999999999988877 54 899999998876654321 11111101 123466788888889999
Q ss_pred CEEEEEccCCCCcCCCCC-CCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 80 NIVFVSVNTPTKTQGLGA-GKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~-~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+|+++...+......+. ..+.| ...+++..+.|.++.++ .++++ .|.|....-
T Consensus 78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aivii-vsNPvd~lt 137 (154)
T d1pzga1 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIV-VTNPLDCMV 137 (154)
T ss_dssp SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEE-CCSSHHHHH
T ss_pred CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEE-eCCcHHHHH
Confidence 999999876543310000 01222 23466667777776654 55543 567876543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.58 E-value=2.1e-07 Score=79.06 Aligned_cols=117 Identities=23% Similarity=0.264 Sum_probs=76.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH----HcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAW----NSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l----~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.||+|||+|.+|.++|..++.++...++.++|+++++.+.. +.. ..+ .....+..++++++ ++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a-~~~-----------~~~~~i~~~~~~~~-~~ 68 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG-SSF-----------YPTVSIDGSDDPEI-CR 68 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT-GGG-----------STTCEEEEESCGGG-GT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc-ccc-----------CCCceeecCCCHHH-hh
Confidence 48999999999999999999873345899999999876542 211 111 11234556777765 89
Q ss_pred cCCEEEEEccCCCCcCCCCCCCC----CchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+||+|+++...|.... .++. .+.+.+++..+.|.++.+. .++++ -|.|....-.
T Consensus 69 daDvVVitaG~~~~~g---~~R~dl~~~N~~i~~~i~~~i~~~~p~-ai~iv-vtNPvDvmt~ 126 (143)
T d1llda1 69 DADMVVITAGPRQKPG---QSRLELVGATVNILKAIMPNLVKVAPN-AIYML-ITNPVDIATH 126 (143)
T ss_dssp TCSEEEECCCCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEE-CCSSHHHHHH
T ss_pred CCcEEEEecccccCCC---CchhhhhhhhHHHHHHHHHHHHhhCCC-eEEEE-eCCchHHHHH
Confidence 9999999998765431 1110 1234556666777777654 44433 4678776443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.48 E-value=8.2e-07 Score=76.67 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=73.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+|||+|.+|.++|..++.++.--++.++|+++++.+..... +..............+.++++ +++||+
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD--------l~h~~~~~~~~~~~~~~d~~~-~~~adi 91 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD--------LQHGSLFLQTPKIVADKDYSV-TANSKI 91 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH--------HHHTGGGCCCSEEEECSSGGG-GTTCSE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH--------HhccccccCCCeEEeccchhh-cccccE
Confidence 48999999999999999999882223899999998876543210 000000001123345567665 999999
Q ss_pred EEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
|+++...|.... ++ +.| ...+++..++|.++.++ .++++ -|.|....-
T Consensus 92 VVitAg~~~~~g---~t-R~~l~~~N~~i~~~i~~~i~~~~p~-aiiiv-vtNPvDv~t 144 (160)
T d1i0za1 92 VVVTAGVRQQEG---ES-RLNLVQRNVNVFKFIIPQIVKYSPD-CIIIV-VSNPVDILT 144 (160)
T ss_dssp EEECCSCCCCTT---CC-GGGGHHHHHHHHHHHHHHHHHHCTT-CEEEE-CSSSHHHHH
T ss_pred EEEecCCccccC---cc-hHHHHHHHHHHHHHHHHHHHhcCCC-cEEEE-eCCchHHHH
Confidence 999988765441 12 222 23455566677776554 44433 366766543
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.45 E-value=5.7e-07 Score=75.50 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCC--------------Cccc--cCCCCccccc
Q 011650 209 LWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIG--------------PKFL--NASVGFGGSC 272 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~--------------~~~~--~pg~g~gG~c 272 (480)
.+++..+|+++|.+...++..+.|+..++++.|+|++.++++++..+.-+ ..+. ++.+||....
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l 81 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL 81 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHH
Confidence 46789999999999999999999999999999999999999998654210 0111 3567788899
Q ss_pred hhhhHHHHHHHHHHCCCchhhhHHHHHH
Q 011650 273 FQKDILNLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 273 ~~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+.||+.+..+++++.|++ .++.+.+.
T Consensus 82 ~~KDl~l~~~~a~~~g~~--~p~~~~a~ 107 (134)
T d3cuma1 82 MAKDLGLAQEAAQASASS--TPMGSLAL 107 (134)
T ss_dssp HHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence 999999999999999998 66655444
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.43 E-value=3.7e-07 Score=76.51 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCC-------c-cc--cCCCCccccchhhhHH
Q 011650 209 LWSAEVSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAIGFDSRIGP-------K-FL--NASVGFGGSCFQKDIL 278 (480)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~gid~~~v~~~~~~~~~i~~-------~-~~--~pg~g~gG~c~~kD~~ 278 (480)
++.+..+|+++|.+...++..+.|...++++.|+|++.++++++..+.-++ . .. +..++|.-..+.||+.
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~ 80 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG 80 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence 357899999999999999999999999999999999999999987642111 0 11 3456788899999999
Q ss_pred HHHHHHHHCCCchhhhHHHHHH
Q 011650 279 NLVYICECNGLPEVANYWKQVI 300 (480)
Q Consensus 279 ~l~~~a~~~g~~~~~~~~~~~~ 300 (480)
+..+.|++.|+| .++...+.
T Consensus 81 l~~~~a~~~g~~--~pl~~~~~ 100 (132)
T d2cvza1 81 IAMGVLDGEKAP--SPLLRLAR 100 (132)
T ss_dssp HHHHHHTTTCCC--CHHHHHHH
T ss_pred HHHHHHHHcCCC--ChHHHHHH
Confidence 999999999998 55555443
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=1.2e-06 Score=76.71 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=54.8
Q ss_pred ceEEEECCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMA--VIALK--CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~ 76 (480)
|||+|||+|.+|.+++. .++.. .++.++.++|+|+++++..... +...... ...-++..++|.++++
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~i~~~td~~eaL 74 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI 74 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH--------HHHHHHhcCCCeEEEEeCChhhcc
Confidence 89999999999987543 23322 1246999999999987754320 1111111 1234577889999999
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.+||+|++++..
T Consensus 75 ~dad~Vv~~~~~ 86 (171)
T d1obba1 75 IDADFVINTAMV 86 (171)
T ss_dssp TTCSEEEECCCT
T ss_pred cCCCeEeeeccc
Confidence 999999998754
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=6.7e-07 Score=77.20 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=72.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH----cCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN----SDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~----~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||+|||+|.+|.++|..|+.++...++.++|+++++.+... ...... .......++|+++ +.
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~------------~~~~~~~~~d~~~-~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFL------------STPKIVFGKDYNV-SA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTC------------SCCEEEEESSGGG-GT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhc------------CCCeEEeccchhh-hc
Confidence 489999999999999999998733348999999987765322 111000 1123455677765 89
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCC----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAA----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+||+|+++...|.... .++.- +...+++....|.++.+ +.++++ -|.|....-
T Consensus 87 ~adivvitag~~~~~~---~~R~dll~~N~~i~~~i~~~i~~~~p-~~iviv-vtNPvDv~t 143 (159)
T d2ldxa1 87 NSKLVIITAGARMVSG---QTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIV-VTNPVDILT 143 (159)
T ss_dssp TEEEEEECCSCCCCTT---TCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEE-CSSSHHHHH
T ss_pred cccEEEEecccccCCC---CCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEE-eCCcHHHHH
Confidence 9999999988776542 12211 22333444444555444 455543 456776643
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.36 E-value=1.6e-06 Score=73.59 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=78.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
-||+|||+ |.+|.++|..|+.++---++.++|+++.+.+.+.-.+..... .......+++..+++++||
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~aD 70 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA----------TVKGYLGPEQLPDCLKGCD 70 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSC----------EEEEEESGGGHHHHHTTCS
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhc----------CCCeEEcCCChHHHhCCCC
Confidence 38999995 999999999999872224799999998765554321111000 0011222455667789999
Q ss_pred EEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH-HHHHHHhhc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA-IEKILMHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~ 145 (480)
+|+++-..|.... .+ +. +.+.+++..+.|.++.+ +.+|+. .|.|..+.-. +.+.+++.+
T Consensus 71 ivVitag~~~~~g---~s-R~~ll~~N~~i~~~i~~~i~~~~p-~~iiiv-vtNPvD~~t~~~~~~~kk~~ 135 (144)
T d1mlda1 71 VVVIPAGVPRKPG---MT-RDDLFNTNATIVATLTAACAQHCP-DAMICI-ISNPVNSTIPITAEVFKKHG 135 (144)
T ss_dssp EEEECCSCCCCTT---CC-GGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCcCCCCC---CC-cchHHHHHHHHHHHHHHHHHhcCC-CeEEEE-ecCchhhhHHHHHHHHHHhc
Confidence 9999988765441 12 22 23456667777777755 454443 4678776443 344555543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.35 E-value=1.5e-06 Score=76.76 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=73.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+++. ++ .....+++++.++.||+
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~--g~~v~~~d~~~~------~~-------------------~~~~~~~l~ell~~sDi 95 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK------EG-------------------PWRFTNSLEEALREARA 95 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC------CS-------------------SSCCBSCSHHHHTTCSE
T ss_pred ceEEEeccccccccceeeeecc--cccccccccccc------cc-------------------ceeeeechhhhhhccch
Confidence 4799999999999999999887 999999998642 11 11234577888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ +.....++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 96 v~~~~pl~~~t~-----~li~--------~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~ 145 (181)
T d1qp8a1 96 AVCALPLNKHTR-----GLVK--------YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER 145 (181)
T ss_dssp EEECCCCSTTTT-----TCBC--------HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred hhcccccccccc-----cccc--------cceeeeccccceEEeccccccccchhhhhhcccC
Confidence 999997532211 1222 3456778999999987644333345566777664
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.32 E-value=2.2e-06 Score=72.70 Aligned_cols=117 Identities=21% Similarity=0.355 Sum_probs=70.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHHHh-cCCCEE--EecCHHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVP--RINAWNSDQLPIYEPGLEEVVKQC-RGKNLF--FSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~--~t~d~~~a 75 (480)
|||+|||+ |.+|.++|..++.+..-.++.++|++++ +.+..... +....... ...+++ .+++++ +
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~d~~-~ 71 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLRED--------IYDALAGTRSDANIYVESDENLR-I 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHH--------HHHHHTTSCCCCEEEEEETTCGG-G
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccccc--------chhcccccccCCccccCCcchHH-H
Confidence 89999995 9999999999998721259999999863 33322210 11100000 011222 233555 5
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccH
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~ 134 (480)
+++||+|++|...|.... .+ +.| .+.+++..+.|.++.+ ..+++. |.|....
T Consensus 72 l~~aDvVVitAG~~~~~g---~s-R~dl~~~Na~iv~~i~~~i~~~~~-~~iivV--tNPvD~m 128 (145)
T d1hyea1 72 IDESDVVIITSGVPRKEG---MS-RMDLAKTNAKIVGKYAKKIAEICD-TKIFVI--TNPVDVM 128 (145)
T ss_dssp GTTCSEEEECCSCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHCC-CEEEEC--SSSHHHH
T ss_pred hccceEEEEecccccCCC---CC-hhhhhhhhHHHHHHHHHHHhccCC-CeEEEE--cCchHHH
Confidence 899999999987765441 11 222 2345666777777764 455443 6887754
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.31 E-value=1.7e-06 Score=73.26 Aligned_cols=114 Identities=19% Similarity=0.341 Sum_probs=67.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA----WNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~ 76 (480)
+||+|||+|.+|.++|..++.+....++.++|+++++.+. ++.. .++. +..+. +.+++ ++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~-~~~~-------------~~~~~~~~~~~-~~ 66 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-LPFM-------------GQMSLYAGDYS-DV 66 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-CCCT-------------TCEEEC--CGG-GG
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC-cccC-------------CCeeEeeCcHH-Hh
Confidence 5899999999999999999987333489999999876432 2211 1111 22333 34555 48
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
++||+|+++...+.... ++ +.| ...+++..+.+.++.++ .++++ -|.|....-.
T Consensus 67 ~~adivvitag~~~~~~---~~-r~~l~~~N~~i~~~i~~~i~~~~p~-ai~iv-vtNPvdv~t~ 125 (142)
T d1y6ja1 67 KDCDVIVVTAGANRKPG---ET-RLDLAKKNVMIAKEVTQNIMKYYNH-GVILV-VSNPVDIITY 125 (142)
T ss_dssp TTCSEEEECCCC---------C-HHHHHHHHHHHHHHHHHHHHHHCCS-CEEEE-CSSSHHHHHH
T ss_pred CCCceEEEecccccCcC---cc-hhHHhhHHHHHHHHHHHHhhccCCC-ceEEE-ecChHHHHHH
Confidence 99999999977654331 11 222 34455666667776654 44443 4778776433
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.30 E-value=3.3e-06 Score=72.02 Aligned_cols=123 Identities=17% Similarity=0.152 Sum_probs=75.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHH-HhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVK-QCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~-~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.+|.++|..++.+.- .++.++|+++++.+..... +..... ......+..+.++++ +++||
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~v~~~~~~~~-~~~ad 73 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTYDD-LAGAD 73 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCGGG-GTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecc--------hhhhccccCCCcEEEecccccc-cCCCc
Confidence 599999999999999988887622 4899999998776654321 000000 011234555666655 89999
Q ss_pred EEEEEccCCCCcCCCC-CCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 81 IVFVSVNTPTKTQGLG-AGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 81 vVii~Vptp~~~~~~~-~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
+|++|...+......+ ...+.| ...+++..+.|.++.+ +.++++ -|.|....-.
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aiviv-vtNPvD~~t~ 133 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIV-VTNPVDVMVQ 133 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSSHHHHHH
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEE-ecCchHHHHH
Confidence 9999987665431000 001233 2355666677777755 555544 5678776433
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.24 E-value=3.4e-06 Score=75.16 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=75.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+....-..-. .+....+++++.++.||+
T Consensus 50 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~--------------------~~~~~~~~l~~ll~~sD~ 107 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVERA--------------------LGLQRVSTLQDLLFHSDC 107 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHHHH--------------------HTCEECSSHHHHHHHCSE
T ss_pred ceEEEeccccccccceeeeecc--ccceeeccCcccccchhh--------------------hccccccchhhccccCCE
Confidence 4799999999999999998876 999999998533211000 124556788998999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ +.....++++.++|+.|-...=..+.+.+.|++.
T Consensus 108 i~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 157 (193)
T d1mx3a1 108 VTLHCGLNEHNH-----HLIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG 157 (193)
T ss_dssp EEECCCCCTTCT-----TSBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred EEEeecccccch-----hhhh--------HHHHhccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence 999998532221 1222 2345678999999997754443445577777654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.21 E-value=1.6e-06 Score=75.35 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=50.5
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh-cC
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~a 79 (480)
|||||||+|.+|.. ....+.+. ++.++.++|.++++.+.+.+.. +.....+|+++.++ +.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~i 63 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYGV 63 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGCC
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhc-----------------ccccccccHHHhccccc
Confidence 79999999999976 45555543 5779899999999988877521 11123456666554 67
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 64 D~V~I~tp~~ 73 (167)
T d1xeaa1 64 DAVMIHAATD 73 (167)
T ss_dssp SEEEECSCGG
T ss_pred ceeccccccc
Confidence 9999998754
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=6.5e-06 Score=69.77 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=75.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHH---HHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIG-AGYVGGPTMAVIALK-CPSIEVAVVDISVPRIN---AWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~---~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|||+||| .|.+|.++|..|+.+ ....++.++|+++.... .++....... ...+..+++++ ++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~------------~~~~~~~~~~~-~~ 67 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVK------------IKGFSGEDATP-AL 67 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCE------------EEEECSSCCHH-HH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccC------------CcEEEcCCCcc-cc
Confidence 8999999 599999999888653 23579999998753211 1222111100 01111234554 58
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH-HHHHHhh
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI-EKILMHN 144 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l-~~~l~~~ 144 (480)
++||+||++-..|..+. .+ +.| ...+++..++|.++.++. +|+. -|.|..+.-.+ .+.+...
T Consensus 68 ~~aDvvvitaG~~~k~g---~~-R~dl~~~N~~i~~~v~~~i~~~~p~a-iviv-vtNPvD~m~~~~~~v~~~~ 135 (145)
T d2cmda1 68 EGADVVLISAGVRRKPG---MD-RSDLFNVNAGIVKNLVQQVAKTCPKA-CIGI-ITNPVNTTVAIAAEVLKKA 135 (145)
T ss_dssp TTCSEEEECCSCCCCTT---CC-GGGGHHHHHHHHHHHHHHHHHHCTTS-EEEE-CSSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCccCCCC---cc-hhhHHHHHHHHHHHHHHHHHhhCCCc-EEEE-ccCCchHHHHHHHHHHHHc
Confidence 99999999987765441 11 333 345667777788877654 4433 46788775543 4444443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=2.3e-06 Score=74.10 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=50.6
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||||||+|.+|.. ....+... ++++++ ++|+++++.+.+.+.. ++.+.++.++.+++.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-~~~~i~~v~d~~~~~~~~~~~~~------------------~~~~~~~~~~l~~~~ 62 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICESW------------------RIPYADSLSSLAASC 62 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHHH------------------TCCBCSSHHHHHTTC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEEechhHhhhhhhhcc------------------cccccccchhhhhhc
Confidence 79999999999986 45555543 577766 5799988877765420 133466777777899
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 63 D~V~I~tp~~ 72 (164)
T d1tlta1 63 DAVFVHSSTA 72 (164)
T ss_dssp SEEEECSCTT
T ss_pred ccccccccch
Confidence 9999998854
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.17 E-value=5.6e-06 Score=73.40 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=75.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|.+||+....-..... ..+....++++.++.||+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~~l~~sD~ 103 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV 103 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred cceeeccccccchhhhhhhhcc--CceEEEEeecccccccccc-------------------ccccccCCHHHHHHhccc
Confidence 4899999999999999999876 8999999985322111111 124456788888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-.....+ -.+ ++....++++.++|+.|-...=..+.+.+.|++.
T Consensus 104 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g 153 (188)
T d2naca1 104 VTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRDAVARALESG 153 (188)
T ss_dssp EEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred hhhcccccccchh-----hhH--------HHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCC
Confidence 9999985432211 222 3345678999999987644333345566777664
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.17 E-value=9.7e-06 Score=71.32 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=54.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
+||||||+|.||...+..+... ++++|+ ++|+++++.+.+.+... + ....++.+|+++.++ +
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~ll~~~~ 66 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN-Y-------------PESTKIHGSYESLLEDPE 66 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT-C-------------CTTCEEESSHHHHHHCTT
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhccc-c-------------ccceeecCcHHHhhhccc
Confidence 6999999999999999888764 577887 46999998877654210 0 123467789988764 6
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|++|+|+.
T Consensus 67 iD~v~I~tp~~ 77 (184)
T d1ydwa1 67 IDALYVPLPTS 77 (184)
T ss_dssp CCEEEECCCGG
T ss_pred cceeeecccch
Confidence 79999998753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=1.3e-06 Score=72.88 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=52.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH-hhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-VREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aD 80 (480)
+++.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+.+......- +..+-...++++ +.+||
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~~~~~~~------------gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASYATHAVI------------ANATEENELLSLGIRNFE 66 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTTCSEEEE------------CCTTCTTHHHHHTGGGCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHhCCccee------------eecccchhhhccCCcccc
Confidence 4789999999999999999998 99999999999999998763321110 000000112232 67899
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
.+|++++.
T Consensus 67 ~vi~~~~~ 74 (134)
T d2hmva1 67 YVIVAIGA 74 (134)
T ss_dssp EEEECCCS
T ss_pred EEEEEcCc
Confidence 99999864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.14 E-value=3e-06 Score=73.62 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=53.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+||.|||+|.||.++|..|+++ ||+|+++|++.++++.+.+......... .........++.+...|+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~ 70 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHSTPIS----------LDVNDDAALDAEVAKHDL 70 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHHHHHHHHTTCTTEEEEE----------CCTTCHHHHHHHHTTSSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChHHHHHHHhccccccccc----------ccccchhhhHhhhhccce
Confidence 5899999999999999999998 9999999999999999987432110000 000011123445678899
Q ss_pred EEEEcc
Q 011650 82 VFVSVN 87 (480)
Q Consensus 82 Vii~Vp 87 (480)
++.++|
T Consensus 71 ~i~~~~ 76 (182)
T d1e5qa1 71 VISLIP 76 (182)
T ss_dssp EEECSC
T ss_pred eEeecc
Confidence 998876
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.13 E-value=1.2e-06 Score=77.05 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=38.7
Q ss_pred ceEEEE-CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCI-GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VI-GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||+|| |+|.||.++|..|+++ ||+|++++|++++++.+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 899999 8999999999999999 9999999999999888775
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.10 E-value=9.5e-06 Score=72.37 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=71.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|||||+|.+|..+|..+..- |.+|++||+....... ..+ . ...++++.++.||+
T Consensus 44 k~vgIiG~G~IG~~va~~l~~f--g~~V~~~d~~~~~~~~-~~~--------------------~-~~~~l~~~l~~sDi 99 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPELE-KKG--------------------Y-YVDSLDDLYKQADV 99 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHH-HTT--------------------C-BCSCHHHHHHHCSE
T ss_pred CeEEEecccccchhHHHhHhhh--cccccccCcccccccc-cce--------------------e-eecccccccccccc
Confidence 4799999999999999999876 9999999976543221 111 1 13467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|--... ..-.+ ++....++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 100 i~~~~plt~~T-----~~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~ 149 (197)
T d1j4aa1 100 ISLHVPDVPAN-----VHMIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 149 (197)
T ss_dssp EEECSCCCGGG-----TTCBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred ccccCCccccc-----ccccc--------HHHHhhhCCccEEEecCchhhhhhHHHHHHHhcc
Confidence 99999843221 11222 2234568899999986643333344566677653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.07 E-value=1.4e-05 Score=66.29 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=39.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|||.|+|+|.+|..+|..|.+. |++|+++|.|+++++.+.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~ 41 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASA 41 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhh
Confidence 8999999999999999999998 9999999999999998865
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.06 E-value=1e-05 Score=71.76 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=74.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|.+||+.......... .......++++.++.||+
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~ll~~sD~ 106 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEAS-------------------YQATFHDSLDSLLSVSQF 106 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHHHHCSE
T ss_pred cceEEeecccchHHHHHHHHhh--ccccccccccccccchhhc-------------------ccccccCCHHHHHhhCCe
Confidence 4799999999999999988876 8999999986432211111 012445678888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ +.....++++.++|+.|=...=..+.+.+.|++.
T Consensus 107 v~l~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g 156 (191)
T d1gdha1 107 FSLNAPSTPETR-----YFFN--------KATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 156 (191)
T ss_dssp EEECCCCCTTTT-----TCBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred EEecCCCCchHh-----heec--------HHHhhCcCCccEEEecCCccchhhHHHHHHHHcC
Confidence 999998532221 1222 3445678999999997644333345577777664
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.04 E-value=9.4e-06 Score=70.38 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=53.8
Q ss_pred ceEEEECCChhHHHHHH-HHHHcCCC---CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHh-cCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVGGPTMA-VIALKCPS---IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQC-RGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~-~La~~~~G---~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (480)
+||+|||.|.+|.+.+. .+....+. -++.++|+++++.+.... .++...... ...++..++|.++++
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~eal 75 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAG--------ACDVFIREKAPDIEFAATTDPEEAF 75 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHH--------HHHHHHHHHCTTSEEEEESCHHHHH
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHH--------HHHHHHHHhCCCcceEecCChhhcc
Confidence 58999999999987442 23322122 389999999998774332 011111111 224577899999999
Q ss_pred hcCCEEEEEccCC
Q 011650 77 REANIVFVSVNTP 89 (480)
Q Consensus 77 ~~aDvVii~Vptp 89 (480)
++||+||++...+
T Consensus 76 ~~AD~Vvitag~~ 88 (167)
T d1u8xx1 76 TDVDFVMAHIRVG 88 (167)
T ss_dssp SSCSEEEECCCTT
T ss_pred CCCCEEEECCCcC
Confidence 9999999998653
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.01 E-value=2.4e-05 Score=68.93 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=74.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++++|||+|.+|..+|..+..- |.+|++||+....-..... ... ..++++.++.||+
T Consensus 45 k~vgiiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~~~~~--------------------~~~-~~~l~ell~~sDi 101 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQL--------------------GIE-LLSLDDLLARADF 101 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHHH--------------------TCE-ECCHHHHHHHCSE
T ss_pred eeeeeccccchhHHHHHHhhhc--cceEEeecCCCChhHHhhc--------------------Cce-eccHHHHHhhCCE
Confidence 4799999999999999988765 8999999987544332221 123 2467888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.+ ++....++++.++|+.|=...=..+.+.+.|++.
T Consensus 102 v~~~~Plt~~T~-----~lin--------~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~ 151 (184)
T d1ygya1 102 ISVHLPKTPETA-----GLID--------KEALAKTKPGVIIVNAARGGLVDEAALADAITGG 151 (184)
T ss_dssp EEECCCCSTTTT-----TCBC--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred EEEcCCCCchhh-----hhhh--------HHHHhhhCCCceEEEecchhhhhhHHHHHHHhcC
Confidence 999998532221 1222 2455678999999997744433345577777654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=1.9e-05 Score=69.25 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=50.6
Q ss_pred ceEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--
Q 011650 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR-- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (480)
+||||||+|.+|.. .+..+.+....++++ ++|+++++.+.+.+.. +....++|+++.++
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------~~~~~~~~~~ell~~~ 66 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG 66 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc-----------------cccceeeeeecccccc
Confidence 37999999999986 466666531135666 6799999888776421 22356788988775
Q ss_pred cCCEEEEEccCC
Q 011650 78 EANIVFVSVNTP 89 (480)
Q Consensus 78 ~aDvVii~Vptp 89 (480)
+.|+|++|+|+.
T Consensus 67 ~id~v~I~tp~~ 78 (181)
T d1zh8a1 67 LVDAVDLTLPVE 78 (181)
T ss_dssp CCSEEEECCCGG
T ss_pred ccceeecccccc
Confidence 579999998753
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=1.7e-05 Score=70.12 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. .......++++.++.||+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~---------~~--------------~~~~~~~~l~ell~~sDi 99 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL---------PL--------------GNATQVQHLSDLLNMSDV 99 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC---------CC--------------TTCEECSCHHHHHHHCSE
T ss_pred eEEEEeecccchhhhhhhcccc--cceEeeccccccc---------hh--------------hhhhhhhhHHHHHhhccc
Confidence 4899999999999999988776 9999999975321 00 112334578888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.| ++..+.++++.++|+.|-.+.=..+.+.+.|++.
T Consensus 100 i~i~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~ 149 (188)
T d1sc6a1 100 VSLHVPENPSTK-----NMMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK 149 (188)
T ss_dssp EEECCCSSTTTT-----TCBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred eeecccCCcchh-----hhcc--------HHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence 999998432221 1233 2345668899999987654443445577777654
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.93 E-value=1.5e-05 Score=68.84 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=54.3
Q ss_pred ceEEEECCChhHHHHHHH-HHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHH--hcCCCEEEecCHHHH
Q 011650 2 VKICCIGAGYVGGPTMAV-IALK---CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQ--CRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~-La~~---~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~--~~~~~l~~t~d~~~a 75 (480)
|||+|||.|.+|.+.+.. ++.. .+..++.++|+++++.+.... +.+. ........+++.+++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d------------~~~~~~~~~~~~~~t~~~~~~ 68 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD------------FVKRLVKDRFKVLISDTFEGA 68 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH------------HHHHHHTTSSEEEECSSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH------------HHHhhhccCceEEEecCcccc
Confidence 899999999999888744 3322 123589999999998765332 1111 112446778888889
Q ss_pred hhcCCEEEEEccCC
Q 011650 76 VREANIVFVSVNTP 89 (480)
Q Consensus 76 ~~~aDvVii~Vptp 89 (480)
+++||+|+++...+
T Consensus 69 l~~aDvVVita~~~ 82 (162)
T d1up7a1 69 VVDAKYVIFQFRPG 82 (162)
T ss_dssp HTTCSEEEECCCTT
T ss_pred cCCCCEEEEecccC
Confidence 99999999998654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.92 E-value=2.4e-05 Score=67.18 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=55.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.+|.|||+|-||..++..|... |. +++++.|+.++.+.+.+.. .......++..+.+.++|
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt~~ka~~l~~~~----------------~~~~~~~~~~~~~l~~~D 86 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL----------------GGEAVRFDELVDHLARSD 86 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH----------------TCEECCGGGHHHHHHTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCcHHHHHHHHHhh----------------hcccccchhHHHHhccCC
Confidence 5799999999999999999998 76 7999999999988877521 011222346667789999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+||.|+++|
T Consensus 87 ivi~atss~ 95 (159)
T d1gpja2 87 VVVSATAAP 95 (159)
T ss_dssp EEEECCSSS
T ss_pred EEEEecCCC
Confidence 999999765
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.91 E-value=1.5e-05 Score=71.26 Aligned_cols=105 Identities=11% Similarity=0.188 Sum_probs=72.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. + ....+ .++++.++.||+
T Consensus 46 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~------~~----~------------~~~~~-~~l~~l~~~~D~ 100 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMK------GD----H------------PDFDY-VSLEDLFKQSDV 100 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCS------SC----C------------TTCEE-CCHHHHHHHCSE
T ss_pred eeeeeeeccccccccccccccc--ceeeeccCCccch------hh----h------------cchhH-HHHHHHHHhccc
Confidence 4799999999999999999876 9999999985321 10 0 12233 467888899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
|++++|-..... .-.| +.....++++.++|+.|-...=..+.+.+.|++.
T Consensus 101 v~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g 150 (199)
T d1dxya1 101 IDLHVPGIEQNT-----HIIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 150 (199)
T ss_dssp EEECCCCCGGGT-----TSBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred ceeeeccccccc-----cccc--------HHHhhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence 999998543221 1223 2344568999999997754433345566666653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.89 E-value=0.00011 Score=61.52 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=68.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHHhh
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV--PRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~ 77 (480)
.||+||| .|.+|.++|..++.+....++.++|++. +..+.... ++.... ....+.+ .+.++++ ++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~--------Dl~~~~--~~~~~~~i~~~~~~~-~~ 69 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAA--------DTNHGI--AYDSNTRVRQGGYED-TA 69 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHH--------HHHHHH--TTTCCCEEEECCGGG-GT
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeec--------chhhcc--cccCCceEeeCCHHH-hh
Confidence 4899999 6999999999999873334899999853 22221110 010000 0011222 3456665 89
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
+||+|+++...|.... ++ +. +...+++..++|.++.++ .+++. -|.|...
T Consensus 70 ~aDiVvitaG~~~~~g---~~-R~dl~~~N~~I~~~i~~~i~~~~p~-~i~iv-vtNPvDv 124 (142)
T d1o6za1 70 GSDVVVITAGIPRQPG---QT-RIDLAGDNAPIMEDIQSSLDEHNDD-YISLT-TSNPVDL 124 (142)
T ss_dssp TCSEEEECCCCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHTTCSC-CEEEE-CCSSHHH
T ss_pred hcCEEEEecccccccC---Cc-hhhHHHHHHHHHHHHHHHHHhcCCC-ceEEE-ecChHHH
Confidence 9999999987665431 11 12 234556666777766654 44433 3677765
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=2.3e-05 Score=66.98 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=71.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCC-------eEEEEeC--CHHHHHHHHc--CCCCCCCCChHHHHHHhcCCCEEEe
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDI--SVPRINAWNS--DQLPIYEPGLEEVVKQCRGKNLFFS 69 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~--~~~~v~~l~~--g~~~~~e~~l~~~~~~~~~~~l~~t 69 (480)
|||+|||+ |.+|.++|..|+.. +. ...++|. +.+..+.+.. ..... ........+
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~--~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 71 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-----------PLLAGLEAT 71 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-----------TTEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--cccccccchhHhHhccccchhhHcCchhhhhcccc-----------ccccccccC
Confidence 69999996 99999999999875 22 1233443 3333333221 00000 011345677
Q ss_pred cCHHHHhhcCCEEEEEccCCCCcCCCCCCCCC-----chHHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 70 TDVEKHVREANIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
++..++++++|+|+++-..|..+. .+ +. ....+++..+.|.++.+++.+|+.- |.|....-
T Consensus 72 ~~~~~~~~~advViitaG~~~~pg---~~-r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivv-sNPvDv~t 137 (154)
T d1y7ta1 72 DDPKVAFKDADYALLVGAAPRKAG---ME-RRDLLQVNGKIFTEQGRALAEVAKKDVKVLVV-GNPANTNA 137 (154)
T ss_dssp SCHHHHTTTCSEEEECCCCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHH
T ss_pred CchhhhcccccEEEeecCcCCCCC---Cc-HHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEe-cCcHHHHH
Confidence 777788999999999987665431 11 11 2456677778888888777766543 45766543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.84 E-value=8.6e-06 Score=70.08 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=72.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-Ee---cCHHHHhhc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FS---TDVEKHVRE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t---~d~~~a~~~ 78 (480)
||.|||.|..|+.-++..... |-+|+++|+++++.+++.+... +++. .. ..+++.+++
T Consensus 34 ~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~----------------~~~~~~~~~~~~l~~~~~~ 95 (168)
T d1pjca1 34 KVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG----------------SRVELLYSNSAEIETAVAE 95 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG----------------GGSEEEECCHHHHHHHHHT
T ss_pred EEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc----------------ccceeehhhhhhHHHhhcc
Confidence 799999999999977777776 9999999999999988775210 0111 11 134667899
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
||+||-++--|-.. .|-+ +.++..+.+++|.+||+.|.=..|.
T Consensus 96 aDivI~aalipG~~-------aP~l-----It~~mv~~Mk~GSVIVDvaidqGG~ 138 (168)
T d1pjca1 96 ADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGGC 138 (168)
T ss_dssp CSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred CcEEEEeeecCCcc-------cCee-----ecHHHHhhcCCCcEEEEeecCCCCc
Confidence 99999998655322 3322 3456778899999999977544443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.80 E-value=0.00011 Score=62.57 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=73.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHHh---cCCCEEEec
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQC---RGKNLFFST 70 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~~---~~~~l~~t~ 70 (480)
|||+|||+ |.+|.++|..|+... -+ .++..+|+++.. .+.+.-. +... .......++
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~ 71 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLME------------LQDCALPLLKDVIATD 71 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH------------HHHTCCTTEEEEEEES
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhh------------hcccccccccccccCc
Confidence 79999995 999999999998641 01 257778876543 2222210 0000 012356677
Q ss_pred CHHHHhhcCCEEEEEccCCCCcCCCCCCCCCch-----HHHHHHHHHHHhhCCCCcEEEEecCCCcccHH
Q 011650 71 DVEKHVREANIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (480)
Q Consensus 71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~ 135 (480)
+.+++++++|+|+++-..|.... .+ +.|+ ..+++..+.|.++.+...+++. -|.|....-
T Consensus 72 ~~~~~~~~~dvVVitag~~~~~g---~s-r~dll~~N~~i~k~~~~~i~k~a~~~~~iiv-vsNPvD~mt 136 (154)
T d5mdha1 72 KEEIAFKDLDVAILVGSMPRRDG---ME-RKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTNC 136 (154)
T ss_dssp CHHHHTTTCSEEEECCSCCCCTT---CC-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHH
T ss_pred ccccccCCceEEEEecccCCCCC---Cc-hhHHHHHhHHHHHHHHHHHHhhCCCceEEEE-ecCcHHHHH
Confidence 88888999999999987765541 12 2232 5566677777777776654443 356765543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=4.7e-05 Score=65.13 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=65.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++++|+|.|.+|..+|..+... |.+|+++|++|.+ +++.-. .+.+ ...++++..+|
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~~d--------------------G~~v-~~~~~a~~~ad 81 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAAME--------------------GYEV-TTMDEACQEGN 81 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT--------------------TCEE-CCHHHHTTTCS
T ss_pred CEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhhcC--------------------ceEe-eehhhhhhhcc
Confidence 4799999999999999999988 9999999999854 222222 2333 35678899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
+++.|+.+.- ..+. +-.+.++++.++.+.+...
T Consensus 82 ivvtaTGn~~---------vI~~--------eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 82 IFVTTTGCID---------IILG--------RHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp EEEECSSCSC---------SBCH--------HHHTTCCTTEEEEECSSST
T ss_pred EEEecCCCcc---------chhH--------HHHHhccCCeEEEEecccc
Confidence 9999977531 1222 2345688899888755443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.76 E-value=0.00012 Score=63.39 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=50.0
Q ss_pred ceEEEECCChhHHH--HHHHHHHcC--CCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHHH-hcCCCEEEecCHHH
Q 011650 2 VKICCIGAGYVGGP--TMAVIALKC--PSIEVAVVDISVPR--INAWNSDQLPIYEPGLEEVVKQ-CRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG~~G~~--lA~~La~~~--~G~~V~~~D~~~~~--v~~l~~g~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~ 74 (480)
|||+|||+|.+|.+ ++..+.... +.-++.++|+++++ .+.+..-. ...... ...-++..++|..+
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~--------~~~~~~~~~~~~~~~~td~~~ 73 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--------KRMVEKAGVPIEIHLTLDRRR 73 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--------HHHHHHTTCCCEEEEESCHHH
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHH--------HHHHHhcCCCceeeecCCchh
Confidence 79999999987754 344444320 12389999998854 33322100 000101 11235678899888
Q ss_pred HhhcCCEEEEEccCC
Q 011650 75 HVREANIVFVSVNTP 89 (480)
Q Consensus 75 a~~~aDvVii~Vptp 89 (480)
++++||+|+++...+
T Consensus 74 al~gaDvVv~ta~~~ 88 (169)
T d1s6ya1 74 ALDGADFVTTQFRVG 88 (169)
T ss_dssp HHTTCSEEEECCCTT
T ss_pred hcCCCCEEEEccccC
Confidence 899999999998754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.74 E-value=1.7e-05 Score=68.88 Aligned_cols=65 Identities=18% Similarity=0.459 Sum_probs=47.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
+||+|||+|.||..++..+... ++++++ ++|++++... ........+.++...+.|
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-~~~elvav~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~D 60 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATLDT----------------------KTPVFDVADVDKHADDVD 60 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCCSS----------------------SSCEEEGGGGGGTTTTCS
T ss_pred ceEEEECChHHHHHHHHHHHhC-CCcEEEEEEeccccccc----------------------ccccccchhhhhhccccc
Confidence 4799999999999999888764 578766 4677643210 023455667777678999
Q ss_pred EEEEEccCC
Q 011650 81 IVFVSVNTP 89 (480)
Q Consensus 81 vVii~Vptp 89 (480)
+|++|+|+.
T Consensus 61 ~Vvi~tp~~ 69 (170)
T d1f06a1 61 VLFLCMGSA 69 (170)
T ss_dssp EEEECSCTT
T ss_pred eEEEeCCCc
Confidence 999998864
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.74 E-value=6.5e-05 Score=66.53 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=79.9
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+ ..-+..+++.|..-|++|.+|||....+.... .
T Consensus 44 ~~eL~gktvgIiG~----------G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------------------~ 90 (193)
T d1mx3a1 44 AARIRGETLGIIGL----------GRVGQAVALRAKAFGFNVLFYDPYLSDGVERA-----------------------L 90 (193)
T ss_dssp CCCCTTCEEEEECC----------SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH-----------------------H
T ss_pred ceeeeCceEEEecc----------ccccccceeeeeccccceeeccCcccccchhh-----------------------h
Confidence 34688999999997 35788999999999999999999987653221 1
Q ss_pred ceEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
++....++++.++.+|+|+++.+. ++-+.+--.+..+.|++.+++|.+-+ ++|.+.+.
T Consensus 91 ~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~ 151 (193)
T d1mx3a1 91 GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALA 151 (193)
T ss_dssp TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHH
T ss_pred ccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHH
Confidence 345667899999999999999886 34444433455678988889999865 77875443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=2.1e-05 Score=70.11 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=53.4
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|+||.|+| .|.+|..++..|.++ ||+|++++|++++..........+.. +.+.-.+++.++++++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~~~~~~------------gD~~d~~~l~~al~~~ 68 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVV------------GDVLQAADVDKTVAGQ 68 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEEE------------SCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcChhhccccccccccccc------------ccccchhhHHHHhcCC
Confidence 67999999 699999999999998 99999999998875433321111111 1111123456678999
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+||.|++..
T Consensus 69 d~vi~~~g~~ 78 (205)
T d1hdoa_ 69 DAVIVLLGTR 78 (205)
T ss_dssp SEEEECCCCT
T ss_pred CEEEEEeccC
Confidence 9999998754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.64 E-value=0.00015 Score=63.07 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=73.9
Q ss_pred eEEEECC-ChhHHHHHHHHHHcC-CC----CeEEEEeCCHH--HHHHHHcC--CCCCCCCChHHHHHHhcCCCEEEecCH
Q 011650 3 KICCIGA-GYVGGPTMAVIALKC-PS----IEVAVVDISVP--RINAWNSD--QLPIYEPGLEEVVKQCRGKNLFFSTDV 72 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~--~v~~l~~g--~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (480)
||+|+|+ |.+|.+++..|+... -| .++.++|+++. ..+.+.-. .... + .......+++.
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~--~---------~~~~~~~~~~~ 94 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY--P---------LLREVSIGIDP 94 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC--T---------TEEEEEEESCH
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc--c---------cccCccccccc
Confidence 7999996 999999999998741 01 26677787653 22322210 0000 0 01245678888
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCc-----hHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~ 136 (480)
.++++++|+||++-..|.... .+ +.| ...+++..+.|.++.+++.+|+.- |.|..+.-.
T Consensus 95 ~~~~~~aDvVvi~ag~~rkpg---~t-R~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv-~NPvd~~t~ 158 (175)
T d7mdha1 95 YEVFEDVDWALLIGAKPRGPG---ME-RAALLDINGQIFADQGKALNAVASKNVKVLVV-GNPCNTNAL 158 (175)
T ss_dssp HHHTTTCSEEEECCCCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHH
T ss_pred hhhccCCceEEEeeccCCCCC---Cc-HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEe-cCcHHHHHH
Confidence 888999999999987665431 11 222 234566777888888877766543 457665443
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.63 E-value=6.5e-05 Score=67.98 Aligned_cols=73 Identities=8% Similarity=0.138 Sum_probs=50.9
Q ss_pred eEEEECCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--c
Q 011650 3 KICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--E 78 (480)
Q Consensus 3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (480)
||||||+|.+|.. +...+... ++.+|+ ++|+++++.+.+.+... + ....+...+|+++.++ +
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~-~~~~ivav~d~~~~~a~~~~~~~~-i------------~~~~~~~~~d~~ell~~~~ 100 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYG-V------------DPRKIYDYSNFDKIAKDPK 100 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTT-C------------CGGGEECSSSGGGGGGCTT
T ss_pred EEEEEcCcHHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhhc-c------------ccccccccCchhhhccccc
Confidence 7999999999974 45555443 477877 68999999887765210 0 0123455678888665 6
Q ss_pred CCEEEEEccCC
Q 011650 79 ANIVFVSVNTP 89 (480)
Q Consensus 79 aDvVii~Vptp 89 (480)
.|+|+||+|..
T Consensus 101 iD~V~I~tp~~ 111 (221)
T d1h6da1 101 IDAVYIILPNS 111 (221)
T ss_dssp CCEEEECSCGG
T ss_pred ceeeeeccchh
Confidence 89999998754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.55 E-value=7.3e-05 Score=65.02 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=71.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCC---CChHHHHHH---h--cCCCEE--EecCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYE---PGLEEVVKQ---C--RGKNLF--FSTDV 72 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e---~~l~~~~~~---~--~~~~l~--~t~d~ 72 (480)
||.|||.|..|+.-+...... |.+|+++|+++++.+++++-...+-+ ......... . ...... ....+
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l 108 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 108 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence 799999999999866666665 99999999999999988873322211 111110000 0 000000 01123
Q ss_pred HHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 73 EKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
.+.+.+||+||.++-.|-. +.|-+ +.++..+.+++|.+||+.+.-..|.
T Consensus 109 ~~~l~~aDlVI~talipG~-------~aP~l-----it~~mv~~Mk~GSVIVDvaidqGGn 157 (183)
T d1l7da1 109 LKELVKTDIAITTALIPGK-------PAPVL-----ITEEMVTKMKPGSVIIDLAVEAGGN 157 (183)
T ss_dssp HHHHTTCSEEEECCCCTTS-------CCCCC-----SCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HHHHHhhhhheeeeecCCc-------cccee-----ehHHHHHhcCCCcEEEEEeecCCCc
Confidence 4457899999999876632 23332 3466778899999999976434343
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.54 E-value=0.00012 Score=62.60 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=78.7
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.. ....+++.|.++|++|.+||..-...+.... .....+.+
T Consensus 2 kIgiIGlG~----------MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~----------------------~~~~~~~~ 49 (161)
T d1vpda2 2 KVGFIGLGI----------MGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------------------AGAETAST 49 (161)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------------TTCEECSS
T ss_pred EEEEEehhH----------HHHHHHHHHHHCCCeEEEEeCCcchhHHHHH----------------------hhhhhccc
Confidence 699999854 8999999999999999999975433221111 23567789
Q ss_pred hhhhcccCcEEEEeecCc-cccccc--HHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 406 AYEATKDSHGVCILTEWD-EFKNLD--YQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~-~~~~~~--~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
+.++++++|++++++..+ ..++.- .+.+...+++..+|+|.....+. +.+++.|+.|..-.
T Consensus 50 ~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (161)
T d1vpda2 50 AKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAP 119 (161)
T ss_dssp HHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceeccc
Confidence 999999999999998654 333321 12355666677799999997753 34556789887654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=8.1e-05 Score=57.66 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=46.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP--RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
+||+|+|+|..|.++|..|+++ |++|+++|.+.. ..+.++.+ ..+.+....++.+.++
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 65 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGLDKLPEA------------------VERHTGSLNDEWLMAA 65 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTGGGSCTT------------------SCEEESBCCHHHHHHC
T ss_pred CEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhHHHHhhc------------------cceeecccchhhhccC
Confidence 4799999999999999999998 999999998543 11111111 2233333334457899
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+||++-.-|
T Consensus 66 d~vi~SPGi~ 75 (93)
T d2jfga1 66 DLIVASPGIA 75 (93)
T ss_dssp SEEEECTTSC
T ss_pred CEEEECCCCC
Confidence 9999874433
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.50 E-value=0.00042 Score=60.46 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+. .-+-.+++.|..-|++|.+|||...+.. .
T Consensus 39 ~l~gk~vgIiG~G----------~IG~~va~~l~~~g~~v~~~d~~~~~~~----------------------------~ 80 (181)
T d1qp8a1 39 LIQGEKVAVLGLG----------EIGTRVGKILAALGAQVRGFSRTPKEGP----------------------------W 80 (181)
T ss_dssp CCTTCEEEEESCS----------THHHHHHHHHHHTTCEEEEECSSCCCSS----------------------------S
T ss_pred cccCceEEEeccc----------cccccceeeeeccccccccccccccccc----------------------------e
Confidence 4789999999973 5789999999999999999999754311 1
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+..++++.++.+|+|+++++- ++-+++=-.+..+.|++.+++|++-+ ++|.+.+.
T Consensus 81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~ 139 (181)
T d1qp8a1 81 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 139 (181)
T ss_dssp CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHH
T ss_pred eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhh
Confidence 2346789999999999998765 45555333456688998889999855 78876543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.47 E-value=0.00032 Score=61.79 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|..-|.+|.+|||.......... ..
T Consensus 43 ~~l~g~tvgIiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~----------------------~~ 90 (191)
T d1gdha1 43 EKLDNKTLGIYGFG----------SIGQALAKRAQGFDMDIDYFDTHRASSSDEAS----------------------YQ 90 (191)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH----------------------HT
T ss_pred ceecccceEEeecc----------cchHHHHHHHHhhccccccccccccccchhhc----------------------cc
Confidence 46789999999984 47888999999999999999998775433222 12
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.....++++.++.+|+|+++.+. ++-+++=-.+..+.|++.+++|.+-+ ++|.+.+-
T Consensus 91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~ 150 (191)
T d1gdha1 91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVV 150 (191)
T ss_dssp CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHH
Confidence 34567899999999999999988 55555433566788988889998865 88866543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.47 E-value=0.00028 Score=60.11 Aligned_cols=97 Identities=14% Similarity=0.277 Sum_probs=54.9
Q ss_pred ceEEEECCChhHHHH-HHHHHHcCCCCeEEEE-eCCHH--HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPT-MAVIALKCPSIEVAVV-DISVP--RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~~~-D~~~~--~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||||||+|.+|..+ ...|. ..+..+++.+ +++++ ......+...+....+.++++. ++ + ..
T Consensus 5 irvaIIGaG~ig~~~~~~~l~-~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~-----------~~-~-~~ 70 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLR-NAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIK-----------LP-E-FA 70 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHH-HCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHH-----------SG-G-GG
T ss_pred cEEEEEcCcHHHHHHHHHHHh-hCCcceEEEEEecchhccchhhhhhcCCcccccceeeeee-----------cc-c-cc
Confidence 589999999999864 45554 3456777664 77754 2223333333333333333221 11 1 35
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
+.|+||+|+|...+ .. -......++.|..|++.|.
T Consensus 71 ~iDiVf~ATpag~h--------------~~--~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 71 DIDFVFDATSASAH--------------VQ--NEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp GEEEEEECSCHHHH--------------HH--HHHHHHHHCTTCEEEECST
T ss_pred ccCEEEEcCCchhH--------------HH--hHHHHHHHHcCCEEEEccc
Confidence 78999999874211 11 1122334678999998874
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.46 E-value=0.0002 Score=63.45 Aligned_cols=102 Identities=10% Similarity=0.087 Sum_probs=77.1
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+. +-+..+++.|..-|++|.+|||....+....
T Consensus 38 g~el~gk~vgIiG~G----------~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~------------------------ 83 (197)
T d1j4aa1 38 GREVRDQVVGVVGTG----------HIGQVFMQIMEGFGAKVITYDIFRNPELEKK------------------------ 83 (197)
T ss_dssp BCCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHHHHT------------------------
T ss_pred CccccCCeEEEeccc----------ccchhHHHhHhhhcccccccCcccccccccc------------------------
Confidence 457889999999973 4788999999999999999999987643221
Q ss_pred ceEEecChhhhcccCcEEEEeecC-ccccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEW-DEFKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
. ....++++.++.+|+|+++.+. ++-++ ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 84 ~-~~~~~l~~~l~~sDii~~~~plt~~T~~li~~-~~l~~mk~~a~lIN~sRG~ivde~aL~ 143 (197)
T d1j4aa1 84 G-YYVDSLDDLYKQADVISLHVPDVPANVHMIND-ESIAKMKQDVVIVNVSRGPLVDTDAVI 143 (197)
T ss_dssp T-CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH-HHHHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred e-eeeccccccccccccccccCCccccccccccH-HHHhhhCCccEEEecCchhhhhhHHHH
Confidence 1 1246789999999999999876 33344 454 45678888889999855 78876543
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.39 E-value=0.00015 Score=64.34 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=75.6
Q ss_pred cCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+..+.+++|+|+|+ ..-+..+++.|..-|++|.+|||+...... .
T Consensus 40 ~~~l~~ktvgIiG~----------G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------------------------~ 84 (199)
T d1dxya1 40 GKELGQQTVGVMGT----------GHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-------------------------P 84 (199)
T ss_dssp CCCGGGSEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSSCCSSCC-------------------------T
T ss_pred cccccceeeeeeec----------ccccccccccccccceeeeccCCccchhhh-------------------------c
Confidence 35678999999997 346789999999999999999998654211 1
Q ss_pred ceEEecChhhhcccCcEEEEeecCc-cccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWD-EFKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
.+.+ .++++.++.+|.|+++++.. +-++ ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 85 ~~~~-~~l~~l~~~~D~v~~~~plt~~T~~li~~-~~l~~mk~~a~lIN~aRG~vvde~aL~ 144 (199)
T d1dxya1 85 DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINE-AAFNLMKPGAIVINTARPNLIDTQAML 144 (199)
T ss_dssp TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCH-HHHHHSCTTEEEEECSCTTSBCHHHHH
T ss_pred chhH-HHHHHHHHhcccceeeecccccccccccH-HHhhccCCceEEEecccHhhhhhHHHH
Confidence 2233 47899999999999998873 3344 454 55578888888998865 77876543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.38 E-value=0.00053 Score=60.13 Aligned_cols=104 Identities=9% Similarity=0.131 Sum_probs=80.2
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. +-+..+++.|..-|.+|.+|||........... +
T Consensus 40 ~~l~~~~vgiiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~----------------------~ 87 (188)
T d2naca1 40 YDLEAMHVGTVAAG----------RIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL----------------------N 87 (188)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH----------------------T
T ss_pred eeccccceeecccc----------ccchhhhhhhhccCceEEEEeeccccccccccc----------------------c
Confidence 46789999999963 468899999999999999999987665544432 2
Q ss_pred eEEecChhhhcccCcEEEEeecCcc-ccc-ccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDE-FKN-LDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+....++++.++.+|+|+++.+..+ -++ ++. +..+.|++.+++|.+-+ ++|.+.+.
T Consensus 88 ~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~ivd~~aL~ 147 (188)
T d2naca1 88 LTWHATREDMYPVCDVVTLNCPLHPETEHMIND-ETLKLFKRGAYIVNTARGKLCDRDAVA 147 (188)
T ss_dssp CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH-HHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred ccccCCHHHHHHhccchhhcccccccchhhhHH-HHHHhCCCCCEEEecCchhhhhHHHHH
Confidence 4567889999999999999888743 334 454 55678888889999866 78876544
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.34 E-value=0.00042 Score=60.24 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=54.7
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHHH-HHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVPR-INAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
|-||||.|.|.+|..++..+..+ +..+|+++ |+++.. ...+.....+.+...-... .....++....+..+...+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~g~~~~~~~~ 77 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIK--KFEESGIPVAGTVEDLIKT 77 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHH--HHHTTTCCCCCCHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-CCCEEEEEECCCCcHHHHHhcccCcceeccCccce--eccccceecCCchhhhhhc
Confidence 77999999999999999999875 57888875 555432 2222222222221111111 1122445566677887889
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|+|+.|+|.
T Consensus 78 vDiViecTG~ 87 (178)
T d1b7go1 78 SDIVVDTTPN 87 (178)
T ss_dssp CSEEEECCST
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.33 E-value=0.00049 Score=60.99 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=72.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
++|+|.|+|.+|..+|..|.+. |.+|+++|.++++++...... .+.. +.++.+ .+||
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~--Gakvvv~d~d~~~~~~~~~~g-------------------~~~~-~~~~~~~~~~D 85 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTERVAHAVALG-------------------HTAV-ALEDVLSTPCD 85 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT-------------------CEEC-CGGGGGGCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEecchHHHHHHHHhhc-------------------cccc-Cccccccccce
Confidence 4799999999999999999998 999999999999887765421 1222 234444 4899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCCCceEEeeCCcccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLA 160 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (480)
+++-|--.. ..+- +..+ .++ -.+| .+....|-+.+...++|.+.+ +.+.|.++.
T Consensus 86 I~iPcA~~~----------~I~~----~~a~----~i~-ak~i-~e~AN~p~~~~~~~~~L~~rg------I~~iPD~la 139 (201)
T d1c1da1 86 VFAPCAMGG----------VITT----EVAR----TLD-CSVV-AGAANNVIADEAASDILHARG------ILYAPDFVA 139 (201)
T ss_dssp EEEECSCSC----------CBCH----HHHH----HCC-CSEE-CCSCTTCBCSHHHHHHHHHTT------CEECCHHHH
T ss_pred eeecccccc----------cccH----HHHh----hhh-hhee-eccCCCCcchhhHHHHhcccc------eEEEehhhh
Confidence 988773211 2222 2222 333 2444 455555566666666777764 457887753
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.30 E-value=0.0011 Score=56.07 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=66.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
+++.|+|-|.+|..+|..+... |-+|+++++||-+ +|+.. ..++++ .+.+++++.+|+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DPi~--alqA~-----------------mdGf~v-~~~~~a~~~aDi 81 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPIC--AIQAV-----------------MEGFNV-VTLDEIVDKGDF 81 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHH--HHHHH-----------------TTTCEE-CCHHHHTTTCSE
T ss_pred CEEEEecccccchhHHHHHHhC--CCEEEEEecCchh--hHHHH-----------------hcCCcc-CchhHccccCcE
Confidence 4799999999999999999998 9999999999954 33321 123454 567888999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
+|.+++... -.+ .+-.+.++.+.||.+..-..
T Consensus 82 ~vTaTGn~~---------vI~--------~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 82 FITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp EEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTT
T ss_pred EEEcCCCCc---------ccc--------HHHHHHhhCCeEEEeccccc
Confidence 999987531 112 22345688999998755443
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.30 E-value=0.0002 Score=63.56 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=62.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcC----CCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKC----PSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~----~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
|+||+|||.|.-|.+-|.+|.+.+ .|.+|+ +...+....++..+..... .+.++ -+.+|+
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v--------------~~~~v-~~v~EA 108 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSE--------------ENGTL-GDMWET 108 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCG--------------GGTCE-EEHHHH
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCcc--------------CCCcc-cCHHHH
Confidence 468999999999999999999951 135554 4443333333333321110 00111 245778
Q ss_pred hhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 76 VREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
++.+|+|++.+|... -.++.++|.+++++++.+..
T Consensus 109 v~~ADiVmiLlPDe~---------------Q~~vy~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 109 ISGSDLVLLLISDSA---------------QADNYEKVFSHMKPNSILGL 143 (226)
T ss_dssp HHTCSEEEECSCHHH---------------HHHHHHHHHHHSCTTCEEEE
T ss_pred HhhCCEEEEecchHH---------------HHHHHHHHHHhcCCCceeee
Confidence 999999999987422 24567889999999998876
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.28 E-value=0.00071 Score=57.82 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=65.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||.|.-|.+-|.+|.+. |.+|++==+... ..++..+ .++++ -+++|+++.+|
T Consensus 17 k~IaViGYGsQG~AhAlNLrDS--G~~V~VGLr~gs~s~~~A~~-------------------~Gf~v-~~~~eA~~~aD 74 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEA-------------------HGLKV-ADVKTAVAAAD 74 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHH-------------------TTCEE-ECHHHHHHTCS
T ss_pred CEEEEEeeCcHhHHHHhhhhhc--CCCEEEEcCCCCccHHHHhh-------------------hcccc-ccHHHHhhhcC
Confidence 4799999999999999999998 999887544332 2232222 23443 46788899999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHH-HHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S 127 (480)
+|.+-+|... -.++. +.|.+++++++.+....
T Consensus 75 iim~L~PD~~---------------q~~vy~~~I~p~lk~g~~L~FaH 107 (182)
T d1np3a2 75 VVMILTPDEF---------------QGRLYKEEIEPNLKKGATLAFAH 107 (182)
T ss_dssp EEEECSCHHH---------------HHHHHHHHTGGGCCTTCEEEESC
T ss_pred eeeeecchHH---------------HHHHHHHhhhhhcCCCcEEEEec
Confidence 9999987421 14455 47999999999987654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.27 E-value=0.00053 Score=58.51 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=77.8
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
++|+|+|+.. ....+++.|.++|++|.+||-.....+.... .+...+.
T Consensus 2 ~kIg~IGlG~----------MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~----------------------~~~~~~~ 49 (162)
T d3cuma2 2 KQIAFIGLGH----------MGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----------------------AGASAAR 49 (162)
T ss_dssp CEEEEECCST----------THHHHHHHHHHTTCEEEEECSSHHHHHHHHH----------------------TTCEECS
T ss_pred CEEEEEEEHH----------HHHHHHHHHHHCCCeEEEEECchhhhhhhhh----------------------hhccccc
Confidence 4799999854 8889999999999999999964332221111 2345678
Q ss_pred ChhhhcccCcEEEEeecCccc-ccc--cHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 405 DAYEATKDSHGVCILTEWDEF-KNL--DYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~-~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
++.++++.+|.++++...+.= +++ ....+.....+..+|+|+..+.+. +.+++.|+.|...+
T Consensus 50 ~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dap 120 (162)
T d3cuma2 50 SARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP 120 (162)
T ss_dssp SHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred hhhhhccccCeeeecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecc
Confidence 899999999999999887641 111 112234445556699999998763 35557799998764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.23 E-value=0.00031 Score=60.02 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=66.4
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.. ..-.+++.|.++|.+|.+||+.-...+...+.+ .+....+
T Consensus 2 kI~iIG~G~----------mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~---------------------~~~~~~~ 50 (165)
T d2f1ka2 2 KIGVVGLGL----------IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ---------------------LVDEAGQ 50 (165)
T ss_dssp EEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT---------------------SCSEEES
T ss_pred EEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh---------------------ccceeee
Confidence 689999754 677899999999999999999743322222211 0112234
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
..++++++|.|+++++...+.+ -++++...+++..+|+|..+.-
T Consensus 51 ~~~~~~~~DiIilavp~~~~~~-vl~~l~~~l~~~~iv~~~~s~~ 94 (165)
T d2f1ka2 51 DLSLLQTAKIIFLCTPIQLILP-TLEKLIPHLSPTAIVTDVASVK 94 (165)
T ss_dssp CGGGGTTCSEEEECSCHHHHHH-HHHHHGGGSCTTCEEEECCSCC
T ss_pred ecccccccccccccCcHhhhhh-hhhhhhhhcccccceeeccccc
Confidence 5578999999999998776655 3467777777777999998774
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.19 E-value=0.0011 Score=57.76 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=78.7
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
..+.+++|+|+|+. .-...+++.|..-|.+|.+|||+..++.... . .
T Consensus 40 ~~l~~k~vgiiG~G----------~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~----------------------~ 86 (184)
T d1ygya1 40 TEIFGKTVGVVGLG----------RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-L----------------------G 86 (184)
T ss_dssp CCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-H----------------------T
T ss_pred ccccceeeeecccc----------chhHHHHHHhhhccceEEeecCCCChhHHhh-c----------------------C
Confidence 46789999999973 4778899999999999999999988765332 1 1
Q ss_pred eEEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
+. ..++++.++.+|+|+++.+. ++-+++=-++..+.|++.+++|.+-+ ++|.+.+.
T Consensus 87 ~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~ 145 (184)
T d1ygya1 87 IE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 145 (184)
T ss_dssp CE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHH
T ss_pred ce-eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHH
Confidence 23 35789999999999999886 55555433456688988889999865 77876554
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.16 E-value=0.00023 Score=61.85 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=45.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
||||||+|. ||+|.-+...|+++ |.+++..+--+...-+.+. +..............+.++...++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~~i~------------~~~p~~~~~~~~~~~~~~~~~~~~ 67 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKKLE------------EIFPSTLENSILSEFDPEKVSKNC 67 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSBHH------------HHCGGGCCCCBCBCCCHHHHHHHC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCCccc------------ccCchhhccccccccCHhHhcccc
Confidence 899999995 99999999999886 6778777643321111111 110000001111224556656789
Q ss_pred CEEEEEccC
Q 011650 80 NIVFVSVNT 88 (480)
Q Consensus 80 DvVii~Vpt 88 (480)
|++|.|+|.
T Consensus 68 dvvf~a~p~ 76 (176)
T d1vkna1 68 DVLFTALPA 76 (176)
T ss_dssp SEEEECCST
T ss_pred ceEEEcccc
Confidence 999999874
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.13 E-value=0.00097 Score=60.54 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=48.7
Q ss_pred ceEEEECCChhH----HHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 2 VKICCIGAGYVG----GPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G----~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
+||||||+|.+| ......+....++++++ ++|+++++.+++.+... ....+..+++++.+
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~ 81 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---------------LKHATGFDSLESFA 81 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---------------CTTCEEESCHHHHH
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc---------------cccceeecchhhcc
Confidence 589999998754 33344454433467877 68999998877654210 01234567888876
Q ss_pred h--cCCEEEEEccCC
Q 011650 77 R--EANIVFVSVNTP 89 (480)
Q Consensus 77 ~--~aDvVii~Vptp 89 (480)
. +.|+|++|+|+.
T Consensus 82 ~~~~iD~V~i~tp~~ 96 (237)
T d2nvwa1 82 QYKDIDMIVVSVKVP 96 (237)
T ss_dssp HCTTCSEEEECSCHH
T ss_pred cccccceeeccCCCc
Confidence 4 578999998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0018 Score=55.40 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=34.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |. +|+++|+++++.+..++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHHHc--CCceEEeccCCHHHHHHHHH
Confidence 689999999999888777766 76 79999999999998776
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.10 E-value=0.00086 Score=63.84 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=69.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..|....+-.+|.+|++++++.+++.+. + +. ..+....+.++++.+||+
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~-----------~-~~---~~~~~~~~~~~a~~~aDi 190 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY-----------C-ED---RGISASVQPAEEASRCDV 190 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH-----------H-HH---TTCCEEECCHHHHTSSSE
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHH-----------H-Hh---cCCccccchhhhhccccE
Confidence 46999999999999999998765556899999999998877641 1 11 123344566777999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+++..- ..+ ...+++|+.|...++..|+.
T Consensus 191 V~taT~s~~P--------~~~-----------~~~l~~G~hv~~iGs~~p~~ 223 (320)
T d1omoa_ 191 LVTTTPSRKP--------VVK-----------AEWVEEGTHINAIGADGPGK 223 (320)
T ss_dssp EEECCCCSSC--------CBC-----------GGGCCTTCEEEECSCCSTTC
T ss_pred EEEeccCccc--------ccc-----------hhhcCCCCeEeecCCccccc
Confidence 9999875321 111 24578899887655554443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0011 Score=57.97 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=75.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+.+++|+|+|+.. -+..+++.|..-|.+|.+|||...... ...
T Consensus 41 ~l~~~~vgiiG~G~----------IG~~va~~l~~fg~~v~~~d~~~~~~~--------------------------~~~ 84 (188)
T d1sc6a1 41 EARGKKLGIIGYGH----------IGTQLGILAESLGMYVYFYDIENKLPL--------------------------GNA 84 (188)
T ss_dssp CSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCCCC--------------------------TTC
T ss_pred cccceEEEEeeccc----------chhhhhhhcccccceEeeccccccchh--------------------------hhh
Confidence 57899999999854 788999999999999999999755321 112
Q ss_pred EEecChhhhcccCcEEEEeecC-cccccccHHHHHhhcCCCCEEEEcCC--CCChHHHh
Q 011650 401 IVASDAYEATKDSHGVCILTEW-DEFKNLDYQKIYNNMQKPAFVFDGRN--ILDVEKLR 456 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~ 456 (480)
....++++.++.+|+|+++.+. ++-+++=-+++.+.|++.+++|.+-+ ++|.+.+.
T Consensus 85 ~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~ 143 (188)
T d1sc6a1 85 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 143 (188)
T ss_dssp EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHH
T ss_pred hhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHH
Confidence 3446899999999999998875 44444333455678888778888865 88876543
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.03 E-value=0.001 Score=63.71 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=72.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.+++|||+|..+...+..+....+=.+|.+||+++++.+++.+.... +++ -.+..++++++++++||+
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~--~~g----------~~v~~~~s~~eav~~ADI 196 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YSG----------LTIRRASSVAEAVKGVDI 196 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CTT----------CEEEECSSHHHHHTTCSE
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh--ccC----------CCceecCCHHHHHhcCCc
Confidence 46999999999999998887765446899999999988877642100 011 236778999999999999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt 133 (480)
|+.|+.++... |=+. ...+++|+.|...+...|+.
T Consensus 197 i~t~Tas~s~~--------Pv~~---------~~~l~pG~hI~aiGs~~p~~ 231 (340)
T d1x7da_ 197 ITTVTADKAYA--------TIIT---------PDMLEPGMHLNAVGGDCPGK 231 (340)
T ss_dssp EEECCCCSSEE--------EEEC---------GGGCCTTCEEEECSCCBTTB
T ss_pred eeeccccCCCC--------cccc---------hhhcCCCCEEeecccchhhh
Confidence 99998765321 1110 24678898886555545554
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.02 E-value=0.00073 Score=58.68 Aligned_cols=31 Identities=19% Similarity=0.565 Sum_probs=27.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEE
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
||||+|+| .||+|.-+...|..+ |.+++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-PHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-CCCceEee
Confidence 89999999 699999999999986 67777654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.96 E-value=0.0012 Score=56.79 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=73.2
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+|+|.. +....++..|.++|++|.+||..-..-+.....+....+ .+............+
T Consensus 2 k~iaIiGaG----------~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 64 (184)
T d1bg6a2 2 KTYAVLGLG----------NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAE-------GPGLAGTAHPDLLTS 64 (184)
T ss_dssp CEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEE-------SSSCCEEECCSEEES
T ss_pred CEEEEECcc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchh-------hhhhhhhhhhhhhhh
Confidence 699999974 589999999999999999999864332222221100000 001111223344567
Q ss_pred ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 405 DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
++.++++++|.++++++-...++ -.++++..+.+..+|+...+...
T Consensus 65 ~~~e~~~~aD~iii~v~~~~~~~-~~~~i~~~l~~~~~iv~~~g~~~ 110 (184)
T d1bg6a2 65 DIGLAVKDADVILIVVPAIHHAS-IAANIASYISEGQLIILNPGATG 110 (184)
T ss_dssp CHHHHHTTCSEEEECSCGGGHHH-HHHHHGGGCCTTCEEEESSCCSS
T ss_pred hhHhHhcCCCEEEEEEchhHHHH-HHHHhhhccCCCCEEEEeCCCCc
Confidence 89999999999999997776544 34567777777778888877654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.87 E-value=0.0023 Score=49.46 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=45.4
Q ss_pred CceEEEECCChhH-HHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 1 MVKICCIGAGYVG-GPTMAVIALKCPSIEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
++||=+||.|-.| .++|..|.++ |++|+|+|... ...+.+.+.+.. +..-.+.+ -+.+
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~~Gi~-----------------v~~g~~~~-~i~~ 67 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGAK-----------------IYIGHAEE-HIEG 67 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTCE-----------------EEESCCGG-GGTT
T ss_pred CCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHHCCCe-----------------EEECCccc-cCCC
Confidence 3689999999999 5669999998 99999999864 333444432111 22222333 3688
Q ss_pred CCEEEEEcc
Q 011650 79 ANIVFVSVN 87 (480)
Q Consensus 79 aDvVii~Vp 87 (480)
+|+||+.-.
T Consensus 68 ~d~vV~S~A 76 (96)
T d1p3da1 68 ASVVVVSSA 76 (96)
T ss_dssp CSEEEECTT
T ss_pred CCEEEECCC
Confidence 999877744
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.85 E-value=0.0048 Score=52.39 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=35.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... |.+|+++|+++++.+.+++
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence 689999999999987766666 8999999999999988775
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.84 E-value=0.00071 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||+|||.|++|.-+|..|++. |.+|+++++.+
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL--GIDSYIFARGN 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhc--cccceeeehhc
Confidence 4799999999999999999988 99999999853
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.80 E-value=0.00069 Score=58.43 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=51.6
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEE-eCCHH-HHHHHHcCCCCCC--CCChHHHHHHhcCCCEEEecCHHHHh
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVP-RINAWNSDQLPIY--EPGLEEVVKQCRGKNLFFSTDVEKHV 76 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~-~v~~l~~g~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (480)
|.||||-|.|.+|..+...+..+ +..+|+.+ |+++. ....+.....+.+ .++....... .++....+..++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~v~g~~~~~~ 76 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEK---AGIEVAGTVDDML 76 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHH---TTCCCCEEHHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecc---cCcccCCChhHhh
Confidence 78999999999999999988765 35677654 55543 2223322222221 1111111121 2344455667777
Q ss_pred hcCCEEEEEccC
Q 011650 77 REANIVFVSVNT 88 (480)
Q Consensus 77 ~~aDvVii~Vpt 88 (480)
.++|+|+.|+|.
T Consensus 77 ~~vDvViEcTG~ 88 (171)
T d1cf2o1 77 DEADIVIDCTPE 88 (171)
T ss_dssp HTCSEEEECCST
T ss_pred cCCCEEEEccCC
Confidence 899999999774
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.0018 Score=49.29 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=46.4
Q ss_pred ceEEEECCChhHH-HHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISV-PRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||=+||.|-+|. ++|..|.++ |+.|.|.|+.+ +..++|++.+.+++. ..+.+. +.++
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~~t~~L~~~Gi~i~~-----------------gh~~~~-i~~~ 61 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETERTAYLRKLGIPIFV-----------------PHSADN-WYDP 61 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCCEES-----------------SCCTTS-CCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCChhHHHHHHCCCeEEe-----------------eecccc-cCCC
Confidence 8999999999998 678888888 99999999986 455566654333321 112222 5788
Q ss_pred CEEEEEc
Q 011650 80 NIVFVSV 86 (480)
Q Consensus 80 DvVii~V 86 (480)
|+||..-
T Consensus 62 d~vV~Ss 68 (89)
T d1j6ua1 62 DLVIKTP 68 (89)
T ss_dssp SEEEECT
T ss_pred CEEEEec
Confidence 9887764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.75 E-value=0.0026 Score=54.71 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
.++|+|+|+.. ....+++.|.++|++|.+||..-..-+....- ...+. ........
T Consensus 2 ~~nIg~IGlG~----------MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~---~~~~~-----------~~~~a~~~ 57 (176)
T d2pgda2 2 QADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---EAKGT-----------KVLGAHSL 57 (176)
T ss_dssp CBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---TTTTS-----------SCEECSSH
T ss_pred CCcEEEEeEhH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh---ccccc-----------cccchhhh
Confidence 46899999865 89999999999999999999765432211110 01110 01112234
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE------KLRKIGFIVYSI 465 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i 465 (480)
+++.+++..+|.++++..+.+--.--.+.+...+++..+|+|+...-... .+.+.|+.|..-
T Consensus 58 ~~~~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~lda 125 (176)
T d2pgda2 58 EEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS 125 (176)
T ss_dssp HHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhhhcccceEEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecc
Confidence 56677888999999988875422112456777777777999998877643 444678888654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.69 E-value=0.0005 Score=57.64 Aligned_cols=34 Identities=18% Similarity=0.432 Sum_probs=27.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHc-CCCCeEEEEeCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~ 35 (480)
|||||||+ ||+|.-+...|.++ .|..++..+.-+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 79999996 99999999999864 356677776543
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.58 E-value=0.00042 Score=59.70 Aligned_cols=67 Identities=12% Similarity=0.252 Sum_probs=39.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh--cC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR--EA 79 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~a 79 (480)
+||+|||+|.||...+..|.+......+.++|....+ .... ..... ..++++.+. +.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~~-~~~~~e~l~~~~i 66 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGS------------------LDEVR-QISLEDALRSQEI 66 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCE------------------ETTEE-BCCHHHHHHCSSE
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHH------------------hhccC-cCCHHHHHhCCCc
Confidence 5899999999999988887643101234444432211 0000 01222 346777664 67
Q ss_pred CEEEEEccCC
Q 011650 80 NIVFVSVNTP 89 (480)
Q Consensus 80 DvVii~Vptp 89 (480)
|+|++|+|+.
T Consensus 67 D~V~I~tp~~ 76 (172)
T d1lc0a1 67 DVAYICSESS 76 (172)
T ss_dssp EEEEECSCGG
T ss_pred chhhhccccc
Confidence 8999998864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.54 E-value=0.0022 Score=55.16 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=33.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |. +|++.|+++++.+..++
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTT--TCSCEEEECCCHHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcc--cccccccccchhhhHHHHHh
Confidence 689999999999866665554 65 79999999999887775
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0044 Score=51.72 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=41.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIGA-GYVGGPTMAVIALK--CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|.||||||+ |++|.-+...|.++ .+-.+++.+..+... +..+.+... .....-..+.. .+.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------g~~~~~~~~---------~~~~~~~~~~~-~~~ 64 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------QAAPSFGGT---------TGTLQDAFDLE-ALK 64 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------SBCCGGGTC---------CCBCEETTCHH-HHH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------cccccccCC---------ceeeecccchh-hhh
Confidence 789999997 99999999766653 123466666654321 111110000 01111223433 478
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|.|+|.
T Consensus 65 ~~DivF~a~~~ 75 (146)
T d1t4ba1 65 ALDIIVTCQGG 75 (146)
T ss_dssp TCSEEEECSCH
T ss_pred cCcEEEEecCc
Confidence 99999999874
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.0028 Score=54.20 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=52.9
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|-.+.+++..|.+. |.+|++++|+.++.+.+.+.... ...+...+..+.....+|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~~ka~~l~~~~~~--------------~~~~~~~~~~~~~~~~~dl 82 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQALSMDELEGHEFDL 82 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEECCSGGGTTCCCSE
T ss_pred CEEEEECCcHHHHHHHHHhccc--ceEEEeccchHHHHHHHHHHHhh--------------cccccccccccccccccce
Confidence 4799999999999999999998 88999999999999887752110 1233333322222467999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
||-|+|..
T Consensus 83 iIN~Tp~G 90 (170)
T d1nyta1 83 IINATSSG 90 (170)
T ss_dssp EEECCSCG
T ss_pred eecccccC
Confidence 99997754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.46 E-value=0.0011 Score=57.12 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=50.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHH-HHHHHcCCCCCCC--CChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPR-INAWNSDQLPIYE--PGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~-v~~l~~g~~~~~e--~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
+||||.|.|.+|..++..+..+ +..+|+. .|+++.. ...+.+...+.+. .+....... .++....+..+...
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 78 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEK---EGFEVAGTLNDLLE 78 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHH---HTCCCSCBHHHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecc---cCccccchhhhhhc
Confidence 6899999999999999988765 4677665 4665533 3333332222221 111111111 12344456677778
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|+|+.|+|.
T Consensus 79 ~vDvViEcTG~ 89 (172)
T d2czca2 79 KVDIIVDATPG 89 (172)
T ss_dssp TCSEEEECCST
T ss_pred cCCEEEECCCC
Confidence 99999999774
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.42 E-value=0.00083 Score=61.36 Aligned_cols=32 Identities=13% Similarity=0.338 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||+|||.|.-|+..|..|+++ |++|++++.+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~--G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR--GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecC
Confidence 8999999999999999999998 9999999975
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.41 E-value=0.0014 Score=58.92 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=29.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
||+|||.|..|++.|..|+++ |++|+++|++
T Consensus 8 kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~ 38 (268)
T d1c0pa1 8 RVVVLGSGVIGLSSALILARK--GYSVHILARD 38 (268)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred cEEEECccHHHHHHHHHHHHC--CCCEEEEeCC
Confidence 799999999999999999998 9999999985
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.40 E-value=0.0044 Score=50.46 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.5
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEE-Ee
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VD 33 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D 33 (480)
|||+|+|+ |.||..++..+.+. ++++.+ +|
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~--~~~l~~~id 32 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK--GHELVLKVD 32 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEC
Confidence 89999996 99999999988877 888764 44
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.39 E-value=0.0052 Score=48.68 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=30.0
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|.+|..-|..|.+. |.+|++++...
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~ 45 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEA--GARLTVNALTF 45 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 4799999999999999999998 99999998754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.38 E-value=0.012 Score=49.65 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-eEEEECCCCCh-hHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA-RLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
.++++++|+|+|. ...+..+++.|..+|+ +|.++..-... +.+...++.
T Consensus 20 ~~l~~~~ilviGa----------G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~------------------- 70 (159)
T d1gpja2 20 GSLHDKTVLVVGA----------GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG------------------- 70 (159)
T ss_dssp SCCTTCEEEEESC----------CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-------------------
T ss_pred CCcccCeEEEECC----------CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-------------------
Confidence 4689999999995 2467889999999998 59999976433 334444421
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhc-----CCCCEEEEcC--CCCChHHHhhcCcEEEEe
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNM-----QKPAFVFDGR--NILDVEKLRKIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~-----~~~~~i~D~~--~~~~~~~~~~~g~~y~~i 465 (480)
.....+++.+++..+|+||.+|.-+++- ++.+.+...+ .+|.+|||.- +-+++.--.-.|+.++.|
T Consensus 71 -~~~~~~~~~~~l~~~Divi~atss~~~i-i~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~l 143 (159)
T d1gpja2 71 -EAVRFDELVDHLARSDVVVSATAAPHPV-IHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTI 143 (159)
T ss_dssp -EECCGGGHHHHHHTCSEEEECCSSSSCC-BCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEH
T ss_pred -ccccchhHHHHhccCCEEEEecCCCCcc-ccHhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeH
Confidence 1122357788899999999999876644 4555555444 3566999973 123443333346666554
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0019 Score=55.04 Aligned_cols=72 Identities=10% Similarity=0.197 Sum_probs=43.5
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREA 79 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (480)
|||+|+|+ |.||..++..+.+. ++.++. ++|+..... +.+....+. +. ....+.+++++++....+
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~~~--~g~d~~~~~--~~-------~~~~~~~~~~~~~~~~~~ 72 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSL--LGSDAGELA--GA-------GKTGVTVQSSLDAVKDDF 72 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCTT--CSCCTTCSS--SS-------SCCSCCEESCSTTTTTSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccchh--ccchhhhhh--cc-------ccCCceeeccHHHHhccc
Confidence 79999995 99999999988775 366765 355532110 000000000 00 012356778888878899
Q ss_pred CEEEEE
Q 011650 80 NIVFVS 85 (480)
Q Consensus 80 DvVii~ 85 (480)
|+||=-
T Consensus 73 DViIDF 78 (162)
T d1diha1 73 DVFIDF 78 (162)
T ss_dssp SEEEEC
T ss_pred ceEEEe
Confidence 988755
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.30 E-value=0.0052 Score=51.49 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=70.3
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
||+|+|. ...+-.+++.|.+.|.+|.+||+..+.. ++...+ ++.+..
T Consensus 2 kIg~IG~----------G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~----------------------g~~~~~ 49 (152)
T d2ahra2 2 KIGIIGV----------GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------------------ALPYAM 49 (152)
T ss_dssp EEEEECC----------SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------------------TCCBCS
T ss_pred EEEEEec----------cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc----------------------ceeeec
Confidence 6888886 3477889999999999999999864432 222232 245667
Q ss_pred ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhh
Q 011650 405 DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~ 457 (480)
+..++++++|+|++++....+. ++...+++..+|++.-.-+..+.+++
T Consensus 50 ~~~~~~~~~dvIilavkp~~~~-----~vl~~l~~~~~iis~~agi~~~~l~~ 97 (152)
T d2ahra2 50 SHQDLIDQVDLVILGIKPQLFE-----TVLKPLHFKQPIISMAAGISLQRLAT 97 (152)
T ss_dssp SHHHHHHTCSEEEECSCGGGHH-----HHHTTSCCCSCEEECCTTCCHHHHHH
T ss_pred hhhhhhhccceeeeecchHhHH-----HHhhhcccceeEecccccccHHHHHh
Confidence 8999999999999999865543 44555566668999988888777665
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.20 E-value=0.0021 Score=55.21 Aligned_cols=72 Identities=8% Similarity=0.087 Sum_probs=52.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|.++.+++..|.+. +.+|++++|+.++.+.+.+.... ...+......+..+..+|+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~~~~a~~l~~~~~~--------------~~~~~~~~~~~~~~~~~di 82 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERFQP--------------YGNIQAVSMDSIPLQTYDL 82 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHHGG--------------GSCEEEEEGGGCCCSCCSE
T ss_pred CEEEEECCcHHHHHHHHHHccc--CceeeeccchHHHHHHHHHHHhh--------------ccccchhhhccccccccce
Confidence 4799999999999999999986 78999999999999887652100 0223333222223578999
Q ss_pred EEEEccCC
Q 011650 82 VFVSVNTP 89 (480)
Q Consensus 82 Vii~Vptp 89 (480)
+|=|+|..
T Consensus 83 iIN~tp~g 90 (171)
T d1p77a1 83 VINATSAG 90 (171)
T ss_dssp EEECCCC-
T ss_pred eeeccccc
Confidence 99998753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.011 Score=50.60 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=33.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|...+..+... |. +|+++|+++++.+.+++
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCccchhheeccccc--cccccccccccccccccccc
Confidence 689999999999777666665 76 79999999999988775
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.18 E-value=0.013 Score=48.69 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=40.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALK--CPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
||||||| .||+|.-+...|.++ .|..++..+.-+.. .|..+...... .......+.+ .+.+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~------~gk~~~~~~~~---------~~~~~~~~~~-~~~~ 64 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI------GVPAPNFGKDA---------GMLHDAFDIE-SLKQ 64 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC------SSBCCCSSSCC---------CBCEETTCHH-HHTT
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc------cccccccCCcc---------eeeecccchh-hhcc
Confidence 8999998 599999999877653 12345555543311 12222111000 1112223433 4789
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|++|.|+|.
T Consensus 65 ~DvvF~alp~ 74 (147)
T d1mb4a1 65 LDAVITCQGG 74 (147)
T ss_dssp CSEEEECSCH
T ss_pred ccEEEEecCc
Confidence 9999999874
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.10 E-value=0.0019 Score=58.42 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=31.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|||.|..|+.+|..|+++ |++|+++|+++
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~ 37 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA--GVDVDVYERSP 37 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence 6999999999999999999998 99999999864
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.012 Score=49.83 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=53.2
Q ss_pred ceEEEECCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+. +|.|+|..|..+ |..|+.++.. |.++.+.+++||
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~--gatVt~~h~~---------------------------------t~~l~~~~~~AD 82 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD 82 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred ceEEEEeccccccHHHHHHHHHh--hccccccccc---------------------------------cchhHHHHhhhh
Confidence 4799999765 999999999988 8999988742 224455578999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEe
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ 126 (480)
+||.+++-|-.- . ...++++++||+.
T Consensus 83 ivI~a~G~p~~i---------~-----------~~~vk~g~vvIDv 108 (166)
T d1b0aa1 83 LLIVAVGKPGFI---------P-----------GDWIKEGAIVIDV 108 (166)
T ss_dssp EEEECSCCTTCB---------C-----------TTTSCTTCEEEEC
T ss_pred HhhhhccCcccc---------c-----------ccccCCCcEEEec
Confidence 999999865321 1 2357889999874
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.09 E-value=0.0052 Score=51.37 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=65.9
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|+.- ....+++.|.++|++|.+||..-........ .++.+..+
T Consensus 2 kIgiIG~G~----------mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~ 49 (152)
T d1i36a2 2 RVGFIGFGE----------VAQTLASRLRSRGVEVVTSLEGRSPSTIERA----------------------RTVGVTET 49 (152)
T ss_dssp EEEEESCSH----------HHHHHHHHHHHTTCEEEECCTTCCHHHHHHH----------------------HHHTCEEC
T ss_pred EEEEEcHHH----------HHHHHHHHHHHCCCeEEEEcCchhHHHHHhh----------------------hccccccc
Confidence 799999754 8999999999999999999987655433222 12334678
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
+.++++++|+|++++..++..+. ...+.... ...++|+..+-.
T Consensus 50 ~~e~~~~~diIi~~v~~~~~~~~-~~~~~~~~--~~~~id~st~~p 92 (152)
T d1i36a2 50 SEEDVYSCPVVISAVTPGVALGA-ARRAGRHV--RGIYVDINNISP 92 (152)
T ss_dssp CHHHHHTSSEEEECSCGGGHHHH-HHHHHTTC--CSEEEECSCCCH
T ss_pred HHHHHhhcCeEEEEecCchHHHH-HHhhcccC--CceeeccCcCCH
Confidence 89999999999999998765432 22233332 348999987764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.03 E-value=0.0039 Score=53.21 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=49.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|.|+|+|.+|.+++..|.+. |. +|++++|++++.+.+.+.. + .....+.. ..++|
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~~~ka~~L~~~~-----------------~-~~~~~~~~--~~~~D 75 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY-----------------G-YAYINSLE--NQQAD 75 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH-----------------T-CEEESCCT--TCCCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEecccHHHHHHHHHhh-----------------h-hhhhhccc--ccchh
Confidence 4799999999999999999998 75 7999999999998876410 1 12222222 36799
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
+||=|+|-
T Consensus 76 liINaTpi 83 (167)
T d1npya1 76 ILVNVTSI 83 (167)
T ss_dssp EEEECSST
T ss_pred hheecccc
Confidence 99999774
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.049 Score=45.76 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCC
Q 011650 310 FVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHL 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
.++-+.+..+..+.+++|+|+|... -...+++.|...|++|.+||+.-. ..++..+
T Consensus 10 ~~~~~~r~t~~~l~Gk~v~V~GyG~----------iG~g~A~~~rg~G~~V~v~e~dp~-~al~A~~------------- 65 (163)
T d1li4a1 10 LIDGIKRATDVMIAGKVAVVAGYGD----------VGKGCAQALRGFGARVIITEIDPI-NALQAAM------------- 65 (163)
T ss_dssp HHHHHHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHH-HHHHHHH-------------
T ss_pred HHHHHHHHhCceecCCEEEEecccc----------ccHHHHHHHHhCCCeeEeeecccc-hhHHhhc-------------
Confidence 3445556666678999999999654 678899999999999999999632 2333322
Q ss_pred CCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC----hHHHhhcCcEEEEe
Q 011650 390 QPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD----VEKLRKIGFIVYSI 465 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~----~~~~~~~g~~y~~i 465 (480)
+++.+ .++++++..+|.+|.+|..+.. ++.+.+ +.|+..+++.. -+-|+ -+.+++....-..+
T Consensus 66 --------dG~~v-~~~~~a~~~adivvtaTGn~~v--I~~eh~-~~MKdgaIL~N-~Ghfd~EId~~~L~~~~~~~~~v 132 (163)
T d1li4a1 66 --------EGYEV-TTMDEACQEGNIFVTTTGCIDI--ILGRHF-EQMKDDAIVCN-IGHFDVEIDVKWLNENAVEKVNI 132 (163)
T ss_dssp --------TTCEE-CCHHHHTTTCSEEEECSSCSCS--BCHHHH-TTCCTTEEEEE-CSSSTTSBCHHHHHHHCSEEEEE
T ss_pred --------CceEe-eehhhhhhhccEEEecCCCccc--hhHHHH-HhccCCeEEEE-eccccceecHHHHhhccceeeee
Confidence 33444 4789999999999999997542 666665 67887755544 44443 34454444444444
Q ss_pred c
Q 011650 466 G 466 (480)
Q Consensus 466 G 466 (480)
.
T Consensus 133 ~ 133 (163)
T d1li4a1 133 K 133 (163)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.018 Score=48.99 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=54.3
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
++|+|||-+ .+|.|+|..|+.+ |..|+.++.. |.++.+.++++|
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~--gatVt~~~~~---------------------------------t~~l~~~~~~aD 84 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSK---------------------------------TAHLDEEVNKGD 84 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred ceEEEEecCCccchHHHHHHHhc--cCceEEEecc---------------------------------cccHHHHHhhcc
Confidence 479999975 5999999999998 9999998863 223445578999
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
++|.+++.|-.- . ...++++.+|++..
T Consensus 85 ivi~a~G~~~~i---------~-----------~~~vk~g~iviDvg 111 (170)
T d1a4ia1 85 ILVVATGQPEMV---------K-----------GEWIKPGAIVIDCG 111 (170)
T ss_dssp EEEECCCCTTCB---------C-----------GGGSCTTCEEEECC
T ss_pred chhhcccccccc---------c-----------cccccCCCeEeccC
Confidence 999999876321 1 24678999998754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.91 E-value=0.0029 Score=54.60 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=30.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~ 37 (480)
.||+|||.|..|+..|..|+++ |+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL--GYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCc
Confidence 4899999999999999999998 88 5999998754
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.90 E-value=0.004 Score=49.63 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|.|||.|++|+-+|..|++. |.+|+++++.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeeccc--ccEEEEEEecce
Confidence 4799999999999999999998 999999998653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.87 E-value=0.011 Score=49.71 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |.+|+++|+++++.+..++
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence 689999999999877666555 8999999999999988776
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.84 E-value=0.015 Score=49.56 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=33.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |. .|++.|.++++.+..++
T Consensus 31 ~VlI~G~G~iG~~~~~~ak~~--g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 31 SFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp EEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCHHHhhhhhccccc--ccceeeeeccHHHHHHHHHH
Confidence 699999999999988777666 54 56788999999888775
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.83 E-value=0.00073 Score=60.46 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA 30 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~ 30 (480)
|||+|||+|.+|+++|..|+++ |++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~--G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER--YHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--HTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCce
Confidence 8999999999999999999998 87643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.0046 Score=49.78 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+++|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhh--CcceeEEEecc
Confidence 4799999999999999999998 99999999864
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0038 Score=53.95 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=31.7
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
.||+|||.|..|+..|..|+++ ||+|++||.++..
T Consensus 44 k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 44 KNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEI 78 (179)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSS
T ss_pred cEEEEECccHHHHHHHHHHHhh--ccceEEEeccCcc
Confidence 4799999999999999999998 9999999987643
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.68 E-value=0.0027 Score=55.17 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=27.0
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+||||+| .||+|.-+.+.|.++ |.+++..+.-
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S 38 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTA 38 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEEC
T ss_pred cEEEEECcccHHHHHHHHHHHhC-CCceEEEEec
Confidence 5899999 599999999999986 7788877653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.67 E-value=0.0034 Score=57.82 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=31.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+|.|||+|..|+.+|..|+++ |++|+++|+.++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCC
Confidence 599999999999999999999 9999999997643
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.65 E-value=0.0051 Score=53.47 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|||.|||.|+.|..+|..|.+.+++.+|++++++.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 89999999999999999999876678999999764
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.65 E-value=0.016 Score=45.65 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=55.2
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
++++++|+|+|.. .-+..-++.|.+.|++|.+++|...++.... ... ..+
T Consensus 9 ~l~~k~vlVvG~G----------~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~-~~~-------------------~~i 58 (113)
T d1pjqa1 9 QLRDRDCLIVGGG----------DVAERKARLLLEAGARLTVNALTFIPQFTVW-ANE-------------------GML 58 (113)
T ss_dssp CCBTCEEEEECCS----------HHHHHHHHHHHHTTBEEEEEESSCCHHHHHH-HTT-------------------TSC
T ss_pred EeCCCEEEEECCC----------HHHHHHHHHHHHCCCeEEEEeccCChHHHHH-Hhc-------------------CCc
Confidence 5789999999974 3788999999999999999999998764322 110 112
Q ss_pred EEec--ChhhhcccCcEEEEeecCcccc
Q 011650 401 IVAS--DAYEATKDSHGVCILTEWDEFK 426 (480)
Q Consensus 401 ~~~~--~~~~a~~~~d~~vi~~~~~~~~ 426 (480)
++.. -.++.+++++.++++|+.++..
T Consensus 59 ~~~~~~~~~~dl~~~~lv~~at~d~~~n 86 (113)
T d1pjqa1 59 TLVEGPFDETLLDSCWLAIAATDDDTVN 86 (113)
T ss_dssp EEEESSCCGGGGTTCSEEEECCSCHHHH
T ss_pred eeeccCCCHHHhCCCcEEeecCCCHHHH
Confidence 2211 1234588999999999998854
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.63 E-value=0.0046 Score=54.43 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=49.5
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCe--EEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIE--VAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~--V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
|++|.|.| .|.+|..++..|+++ ||+ |+...+++++.+.+..+...+ .-+ +.-..+..++++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~--g~~v~v~~~~R~~~~~~~~~~~~~~~-~~d------------~~~~~~~~~~~~ 67 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG--SDKFVAKGLVRSAQGKEKIGGEADVF-IGD------------ITDADSINPAFQ 67 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT--TTTCEEEEEESCHHHHHHTTCCTTEE-ECC------------TTSHHHHHHHHT
T ss_pred CCEEEEECCccHHHHHHHHHHHHC--CCcEEEEEEcCCHHHHHhccCCcEEE-Eee------------eccccccccccc
Confidence 68999998 699999999999998 765 556678888877665432111 100 100123345678
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|.||.+...
T Consensus 68 ~~d~vi~~a~~ 78 (252)
T d2q46a1 68 GIDALVILTSA 78 (252)
T ss_dssp TCSEEEECCCC
T ss_pred cceeeEEEEee
Confidence 89999988643
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.62 E-value=0.0049 Score=58.34 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=31.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|+||+|||+|.-|+.+|..|++.+.+++|++++++.
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 578999999999999999998763357999999975
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.57 E-value=0.0064 Score=48.89 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|+|||.|++|.-+|..|++. |++|+++++.+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA--GVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcc--cceEEEEeeccc
Confidence 4799999999999999999998 999999998753
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.006 Score=48.57 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.||.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~--G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc--ccEEEEEeecc
Confidence 4799999999999999999998 99999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.55 E-value=0.024 Score=47.81 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=65.8
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--eEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKA--RLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
++|+|+|+.. -.-.+++.|.+.|. +|.+||+.....+.....+ ... ..
T Consensus 2 k~I~IIG~G~----------mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~------------------~~~--~~ 51 (171)
T d2g5ca2 2 QNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------------------IID--EG 51 (171)
T ss_dssp CEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------------------SCS--EE
T ss_pred CEEEEEccCH----------HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh------------------cch--hh
Confidence 3799999854 78889999999985 7899999754433333221 001 12
Q ss_pred ecChh-hhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 403 ASDAY-EATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 403 ~~~~~-~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
.++.. .....+|+++++|+-..+.+. ..++...+++..+|+|..+.-..
T Consensus 52 ~~~~~~~~~~~~dlIila~p~~~~~~v-l~~l~~~~~~~~ii~d~~s~k~~ 101 (171)
T d2g5ca2 52 TTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKGK 101 (171)
T ss_dssp ESCGGGGGGTCCSEEEECSCHHHHHHH-HHHHHHHSCTTCEEEECCSCCTH
T ss_pred hhhhhhhhccccccccccCCchhhhhh-hhhhhccccccccccccccccHH
Confidence 23333 344589999999998776652 35677777777899999987653
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.03 Score=46.35 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=31.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRI 39 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
.|-|+|+|.+|..++..|.+. |++|+++|.++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~~ 39 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDD 39 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchhH
Confidence 488999999999999999998 99999999998653
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.50 E-value=0.0044 Score=56.47 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.|||.|.+|+++|..|+++ |++|+++|.++
T Consensus 7 vvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE--NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 99999999999999999998 99999999863
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.49 E-value=0.0046 Score=57.24 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+|||.|..|++.|..|+++ |++|+++|.++
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~ 63 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASE 63 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence 4899999999999999999999 99999999753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.46 E-value=0.0048 Score=55.97 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+||+|||.|.-|+..|..|+++ |++|+++|.+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 6899999999999999999998 9999999975
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.45 E-value=0.006 Score=57.49 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+||+|||+|.-|++.|..|+++ |++|++++.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 36899999999999999999998 99999999753
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.017 Score=43.81 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=50.4
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++||+|+|+.= ..+.+++.|.++|++|.++|....++... .+. ..-.+
T Consensus 2 ~~~~K~v~ViGlG~----------sG~s~a~~L~~~g~~v~~~D~~~~~~~~~-~~~------------------~~~~~ 52 (93)
T d2jfga1 2 DYQGKNVVIIGLGL----------TGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLP------------------EAVER 52 (93)
T ss_dssp CCTTCCEEEECCSH----------HHHHHHHHHHHTTCCCEEEESSSSCTTGG-GSC------------------TTSCE
T ss_pred CcCCCEEEEEeECH----------HHHHHHHHHHHCCCEEEEeeCCcCchhHH-HHh------------------hccce
Confidence 46899999999843 57889999999999999999876544321 110 00112
Q ss_pred EEecChhhhcccCcEEEEeecCcc
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
.+.....+.+.++|.+|+....+.
T Consensus 53 ~~~~~~~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 53 HTGSLNDEWLMAADLIVASPGIAL 76 (93)
T ss_dssp EESBCCHHHHHHCSEEEECTTSCT
T ss_pred eecccchhhhccCCEEEECCCCCC
Confidence 222223455678999998777663
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.38 E-value=0.0061 Score=54.19 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=31.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|||.|.-|++.|..|+++..||+|++||..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 589999999999999999987655899999998753
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.38 E-value=0.01 Score=53.26 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=71.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh-hcCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV-REAN 80 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (480)
++|+|-|.|.||..+|..|.+. |..|++.|.++..++.+.... + .... +.++.+ .+||
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~--Gakvv~~d~~~~~~~~~~~~~-----------------g-~~~~-~~~~~~~~~cD 98 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD 98 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEeecccHHHHHHHHHhc-----------------C-Cccc-CCccccccccc
Confidence 4799999999999999999998 999999999999887765411 1 1222 233333 4899
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecC-CCcccHHHHHHHHHhhcCCCceEEeeCCccc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST-VPVKTAEAIEKILMHNSRGINFQILSNPEFL 159 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (480)
+++-|--.. ..+.. .. +.++ -++|+ +.. .++.+. +..++|.+.+ +++.|.++
T Consensus 99 Il~PcA~~~----------~I~~~----~~----~~l~-ak~Iv-e~ANn~~t~~-ea~~~L~~rG------I~~iPD~l 151 (230)
T d1leha1 99 IFAPCALGA----------VLNDF----TI----PQLK-AKVIA-GSADNQLKDP-RHGKYLHELG------IVYAPDYV 151 (230)
T ss_dssp EEEECSCSC----------CBSTT----HH----HHCC-CSEEC-CSCSCCBSSH-HHHHHHHHHT------CEECCHHH
T ss_pred Eeccccccc----------ccChH----Hh----hccC-ccEEE-ecccCCCCCc-hHHHHHHhhC------cEEEeehh
Confidence 999885321 22211 12 2233 24454 454 677554 3456677664 46888875
Q ss_pred c
Q 011650 160 A 160 (480)
Q Consensus 160 ~ 160 (480)
.
T Consensus 152 a 152 (230)
T d1leha1 152 I 152 (230)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.38 E-value=0.006 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~ 36 (480)
|+|+|||.|..|+.+|..|+++ | ++|+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCC
Confidence 6999999999999999999998 9 5999999865
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.37 E-value=0.0067 Score=48.73 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|.-+|..|++. |++|+++++++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc--cceEEEEeccc
Confidence 4799999999999999999998 99999999864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.37 E-value=0.0082 Score=48.30 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|+-+|..|++. |++|+++++.+
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILD 63 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHhhcc--ceEEEEEEecC
Confidence 4799999999999999999998 99999999864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.35 E-value=0.018 Score=48.15 Aligned_cols=107 Identities=12% Similarity=0.073 Sum_probs=72.9
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+++|+. .....+++.|.+.|..|.++|..-.........+ .. .+
T Consensus 2 kIg~IGlG----------~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~-----------------------~~-~~ 47 (156)
T d2cvza2 2 KVAFIGLG----------AMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG-----------------------SE-AV 47 (156)
T ss_dssp CEEEECCS----------TTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHC-----------------------CE-EC
T ss_pred eEEEEeHH----------HHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcC-----------------------Cc-cc
Confidence 79999984 4899999999999999987776543333332221 11 23
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
..+.+.++|.+++....++--..-...+...+.+..+++|+...-.. +.+++.|++|....
T Consensus 48 ~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldap 114 (156)
T d2cvza2 48 PLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP 114 (156)
T ss_dssp CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC
T ss_pred ccccccceeEEEecccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecc
Confidence 34566788998888777543223345677777788899999887653 34446688887653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.34 E-value=0.0068 Score=48.75 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=29.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+++|||.|++|+-+|..|++. |.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhc--CCeEEEEEec
Confidence 3699999999999999999998 9999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.32 E-value=0.024 Score=47.48 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=34.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+..+... |.+|++.+.++++.+.+++
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred EEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh
Confidence 689999999999766665555 8999999999999998876
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0084 Score=48.33 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|+-+|..|++. |.+|+++++++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~--G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC--CcEEEEEeecc
Confidence 4799999999999999999998 99999999864
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.22 E-value=0.0099 Score=47.49 Aligned_cols=33 Identities=33% Similarity=0.305 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|+-+|..|++. |.+|+++.+.+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEEeec
Confidence 4799999999999999999998 99999998764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.03 E-value=0.0073 Score=53.24 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=29.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~ 36 (480)
.||+|||.|.-|++.|..|+++ |+ +|++++.++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA--GITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCC
Confidence 3799999999999999999998 85 799999753
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.03 E-value=0.01 Score=46.99 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.++.|||.|++|.-+|..|++. |++|+++++.+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARE 54 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc--ccceEEEeeec
Confidence 4799999999999999999998 99999998864
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.03 E-value=0.043 Score=44.02 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=48.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC--CCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPI--YEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~--~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
.|-|+|.|.+|..++..| + +++|.++|.++++++.+.....++ .++...+.+++ .-+..|+
T Consensus 2 HivI~G~g~~g~~l~~~L--~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~-------------a~i~~A~ 64 (129)
T d2fy8a1 2 HVVICGWSESTLECLREL--R--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-------------ANVRGAR 64 (129)
T ss_dssp CEEEESCCHHHHHHHHTS--C--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHH-------------TTCTTCS
T ss_pred EEEEECCCHHHHHHHHHH--c--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHH-------------hhhhcCc
Confidence 478999999999999988 3 578999999999999887643222 23322332221 1156889
Q ss_pred EEEEEccC
Q 011650 81 IVFVSVNT 88 (480)
Q Consensus 81 vVii~Vpt 88 (480)
.++++.+.
T Consensus 65 ~vi~~~~~ 72 (129)
T d2fy8a1 65 AVIVNLES 72 (129)
T ss_dssp EEEECCSS
T ss_pred EEEEeccc
Confidence 99998653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.03 E-value=0.033 Score=47.39 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=35.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|-+|+..++.+... | .+|++.|+++++.+..++
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~--G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceeeccCChHHHHHHHHH
Confidence 689999999999988887776 5 589999999999988776
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.02 E-value=0.011 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|.-+|..|++. |.+|+++++.+
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~--g~~Vtvie~~~ 68 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAA 68 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhh--Ccceeeeeecc
Confidence 4799999999999999999998 99999999864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.01 E-value=0.089 Score=44.46 Aligned_cols=117 Identities=9% Similarity=0.141 Sum_probs=75.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec-
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS- 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 404 (480)
||+|+|+.- ....+++.|.++|++|.+||+.-++.+.....+ +.. ..........
T Consensus 3 kIGvIGlG~----------MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~-----~~~---------~~~~~~~~~~~ 58 (178)
T d1pgja2 3 DVGVVGLGV----------MGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN-----ASA---------PFAGNLKAFET 58 (178)
T ss_dssp SEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-----TTS---------TTGGGEEECSC
T ss_pred EEEEEeehH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-----Ccc---------ccccchhhhhh
Confidence 589999854 788999999999999999998544432111111 100 0112222222
Q ss_pred --ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011650 405 --DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSIG 466 (480)
Q Consensus 405 --~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG 466 (480)
.....+..++.+.+.........-....+...+.+..+++|....... +.+.+.++.|..-.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldap 128 (178)
T d1pgja2 59 MEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG 128 (178)
T ss_dssp HHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEeccc
Confidence 234455678888888877665544456677777777799999887654 23456788887653
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.00 E-value=0.034 Score=45.91 Aligned_cols=82 Identities=13% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCCEEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 323 SGKKIAILG-FAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
.-+||+|+| +.- ..-.+++.|.++|++|.+||.....
T Consensus 8 ~~~kI~iIGg~G~----------mG~~la~~L~~~G~~V~~~d~~~~~-------------------------------- 45 (152)
T d2pv7a2 8 DIHKIVIVGGYGK----------LGGLFARYLRASGYPISILDREDWA-------------------------------- 45 (152)
T ss_dssp TCCCEEEETTTSH----------HHHHHHHHHHTTTCCEEEECTTCGG--------------------------------
T ss_pred CCCeEEEEcCCCH----------HHHHHHHHHHHcCCCcEeccccccc--------------------------------
Confidence 346999999 743 7888999999999999999975432
Q ss_pred EecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCC
Q 011650 402 VASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNIL 450 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~ 450 (480)
..++.++++|.++++++=..... -..++...+++..+|+|...+=
T Consensus 46 ---~~~~~~~~~~~v~~~~~~~~~~~-v~~~~~~~~~~~~iiiD~~Svk 90 (152)
T d2pv7a2 46 ---VAESILANADVVIVSVPINLTLE-TIERLKPYLTENMLLADLTSVK 90 (152)
T ss_dssp ---GHHHHHTTCSEEEECSCGGGHHH-HHHHHGGGCCTTSEEEECCSCC
T ss_pred ---ccchhhhhccccccccchhhhee-eeecccccccCCceEEEecccC
Confidence 22455689999999988776554 3446667777778999998754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.00 E-value=0.0078 Score=48.44 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.++.|||.|++|+-+|..|++. |.+|+++.+++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~--G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEEccchHHHHHHHHHHhc--CCeEEEEEEcc
Confidence 3799999999999999999998 99999998865
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.99 E-value=0.056 Score=46.53 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=49.9
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-e---cCHHHHhh
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-S---TDVEKHVR 77 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t---~d~~~a~~ 77 (480)
+|-|.| .|.+|..+|..|++. |.+|++++|++++.+++.+. +.......-... . ++.++++.
T Consensus 25 ~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 25 KAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADS-----------VNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH-----------HHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHH-----------HHhccchhhhhhhcccHHHHHHHhc
Confidence 566777 799999999999998 99999999999988876541 111100011111 1 23445577
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
++|++|-|.+-
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 99999887653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.98 E-value=0.03 Score=51.17 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=30.2
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||.|.| .|++|..++..|.++ ||+|++++|++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~ 37 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPE 37 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCC
Confidence 6899999 599999999999998 99999999864
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0084 Score=44.15 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|++|+|+|.|-.|.-++..-.+- |++|.++|.++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCC
Confidence 68899999999999999887777 99999999864
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.041 Score=47.12 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=49.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe--cC---HHHHh
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS--TD---VEKHV 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t--~d---~~~a~ 76 (480)
.+|.|+|+|-+|.+++..|.+.+ ..++++++|++++.+++.+- .+.+-.. .......+ .+ ..+.+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 88 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAF--------AQRVNEN-TDCVVTVTDLADQQAFAEAL 88 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHH--------HHHHHHH-SSCEEEEEETTCHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHH--------HHHHHhh-cCcceEeeecccccchhhhh
Confidence 37999999999999999999872 34899999998766654320 0000000 01111221 12 33446
Q ss_pred hcCCEEEEEccCC
Q 011650 77 REANIVFVSVNTP 89 (480)
Q Consensus 77 ~~aDvVii~Vptp 89 (480)
..+|+||-|+|..
T Consensus 89 ~~~diiIN~Tp~G 101 (182)
T d1vi2a1 89 ASADILTNGTKVG 101 (182)
T ss_dssp HTCSEEEECSSTT
T ss_pred cccceeccccCCc
Confidence 7899999998753
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.87 E-value=0.082 Score=43.85 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCCCEEEEEeeccCCCCCcccCC-hHHHHHHHHHhCCCeEEEE-CCCC-Chh-HHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 322 VSGKKIAILGFAFKKDTGDTRET-PAIDVCKGLMGDKARLSIY-DPQV-PQE-HIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g~~V~~~-DP~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
++|.+|+++| |+++| -+..++..|..-|+++.+. -|.. .+. ..... .-
T Consensus 1 l~gl~i~~vG--------D~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~--------------------~~ 52 (153)
T d1pg5a2 1 IDGLVFALLG--------DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDE--------------------LN 52 (153)
T ss_dssp STTCEEEEEE--------CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTT--------------------CC
T ss_pred CCCCEEEEEC--------CCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhccc--------------------CC
Confidence 4789999999 99998 5888999999999986543 3322 211 11111 11
Q ss_pred CceEEecChhhhcccCcEEEEe
Q 011650 398 NQVIVASDAYEATKDSHGVCIL 419 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~ 419 (480)
..+++.++++++++++|+|...
T Consensus 53 ~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 53 YPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp SCEEEESCGGGTGGGCSEEEEE
T ss_pred CeEEEEeCHHHHhhcCCeEEEe
Confidence 3578889999999999976653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.009 Score=55.69 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=31.3
Q ss_pred CceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.+|.|||+|..|+++|..|+++ |++|++++.+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 67899999999999999999998 99999999753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.023 Score=47.88 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=33.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... |.+++++|.++++.+.+++
T Consensus 33 ~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 33 KVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred EEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc
Confidence 689999999999766655555 8999999999998877665
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.76 E-value=0.039 Score=48.09 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=54.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCC-------CCcC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSP-------STIN 398 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 398 (480)
||+|+|+.| -.+.++-.|.++|.+|.+||..- +.+. .+..... |+ .+... ....
T Consensus 2 kI~ViGlG~----------vGl~~a~~la~~g~~V~g~D~n~--~~i~-~ln~g~~----p~--~e~~~~~~l~~~~~~~ 62 (202)
T d1mv8a2 2 RISIFGLGY----------VGAVCAGCLSARGHEVIGVDVSS--TKID-LINQGKS----PI--VEPGLEALLQQGRQTG 62 (202)
T ss_dssp EEEEECCST----------THHHHHHHHHHTTCEEEEECSCH--HHHH-HHHTTCC----SS--CCTTHHHHHHHHHHTT
T ss_pred EEEEECCCH----------hHHHHHHHHHhCCCcEEEEeCCH--HHHH-HhcccCC----cc--cchhhhhhhhhhhccc
Confidence 699999999 89999999999999999999742 2221 1110000 00 00000 0113
Q ss_pred ceEEecChhhhcccCcEEEEeecCcc
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
.+...++..++++++|+++|+++-|.
T Consensus 63 ~~~~~~~~~~~i~~~d~i~i~VpTP~ 88 (202)
T d1mv8a2 63 RLSGTTDFKKAVLDSDVSFICVGTPS 88 (202)
T ss_dssp CEEEESCHHHHHHTCSEEEECCCCCB
T ss_pred ccccCCCHHHHHhhCCEEEEecCccc
Confidence 46778899999999999999988764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.75 E-value=0.13 Score=46.21 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=34.6
Q ss_pred ceEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+||++| | .+-+|..+|..|++. |++|++.|+++++.+++.
T Consensus 1 KKValITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~ 42 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVA 42 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 588877 4 577999999999999 999999999998877655
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.75 E-value=0.044 Score=43.38 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=63.5
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+|||+ |..|..+...|.+. ||+|+.+..+.+.+ .++.+..++.+.-.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~--g~~V~pVnP~~~~i------------------------~G~~~y~sl~~lp~ 55 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK 55 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC--CCEEEEEccccccc------------------------cCccccccchhccc
Confidence 57999994 68899999999998 99988876542211 23566677777445
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
..|++++|+|. +.+.+++++....- ...+++ .+ .+..+++.+.+++.+
T Consensus 56 ~~D~vvi~vp~---------------~~~~~~l~~~~~~g-~k~v~~-~~---g~~~~~~~~~a~~~g 103 (116)
T d1y81a1 56 DVDVIVFVVPP---------------KVGLQVAKEAVEAG-FKKLWF-QP---GAESEEIRRFLEKAG 103 (116)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHHTT-CCEEEE-CT---TSCCHHHHHHHHHHT
T ss_pred cceEEEEEeCH---------------HHHHHHHHHHHhcC-CceEEe-cc---chhhHHHHHHHHHcC
Confidence 67999999874 23456666655432 223333 22 223455667776654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.68 E-value=0.015 Score=46.23 Aligned_cols=33 Identities=3% Similarity=-0.014 Sum_probs=30.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~ 55 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTE 55 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHhc--chhheEeeccc
Confidence 4799999999999999999998 99999999864
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.12 Score=43.61 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=61.2
Q ss_pred HhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCC
Q 011650 317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPST 396 (480)
Q Consensus 317 ~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (480)
..+-++++++|.|+|=+- --..+|+..|.++|+.|.+.+-.-.
T Consensus 32 ~~~i~l~Gk~vvVIGrS~---------iVGrPLa~lL~~~gatVt~~~~~t~---------------------------- 74 (170)
T d1a4ia1 32 ETGVPIAGRHAVVVGRSK---------IVGAPMHDLLLWNNATVTTCHSKTA---------------------------- 74 (170)
T ss_dssp TTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTCS----------------------------
T ss_pred HhCcccccceEEEEecCC---------ccchHHHHHHHhccCceEEEecccc----------------------------
Confidence 345578999999999432 3678899999999999999876433
Q ss_pred cCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 397 INQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 397 ~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
++.+-++.||.+|.++..+.|-..+ ..++..+|||.-
T Consensus 75 --------~l~~~~~~aDivi~a~G~~~~i~~~------~vk~g~iviDvg 111 (170)
T d1a4ia1 75 --------HLDEEVNKGDILVVATGQPEMVKGE------WIKPGAIVIDCG 111 (170)
T ss_dssp --------SHHHHHTTCSEEEECCCCTTCBCGG------GSCTTCEEEECC
T ss_pred --------cHHHHHhhccchhhccccccccccc------cccCCCeEeccC
Confidence 3345578999999999999985543 334556999985
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.62 E-value=0.091 Score=44.55 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=34.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
.|.|+|+|-+|+..++.+... | .+|+++|+++++.+..++
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCchhHHHHHHHHHc--CCceEEEecCcHHHHHHHHh
Confidence 589999999999988877776 6 589999999999987775
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.57 E-value=0.13 Score=43.48 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..++.+... |. +|++.|+++++.+..++
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHh--CCceeeeeccchHHHHHHHH
Confidence 689999999999877776665 65 78899999999887776
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.014 Score=55.06 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=29.1
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|||.|+| .|++|..++..|.++ ||+|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~--g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence 8999997 699999999999998 999999986
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.013 Score=51.16 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|.|||.|.-|+..|..|+++ |++|.+++.++
T Consensus 8 viViGaG~~Gl~~A~~La~~--G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD--GKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCCEEEEcCCC
Confidence 89999999999999999998 99999999863
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.47 E-value=0.12 Score=41.98 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=24.0
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEE-EeC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDI 34 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~ 34 (480)
||+|+| .|.||..++..+.+. +++++.+ +|+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~~~d~ 33 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSAELDA 33 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-TTSEEEEEECT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 799999 599999998877764 4777654 554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.46 E-value=0.013 Score=54.01 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=29.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~ 36 (480)
.+|.|||.|.+|+++|..|++. | ++|+++|++.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTR--GWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCCC
Confidence 4799999999999999999998 7 4799999863
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.44 E-value=0.013 Score=50.11 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=51.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
++|.|+|+|.++.+++..|.+. | +|++++|+.++.+.+.+.......... . ..+.+ .++......+|+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~~~ka~~l~~~~~~~~~~~~---~-----~~~~~-~~~~~~~~~~dl 86 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEIAEKLNKKF---G-----EEVKF-SGLDVDLDGVDI 86 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHHHHHHTCCH---H-----HHEEE-ECTTCCCTTCCE
T ss_pred CEEEEECCcHHHHHHHHHHccc--c-ceeeehhhhhHHHHHHHHHHHhhchhh---h-----hhhhh-hhhhhccchhhh
Confidence 4799999999999999888764 5 899999999998887641100000000 0 01222 334444678999
Q ss_pred EEEEccCCC
Q 011650 82 VFVSVNTPT 90 (480)
Q Consensus 82 Vii~Vptp~ 90 (480)
+|-|+|.+.
T Consensus 87 iIn~tp~g~ 95 (177)
T d1nvta1 87 IINATPIGM 95 (177)
T ss_dssp EEECSCTTC
T ss_pred hccCCcccc
Confidence 999988654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.43 E-value=0.018 Score=48.23 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=30.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||.|||.|+.|..+|..|.+.++..+|++++.++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 58999999999999999999884446899998765
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.42 E-value=0.045 Score=46.18 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=34.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g 45 (480)
+|.|+|+|.+|+..+..+...+ +..|++.|.++++.+.+++.
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ 76 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL 76 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT
T ss_pred EEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc
Confidence 5899999999998777776652 36789999999999988763
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.016 Score=53.08 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=29.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.||+|||.|.-|++.|..|+++ |++|++++.+
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence 3799999999999999999998 9999999875
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.39 E-value=0.023 Score=49.22 Aligned_cols=85 Identities=9% Similarity=0.115 Sum_probs=59.6
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+||+|+|.. +-+..++..|.+.|.+|.+|+.. ++.. ..+...+.. | +..| .-...+++.+.+
T Consensus 8 ~KI~ViGaG----------~wGtAlA~~La~~g~~V~l~~r~--~~~~-~~i~~~~~n---~-~yl~-~~~l~~~i~~t~ 69 (189)
T d1n1ea2 8 NKAVVFGSG----------AFGTALAMVLSKKCREVCVWHMN--EEEV-RLVNEKREN---V-LFLK-GVQLASNITFTS 69 (189)
T ss_dssp EEEEEECCS----------HHHHHHHHHHHTTEEEEEEECSC--HHHH-HHHHHHTBC---T-TTST-TCBCCTTEEEES
T ss_pred ceEEEECCC----------HHHHHHHHHHHHcCCeEEEEEec--HHHH-HHHhhcccc---c-cccc-ccccccccccch
Confidence 589999964 58889999999999999999863 3322 222211100 0 0001 112346788899
Q ss_pred ChhhhcccCcEEEEeecCccccc
Q 011650 405 DAYEATKDSHGVCILTEWDEFKN 427 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~ 427 (480)
+++++++++|.|+++++...+++
T Consensus 70 ~l~~a~~~ad~iiiavPs~~~~~ 92 (189)
T d1n1ea2 70 DVEKAYNGAEIILFVIPTQFLRG 92 (189)
T ss_dssp CHHHHHTTCSCEEECSCHHHHHH
T ss_pred hhhhccCCCCEEEEcCcHHHHHH
Confidence 99999999999999999988776
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.38 E-value=0.17 Score=45.38 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=34.7
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
||++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 3 KValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 44 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLK 44 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 78877 5678999999999999 9999999999988776553
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.37 E-value=0.013 Score=49.06 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.1
Q ss_pred eEEEECC-ChhHHHHHHHHHHc
Q 011650 3 KICCIGA-GYVGGPTMAVIALK 23 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~ 23 (480)
||||||+ ||+|.-+...|+++
T Consensus 3 kVaIvGATGyvG~eLirlL~~H 24 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEES 24 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTC
T ss_pred EEEEECCCcHHHHHHHHHHHcC
Confidence 8999997 99999999988875
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.35 E-value=0.019 Score=46.26 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.++.|||.|++|+-+|..|++. |.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeec
Confidence 3799999999999999999998 99999998754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.32 E-value=0.081 Score=44.62 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=35.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|-+|+..+..++.. .+.+|++.|+++++.+..++
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHH
Confidence 689999999999988888876 24799999999999888776
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.29 E-value=0.053 Score=45.54 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=34.3
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+ |.+|...+..+... | .+|+++|+++++.+.+++
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHH
T ss_pred EEEEEeccccceeeeeeccccc--ccccccccccchhhHHHHHH
Confidence 6899995 99999888777766 5 699999999999988876
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.25 Score=44.04 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=57.4
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCC
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREAN 80 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (480)
|+++| | .+-+|..+|..|+++ |.+|+++|+++++++++.+. +.+ .+..
T Consensus 8 kv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~--------------------------~~~--~~~~ 57 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAK--------------------------CKG--LGAK 57 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH--------------------------HHH--TTCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH--------------------------HHh--cCCc
Confidence 45666 5 466999999999999 99999999999988776641 011 2334
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+..+... -.|.+.+++.++.+.+....=.++|+...+
T Consensus 58 ~~~~~~D------------vs~~~~v~~~~~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 58 VHTFVVD------------CSNREDIYSSAKKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp EEEEECC------------TTCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred EEEEEee------------CCCHHHHHHHHHHHHHHcCCCceeEeeccc
Confidence 4444421 124456777888887766666666666543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.17 E-value=0.16 Score=39.99 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=70.7
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
++|+|+|+|=+ .++++..+.+.|.+.|++|..-.|.... + .++....
T Consensus 2 KsIAVvGaS~~------~~k~g~~v~~~L~~~g~~V~pVnP~~~~--i-------------------------~G~~~y~ 48 (116)
T d1y81a1 2 RKIALVGASKN------PAKYGNIILKDLLSKGFEVLPVNPNYDE--I-------------------------EGLKCYR 48 (116)
T ss_dssp CEEEEETCCSC------TTSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEECBS
T ss_pred cEEEEEcccCC------CCCcHHHHHHHHHHCCCEEEEEcccccc--c-------------------------cCccccc
Confidence 68999998644 4789999999999999998888886432 2 2355566
Q ss_pred ChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011650 405 DAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE---KLRKIGFIVYS 464 (480)
Q Consensus 405 ~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~ 464 (480)
++.+.=+..|++++.++.+.--+.- +++.+. .-+ .++--.+..+++ .+++.|+++.|
T Consensus 49 sl~~lp~~~D~vvi~vp~~~~~~~l-~~~~~~-g~k-~v~~~~g~~~~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 49 SVRELPKDVDVIVFVVPPKVGLQVA-KEAVEA-GFK-KLWFQPGAESEEIRRFLEKAGVEYSF 108 (116)
T ss_dssp SGGGSCTTCCEEEECSCHHHHHHHH-HHHHHT-TCC-EEEECTTSCCHHHHHHHHHHTCEEEC
T ss_pred cchhccccceEEEEEeCHHHHHHHH-HHHHhc-CCc-eEEeccchhhHHHHHHHHHcCCEEEc
Confidence 7777666789999998877644422 233332 333 455556667653 44567888743
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=0.14 Score=42.95 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=60.8
Q ss_pred HHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCC
Q 011650 316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 316 ~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (480)
+..+-++++++|.|+|=+- --..+|+..|.++|+.|.+.+-.-
T Consensus 29 ~~y~i~l~GK~v~VIGrS~---------~VG~Pla~lL~~~gatVt~~h~~t---------------------------- 71 (166)
T d1b0aa1 29 ERYNIDTFGLNAVVIGASN---------IVGRPMSMELLLAGCTTTVTHRFT---------------------------- 71 (166)
T ss_dssp HHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHTTTCEEEEECSSC----------------------------
T ss_pred HHcCcccccceEEEEeccc---------cccHHHHHHHHHhhcccccccccc----------------------------
Confidence 3345578999999999533 467889999999999999876432
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcC
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 447 (480)
.++.+.++.||.+|.++..+.|-..+ ..++..+|||.-
T Consensus 72 --------~~l~~~~~~ADivI~a~G~p~~i~~~------~vk~g~vvIDvG 109 (166)
T d1b0aa1 72 --------KNLRHHVENADLLIVAVGKPGFIPGD------WIKEGAIVIDVG 109 (166)
T ss_dssp --------SCHHHHHHHCSEEEECSCCTTCBCTT------TSCTTCEEEECC
T ss_pred --------chhHHHHhhhhHhhhhccCccccccc------ccCCCcEEEecC
Confidence 23455678999999999999885533 234556999963
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.024 Score=44.66 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.||+|+|.|-.|.-+|....+. |++|+++|.+++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCCC
Confidence 4899999999999999988777 999999998754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.04 Score=51.57 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=32.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~ 43 (480)
|||-|.| +|++|..++..|.++ | ++|+++|+.......+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~--g~~~V~~ld~~~~~~~~~~ 42 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRFL 42 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGGT
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCCCcchhhhc
Confidence 7999997 599999999999988 7 48999998765544443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.11 Score=44.03 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred ceEEEECCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHHHhcCCCEE-Ee-cCHHHHhh
Q 011650 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQ-LPIYEPGLEEVVKQCRGKNLF-FS-TDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~~~~~~~~~l~-~t-~d~~~a~~ 77 (480)
++|.|||-+ .+|.|+|..|+.+ |..|+.++.+... ....+. ..+...+ ...+. .+ +.+++...
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~--gaTVt~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~lk~~~~ 96 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQ--KFTRGESLKLNKHH---------VEDLGEYSEDLLKKCSL 96 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEE--EEESCCCSSCCCCE---------EEEEEECCHHHHHHHHH
T ss_pred CEEEEECCccccHHHHHHHHHHC--CCEEEEecccccc--ccccccceeeeeec---------cccccccchhHHhhccc
Confidence 479999965 6799999999998 8999998865211 011110 0000000 00111 11 12556677
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
.+|++|.++|.|... .. .+++++|++|++-+
T Consensus 97 ~aDIvIsavG~p~~~--------i~-----------~d~ik~GavvIDvG 127 (171)
T d1edza1 97 DSDVVITGVPSENYK--------FP-----------TEYIKEGAVCINFA 127 (171)
T ss_dssp HCSEEEECCCCTTCC--------BC-----------TTTSCTTEEEEECS
T ss_pred cCCEEEEccCCCccc--------cC-----------hhhcccCceEeecc
Confidence 899999999876320 00 13578899998754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.023 Score=47.96 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=34.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|+|+|.+|+..+..+... |.+|+++|+++++.+..++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK 69 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc
Confidence 3789999999999876655555 8999999999999888775
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.06 E-value=0.051 Score=46.37 Aligned_cols=108 Identities=10% Similarity=0.144 Sum_probs=71.0
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
+|+|+|. .+-+..++..|...|.+|.+|.-..+++.+ ....... ..++.+ .......+...++
T Consensus 2 kI~ViGa----------G~~GtalA~~la~~g~~V~l~~r~~~~~~~-~~i~~~~-----~~~~~~-~~~~~~~i~~~~~ 64 (180)
T d1txga2 2 IVSILGA----------GAMGSALSVPLVDNGNEVRIWGTEFDTEIL-KSISAGR-----EHPRLG-VKLNGVEIFWPEQ 64 (180)
T ss_dssp EEEEESC----------CHHHHHHHHHHHHHCCEEEEECCGGGHHHH-HHHHTTC-----CBTTTT-BCCCSEEEECGGG
T ss_pred EEEEECC----------CHHHHHHHHHHHHCCCEEEEEEecccHHHH-HHHhhhh-----hhhhhc-chhcccccccccc
Confidence 7899996 458889999999999999999643333322 2221100 001110 0111234556788
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
+.++++++|+|+++++...+++. .+++....++..+|+-++++.+
T Consensus 65 ~~~~~~~ad~Ii~avps~~~~~~-~~~l~~~l~~~~ii~~tkg~~~ 109 (180)
T d1txga2 65 LEKCLENAEVVLLGVSTDGVLPV-MSRILPYLKDQYIVLISKGLID 109 (180)
T ss_dssp HHHHHTTCSEEEECSCGGGHHHH-HHHHTTTCCSCEEEECCCSEEE
T ss_pred HHHHHhccchhhcccchhhhHHH-HHhhccccccceecccccCccc
Confidence 99999999999999999888763 5566666666667777777653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.05 E-value=0.23 Score=45.29 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=34.6
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++|| |.|.+|..+|..|++. |++|++.|++.++.++..
T Consensus 26 K~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 77877 6899999999999999 999999999998876654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.79 E-value=0.017 Score=52.39 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=30.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||-|.|. |++|..++..|.++ ||+|+++|++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~ 34 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQ 34 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeech
Confidence 89999996 99999999999988 9999999985
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.73 E-value=0.024 Score=50.47 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=31.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.+|.|||.|.-|+..|..|++. |++|++++.+.+
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~ 83 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEK 83 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred ceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccc
Confidence 4799999999999999999998 999999998764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.21 Score=44.85 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=34.1
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+.+|..+|..|++. |++|+++++++++++++.+
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55655 5689999999999999 9999999999988877653
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.60 E-value=0.019 Score=50.63 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~ 37 (480)
.||+|||+|.-|++.|..|+++ | ++|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~--G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKA--ADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH--HHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHc--CCccccCCCceEEEecCCC
Confidence 4899999999999999999998 6 57999998764
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.57 E-value=0.032 Score=45.42 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=60.0
Q ss_pred ceEEEECCCh----------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecC
Q 011650 2 VKICCIGAGY----------VGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTD 71 (480)
Q Consensus 2 mkI~VIGlG~----------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (480)
.||+|+|+-+ -...++..|..+ |.+|.+||..-+..+..+ ...+.........+....++
T Consensus 14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~--g~~V~~~DP~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1mv8a3 14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK--GYELRIFDRNVEYARVHG--------ANKEYIESKIPHVSSLLVSD 83 (136)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT--TCEEEEECHHHHHHTTSS--------SCHHHHHHTSHHHHTTBCSC
T ss_pred CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh--hccccccCCCCCHHHHhh--------hhhhhhhhccccccceeehh
Confidence 4799999865 567888999888 999999996322211000 00100000000011235678
Q ss_pred HHHHhhcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 72 VEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
+.+++.++|+||++++-+ + ++.+...+.++.+|++.-.+
T Consensus 84 ~~e~i~~~D~ivi~t~h~------------~-------f~~l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 84 LDEVVASSDVLVLGNGDE------------L-------FVDLVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp HHHHHHHCSEEEECSCCG------------G-------GHHHHHSCCTTCEEEESSSC
T ss_pred hhhhhhhceEEEEEeCCH------------H-------HHHHHHHhcCCCEEEECCCC
Confidence 999999999999997632 1 12344556678888885433
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.55 E-value=0.25 Score=44.38 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=33.0
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|++|| | .+-+|..+|..|++. |++|++.|++++++++..
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~ 45 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASK 45 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 55666 4 568999999999999 999999999998877654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.48 E-value=0.028 Score=51.03 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|.+|+++|..|+++ |++|+++|..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~--G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC
Confidence 489999999999999999998 9999999974
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.46 E-value=0.1 Score=42.54 Aligned_cols=97 Identities=11% Similarity=-0.024 Sum_probs=63.3
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |..|..++..|.+. ||+|+.+......+ .+..+..++++.-.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~--g~~v~pVnP~~~~i------------------------~G~~~~~sl~dlp~ 73 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH--GYDVYPVNPKYEEV------------------------LGRKCYPSVLDIPD 73 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGCSS
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC--CCEEEEECCccccc------------------------CCCcccccccccCc
Confidence 46999996 57999999999998 99988887542111 23556677777445
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|++++++|. +.+.++++++... ....+++. +.+..+++.+.+++.
T Consensus 74 ~iD~v~i~vp~---------------~~~~~~~~e~~~~-g~k~v~~~----~G~~~ee~~~~a~~~ 120 (139)
T d2d59a1 74 KIEVVDLFVKP---------------KLTMEYVEQAIKK-GAKVVWFQ----YNTYNREASKKADEA 120 (139)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHH-TCSEEEEC----TTCCCHHHHHHHHHT
T ss_pred cceEEEEEeCH---------------HHHHHHHHHHHHh-CCCEEEEe----ccccCHHHHHHHHHC
Confidence 78999999873 3456666666654 22333332 223345566665554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.36 E-value=0.24 Score=44.34 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=34.0
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
||++| | .+-+|..+|..|++. |++|+++|++++.++++.+
T Consensus 11 KvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 67777 5 578999999999998 9999999999988776553
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.029 Score=51.89 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|+|||.|.-|++.|..|+++ |++|++++.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS--GLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence 89999999999999999998 99999999753
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.10 E-value=0.36 Score=43.08 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=32.3
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++.++..
T Consensus 6 K~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~ 46 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAA 46 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 45555 4 578999999999999 999999999998876544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.05 E-value=0.36 Score=40.23 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=35.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|-+|+..+..++..+ +.+|++.|+++++.+..++
T Consensus 31 ~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 31 TCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred EEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH
Confidence 6899999999998888877762 5689999999999988776
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.00 E-value=0.11 Score=43.73 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
.+..+|.|+|.. --.+.-++...+.|++|.+||-.....+ +...++ ..+
T Consensus 30 v~pa~V~ViGaG----------vaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~--------------------~~~ 79 (168)
T d1pjca1 30 VKPGKVVILGGG----------VVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG--------------------SRV 79 (168)
T ss_dssp BCCCEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------------------GGS
T ss_pred CCCcEEEEECCC----------hHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc--------------------ccc
Confidence 467899999963 4788888899999999999997544322 222221 111
Q ss_pred EE----ecChhhhcccCcEEEEeecCccccc--ccHHHHHhhcCCCCEEEEcC
Q 011650 401 IV----ASDAYEATKDSHGVCILTEWDEFKN--LDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 401 ~~----~~~~~~a~~~~d~~vi~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~ 447 (480)
.. ...++++++++|.||=..-+|--+. +-.++..+.|++..+|||..
T Consensus 80 ~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 80 ELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp EEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred eeehhhhhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence 11 2356788999999998888876554 34567788999999999973
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.90 E-value=0.034 Score=51.71 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=30.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.|+|||+|.-|+.+|..|.+. |++|+++|.+++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLREL--GRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhC--CCCEEEEEcCCC
Confidence 699999999999999999998 999999998764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.85 E-value=0.18 Score=41.99 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCC
Q 011650 310 FVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHL 389 (480)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ 389 (480)
+++-+++..+.-+.+++|.|+|-.+ -.--+++.|...|+.|.+++--- --.++.
T Consensus 9 ~~d~i~r~t~~~laGk~vvV~GYG~----------vGrG~A~~~rg~Ga~V~V~E~DP-i~alqA--------------- 62 (163)
T d1v8ba1 9 LPDGLMRATDFLISGKIVVICGYGD----------VGKGCASSMKGLGARVYITEIDP-ICAIQA--------------- 62 (163)
T ss_dssp HHHHHHHHHCCCCTTSEEEEECCSH----------HHHHHHHHHHHHTCEEEEECSCH-HHHHHH---------------
T ss_pred HHHHHHHHhCceecCCEEEEecccc----------cchhHHHHHHhCCCEEEEEecCc-hhhHHH---------------
Confidence 3445566666678999999999765 78889999999999999986421 111222
Q ss_pred CCCCCCCcCceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 390 QPTSPSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
.++++++ .++++|++.+|.+|-+|.++.. ++.+.+ +.|+..+ |+=.-+-||.
T Consensus 63 ------~mdGf~v-~~~~~a~~~aDi~vTaTGn~~v--I~~~h~-~~MKdga-Il~N~GHfd~ 114 (163)
T d1v8ba1 63 ------VMEGFNV-VTLDEIVDKGDFFITCTGNVDV--IKLEHL-LKMKNNA-VVGNIGHFDD 114 (163)
T ss_dssp ------HTTTCEE-CCHHHHTTTCSEEEECCSSSSS--BCHHHH-TTCCTTC-EEEECSSTTT
T ss_pred ------HhcCCcc-CchhHccccCcEEEEcCCCCcc--ccHHHH-HHhhCCe-EEEeccccch
Confidence 1345555 5789999999999999999863 455554 6788774 5555566653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.76 E-value=0.026 Score=45.52 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=28.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVPRI 39 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v 39 (480)
+|.|+|+|.+|..++..+... .++++++ +|-++++.
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k~ 41 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEKV 41 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTT
T ss_pred eEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHhc
Confidence 799999999999998876543 3788776 68887654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.26 Score=44.06 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=33.7
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |.+|++.|+++++.++..+
T Consensus 4 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 45 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKA 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 4 588999999999999 9999999999988776553
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.70 E-value=0.51 Score=42.22 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=33.2
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|++++.++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEA 47 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 577999999999999 9999999999988776553
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.62 E-value=0.6 Score=41.74 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=32.9
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.
T Consensus 9 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~ 49 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCL 49 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 45555 5 577999999999999 999999999998887655
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=92.62 E-value=0.51 Score=41.99 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=34.1
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++.+++.+
T Consensus 7 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56766 5788999999999999 9999999999988776553
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.17 Score=46.62 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=32.9
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++.++..
T Consensus 13 KvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~ 53 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAA 53 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 55655 4678999999999999 999999999998877654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.62 E-value=0.069 Score=42.85 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=64.2
Q ss_pred CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE--
Q 011650 325 KKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV-- 402 (480)
Q Consensus 325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (480)
|++.|+|+. .-...+++.|.+.|.+|.+.|+- ++...+ +.. ....+.+
T Consensus 1 k~~iIiG~G----------~~G~~la~~L~~~g~~vvvid~d--~~~~~~-~~~-----------------~~~~~~~gd 50 (134)
T d2hmva1 1 KQFAVIGLG----------RFGGSIVKELHRMGHEVLAVDIN--EEKVNA-YAS-----------------YATHAVIAN 50 (134)
T ss_dssp CCEEEECCS----------HHHHHHHHHHHHTTCCCEEEESC--HHHHHH-TTT-----------------TCSEEEECC
T ss_pred CEEEEECCC----------HHHHHHHHHHHHCCCeEEEecCc--HHHHHH-HHH-----------------hCCcceeee
Confidence 467888863 47899999999999999999984 333322 110 0011111
Q ss_pred ---ecChhhh-cccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcEE
Q 011650 403 ---ASDAYEA-TKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIV 462 (480)
Q Consensus 403 ---~~~~~~a-~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y 462 (480)
.+.+.++ ++++|+++++++.++=..+-...+......+.+|.=..+.-..+.++..|..+
T Consensus 51 ~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~ 114 (134)
T d2hmva1 51 ATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADR 114 (134)
T ss_dssp TTCTTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSE
T ss_pred cccchhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCE
Confidence 1234444 77899999988766433333344455555554554444444455556666543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.61 E-value=0.47 Score=42.17 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.7
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++.+++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 5 578999999999999 9999999999988776653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.60 E-value=0.054 Score=51.15 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.8
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|||.|.| .|++|..++..|.++ ||+|+++|+.
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~ 48 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHE--GHYVIASDWK 48 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCC
Confidence 8999997 799999999999998 9999999974
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=92.60 E-value=0.49 Score=42.40 Aligned_cols=111 Identities=9% Similarity=0.039 Sum_probs=67.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHh--hcCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHV--REAN 80 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~aD 80 (480)
+|.=+|||.-.. +..+++. |.+|+++|+++..++..++.. ..+....+ ....|..+.+ ...|
T Consensus 123 ~VLDiGcGsG~l--~i~aa~~--g~~V~gvDis~~av~~A~~na-----------~~n~~~~~-~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 123 KVLDLGTGSGVL--AIAAEKL--GGKALGVDIDPMVLPQAEANA-----------KRNGVRPR-FLEGSLEAALPFGPFD 186 (254)
T ss_dssp EEEEETCTTSHH--HHHHHHT--TCEEEEEESCGGGHHHHHHHH-----------HHTTCCCE-EEESCHHHHGGGCCEE
T ss_pred EEEEcccchhHH--HHHHHhc--CCEEEEEECChHHHHHHHHHH-----------HHcCCcee-EEeccccccccccccc
Confidence 566789997443 4456676 889999999999888766410 00000111 2344555443 3578
Q ss_pred EEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhc
Q 011650 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNS 145 (480)
Q Consensus 81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~ 145 (480)
+|+.... ...+.+.++.+...+++|..++. |.+.....+.+.+.+++.+
T Consensus 187 ~V~ani~---------------~~~l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~G 235 (254)
T d2nxca1 187 LLVANLY---------------AELHAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAG 235 (254)
T ss_dssp EEEEECC---------------HHHHHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTT
T ss_pred hhhhccc---------------cccHHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCC
Confidence 8775432 12356777888899998877665 4343344455666666543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.56 E-value=0.67 Score=41.37 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=32.9
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
++-|.| .+-+|..+|..|+++ |++|++.++++++.+++.
T Consensus 8 ~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~ 47 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECL 47 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 355556 688999999999999 999999999998877654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.06 Score=48.35 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=36.0
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+.+|..+|..|+++ |++|++.|+++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEK 48 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHGGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence 67777 7899999999999999 9999999999998887765
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.49 Score=42.26 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=34.5
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 12 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 53 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVD 53 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 67777 6688999999999998 9999999999988776553
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.43 E-value=0.045 Score=48.57 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.|.|||.|..|+..|..|+++ |++|+++|.++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 389999999999999999998 999999998753
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.58 Score=41.42 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=34.2
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 5 K~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISD 46 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 56777 4 678999999999999 9999999999988776653
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=92.24 E-value=0.11 Score=42.16 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=72.0
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|||+|+|-+ .++++..+++.|.+.|+++..+-|....+++ .+...
T Consensus 12 ~pksIAVVGaS~~------~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i-------------------------~g~~~ 60 (136)
T d1iuka_ 12 QAKTIAVLGAHKD------PSRPAHYVPRYLREQGYRVLPVNPRFQGEEL-------------------------FGEEA 60 (136)
T ss_dssp HCCEEEEETCCSS------TTSHHHHHHHHHHHTTCEEEEECGGGTTSEE-------------------------TTEEC
T ss_pred CCCeEEEEeecCC------CCCchHHHHHHHhcCCCCceEEEecccccee-------------------------eceec
Confidence 4679999998654 4689999999999999999999886443322 23455
Q ss_pred ecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChH---HHhhcCcEEE
Q 011650 403 ASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVE---KLRKIGFIVY 463 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~ 463 (480)
..++.+.-...|.+++.++-..--++ .+++.+. ... .++=..+..+++ .+++.|+++.
T Consensus 61 ~~~l~~i~~~iD~v~v~~p~~~v~~~-v~~~~~~-g~k-~i~~q~G~~~~e~~~~a~~~Gi~vV 121 (136)
T d1iuka_ 61 VASLLDLKEPVDILDVFRPPSALMDH-LPEVLAL-RPG-LVWLQSGIRHPEFEKALKEAGIPVV 121 (136)
T ss_dssp BSSGGGCCSCCSEEEECSCHHHHTTT-HHHHHHH-CCS-CEEECTTCCCHHHHHHHHHTTCCEE
T ss_pred ccchhhccCCCceEEEeccHHHHHHH-HHHHHhh-CCC-eEEEecCccCHHHHHHHHHcCCEEE
Confidence 56777755678999999875443332 2333333 333 444466777764 4446788774
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.01 E-value=0.82 Score=36.85 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=73.1
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
+.++|||+|+|-+ .++++..+++.|.+.|++|..-.|.... + .++..
T Consensus 18 ~~ksIAVVGaS~~------~~~~g~~v~~~L~~~g~~v~pVnP~~~~--i-------------------------~G~~~ 64 (139)
T d2d59a1 18 RYKKIALVGASPK------PERDANIVMKYLLEHGYDVYPVNPKYEE--V-------------------------LGRKC 64 (139)
T ss_dssp HCCEEEEETCCSC------TTSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEEC
T ss_pred cCCeEEEEeecCC------CCCchHHHHHHHHHCCCEEEEECCcccc--c-------------------------CCCcc
Confidence 4679999998653 4689999999999999999988886532 2 23455
Q ss_pred ecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh---HHHhhcCcEEEE
Q 011650 403 ASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV---EKLRKIGFIVYS 464 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~---~~~~~~g~~y~~ 464 (480)
..++.+.-+..|++++.++-....++ .+++.+. ..+ .|+=.-+.+++ +.+++.|+.+.|
T Consensus 65 ~~sl~dlp~~iD~v~i~vp~~~~~~~-~~e~~~~-g~k-~v~~~~G~~~ee~~~~a~~~gi~vig 126 (139)
T d2d59a1 65 YPSVLDIPDKIEVVDLFVKPKLTMEY-VEQAIKK-GAK-VVWFQYNTYNREASKKADEAGLIIVA 126 (139)
T ss_dssp BSSGGGCSSCCSEEEECSCHHHHHHH-HHHHHHH-TCS-EEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred cccccccCccceEEEEEeCHHHHHHH-HHHHHHh-CCC-EEEEeccccCHHHHHHHHHCCCEEEc
Confidence 67777766689999999886654332 2333333 333 55556677775 345567887754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.43 Score=43.81 Aligned_cols=140 Identities=15% Similarity=0.091 Sum_probs=75.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhh---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVR--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~--- 77 (480)
.+|.|||+|.-|. +..+.+..+..+|+++|+|++.++..++- .+. .-......++++ ..|..+-++
T Consensus 91 k~VLiiGgG~G~~--~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~-~~~-------~~~~~~d~rv~v~~~Da~~~l~~~~ 160 (295)
T d1inla_ 91 KKVLIIGGGDGGT--LREVLKHDSVEKAILCEVDGLVIEAARKY-LKQ-------TSCGFDDPRAEIVIANGAEYVRKFK 160 (295)
T ss_dssp CEEEEEECTTCHH--HHHHTTSTTCSEEEEEESCHHHHHHHHHH-CHH-------HHGGGGCTTEEEEESCHHHHGGGCS
T ss_pred ceEEEecCCchHH--HHHHHhcCCCceEEEecCCHHHHHHHHHH-HHh-------hcccccCCCcEEEhhhHHHHHhcCC
Confidence 4799999998766 44555542346799999999998876641 110 000011234443 345544443
Q ss_pred -cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH---HHHHHHhhcCCCceEEe
Q 011650 78 -EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA---IEKILMHNSRGINFQIL 153 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~---l~~~l~~~~~g~~~~v~ 153 (480)
.-|+||+-.+.|..... ..-. -.+.++.+...|+++-+++..+..+.-..+. +.+.+.+.......+..
T Consensus 161 ~~yDvIi~D~~dp~~~~~---~~L~----t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~ 233 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQG---GHLF----TEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLG 233 (295)
T ss_dssp SCEEEEEEEC-------------CC----SHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCcCch---hhhc----cHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEe
Confidence 46999998876532100 0011 1567788888999988888777665433333 33344443211122334
Q ss_pred eCCcc
Q 011650 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 234 ~vPty 238 (295)
T d1inla_ 234 FMTTY 238 (295)
T ss_dssp ECTTS
T ss_pred eecee
Confidence 55655
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=91.94 E-value=0.046 Score=50.92 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=28.4
Q ss_pred eEEEECCChhHHHHHHHHHHc---CCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALK---CPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~---~~G~~V~~~D~~~ 36 (480)
.|.|||.|..|+++|..|++. ..|++|+++|+.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence 489999999999999999731 1399999999764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.78 E-value=0.32 Score=40.47 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=32.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|-+|...++.+... | ..|++.|.++++.+..++
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~--G~~~vi~~~~~~~k~~~ak~ 71 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE 71 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred EEEEecchhHHHHHHHHHHHH--hcCceEEEcccHHHHHHHHH
Confidence 589999999999877766666 6 578899999998887765
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.75 E-value=0.69 Score=42.23 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=70.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHHh----
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHV---- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~---- 76 (480)
.||.|||+|..|.+ ..+.+..+.-+|.++|+|++.++..++-. + ..-......+++ ...|..+-+
T Consensus 82 k~VLiiGgG~G~~~--r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f-~-------~~~~~~~~~r~~i~~~Da~~~l~~~~ 151 (290)
T d1xj5a_ 82 KKVLVIGGGDGGVL--REVARHASIEQIDMCEIDKMVVDVSKQFF-P-------DVAIGYEDPRVNLVIGDGVAFLKNAA 151 (290)
T ss_dssp CEEEEETCSSSHHH--HHHTTCTTCCEEEEEESCHHHHHHHHHHC-H-------HHHGGGGSTTEEEEESCHHHHHHTSC
T ss_pred cceEEecCCchHHH--HHHHhcccceeeEEecCCHHHHHHHHHhc-h-------hhhccccCCCcEEEEccHHHHHhhcc
Confidence 47999999987774 44555422357999999999998776521 0 000001123443 234433333
Q ss_pred -hcCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 77 -REANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 77 -~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
...|+||+-++.|... ...+ +-.+.++.+...|+++-+++..+..+.-..+.+
T Consensus 152 ~~~yDvIi~D~~dp~~~-------~~~L-~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~ 205 (290)
T d1xj5a_ 152 EGSYDAVIVDSSDPIGP-------AKEL-FEKPFFQSVARALRPGGVVCTQAESLWLHMDII 205 (290)
T ss_dssp TTCEEEEEECCCCTTSG-------GGGG-GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHH
T ss_pred ccCccEEEEcCCCCCCc-------chhh-CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHH
Confidence 2469999988766422 1111 225678888999999888877665543333333
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=91.71 E-value=0.12 Score=48.19 Aligned_cols=112 Identities=12% Similarity=0.149 Sum_probs=65.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHh----
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHV---- 76 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (480)
.+|.|||+|.-|. +..+.+..+..+|++++++++.++..++....... + .....++++ ..|..+.+
T Consensus 79 k~VLiiG~G~G~~--~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~------~~~d~rv~i~~~Da~~~l~~~~ 149 (312)
T d1uira_ 79 KRVLIVGGGEGAT--LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-G------AFDDPRAVLVIDDARAYLERTE 149 (312)
T ss_dssp CEEEEEECTTSHH--HHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-T------GGGCTTEEEEESCHHHHHHHCC
T ss_pred ceEEEeCCCchHH--HHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-C------ccCCCceEEEEchHHHHhhhcC
Confidence 4799999997655 34444443356899999999998866542100000 0 001234443 45655544
Q ss_pred hcCCEEEEEccCCCCcCCCCCCCCC-chHHHHHHHHHHHhhCCCCcEEEEecC
Q 011650 77 REANIVFVSVNTPTKTQGLGAGKAA-DLTYWESAARMIADVSKSDKIVVEKST 128 (480)
Q Consensus 77 ~~aDvVii~Vptp~~~~~~~~~~~~-d~~~v~~~~~~i~~~l~~~~iVi~~ST 128 (480)
...|+||+-++.|...++ .+ .+ +-.+.++.+.+.|+++-+++..++
T Consensus 150 ~~yDvIi~D~~dp~~~~~-----~~~~L-~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDN-----PARLL-YTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp CCEEEEEEECCCCBSTTC-----GGGGG-SSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccc-----hhhhh-hhHHHHHHHHHhcCCCceEEEecC
Confidence 356999988866543211 01 11 125677888899998887766554
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=91.70 E-value=0.29 Score=40.56 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=54.8
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCC--CChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQ--VPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
++|.+|+++| |+++--+..++..+..-|+++.+.=|. .+........... .......
T Consensus 1 l~g~ki~~vG--------D~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~-------------~~~~~~~ 59 (161)
T d1vlva2 1 LKGVKVVFMG--------DTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEI-------------VKETDGS 59 (161)
T ss_dssp STTCEEEEES--------CTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHH-------------HHHHCCE
T ss_pred CCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHH-------------HhhcCCc
Confidence 4789999999 787767888889998899999998883 2222211100000 0001135
Q ss_pred eEEecChhhhcccCcEEEEeecCcccc
Q 011650 400 VIVASDAYEATKDSHGVCILTEWDEFK 426 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~~~~ 426 (480)
+.+.+++++|++++|+|.. +.|...+
T Consensus 60 i~~~~d~~~ai~~aDviyt-~~~q~~~ 85 (161)
T d1vlva2 60 VSFTSNLEEALAGADVVYT-DVWASMG 85 (161)
T ss_dssp EEEESCHHHHHTTCSEEEE-CCCC---
T ss_pred eEEEecHHHhhhhhhheec-cceeeec
Confidence 7888999999999999986 5664433
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.61 E-value=0.067 Score=47.86 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=29.3
Q ss_pred ceEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 2 VKICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|||.|| | .+-+|..+|..|++. |++|++.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~--Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECChH
Confidence 787766 5 678999999999999 999999999753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.57 E-value=0.069 Score=48.12 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=30.4
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||.|+|. |++|..++..|.++ ||+|++++|++
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL--GHPTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCC
Confidence 68999995 99999999999998 99999999864
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.55 E-value=0.42 Score=39.24 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCCEEEEEeeccCCCCCcccCCh-HHHHHHHHHhCCCeEEEECCCCC--hhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETP-AIDVCKGLMGDKARLSIYDPQVP--QEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp-~~~l~~~L~~~g~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+++.||+++| |+++|- +-.++..|..-|+++.+.-|.-- .+....... ....
T Consensus 2 l~gl~i~~vG--------D~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-----------------~~~~ 56 (157)
T d1ml4a2 2 IDGLKIGLLG--------DLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELR-----------------EKGM 56 (157)
T ss_dssp SSSEEEEEES--------CTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHH-----------------HTTC
T ss_pred cCCCEEEEEc--------CCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHH-----------------hhcc
Confidence 5789999998 998886 56899999999999999887432 111111110 0123
Q ss_pred ceEEecChhhhcccCcEEEEeecCccccccc
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFKNLD 429 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~ 429 (480)
.+.+.++++++++++|++.. +-|...+.-.
T Consensus 57 ~~~~~~d~~~av~~aDvvy~-~~~~~~~~~~ 86 (157)
T d1ml4a2 57 KVVETTTLEDVIGKLDVLYV-TRIQKERFPD 86 (157)
T ss_dssp CEEEESCTHHHHTTCSEEEE-CCCCGGGSSS
T ss_pred cceeecCHHHhhccCcEEEe-eccccccccc
Confidence 46778999999999997554 6676555433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=91.54 E-value=0.49 Score=42.91 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=78.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhh---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVR--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~--- 77 (480)
.+|.|||+|.-+. +..+.+..+..+|+++|+|++.++..++-. +. .-......++++ ..|..+-++
T Consensus 77 ~~vLiiGgG~G~~--~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~-~~-------~~~~~~d~r~~i~~~D~~~~l~~~~ 146 (274)
T d1iy9a_ 77 EHVLVVGGGDGGV--IREILKHPSVKKATLVDIDGKVIEYSKKFL-PS-------IAGKLDDPRVDVQVDDGFMHIAKSE 146 (274)
T ss_dssp CEEEEESCTTCHH--HHHHTTCTTCSEEEEEESCHHHHHHHHHHC-HH-------HHTTTTSTTEEEEESCSHHHHHTCC
T ss_pred ceEEecCCCCcHH--HHHHHhcCCcceEEEecCCHHHHHHHHHhC-hh-------hcccccCCCeEEEechHHHHHhhcC
Confidence 4799999998666 344444322468999999999988766521 00 000001234432 344333333
Q ss_pred -cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH---HHHHHhhcCCCceEEe
Q 011650 78 -EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI---EKILMHNSRGINFQIL 153 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l---~~~l~~~~~g~~~~v~ 153 (480)
.-|+||+-.+.|... ...+ +-++.++.+...|+++-+++..+..+....+.+ .+.+++.......+..
T Consensus 147 ~~yDvIi~D~~~p~~~-------~~~L-~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~ 218 (274)
T d1iy9a_ 147 NQYDVIMVDSTEPVGP-------AVNL-FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTA 218 (274)
T ss_dssp SCEEEEEESCSSCCSC-------CCCC-STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc-------chhh-ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEE
Confidence 469999998766432 1221 125677888889999888877666554444333 3344443211122344
Q ss_pred eCCcc
Q 011650 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 219 ~vPsy 223 (274)
T d1iy9a_ 219 NIPTY 223 (274)
T ss_dssp CCTTS
T ss_pred Eeeec
Confidence 56655
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=91.47 E-value=0.13 Score=46.91 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=33.9
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAE--GAKVAVLDKSAERLAELET 47 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55655 4 689999999999999 9999999999988876653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.19 Score=41.31 Aligned_cols=100 Identities=8% Similarity=-0.031 Sum_probs=64.6
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecC
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASD 405 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (480)
||+|+|.. +-.-.++..|.+.|.+|.+++-........... .. ...........+
T Consensus 2 kI~IiGaG----------~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~---~~------------~~~~~~~~~~~~ 56 (167)
T d1ks9a2 2 KITVLGCG----------ALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLV---ET------------DGSIFNESLTAN 56 (167)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEE---CT------------TSCEEEEEEEES
T ss_pred EEEEECcC----------HHHHHHHHHHHHCCCceEEEEcCHHHhhhhccc---cC------------Cccccccccccc
Confidence 79999964 478889999999999999998654432211100 00 011112223345
Q ss_pred hhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCC
Q 011650 406 AYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD 451 (480)
Q Consensus 406 ~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~ 451 (480)
..+++.++|.++++|.-....+ -.+.+...+.+...|+...|=+.
T Consensus 57 ~~~~~~~~D~iii~vka~~~~~-~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 57 DPDFLATSDLLLVTLKAWQVSD-AVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp CHHHHHTCSEEEECSCGGGHHH-HHHHHHTTSCTTSCEEEECSSSC
T ss_pred hhhhhcccceEEEeecccchHH-HHHhhccccCcccEEeeccCccc
Confidence 6677899999999998776544 24456666665567888877443
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.19 E-value=0.07 Score=44.21 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.||.|||.|+.|.-+|..|++ +.+|+++++.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKE 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT---TSEEEEECSS
T ss_pred CeEEEECCcHHHHHHHHHHHc---CCCEEEEecc
Confidence 389999999999999999865 6799999864
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.14 Score=45.72 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=33.1
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+-|.| .+.+|..+|..|++. |++|++.|+++++++++.+
T Consensus 10 ~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~ 49 (244)
T d1pr9a_ 10 VLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp EEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 44445 688999999999999 9999999999998887664
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=91.09 E-value=0.14 Score=42.25 Aligned_cols=67 Identities=22% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCEEEEEeeccCCCCCcccCC-hHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 323 SGKKIAILGFAFKKDTGDTRET-PAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
++.+|+++| |+++| -+..++..|.+-|++|.+--|---.. ....+.
T Consensus 2 ~gl~i~~vG--------D~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~-------------------------~~~~~~ 48 (151)
T d2at2a2 2 KGLTVSIHG--------DIKHSRVARSNAEVLTRLGARVLFSGPSEWQD-------------------------EENTFG 48 (151)
T ss_pred CCCEEEEEc--------CCCCCHHHHHHHHHHHHcCCcccccCCchhhc-------------------------ccccee
Confidence 578999998 99987 56678888888999999888842110 013466
Q ss_pred EecChhhhcccCcEEEEeecCc
Q 011650 402 VASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
+..+++++++++|+|.. +-|.
T Consensus 49 ~~~~~~ea~~~aDviy~-~r~q 69 (151)
T d2at2a2 49 TYVSMDEAVESSDVVML-LRIQ 69 (151)
T ss_pred EEEechhccccCceeee-eEEE
Confidence 77899999999998865 4453
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.99 E-value=0.79 Score=40.39 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=32.7
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+.+|..+|..|+++ |++|++.+++.++.+++.+
T Consensus 6 K~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~ 47 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVA 47 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 567999999999999 9999999999988766543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.94 E-value=0.091 Score=42.30 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=57.5
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
.+|+|||+ |.+|..+..+|.+.+ .++|+.+....+.+ .+.+...++.+.=.
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i------------------------~G~~~y~sl~dlp~ 63 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEV------------------------QGVKAYKSVKDIPD 63 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEE------------------------TTEECBSSTTSCSS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcccc------------------------CCeEeecchhhcCC
Confidence 36999997 899999999987652 36888887643211 23566677776445
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCC
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv 129 (480)
..|++++++|. +.+.+++++..+.=- ..+++..+..
T Consensus 64 ~vDlvvi~vp~---------------~~~~~~~~~~~~~g~-~~~vi~s~Gf 99 (129)
T d2csua1 64 EIDLAIIVVPK---------------RFVKDTLIQCGEKGV-KGVVIITAGF 99 (129)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHHTC-CEEEECCCSS
T ss_pred CCceEEEecCh---------------HHhHHHHHHHHHcCC-CEEEEecccc
Confidence 78999999974 235666666665432 3455555443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.7 Score=42.08 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=64.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHHhh---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHVR--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~~--- 77 (480)
.+|-|||+|.-|. +..+.+..+..+|+++|+|++.++..++-. + .........+++ ...|..+-++
T Consensus 80 k~vLiiGgG~G~~--~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~-~-------~~~~~~~d~rv~i~~~Da~~~l~~~~ 149 (285)
T d2o07a1 80 RKVLIIGGGDGGV--LREVVKHPSVESVVQCEIDEDVIQVSKKFL-P-------GMAIGYSSSKLTLHVGDGFEFMKQNQ 149 (285)
T ss_dssp CEEEEEECTTSHH--HHHHTTCTTCCEEEEEESCHHHHHHHHHHC-H-------HHHGGGGCTTEEEEESCHHHHHHTCS
T ss_pred CeEEEeCCCchHH--HHHHHHcCCcceeeeccCCHHHHHHHHhhc-h-------hhccccCCCCceEEEccHHHHHhcCC
Confidence 4799999998766 444555423468999999999998776521 0 000001123444 3445554443
Q ss_pred -cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCC
Q 011650 78 -EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP 130 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~ 130 (480)
.-|+||+-++.|... +..=+-.+.++.+...|+++-+++..+..+
T Consensus 150 ~~yDvIi~D~~~p~~~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 150 DAFDVIITDSSDPMGP--------AESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp SCEEEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCCEEEEcCCCCCCc--------ccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 459999998765422 111122566788888999888877665443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.92 E-value=0.16 Score=45.73 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=33.9
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAA 47 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 66666 4689999999999999 9999999999988776553
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.90 E-value=0.15 Score=46.08 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=35.1
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 67887 6789999999999999 9999999999988876653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.16 Score=45.64 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=33.6
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQ 48 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 45555 5 589999999999999 9999999999988877654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.74 E-value=0.81 Score=40.76 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=31.8
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDIS-VPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~ 43 (480)
|+++| |.+-+|..+|..|++. |++|++.+++ ++..+++.
T Consensus 5 K~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~ 46 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVR 46 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHH
Confidence 57777 6678999999999999 9999999997 45555544
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.66 E-value=0.084 Score=47.17 Aligned_cols=34 Identities=29% Similarity=0.163 Sum_probs=30.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
.|.|||.|..|+..|..++++ |++|.++|.++..
T Consensus 6 DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKI 39 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCC
Confidence 389999999999999999998 9999999988643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=90.66 E-value=1.4 Score=37.80 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.+++++||+|-|+ .+-...+++.|.+.|++|.++|+.... +.+... .+
T Consensus 23 ~~L~gk~v~IqG~----------G~VG~~~A~~L~~~Gakvvv~d~d~~~--~~~~~~--------------------~g 70 (201)
T d1c1da1 23 GSLDGLTVLVQGL----------GAVGGSLASLAAEAGAQLLVADTDTER--VAHAVA--------------------LG 70 (201)
T ss_dssp CCSTTCEEEEECC----------SHHHHHHHHHHHHTTCEEEEECSCHHH--HHHHHH--------------------TT
T ss_pred CCCCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEecchHHH--HHHHHh--------------------hc
Confidence 3789999999997 356789999999999999999986433 222111 11
Q ss_pred eEEecChhhhcc-cCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCC-C-Ch---HHHhhcCcEE
Q 011650 400 VIVASDAYEATK-DSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNI-L-DV---EKLRKIGFIV 462 (480)
Q Consensus 400 ~~~~~~~~~a~~-~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~-~-~~---~~~~~~g~~y 462 (480)
.+.. +.++.+. .+|+++-+.--.. ++.+.+ +.++.. +|+-+-|. + ++ +.+.+.|+.|
T Consensus 71 ~~~~-~~~~~~~~~~DI~iPcA~~~~---I~~~~a-~~i~ak-~i~e~AN~p~~~~~~~~~L~~rgI~~ 133 (201)
T d1c1da1 71 HTAV-ALEDVLSTPCDVFAPCAMGGV---ITTEVA-RTLDCS-VVAGAANNVIADEAASDILHARGILY 133 (201)
T ss_dssp CEEC-CGGGGGGCCCSEEEECSCSCC---BCHHHH-HHCCCS-EECCSCTTCBCSHHHHHHHHHTTCEE
T ss_pred cccc-Cccccccccceeeeccccccc---ccHHHH-hhhhhh-eeeccCCCCcchhhHHHHhcccceEE
Confidence 2222 3444444 7898776543333 555544 445555 89999984 3 33 2456678876
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=90.62 E-value=0.066 Score=50.23 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||||-|.| .|++|..++..|.++ |++|.++.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~--g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNN--HPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHC--CCCeEEEEE
Confidence 89999998 799999999999998 777554443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=90.62 E-value=0.2 Score=40.49 Aligned_cols=63 Identities=11% Similarity=-0.042 Sum_probs=47.1
Q ss_pred ceEEEECC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhh
Q 011650 2 VKICCIGA----GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVR 77 (480)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (480)
++|+|||+ +..|..++..|.+. |+++..+..++..- .+ .+.....++.+.-.
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~--g~~~~~v~~~~~~~--------~i--------------~g~~~~~~l~~i~~ 69 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYRVLPVNPRFQGE--------EL--------------FGEEAVASLLDLKE 69 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT--TCEEEEECGGGTTS--------EE--------------TTEECBSSGGGCCS
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC--CCCceEEEeccccc--------ee--------------eceecccchhhccC
Confidence 46999997 78999999999998 99999988754210 00 23566677776435
Q ss_pred cCCEEEEEccC
Q 011650 78 EANIVFVSVNT 88 (480)
Q Consensus 78 ~aDvVii~Vpt 88 (480)
..|++++|+|.
T Consensus 70 ~iD~v~v~~p~ 80 (136)
T d1iuka_ 70 PVDILDVFRPP 80 (136)
T ss_dssp CCSEEEECSCH
T ss_pred CCceEEEeccH
Confidence 67999999984
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.60 E-value=0.5 Score=39.19 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=53.3
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCC--ChhHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQV--PQEHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+++|.+|+++| |.++ -+..++..|..-|++|.+.-|.. +++++........ .....
T Consensus 1 sl~gl~Ia~VG--------D~~n-v~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~-------------~~~~~ 58 (163)
T d1pvva2 1 TIKGVKVVYVG--------DGNN-VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA-------------AESGG 58 (163)
T ss_dssp CCTTCEEEEES--------CCCH-HHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH-------------HHHTC
T ss_pred CcCCCEEEEEC--------CCcH-HHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh-------------hcccc
Confidence 46899999999 4332 44788888888899999888752 2222211110000 00013
Q ss_pred ceEEecChhhhcccCcEEEEeecCcccc
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWDEFK 426 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~~~~ 426 (480)
.+++..++.+|++++|+|. .+-|...+
T Consensus 59 ~~~~~~d~~ea~~~adviy-~~~~~~~~ 85 (163)
T d1pvva2 59 SFELLHDPVKAVKDADVIY-TDVWASMG 85 (163)
T ss_dssp EEEEESCHHHHTTTCSEEE-ECCCCCSS
T ss_pred eEEEecCHHHHhhhccEEe-ecceeecc
Confidence 4678899999999999766 57775543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.1 Score=46.51 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=32.8
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| |.+.+|..+|..|++. |++|++.|++++..+++.
T Consensus 6 KvalITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~ 46 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSGGEAQA 46 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHHHHHHH
Confidence 67766 5688999999999999 999999999987766544
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.55 E-value=0.29 Score=43.65 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=27.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEe
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD 33 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D 33 (480)
.+|+|-|.|.||..+|..|.+. |.+|++++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~--Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKM--GAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT--TCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEee
Confidence 4799999999999999999998 99998766
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.54 E-value=0.17 Score=45.84 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=34.1
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++.+++.+
T Consensus 7 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 5688999999999999 9999999999988876653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.50 E-value=0.21 Score=43.02 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=32.8
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+|.+|+..+...... .+.+|++.|.++++.+..++
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhh
Confidence 689999999998766655444 24589999999999988776
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.12 Score=46.23 Aligned_cols=41 Identities=12% Similarity=0.329 Sum_probs=34.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
||.|||+|.+|+.+|..|++. |. +++++|-|.-....|++.
T Consensus 32 ~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~Ve~sNL~RQ 73 (247)
T d1jw9b_ 32 RVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVSLSNLQRQ 73 (247)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCCGGGGGTC
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCCeEEEECCcccchhhhhhh
Confidence 799999999999999999998 65 799999876555556654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.34 E-value=0.44 Score=40.46 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCC--ChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQV--PQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
|++++.+|+++| |.+|.-+..++..+..-|++|++-=|-. .++++........ ...-
T Consensus 1 k~l~~lkia~vG--------D~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~-------------~~~~ 59 (185)
T d1dxha2 1 KPLHDISYAYLG--------DARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFA-------------EESG 59 (185)
T ss_dssp SCGGGCEEEEES--------CCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHH-------------HHHT
T ss_pred CCCCCCEEEEEc--------CCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHh-------------hccC
Confidence 457889999998 7888888999999999999999998842 1111111000000 0001
Q ss_pred CceEEecChhhhcccCcEEEEeecCcc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
..+++.+++++|++++|+|. .+-|..
T Consensus 60 ~~~~~~~d~~eai~~aDvVy-t~~w~~ 85 (185)
T d1dxha2 60 AKLTLTEDPKEAVKGVDFVH-TDVWVS 85 (185)
T ss_dssp CEEEEESCHHHHTTTCSEEE-ECCCSC
T ss_pred CeEEEEeChhhccccccEEE-eehhhh
Confidence 35778899999999999765 466643
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.32 E-value=0.12 Score=49.21 Aligned_cols=35 Identities=37% Similarity=0.537 Sum_probs=30.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
|||.|.| .|++|..++..|.++ ||+|+++|--..+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~--g~~V~~iDnl~~~ 37 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRR 37 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEecCCcc
Confidence 7999997 699999999999998 9999999944333
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.30 E-value=0.18 Score=45.72 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=34.0
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQ 47 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 5688999999999999 9999999999988776553
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=90.29 E-value=0.13 Score=47.92 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+||-|.| .|++|..++..|.++ |++|+++|++...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~--g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTM--GATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCc
Confidence 5899998 799999999999999 9999999997643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=90.27 E-value=0.19 Score=46.89 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=35.6
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|.|.| .|++|..++..|.++ |++|++..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~--G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCchhHHHHHH
Confidence 4799997 699999999999998 9999999999888776653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.22 E-value=0.64 Score=41.47 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=31.9
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++.+++.
T Consensus 10 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~ 50 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVT 50 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 56666 5677999999999999 999999999987665443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.14 E-value=0.18 Score=45.33 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=34.0
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 4 678999999999999 9999999999988877653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.14 E-value=0.69 Score=42.68 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=75.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHhh---
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHVR--- 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~--- 77 (480)
.+|.|||+|.-|.+ ..+.+..+..+|.++++|++.++..++-. +.....+ ...++++ ..|..+.++
T Consensus 108 k~VLIiGgG~G~~~--rellk~~~v~~v~~VEID~~Vv~~a~~~~-~~~~~~~-------~dprv~i~i~Da~~~l~~~~ 177 (312)
T d2b2ca1 108 KRVLIIGGGDGGIL--REVLKHESVEKVTMCEIDEMVIDVAKKFL-PGMSCGF-------SHPKLDLFCGDGFEFLKNHK 177 (312)
T ss_dssp CEEEEESCTTSHHH--HHHTTCTTCCEEEEECSCHHHHHHHHHHC-TTTSGGG-------GCTTEEEECSCHHHHHHHCT
T ss_pred CeEEEeCCCchHHH--HHHHHcCCcceEEEEcccHHHHHHHHhhc-hhhcccc-------CCCCeEEEEchHHHHHHhCC
Confidence 47999999987763 44555422358999999999998776521 1110001 1234443 345444443
Q ss_pred -cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHH---HHHHHHhhcCCCceEEe
Q 011650 78 -EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA---IEKILMHNSRGINFQIL 153 (480)
Q Consensus 78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~---l~~~l~~~~~g~~~~v~ 153 (480)
..|+||+-++.|... +.-=+-.+.++.+...|+++-+++..+..+.-..+. +.+.+.+......++..
T Consensus 178 ~~yDvII~D~~dp~~~--------~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~ 249 (312)
T d2b2ca1 178 NEFDVIITDSSDPVGP--------AESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS 249 (312)
T ss_dssp TCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred CCCCEEEEcCCCCCCc--------chhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeee
Confidence 469999988765322 111123667788889999988887776655443333 33344443211223344
Q ss_pred eCCcc
Q 011650 154 SNPEF 158 (480)
Q Consensus 154 ~~Pe~ 158 (480)
+-|.+
T Consensus 250 ~vPty 254 (312)
T d2b2ca1 250 IVSTY 254 (312)
T ss_dssp ECTTS
T ss_pred ccCCc
Confidence 55654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.11 E-value=0.14 Score=42.12 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=28.4
Q ss_pred EEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 4 ICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 4 I~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
+.|+ |.|++|+.+|..|++. |++|+++++.+.-
T Consensus 42 vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 42 VVILNADTYFMAPSLAEKLATA--GHEVTIVSGVHLA 76 (156)
T ss_dssp EEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSCTT
T ss_pred eEEEecCCChHHHHHHHHHHHc--CCeEEEEecCCcc
Confidence 4444 9999999999999999 9999999987543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.95 E-value=0.21 Score=44.54 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=34.0
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56655 5 578999999999999 9999999999988877654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=89.73 E-value=1.6 Score=38.26 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=33.5
Q ss_pred ceEEEE-C-CChhHHHHHHHHHHcCCCCe-------EEEEeCCHHHHHHHHc
Q 011650 2 VKICCI-G-AGYVGGPTMAVIALKCPSIE-------VAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~-------V~~~D~~~~~v~~l~~ 44 (480)
++|.+| | .+-+|..+|..|+++ |++ |+++++++++++++.+
T Consensus 1 K~VvlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHH
Confidence 366655 5 477999999999998 876 9999999998877653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.72 E-value=0.21 Score=45.27 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=33.6
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 55666 5678999999999998 9999999999988776553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.70 E-value=0.98 Score=37.90 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHh---hc
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHV---RE 78 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---~~ 78 (480)
+|.=||||.-+.+++ +++. +.+|+++|++++.++..++.. -+.....++++ ..|..+.. ..
T Consensus 36 ~VLDiGcGsG~~s~~--lA~~--~~~V~avD~~~~~l~~a~~n~-----------~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 36 VAVDVGCGTGGVTLE--LAGR--VRRVYAIDRNPEAISTTEMNL-----------QRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp EEEEESCTTSHHHHH--HHTT--SSEEEEEESCHHHHHHHHHHH-----------HHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred EEEEEECCeEccccc--cccc--ceEEEEecCCHHHHHHHHHHH-----------HHcCCCcceEEEECchhhcccccCC
Confidence 344478887666544 5665 679999999999988776520 00001124433 34544433 46
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
.|.|++.-+. ..+...++.+...++++..++.. .....+...+.+.+++.
T Consensus 101 ~D~v~~~~~~---------------~~~~~~~~~~~~~LkpgG~lvi~-~~~~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 101 IDIAVVGGSG---------------GELQEILRIIKDKLKPGGRIIVT-AILLETKFEAMECLRDL 150 (186)
T ss_dssp EEEEEESCCT---------------TCHHHHHHHHHHTEEEEEEEEEE-ECBHHHHHHHHHHHHHT
T ss_pred cCEEEEeCcc---------------ccchHHHHHHHHHhCcCCEEEEE-eeccccHHHHHHHHHHc
Confidence 7888765321 11356778888888887655432 22233333444555554
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.67 E-value=0.12 Score=40.54 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=27.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcC-CCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|.-+|..|...+ .|.+|+++++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 47999999999999998776541 256899998754
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=89.64 E-value=0.36 Score=39.44 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=61.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCceEEe
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDK-ARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVA 403 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (480)
+|+++|.. ..+..+++.|.+.| .+|.+||+.-+.- .+.+.+ ++...
T Consensus 2 kI~fIG~G----------~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~ 49 (152)
T d1yqga2 2 NVYFLGGG----------NMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----------------------GVETS 49 (152)
T ss_dssp EEEEECCS----------HHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----------------------CCEEE
T ss_pred EEEEEcCc----------HHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----------------------ccccc
Confidence 68888863 47888999888877 9999999974432 222222 34555
Q ss_pred cChhhhcccCcEEEEeecCcccccccHHHHHhhcC-CCCEEEEcCCCCChHHHhh
Q 011650 404 SDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQ-KPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 404 ~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~~~~~~~~~~~ 457 (480)
++.+ +++++|+|++++.-..+. .+.+.++ ...+|+..-.=.+.+.+++
T Consensus 50 ~~~~-~v~~~Div~lavkP~~~~-----~v~~~l~~~~~~viS~~ag~~~~~l~~ 98 (152)
T d1yqga2 50 ATLP-ELHSDDVLILAVKPQDME-----AACKNIRTNGALVLSVAAGLSVGTLSR 98 (152)
T ss_dssp SSCC-CCCTTSEEEECSCHHHHH-----HHHTTCCCTTCEEEECCTTCCHHHHHH
T ss_pred cccc-cccccceEEEecCHHHHH-----HhHHHHhhcccEEeecccCCCHHHHHH
Confidence 5554 478899999998743333 3333332 2348888777666666654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.60 E-value=0.39 Score=40.88 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=49.5
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCC-----CCCcCce
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTS-----PSTINQV 400 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 400 (480)
||+|+|+.| -.+.++-.| ++|.+|..||..-.. + ..+.. +. .| ..+.. ......+
T Consensus 2 kI~ViGlG~----------vGl~~a~~~-a~g~~V~g~Din~~~--v-~~l~~-g~---~p--~~e~~l~~~~~~~~~~~ 61 (196)
T d1dlja2 2 KIAVAGSGY----------VGLSLGVLL-SLQNEVTIVDILPSK--V-DKINN-GL---SP--IQDEYIEYYLKSKQLSI 61 (196)
T ss_dssp EEEEECCSH----------HHHHHHHHH-TTTSEEEEECSCHHH--H-HHHHT-TC---CS--SCCHHHHHHHHHSCCCE
T ss_pred EEEEECCCh----------hHHHHHHHH-HCCCcEEEEECCHHH--H-HHHhh-cc---cc--cchhhHHHHhhhhhhhh
Confidence 799999999 889988666 579999999985332 1 11110 00 00 00000 0011335
Q ss_pred EEecChhhhcccCcEEEEeecCcc
Q 011650 401 IVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
....+...+..++|.++++|+-+.
T Consensus 62 ~~~~~~~~~~~~~~ii~v~vpt~~ 85 (196)
T d1dlja2 62 KATLDSKAAYKEAELVIIATPTNY 85 (196)
T ss_dssp EEESCHHHHHHHCSEEEECCCCCE
T ss_pred hccchhhhhhhccccccccCCccc
Confidence 556677888899999999987764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.82 Score=41.00 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=35.0
Q ss_pred ceEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
|+|+|| |.+-+|..+|..|++.+ |..|++.+|++++.++..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~ 45 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAV 45 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHH
Confidence 689999 77899999999999742 789999999999877655
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.53 E-value=0.23 Score=44.18 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=32.7
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+-|.| .+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 8 alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 8 ALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp EEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 34446 478999999999999 9999999999988877654
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.52 E-value=0.095 Score=43.90 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.+|.|||.|..|.-+|..|++. |.+|+++.+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHc--CCceEEEEecC
Confidence 4799999999999999999998 88877766543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.44 E-value=0.21 Score=38.92 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=28.3
Q ss_pred ceEEEECCChhHHHHHHHHHHc-CCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALK-CPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~-~~G~~V~~~D~~~ 36 (480)
.+|+|||.|++|.-+|..|++. ..|.+|+++++.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 4799999999999999877643 1278999999864
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.30 E-value=0.24 Score=44.53 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=33.7
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| |.+-+|..+|..|++. |++|++.|+++++++++.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLS 50 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 56666 5678999999999999 9999999999988776553
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.95 Score=38.48 Aligned_cols=122 Identities=12% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-----HHhhhh---cccCCCCCCCCCCCCCCC
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-----IQRDLQ---MNKFDWDHPIHLQPTSPS 395 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~ 395 (480)
-+||+|+|... ..-.++..+...|++|.+||+.-...+ +.+.+. ..++..+ +.........
T Consensus 4 IkkvaViGaG~----------mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~ 72 (192)
T d1f0ya2 4 VKHVTVIGGGL----------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAEN-PKAGDEFVEK 72 (192)
T ss_dssp CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHH
T ss_pred eEEEEEECcCH----------HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhcc-chhhHHHHHH
Confidence 36999999754 888999999999999999998654321 111110 0000000 0000000000
Q ss_pred CcCceEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChHHHh
Q 011650 396 TINQVIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLR 456 (480)
Q Consensus 396 ~~~~~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~ 456 (480)
....+....++.++++++|.|+-++.=+ +.|.-=++++.+.+++..++.-....+....+.
T Consensus 73 ~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la 134 (192)
T d1f0ya2 73 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA 134 (192)
T ss_dssp HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred HHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhh
Confidence 1235778889999999999998865432 222222445555556666666666677765554
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=89.08 E-value=0.25 Score=44.38 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=32.3
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+-|-| .+-+|..+|..|++. |++|++.|+++++.+++.+
T Consensus 8 alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 8 VIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATAR 47 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 34445 568999999999998 9999999999988776654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.05 E-value=0.16 Score=43.83 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.+++.+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMY--GQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence 489999999999999999998 9999999975
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=89.03 E-value=0.14 Score=46.36 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
.|.|||.|.-|+..|..|+++ .|++|+++|..+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCC
Confidence 389999999999999999862 3999999998653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.082 Score=46.70 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=44.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhc
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPS--IEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVRE 78 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (480)
+||.|.| .|++|..+...|.++ | ++|+++.|++.....-........ ...+.-..++.+++.+
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~~R~~~~~~~~~~~~i~~~------------~~D~~~~~~~~~~~~~ 80 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDEEAYKNVNQE------------VVDFEKLDDYASAFQG 80 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCSGGGGGCEEE------------ECCGGGGGGGGGGGSS
T ss_pred CEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEEecChhhhcccccceeeee------------eecccccccccccccc
Confidence 4699997 699999999999988 6 589999986532111000000000 0000011244556789
Q ss_pred CCEEEEEccC
Q 011650 79 ANIVFVSVNT 88 (480)
Q Consensus 79 aDvVii~Vpt 88 (480)
+|++|.|+.+
T Consensus 81 ~d~vi~~~~~ 90 (232)
T d2bkaa1 81 HDVGFCCLGT 90 (232)
T ss_dssp CSEEEECCCC
T ss_pred cccccccccc
Confidence 9999999864
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.90 E-value=0.59 Score=42.65 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=33.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEe-----------CCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-----------ISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-----------~~~~~v~~l~~ 44 (480)
++|+|-|.|.||..+|..|.+. |..|++++ +|.+.+..+..
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~--Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~ 88 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRF--GAKCVAVGESDGSIWNPDGIDPKELEDFKL 88 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEEEETTEEECCTTCCCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEccchhhccccccchHHHHHHHH
Confidence 3799999999999999999998 99998875 55566655554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.86 E-value=0.27 Score=44.00 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred eEEEE-C-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALK-CPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~ 44 (480)
||+|| | .+-+|..+|..|++. ..|++|++.++++++++++.+
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~ 51 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE 51 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence 78999 5 468999999999861 128999999999998877653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.85 E-value=1.3 Score=40.01 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=69.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHHh---h
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKHV---R 77 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---~ 77 (480)
.+|.|||+|.-+.+ ..+.+. +..+|+++|+|++.++..++- .+.. .+..+........++++ ..|..+-+ +
T Consensus 74 ~~vLiiG~G~G~~~--~~~l~~-~~~~v~~VEiD~~Vi~~a~~~-f~~~-~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 74 KRVLVIGGGDGGTV--REVLQH-DVDEVIMVEIDEDVIMVSKDL-IKID-NGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp CEEEEEECTTSHHH--HHHTTS-CCSEEEEEESCHHHHHHHHHH-TCTT-TTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred ceEEEecCCchHHH--HHHHHh-CCceEEEecCCHHHHHHHHHh-hhhc-cchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 47999999987664 333444 345899999999999876641 1211 11111111112244543 34443322 4
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHH
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI 137 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l 137 (480)
.-|+||+-++.|... ...+ +-.+.++.+...|+++-+++..+..+....+.+
T Consensus 149 ~yDvIi~D~~~~~~~-------~~~L-~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~ 200 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGP-------AKVL-FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDEL 200 (276)
T ss_dssp CEEEEEEECCCCC------------T-TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHH
T ss_pred CCCEEEEeCCCCCCC-------cccc-cCHHHHHhhHhhcCCCceEEEecCCcchhHHHH
Confidence 679999988766422 1111 115678888899998887766555444333333
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=88.60 E-value=1.9 Score=38.31 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=30.7
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVP-RINAW 42 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l 42 (480)
|+++| |.+-+|..+|..|++. |++|++.+++.+ ..+.+
T Consensus 8 K~alITGas~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~ 48 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHH
Confidence 67777 5788999999999998 999999999753 44433
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.29 Score=44.08 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=33.3
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
|+++| | .+-+|..+|..|+++ |++|++.+|++++++++.+
T Consensus 15 K~alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 44554 5 567999999999999 9999999999998887653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.52 E-value=1.2 Score=37.61 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=50.7
Q ss_pred ceEEEEC-C-ChhHHHHHHHHHHcCCCCeEEEEeC-----CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 2 VKICCIG-A-GYVGGPTMAVIALKCPSIEVAVVDI-----SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIG-l-G~~G~~lA~~La~~~~G~~V~~~D~-----~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
.||++|| + -.|..+++..++.- |.+|+++.. +++.++.+++ ... .....+++++++++
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~--G~~l~l~~P~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~d~~e 70 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKL--GMDVRIAAPKALWPHDEFVAQCKK------------FAE-ESGAKLTLTEDPKE 70 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHT--TCEEEEECCGGGSCCHHHHHHHHH------------HHH-HHTCEEEEESCHHH
T ss_pred CEEEEEcCCcchHHHHHHHHHHHc--CCEEEEEccHHHHhhhHHHHHHHH------------Hhh-ccCCeEEEEeChhh
Confidence 4899999 4 58999999999887 999998875 3333333322 000 12356889999999
Q ss_pred HhhcCCEEEEEc
Q 011650 75 HVREANIVFVSV 86 (480)
Q Consensus 75 a~~~aDvVii~V 86 (480)
+++++|+|..-+
T Consensus 71 ai~~aDvVyt~~ 82 (185)
T d1dxha2 71 AVKGVDFVHTDV 82 (185)
T ss_dssp HTTTCSEEEECC
T ss_pred ccccccEEEeeh
Confidence 999999987654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.14 Score=44.97 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=33.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|-.+|||. | ..+..|+++ |++|+++|.+++.++..++
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~--G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADR--GHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC-c-HHHHHHHhC--CCcEEEEeCCHHHHHHHHH
Confidence 3788999999 4 457888998 9999999999999987764
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=88.08 E-value=0.34 Score=43.18 Aligned_cols=68 Identities=18% Similarity=0.074 Sum_probs=51.3
Q ss_pred CceEEecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEe
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV------EKLRKIGFIVYSI 465 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~i 465 (480)
-++++++|..|+++++|+|+++++.++...--+++|.+.+++..+|+|...+-.. +.+.+.|++|.+.
T Consensus 127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~ 200 (242)
T d2b0ja2 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSY 200 (242)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEEC
T ss_pred CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECC
Confidence 4578899999999999999999977654332356788888888899999987643 2233458888654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.06 E-value=0.17 Score=47.22 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=31.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRI 39 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v 39 (480)
++|.|+| .|++|..++..|.++ ||+|+++-|+++..
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~--G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGL 40 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSH
T ss_pred CEEEEECCChHHHHHHHHHHHhC--CCeEEEEECCcchh
Confidence 4799998 599999999999998 99999998876543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=87.90 E-value=0.18 Score=46.01 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||.|..|+..|..++++ |.+|++++..+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDS--GAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC
Confidence 389999999999999999998 99999999754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=87.90 E-value=1.9 Score=36.23 Aligned_cols=117 Identities=10% Similarity=0.049 Sum_probs=65.9
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCC-CCCCCCCCCCcCc
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHP-IHLQPTSPSTINQ 399 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 399 (480)
.+...+|.|+|..- -.+.-++.-.+.|+.|.+||-.....+..+.++-....-... ....++..+....
T Consensus 26 ~V~pa~VvViGaGv----------aG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~ 95 (183)
T d1l7da1 26 TVPPARVLVFGVGV----------AGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKE 95 (183)
T ss_dssp EECCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------
T ss_pred CcCCcEEEEEcCcH----------HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhh
Confidence 34678999999632 666777777788999999997766533222222000000000 0000000000000
Q ss_pred e------EEecChhhhcccCcEEEEeecCccccc--ccHHHHHhhcCCCCEEEEcC
Q 011650 400 V------IVASDAYEATKDSHGVCILTEWDEFKN--LDYQKIYNNMQKPAFVFDGR 447 (480)
Q Consensus 400 ~------~~~~~~~~a~~~~d~~vi~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~ 447 (480)
. ...+.+.+.++.+|.||-.+-.|-=+. +--++..+.|++..+|+|..
T Consensus 96 ~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 96 MGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp ------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred cCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 0 001234566889999998887775443 33467889999989999973
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=87.85 E-value=0.24 Score=42.65 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=34.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHH
Q 011650 2 VKICCIGAGYVGGPTMAVIALKC-PSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~~~v~~l~ 43 (480)
|||.|||.|--|.-++..|.+.+ .+.+.+.+|.|.+.++...
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~ 43 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASN 43 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCC
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCC
Confidence 69999999999999999998762 3457788999988776533
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.81 E-value=0.21 Score=43.05 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=28.6
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
-|.|||.|..|+..|..+++. |.+|+++|..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~ 35 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKR 35 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHH--TCCEEEEECS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence 378999999999999999998 9999999975
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.76 E-value=0.35 Score=42.57 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=31.7
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011650 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWN 43 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~ 43 (480)
+-|-| .+-+|..+|..|++. |++|++.|++++.+++..
T Consensus 7 ~lVTGas~GIG~aia~~l~~~--Ga~V~~~~r~~~~l~~~~ 45 (234)
T d1o5ia_ 7 VLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRSG 45 (234)
T ss_dssp EEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHTC
T ss_pred EEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHhcC
Confidence 44556 578999999999999 999999999998776543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.72 E-value=0.79 Score=40.98 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=26.1
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
.+|+|-|.|.||..+|..|.+. |.+|+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~--Gakvvav 65 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAEL--GAKAVTL 65 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHH--TCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEE
Confidence 4799999999999999999998 8988764
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.21 Score=46.89 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=27.3
Q ss_pred eEE-EEC-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
||+ |.| .|++|..++..|.++ ||+|+++|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~--g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 666 667 899999999999998 99999999854
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.25 Score=45.72 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.7
Q ss_pred ceEE-EEC-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKIC-CIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+||+ |.| .|++|..++..|.++ ||+|+++|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~--g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEK--GYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 4786 665 699999999999998 99999999854
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=87.51 E-value=0.56 Score=41.93 Aligned_cols=76 Identities=11% Similarity=0.236 Sum_probs=51.5
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHHhhcCCE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKHVREANI 81 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (480)
.||+||| ++ |....+.+. |.+++++|+++. .+ . ...+..++.+..||+
T Consensus 123 ~kV~vIG--~~--P~v~~l~~~--~~~~~VlE~~p~------~g-------------------d-~p~~~~~~lLp~aD~ 170 (251)
T d2h1qa1 123 KKVGVVG--HF--PHLESLLEP--ICDLSILEWSPE------EG-------------------D-YPLPASEFILPECDY 170 (251)
T ss_dssp SEEEEES--CC--TTHHHHHTT--TSEEEEEESSCC------TT-------------------C-EEGGGHHHHGGGCSE
T ss_pred CEEEEEe--cc--hhHHHHHhc--CCcEEEEeCCCC------CC-------------------C-CCchHHHHhhhcCCE
Confidence 4799997 45 677777777 889999999852 11 1 123345667899999
Q ss_pred EEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
+|++=-| .+...+..|..+.++...|+.
T Consensus 171 viiTGsT----------------lvN~Tl~~LL~~~~~a~~vvl 198 (251)
T d2h1qa1 171 VYITCAS----------------VVDKTLPRLLELSRNARRITL 198 (251)
T ss_dssp EEEETHH----------------HHHTCHHHHHHHTTTSSEEEE
T ss_pred EEEEech----------------hhcCCHHHHHHhCCcCCEEEE
Confidence 9998432 234456777787877765543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=87.42 E-value=0.21 Score=41.97 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=33.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
.+|-.+|||.-- .|..|+++ |++|+++|++++-++..++
T Consensus 22 ~rvLd~GCG~G~--~a~~la~~--G~~V~gvD~S~~~i~~a~~ 60 (201)
T d1pjza_ 22 ARVLVPLCGKSQ--DMSWLSGQ--GYHVVGAELSEAAVERYFT 60 (201)
T ss_dssp CEEEETTTCCSH--HHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred CEEEEecCcCCH--HHHHHHHc--CCceEeecccHHHHHHHHH
Confidence 478899999864 56788988 9999999999999988775
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.41 E-value=0.84 Score=36.00 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhH-HHhhhhcccCCCCCCCCCCCCCCCCcCceEEec
Q 011650 326 KIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEH-IQRDLQMNKFDWDHPIHLQPTSPSTINQVIVAS 404 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (480)
+|.|+|... -+..+++.|.+.|.+|.+-|.--..-+ +...++..... + +.+-.+
T Consensus 2 ~IvI~G~G~----------~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~------------G---d~~~~~ 56 (132)
T d1lssa_ 2 YIIIAGIGR----------VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVIN------------G---DCTKIK 56 (132)
T ss_dssp EEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEE------------S---CTTSHH
T ss_pred EEEEECCCH----------HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhcc------------C---cccchh
Confidence 688999754 789999999999999999987422211 11111100000 0 000012
Q ss_pred Chhhh-cccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCChHHHhhcCcE
Q 011650 405 DAYEA-TKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFI 461 (480)
Q Consensus 405 ~~~~a-~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~ 461 (480)
.+.++ ++.+|+++.+|+-++- ++-...+...+..+.+|.=..+--..+.+++.|..
T Consensus 57 ~l~~~~i~~a~~vv~~t~~d~~-N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d 113 (132)
T d1lssa_ 57 TLEDAGIEDADMYIAVTGKEEV-NLMSSLLAKSYGINKTIARISEIEYKDVFERLGVD 113 (132)
T ss_dssp HHHHTTTTTCSEEEECCSCHHH-HHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCS
T ss_pred hhhhcChhhhhhhcccCCcHHH-HHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCC
Confidence 23333 5789999999988763 23333444555666566544444444566666664
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.23 E-value=0.24 Score=42.84 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
|+|||.|.-|+..|..+++. |.+|.++|..+
T Consensus 8 viVIG~GpAGl~aA~~aa~~--G~kV~lie~~~ 38 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQL--GFNTACVEKRG 38 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEEEecC
Confidence 89999999999999999998 99999999653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=87.11 E-value=1 Score=40.06 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=56.3
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEe-cCHHHHh--hc
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFS-TDVEKHV--RE 78 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~--~~ 78 (480)
++|.=+|+|.-+++++..-+- +++-.|+++|++++.++..++...... ...++++. .|..+.+ ..
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v-~~~g~V~~vD~~e~~~~~A~~n~~~~~-----------~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYAL-NGKGTLTVVERDEDNLKKAMDNLSEFY-----------DIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHH-TTSSEEEEECSCHHHHHHHHHHHHTTS-----------CCTTEEEECSCTTTCCCSCC
T ss_pred CEEEEeeeeCcHHHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHhc-----------CCCceEEEEeeeecccccce
Confidence 467788888766554322221 124589999999998887664211000 01233322 2333322 34
Q ss_pred CCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 79 ANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
.|.||+-+|.|. .+++.+...|++|-.++.
T Consensus 155 fD~V~ld~p~p~-----------------~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 155 YDAVIADIPDPW-----------------NHVQKIASMMKPGSVATF 184 (250)
T ss_dssp EEEEEECCSCGG-----------------GSHHHHHHTEEEEEEEEE
T ss_pred eeeeeecCCchH-----------------HHHHHHHHhcCCCceEEE
Confidence 799998887653 346677788888776654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.11 E-value=0.22 Score=42.26 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.6
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.+|.|||.|..|+..|..+++. |.+|+++|..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~--g~~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARA--ELKPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT--TCCCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHc--CCcEEEEEee
Confidence 4799999999999988889988 9999999853
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.07 E-value=0.21 Score=45.94 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|||.|.-|+..|..|+++.+|++|+++|.++
T Consensus 52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 85 (311)
T d2gjca1 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 85 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 4999999999999999999654589999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=86.96 E-value=2.9 Score=35.66 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=68.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHH---Hh--h
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEK---HV--R 77 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~---a~--~ 77 (480)
|-=||||.-...+ .+|+..|+.+++|+|+++..+..+.+.. ++....++++ ..|... .+ .
T Consensus 33 vLeIGcG~G~~~~--~lA~~~p~~~~iGiD~~~~~i~~a~~~~------------~~~~l~Nv~~~~~Da~~l~~~~~~~ 98 (204)
T d2fcaa1 33 HIEVGTGKGQFIS--GMAKQNPDINYIGIELFKSVIVTAVQKV------------KDSEAQNVKLLNIDADTLTDVFEPG 98 (204)
T ss_dssp EEEECCTTSHHHH--HHHHHCTTSEEEEECSCHHHHHHHHHHH------------HHSCCSSEEEECCCGGGHHHHCCTT
T ss_pred EEEEEecCcHHHH--HHHHhCCCCcEEEeecchHHHHHHHHHH------------HHHhccCchhcccchhhhhcccCch
Confidence 4558999866543 3566667899999999999887765310 0001124443 223222 12 3
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhh
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHN 144 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~ 144 (480)
..|.|++.-|.|..... +..--+ .-.+.++.+...|++|.++.+.| =.....+.+...+.+.
T Consensus 99 ~~d~v~i~fp~P~~k~~---h~k~Rl-~~~~~l~~~~r~LkpgG~l~i~T-D~~~y~~~~~~~~~~~ 160 (204)
T d2fcaa1 99 EVKRVYLNFSDPWPKKR---HEKRRL-TYSHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSLKSFSEY 160 (204)
T ss_dssp SCCEEEEESCCCCCSGG---GGGGST-TSHHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchhh---hcchhh-hHHHHHHHHHHhCCCCcEEEEEE-CChHHHHHHHHHHHHC
Confidence 57888888887753210 000000 00356777888889988876654 2234444555555544
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=86.76 E-value=1.4 Score=36.02 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=49.1
Q ss_pred ceEEEECC--ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 2 VKICCIGA--GYVGGPTMAVIALKCPSIEVAVVDIS-----VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGl--G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
.||++||= ..+-.++...+++- |.+++++-.. ++..+...+ ... -..+.+.+++|+++
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~--g~~i~~~~P~~~~~~~~~~~~~~~------------~~~-~~~~~i~~~~d~~~ 68 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKM--GMNFVACGPEELKPRSDVFKRCQE------------IVK-ETDGSVSFTSNLEE 68 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHT--TCEEEEESCGGGCCCHHHHHHHHH------------HHH-HHCCEEEEESCHHH
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEecchhhhhhhhHHHHHHH------------HHh-hcCCceEEEecHHH
Confidence 48999994 57889998888887 8999887653 222222111 000 12357889999999
Q ss_pred HhhcCCEEEEEc
Q 011650 75 HVREANIVFVSV 86 (480)
Q Consensus 75 a~~~aDvVii~V 86 (480)
+++++|+|..-.
T Consensus 69 ai~~aDviyt~~ 80 (161)
T d1vlva2 69 ALAGADVVYTDV 80 (161)
T ss_dssp HHTTCSEEEECC
T ss_pred hhhhhhheeccc
Confidence 999999998764
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.32 Score=44.59 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=28.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+||.|.| .|++|..++..|.++ |++|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~--g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 5899997 699999999999998 999999996
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=86.66 E-value=0.47 Score=40.11 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCC--ChhHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQV--PQEHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
|++++-+|+++| |.|+.-+..++..+..-|++|++-=|-- +++.+......... ..-
T Consensus 1 k~~~~l~i~~vG--------D~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~-------------~~g 59 (183)
T d1duvg2 1 KAFNEMTLVYAG--------DARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQ-------------QNG 59 (183)
T ss_dssp CCGGGCEEEEES--------CTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHH-------------HTT
T ss_pred CCcCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHH-------------hcC
Confidence 356788999998 7888778888898888899999988732 12211110000000 001
Q ss_pred CceEEecChhhhcccCcEEEEeecCcc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
..+.++++++++++++|+|.. +-|..
T Consensus 60 ~~~~~~~d~~~a~~~aDvvyt-~~w~s 85 (183)
T d1duvg2 60 GNITLTEDVAKGVEGADFIYT-DVWVS 85 (183)
T ss_dssp CEEEEESCHHHHHTTCSEEEE-CCSSC
T ss_pred CceEEEechhhccccCCEEEE-Eehhh
Confidence 346788999999999997765 56643
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.59 E-value=0.23 Score=48.26 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=34.8
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVPRINAWNSD 45 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~g 45 (480)
+||.|||+|.+|..++..|+.. |. +++++|.+.=....|++.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~--Gvg~i~lvD~D~Ve~sNL~RQ 80 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALS--GFRQIHVIDMDTIDVSNLNRQ 80 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTT--TCCCEEEECCCBCCGGGGGTC
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCeEEEEECCCcchhhhccc
Confidence 4899999999999999999998 76 799999876555556554
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.57 E-value=0.32 Score=39.05 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=28.3
Q ss_pred ceEEEECCChhHHHHHHHHHHc--CCCCeEEEEeCCH
Q 011650 2 VKICCIGAGYVGGPTMAVIALK--CPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~--~~G~~V~~~D~~~ 36 (480)
.+|.|||.|++|.-+|..|++. ..|.+|++++.++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 4799999999999999998631 1278999998754
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=86.39 E-value=0.27 Score=45.65 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
.+.|||.|.-|+.+|..|+++ |++|.+++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~--G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGA--GYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhC--CCeEEEEec
Confidence 389999999999999999998 999999975
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.36 E-value=3.5 Score=36.52 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=30.2
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISV-PRINAW 42 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~-~~v~~l 42 (480)
|+++| |.+-+|..+|..|+++ |++|++.|++. +.++.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~ 59 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEV 59 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHH
Confidence 56666 4799999999999999 99999999874 444433
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.26 E-value=0.3 Score=42.55 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||.|.-|+..|..+++. |++|.+++.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~--G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADE--GLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence 389999999999999999998 99999999754
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.24 E-value=1.2 Score=39.28 Aligned_cols=177 Identities=18% Similarity=0.164 Sum_probs=93.0
Q ss_pred ceEEEECCChhHHHHHHHHH-HcCCCCeEEEEe-----------CCHHHHHHHHcC-CCCCCCCChHHHHHHhcCCCEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVD-----------ISVPRINAWNSD-QLPIYEPGLEEVVKQCRGKNLFF 68 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D-----------~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~~l~~ 68 (480)
++|+|-|+|.||..+|..|+ +. |..|++++ +|.+.+..+.+. ...... ...+.
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~--Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~------------~~~~~ 97 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQEL--GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTY------------PKGER 97 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH--CCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTC------------SSCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhc--CCceEEeecCCCcEEeccccchHHHHHHHHhhcceecc------------cccee
Confidence 47999999999999999996 56 88888765 344444444321 111111 11222
Q ss_pred ecCHHHHhh-cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHHhhcCC
Q 011650 69 STDVEKHVR-EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRG 147 (480)
Q Consensus 69 t~d~~~a~~-~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g 147 (480)
. +.++.+. +||+++-|--.. ..+ ...++.++. ++| .+.-..|-+.+ ..++|.+.+
T Consensus 98 ~-~~~~~~~~~~DI~~PcA~~~----------~I~--------~~~a~~l~~-~~I-~e~AN~p~t~~-a~~~L~~rg-- 153 (234)
T d1b26a1 98 I-TNEELLELDVDILVPAALEG----------AIH--------AGNAERIKA-KAV-VEGANGPTTPE-ADEILSRRG-- 153 (234)
T ss_dssp E-CHHHHHTSCCSEEEECSCTT----------CBC--------HHHHTTCCC-SEE-ECCSSSCBCHH-HHHHHHHTT--
T ss_pred e-ccccccccccceeecchhcc----------ccc--------HHHHHHhhh-ceE-eecCCCCCCHH-HHHHHHHCC--
Confidence 2 3344444 999998884221 222 122334442 444 45555555544 456676654
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEEccCCcchHHHHHHHHHHHhccCCCCeEEeCCchhHHHHHHHHHHHHHHHH
Q 011650 148 INFQILSNPEFLAEGTAINDLFKPDRVLIGGRETPEGMKAIKALKDVYAHWVPEDRILCTNLWSAEVSKLAANAFLAQRI 227 (480)
Q Consensus 148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i 227 (480)
+.+.|.++... ||. ---.+|..+..-.. . ....+..+-++ ..+.
T Consensus 154 ----I~~~PD~~aNa--------------GGV----i~s~~E~~qn~~~~-----~-----w~~e~V~~~l~----~~m~ 197 (234)
T d1b26a1 154 ----ILVVPDILANA--------------GGV----TVSYFEWVQDLQSF-----F-----WDLDQVRNALE----KMMK 197 (234)
T ss_dssp ----CEEECHHHHTT--------------HHH----HHHHHHHHHHHTTC-----C-----CCHHHHHHHHH----HHHH
T ss_pred ----eEEechHHhcC--------------CCe----eeeehhcccccchh-----c-----ccHHHHHHHHH----HHHH
Confidence 45778765321 221 01123333322111 0 11222322223 3344
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhc
Q 011650 228 SSVNAMSALCEATGADVSQVSHAIG 252 (480)
Q Consensus 228 a~~nE~~~l~~~~gid~~~v~~~~~ 252 (480)
..++++...+++.++++.+....+.
T Consensus 198 ~~~~~v~~~a~~~~~~~r~aA~~~A 222 (234)
T d1b26a1 198 GAFNDVMKVKEKYNVDMRTAAYILA 222 (234)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4557788889999998877665543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.17 E-value=0.26 Score=41.64 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
+|.|||.|..|+.-|..+++. |.+|+++++..
T Consensus 7 dVvIIGGGpaGl~AA~~~ar~--g~~v~iie~~~ 38 (190)
T d1trba1 7 KLLILGSGPAGYTAAVYAARA--NLQPVLITGME 38 (190)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCCEEECCSS
T ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEEeec
Confidence 699999999999988888887 99999998653
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.32 Score=40.46 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.+++..
T Consensus 3 DViIIGgGpaGl~AAi~aar~--G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARK--GIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHc--CCeEEEEEEe
Confidence 589999999999988888888 9999999863
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.94 E-value=2.8 Score=36.73 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=28.0
Q ss_pred eEEEE-C-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCI-G-AGYVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
|+++| | .+-+|..+|..|++. |++|++.|++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPA 40 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence 56666 4 578999999999998 999999999763
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=85.72 E-value=0.32 Score=45.48 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=27.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
-|-|||.|.-|+.+|..|+++ |++|.+++.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaea--G~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEA--GVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHC--cCeEEEEec
Confidence 378999999999999999998 999999986
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.47 E-value=1.6 Score=36.00 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=34.2
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD 45 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g 45 (480)
+|.|.| +|.+|...++.+... |.+|++.+.++++.+.+++.
T Consensus 28 ~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~ 69 (183)
T d1pqwa_ 28 RVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL 69 (183)
T ss_dssp EEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT
T ss_pred EEEEECCCCCcccccchhhccc--cccceeeecccccccccccc
Confidence 577878 599999877776666 89999999999998888863
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=85.43 E-value=3.1 Score=38.09 Aligned_cols=117 Identities=14% Similarity=0.054 Sum_probs=66.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHHh-----
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKHV----- 76 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a~----- 76 (480)
+|-=+++|.-|.+++ ++.. +.+|+++|.++..++..++.. +...-.+.+ ...|..+.+
T Consensus 148 rVLDl~~gtG~~s~~--~a~g--~~~V~~vD~s~~al~~a~~n~------------~~ngl~~~~~i~~d~~~~~~~~~~ 211 (318)
T d1wxxa2 148 RALDVFSYAGGFALH--LALG--FREVVAVDSSAEALRRAEENA------------RLNGLGNVRVLEANAFDLLRRLEK 211 (318)
T ss_dssp EEEEETCTTTHHHHH--HHHH--EEEEEEEESCHHHHHHHHHHH------------HHTTCTTEEEEESCHHHHHHHHHH
T ss_pred eeeccCCCCcHHHHH--HHhc--CCcEEeecchHHHHHHHHHHH------------HHcCCCCcceeeccHHHHhhhhHh
Confidence 344567777777665 3455 679999999999998876420 000001232 344543322
Q ss_pred --hcCCEEEEEccCCCCcCCCCCCCCCchH----HHHHHHHHHHhhCCCCcEEEEecCCCcccHHHHHHHHH
Q 011650 77 --REANIVFVSVNTPTKTQGLGAGKAADLT----YWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILM 142 (480)
Q Consensus 77 --~~aDvVii~Vptp~~~~~~~~~~~~d~~----~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~ 142 (480)
...|+|++--|.-... ..++. ...+.+......+++|-+++.+|..+.-+.+.+...+.
T Consensus 212 ~~~~fD~Vi~DpP~~~~~-------~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~ 276 (318)
T d1wxxa2 212 EGERFDLVVLDPPAFAKG-------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVA 276 (318)
T ss_dssp TTCCEEEEEECCCCSCCS-------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred hhcCCCEEEEcCCccccc-------hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHH
Confidence 2579998876643221 22222 22345556677888888877766544334444544443
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.41 E-value=0.33 Score=41.86 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=28.7
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.+++.+
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEecC
Confidence 489999999999999999998 9999999865
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.32 E-value=0.37 Score=44.24 Aligned_cols=31 Identities=19% Similarity=0.041 Sum_probs=26.5
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
++-|.| .|++|..++..|.++ ||+|+++|+.
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~--g~~V~~~~r~ 34 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGK--GYEVHGLIRR 34 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred EEEEeCCccHHHHHHHHHHHHC--cCEEEEEECC
Confidence 344555 699999999999998 9999999984
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=85.23 E-value=0.28 Score=45.16 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||.|.-|+..|..++++ |++|++++..+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDA--GAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTT--TCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 389999999999999999998 99999999754
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.03 E-value=0.66 Score=42.88 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.5
Q ss_pred EEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|-|.| .|++|..++..|.++ ||+|+++|+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~--g~~V~~~d~ 33 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIEN--GYDCVVADN 33 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHC--cCeEEEEEC
Confidence 55665 799999999999998 999999985
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=84.91 E-value=0.41 Score=45.09 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=27.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
|||-|.| +|++|..++..|.++ .||+|+++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~-~~~~V~~~D~ 35 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDS 35 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH-CCCEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHh-CCCEEEEEec
Confidence 7999886 699999999999753 1899999994
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.87 E-value=0.49 Score=42.07 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=30.6
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPRINA 41 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~ 41 (480)
|+++| |.+.+|..+|..|++. |++|++.|++++..+.
T Consensus 6 K~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~ 44 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEV 44 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence 45555 4789999999999999 9999999999766443
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.74 E-value=2 Score=35.44 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCCh--hHHHhhhhcccCCCCCCCCCCCCCCCCcC
Q 011650 321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQ--EHIQRDLQMNKFDWDHPIHLQPTSPSTIN 398 (480)
Q Consensus 321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (480)
+++|.+|+++| |.|+ -+..+++.|..-|+++.+.=|..-. .+......... .....
T Consensus 1 sl~gl~I~~vG--------D~~n-V~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~-------------~~~~~ 58 (170)
T d1otha2 1 SLKGLTLSWIG--------DGNN-ILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYA-------------KENGT 58 (170)
T ss_dssp CCTTCEEEEES--------CSSH-HHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHH-------------HHHTC
T ss_pred CCCCCEEEEEc--------Cchh-HHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHH-------------hccCC
Confidence 46899999998 6654 4467777777789999988875321 11111100000 00013
Q ss_pred ceEEecChhhhcccCcEEEEeecCc
Q 011650 399 QVIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 399 ~~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
.+++.+++.++++++|++..- .|.
T Consensus 59 ~i~~~~d~~~~~~~advi~~~-~~~ 82 (170)
T d1otha2 59 KLLLTNDPLEAAHGGNVLITD-TWI 82 (170)
T ss_dssp CEEEESCHHHHHTTCSEEEEC-CSS
T ss_pred EEEEEcCHHHHHhhhhheeee-cee
Confidence 477889999999999999884 453
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=84.73 E-value=2.2 Score=36.97 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEE-EecCHHHH-h-hcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLF-FSTDVEKH-V-REA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~-~t~d~~~a-~-~~a 79 (480)
+|-=||||. |. ++..|+++ |++|+|+|.+++-++..++.. .+ ...++. ...|..+. . ...
T Consensus 44 ~iLDiGcGt-G~-~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~------------~~-~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 44 RVLDLACGT-GI-PTLELAER--GYEVVGLDLHEEMLRVARRKA------------KE-RNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp EEEEETCTT-CH-HHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------HH-TTCCCEEEESCGGGCCCCSCE
T ss_pred EEEEeCCCC-Cc-cchhhccc--ceEEEEEeecccccccccccc------------cc-ccccchheehhhhhccccccc
Confidence 577899998 44 35668888 899999999998888766420 00 001222 22333331 1 245
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
|+|+.+-.+-. ..+......+++.+..+|++|.+++.
T Consensus 107 D~I~~~~~~~~---------~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 107 DAVTMFFSTIM---------YFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp EEEEECSSGGG---------GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred chHhhhhhhhh---------cCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 76665422111 23334567889999999998876654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.67 E-value=0.75 Score=42.32 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=27.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++|-|.| .|++|..++..|.+. ||+|+++|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~--g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKL--DQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence 3566776 699999999999998 999999996
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=84.66 E-value=0.15 Score=42.95 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.2
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+|.|||.|..|.-+|..|.+. |++|.++.+
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~--g~~v~i~~~ 34 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQA--GYQGLITVV 34 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHH--TCCSCEEEE
T ss_pred CEEEECccHHHHHHHHHHHhc--CCceEEEEE
Confidence 599999999999999999998 766655543
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.52 E-value=0.32 Score=42.35 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=28.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|.-|+..|..+++. |++|.++|..
T Consensus 5 DviVIG~GpaGl~aA~~aa~~--G~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGG--CCCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 478999999999999999998 9999999854
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.46 E-value=0.44 Score=44.04 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.6
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||-|.| .|++|..++..|.++ |++|+++|+
T Consensus 4 KILITG~tGfIGs~lv~~Ll~~--g~~V~~ld~ 34 (346)
T d1ek6a_ 4 KVLVTGGAGYIGSHTVLELLEA--GYLPVVIDN 34 (346)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence 698987 699999999999998 999999985
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.42 E-value=0.51 Score=42.97 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=28.9
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
++|-|.| .|++|..++..|.++ ||+|+++|+..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~--g~~V~~~~r~~ 34 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK--GYRVHGLVARR 34 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCC
Confidence 3677886 699999999999998 99999999864
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=84.39 E-value=0.18 Score=41.26 Aligned_cols=86 Identities=12% Similarity=0.001 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEEecChhhhcccCcEEEEeecCcc
Q 011650 345 PAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIVASDAYEATKDSHGVCILTEWDE 424 (480)
Q Consensus 345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~vi~~~~~~ 424 (480)
.+..+++.|.+.+..+.+|+-.....+...+.. -..+.+..++++.+|+|+++++.+.
T Consensus 10 mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~DiVil~v~d~~ 67 (153)
T d2i76a2 10 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVY----------------------GGKAATLEKHPELNGVVFVIVPDRY 67 (153)
T ss_dssp HHHHHHHTTC----CCCEECSSHHHHHHHHHHT----------------------CCCCCSSCCCCC---CEEECSCTTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc----------------------cccccchhhhhccCcEEEEeccchh
Confidence 677888888665555578986433322222111 1123567888999999999998765
Q ss_pred cccccHHHHHhhcC-CCCEEEEcCCCCChHHHhh
Q 011650 425 FKNLDYQKIYNNMQ-KPAFVFDGRNILDVEKLRK 457 (480)
Q Consensus 425 ~~~~~~~~~~~~~~-~~~~i~D~~~~~~~~~~~~ 457 (480)
+. .+.+.++ +..+|+|+.+..+.+.++.
T Consensus 68 i~-----~v~~~l~~~~~ivi~~s~~~~~~~l~~ 96 (153)
T d2i76a2 68 IK-----TVANHLNLGDAVLVHCSGFLSSEIFKK 96 (153)
T ss_dssp HH-----HHHTTTCCSSCCEEECCSSSCGGGGCS
T ss_pred hh-----HHHhhhcccceeeeecccchhhhhhhh
Confidence 43 4555553 4568999999888766654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=0.47 Score=40.66 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
+.|||.|..|+..|..+++. |.+|.++|..
T Consensus 6 viIIG~GpaG~~aA~~aar~--G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAEL--GARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence 78999999999999999998 9999999864
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.96 E-value=0.37 Score=42.15 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=29.2
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
|+++| |.+-+|..+|..|++. |++|++.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKAR--GYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCccc
Confidence 56666 5689999999999999 9999999998653
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=83.96 E-value=1.6 Score=35.77 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCCCEEEEEeeccCCCCCcccCC-hHHHHHHHHHhCC-CeEEEECCCCCh--hHHHhhhhcccCCCCCCCCCCCCCCCCc
Q 011650 322 VSGKKIAILGFAFKKDTGDTRET-PAIDVCKGLMGDK-ARLSIYDPQVPQ--EHIQRDLQMNKFDWDHPIHLQPTSPSTI 397 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g-~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (480)
+++.+|+++| |+++| -+-.++..|..-| ..+.+.-|..-. +....... ..-
T Consensus 2 l~gl~i~~vG--------D~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~-----------------~~~ 56 (160)
T d1ekxa2 2 LDNLHVAMVG--------DLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLD-----------------EKG 56 (160)
T ss_dssp SSSCEEEEES--------CTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHH-----------------HTT
T ss_pred CCCCEEEEEc--------CCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHh-----------------hhc
Confidence 5789999998 99998 5567888888875 666676663221 11111110 011
Q ss_pred CceEEecChhhhcccCcEEEEeecCc
Q 011650 398 NQVIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 398 ~~~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
..+.+++++.+|++++|+|.. +.|.
T Consensus 57 ~~~~~~~d~~~a~~~aDvvy~-~~~~ 81 (160)
T d1ekxa2 57 IAWSLHSSIEEVMAEVDILYM-TRVQ 81 (160)
T ss_dssp CCEEECSCSTTTGGGCSEEEE-CCCC
T ss_pred cccccccCHHHHhCcCceEEe-eccc
Confidence 346678899999999998764 4454
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.88 Score=37.70 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=32.5
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNS 44 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~ 44 (480)
+|.|+|+ |.+|.......... |.+|++.+.++++.+.+++
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred EEEEEecccccccccccccccc--Ccccccccccccccccccc
Confidence 6899995 99999766655555 8999999999988877665
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=83.82 E-value=2.6 Score=34.23 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=54.8
Q ss_pred EEEEEeeccCCCCCcccCChHHH-HHHHHHhC-CCe-EEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCceE
Q 011650 326 KIAILGFAFKKDTGDTRETPAID-VCKGLMGD-KAR-LSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQVI 401 (480)
Q Consensus 326 ~v~ilGla~K~~~~d~r~Sp~~~-l~~~L~~~-g~~-V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (480)
||+|+|... -+.. .+..|... +++ +.++||..... .+...+ ++.
T Consensus 3 ri~iIG~G~----------~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~----------------------~~~ 50 (164)
T d1tlta1 3 RIGVVGLGG----------IAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------------------RIP 50 (164)
T ss_dssp EEEEECCST----------HHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------------------TCC
T ss_pred EEEEEcCCH----------HHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc----------------------ccc
Confidence 799999743 3433 35556553 777 56899976543 223333 234
Q ss_pred EecChhhhcccCcEEEEeecCcccccccHHHHHhhcCCCCEEEEcCCCCCh
Q 011650 402 VASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDV 452 (480)
Q Consensus 402 ~~~~~~~a~~~~d~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~ 452 (480)
+.++.++.+++.|+|+|+|++..-.++-...+.. +.+ ++++=--..+.
T Consensus 51 ~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~al~~--gk~-V~~EKPla~~~ 98 (164)
T d1tlta1 51 YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNA--GVH-VCVDKPLAENL 98 (164)
T ss_dssp BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHT--TCE-EEEESSSCSSH
T ss_pred ccccchhhhhhcccccccccchhccccccccccc--cce-eeccccccCCH
Confidence 5677888889999999999987533332222221 334 56664444443
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=83.49 E-value=0.49 Score=44.34 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHcCCCCe-EEEEeCC
Q 011650 2 VKICCIG-AGYVGGPTMAVIALKCPSIE-VAVVDIS 35 (480)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~La~~~~G~~-V~~~D~~ 35 (480)
|||-|.| +|.+|..++..|+++ ||+ |+++|..
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~--g~~vv~~~d~~ 34 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKN--TQDTVVNIDKL 34 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH--CSCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence 7999997 699999999999998 886 6677753
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.34 E-value=0.39 Score=41.06 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=46.0
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCCCCCCCCCCcCceEE
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIHLQPTSPSTINQVIV 402 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (480)
..+||+|+|.|= --...|++.|.++|++|++.+-.... ... .. + +..+...+ ++.-
T Consensus 2 ~~kkIlV~GatG---------~iG~~v~~~Ll~~g~~V~~~~R~~~~--~~~-~~--------~-~~~~~~~g---D~~d 57 (205)
T d1hdoa_ 2 AVKKIAIFGATG---------QTGLTTLAQAVQAGYEVTVLVRDSSR--LPS-EG--------P-RPAHVVVG---DVLQ 57 (205)
T ss_dssp CCCEEEEESTTS---------HHHHHHHHHHHHTTCEEEEEESCGGG--SCS-SS--------C-CCSEEEES---CTTS
T ss_pred CCCEEEEECCCC---------HHHHHHHHHHHHCcCEEEEEEcChhh--ccc-cc--------c-cccccccc---cccc
Confidence 457999999631 26789999999999999998532111 000 00 0 00000000 1111
Q ss_pred ecChhhhcccCcEEEEeecCc
Q 011650 403 ASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 403 ~~~~~~a~~~~d~~vi~~~~~ 423 (480)
.+++.++++++|+||.+....
T Consensus 58 ~~~l~~al~~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 58 AADVDKTVAGQDAVIVLLGTR 78 (205)
T ss_dssp HHHHHHHHTTCSEEEECCCCT
T ss_pred hhhHHHHhcCCCEEEEEeccC
Confidence 246778999999999887654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.28 E-value=0.55 Score=40.12 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=28.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
.|.|||.|..|+..|..+++. |.+|.+++..
T Consensus 5 DviVIG~GpaGl~aA~~aar~--G~kV~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCEEEEEecC
Confidence 378999999999999999998 9999999875
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=83.24 E-value=2 Score=37.98 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=27.7
Q ss_pred eEEEECC-C--hhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011650 3 KICCIGA-G--YVGGPTMAVIALKCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGl-G--~~G~~lA~~La~~~~G~~V~~~D~~~~ 37 (480)
++-|.|. | -+|..+|..|++. |++|++.+++++
T Consensus 7 ~alITGaag~~GIG~AiA~~la~~--Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 7 KGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNES 42 (274)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 4556675 5 5999999999998 999999999864
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.15 E-value=5.2 Score=34.69 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.8
Q ss_pred EEEE--CCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011650 4 ICCI--GAGYVGGPTMAVIALKCPSIEVAVVDISVPR 38 (480)
Q Consensus 4 I~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~ 38 (480)
++|| |.+-+|..+|..|+++ |++|++.|++.+.
T Consensus 3 vAlVTGas~GIG~aia~~la~~--G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSEG 37 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchH
Confidence 4555 4677999999999999 9999999998554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=82.98 E-value=0.43 Score=40.54 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChhHHHhhhhcccCCCCCCCC---CCCC-CCCCcCc
Q 011650 324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQEHIQRDLQMNKFDWDHPIH---LQPT-SPSTINQ 399 (480)
Q Consensus 324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 399 (480)
-+||+|+|... ....++..+..+|++|.+||+.-.. +.+.+......|++... ..+. .......
T Consensus 4 I~~vaViGaG~----------mG~~iA~~~a~~G~~V~l~D~~~~~--l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (186)
T d1wdka3 4 VKQAAVLGAGI----------MGGGIAYQSASKGTPILMKDINEHG--IEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNG 71 (186)
T ss_dssp CSSEEEECCHH----------HHHHHHHHHHHTTCCEEEECSSHHH--HHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCEEEEECcCH----------HHHHHHHHHHhCCCeEEEEECCHHH--HhhhhhhhhhhHHhhhcccccchhhhhhhhce
Confidence 46899999754 7888999999999999999995432 21111100000000000 0000 0001133
Q ss_pred eEEecChhhhcccCcEEEEeecCc-ccccccHHHHHhhcCCCCEEEEcCCCCChHHHh
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD-EFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLR 456 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~ 456 (480)
+....+ .+++.++|.|+-+..=+ +.|.--+.+|.+..++..+|.-....+...++.
T Consensus 72 i~~~~~-~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la 128 (186)
T d1wdka3 72 IRPTLS-YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLA 128 (186)
T ss_dssp EEEESS-STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHG
T ss_pred eecccc-cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHH
Confidence 555544 45689999999865543 222222345556666666666666666665554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=82.86 E-value=0.59 Score=42.55 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=27.0
Q ss_pred eEEEEC-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
||-|.| +|++|..++..|.++ ||+|+++|.
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~--g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ--GIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence 787886 699999999999998 999999984
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.56 E-value=1.2 Score=37.27 Aligned_cols=88 Identities=22% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCeEEEECCCCChh-HHHhhhhcccCCCCCCCCCCCCCCCCcCce
Q 011650 322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDKARLSIYDPQVPQE-HIQRDLQMNKFDWDHPIHLQPTSPSTINQV 400 (480)
Q Consensus 322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (480)
+++++|+|+|- .|....=+.-|+..|++|.+==-.-+.. +..+ .+++
T Consensus 14 ik~k~IaViGY----------GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~----------------------~~Gf 61 (182)
T d1np3a2 14 IQGKKVAIIGY----------GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE----------------------AHGL 61 (182)
T ss_dssp HHTSCEEEECC----------SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH----------------------HTTC
T ss_pred HCCCEEEEEee----------CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh----------------------hhcc
Confidence 36899999994 5788888888899999998854332221 1111 1344
Q ss_pred EEecChhhhcccCcEEEEeecCcccccccH-HHHHhhcCCCCEE
Q 011650 401 IVASDAYEATKDSHGVCILTEWDEFKNLDY-QKIYNNMQKPAFV 443 (480)
Q Consensus 401 ~~~~~~~~a~~~~d~~vi~~~~~~~~~~~~-~~~~~~~~~~~~i 443 (480)
++ .+..||++.+|+|+++++-.. ..--| +.+...|++...+
T Consensus 62 ~v-~~~~eA~~~aDiim~L~PD~~-q~~vy~~~I~p~lk~g~~L 103 (182)
T d1np3a2 62 KV-ADVKTAVAAADVVMILTPDEF-QGRLYKEEIEPNLKKGATL 103 (182)
T ss_dssp EE-ECHHHHHHTCSEEEECSCHHH-HHHHHHHHTGGGCCTTCEE
T ss_pred cc-ccHHHHhhhcCeeeeecchHH-HHHHHHHhhhhhcCCCcEE
Confidence 44 478999999999999998432 22224 3566667654333
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=82.45 E-value=0.49 Score=44.19 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=27.4
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
+-|||.|.-|+.+|..|+++ |++|.+++.
T Consensus 10 vIVVGsG~aG~v~A~rLaea--G~~VlvLEa 38 (370)
T d3coxa1 10 ALVIGSGYGGAVAALRLTQA--GIPTQIVEM 38 (370)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCCEEEECS
T ss_pred EEEECcCHHHHHHHHHHHHC--CCeEEEEeC
Confidence 67999999999999999998 999999986
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.42 E-value=0.49 Score=38.42 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=28.2
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~ 34 (480)
++|.|||.|.+|..-|..|.+. |.+|++++.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~--GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeC
Confidence 4799999999999999999998 899999954
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.40 E-value=2.9 Score=34.19 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=47.1
Q ss_pred ceEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeC-----CHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH
Q 011650 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDI-----SVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH 75 (480)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~-----~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (480)
.||++||- ..|..+++..+..- |.+|+++.. +++.++.+.+. .....+.+..+.|+.++
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~--g~~v~~~~P~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~~ea 69 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKL--GADVVVATPEGYEPDEKVIKWAEQN-------------AAESGGSFELLHDPVKA 69 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHT--TCEEEEECCTTCCCCHHHHHHHHHH-------------HHHHTCEEEEESCHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEecccccCCChHHHHHHHHh-------------hhcccceEEEecCHHHH
Confidence 48999996 34667777777776 899998754 33333333321 00123567899999999
Q ss_pred hhcCCEEEEEc
Q 011650 76 VREANIVFVSV 86 (480)
Q Consensus 76 ~~~aDvVii~V 86 (480)
+.++|+|..-.
T Consensus 70 ~~~adviy~~~ 80 (163)
T d1pvva2 70 VKDADVIYTDV 80 (163)
T ss_dssp TTTCSEEEECC
T ss_pred hhhccEEeecc
Confidence 99999888643
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=82.37 E-value=6.9 Score=33.94 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=30.5
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVVD-ISVPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~ 43 (480)
+|++| |.+-+|..+|..|++. |++|++.+ ++++..+++.
T Consensus 2 pV~lITGas~GIG~a~a~~la~~--Ga~V~i~~~~~~~~~~~~~ 43 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVS 43 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHH
Confidence 46666 5688999999999999 99998865 5666666554
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.31 E-value=6.1 Score=33.46 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=61.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEE-ecCHHHH-----hh
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFF-STDVEKH-----VR 77 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a-----~~ 77 (480)
|-=||||.-...+ .+|+..|...++|+|+++..+....+.. .+....++++ ..|..+. -.
T Consensus 35 vLdIGcG~G~~~~--~lA~~~p~~~~iGid~~~~~v~~a~~~~------------~~~~l~Ni~~~~~da~~l~~~~~~~ 100 (204)
T d1yzha1 35 HVEVGSGKGAFVS--GMAKQNPDINYIGIDIQKSVLSYALDKV------------LEVGVPNIKLLWVDGSDLTDYFEDG 100 (204)
T ss_dssp EEEESCTTSHHHH--HHHHHCTTSEEEEEESCHHHHHHHHHHH------------HHHCCSSEEEEECCSSCGGGTSCTT
T ss_pred EEEEeccCCHHHH--HHHHHCCCCceEEEeccHHHHHHHHHhh------------hhhccccceeeecCHHHHhhhccCC
Confidence 4558999866643 4555567899999999998877654310 0001123432 2222111 24
Q ss_pred cCCEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEEec
Q 011650 78 EANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (480)
Q Consensus 78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S 127 (480)
.+|.|++.-|.|..... +..--+ .-.+.++.+...|++|..+.+.|
T Consensus 101 ~~~~i~i~fPdPw~K~~---h~krRl-~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 101 EIDRLYLNFSDPWPKKR---HEKRRL-TYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSEEEEESCCCCCSGG---GGGGST-TSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ceehhcccccccccchh---hhhhhh-hHHHHHHHHHHhCCCCcEEEEEE
Confidence 57889998888753310 000000 00356778888999988876644
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.28 E-value=1.4 Score=35.67 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=44.9
Q ss_pred CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC--CeEEEECCCCCh-hHHHhhhhcccCCCCCCCCCCCCCCCCcCc
Q 011650 323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLMGDK--ARLSIYDPQVPQ-EHIQRDLQMNKFDWDHPIHLQPTSPSTINQ 399 (480)
Q Consensus 323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g--~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (480)
.++||+|+|..+ -...++-.|...| -++..||..-.. +....++. .. .......
T Consensus 5 ~~~KI~IiGaG~----------vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~--~~-----------~~~~~~~ 61 (148)
T d1ldna1 5 GGARVVVIGAGF----------VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFN--HG-----------KVFAPKP 61 (148)
T ss_dssp TSCEEEEECCSH----------HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH--HH-----------TTSSSSC
T ss_pred CCCeEEEECcCH----------HHHHHHHHHHhcCCCceEEEEeeccccccchhccHh--hC-----------ccccCCC
Confidence 578999999633 2344455555554 579999964221 11111111 00 0011223
Q ss_pred eEEecChhhhcccCcEEEEeecCc
Q 011650 400 VIVASDAYEATKDSHGVCILTEWD 423 (480)
Q Consensus 400 ~~~~~~~~~a~~~~d~~vi~~~~~ 423 (480)
..+..+.++++++||++|+...-+
T Consensus 62 ~~~~~~d~~~l~daDvvvitag~~ 85 (148)
T d1ldna1 62 VDIWHGDYDDCRDADLVVICAGAN 85 (148)
T ss_dssp CEEEECCGGGTTTCSEEEECCSCC
T ss_pred eEEEECCHHHhccceeEEEecccc
Confidence 445567789999999999976654
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=81.84 E-value=0.57 Score=39.98 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011650 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (480)
Q Consensus 4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~ 35 (480)
|.|||.|.-|+..|..+++. |.+|.++|..
T Consensus 6 viIIGgGpAGl~aA~~aar~--G~~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQL--GLKTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 88999999999999999998 9999999964
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.70 E-value=4.2 Score=34.11 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=56.4
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHHH-h--hcC
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEKH-V--REA 79 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~--~~a 79 (480)
+|-=||||.-. ++..|++. |.+|+|+|++++.++..++.. ... .........|..+. . ...
T Consensus 40 ~ILDiGcG~G~--~~~~la~~--~~~v~giD~S~~~i~~ak~~~-----------~~~-~~~~~~~~~d~~~l~~~~~~f 103 (226)
T d1ve3a1 40 KVLDLACGVGG--FSFLLEDY--GFEVVGVDISEDMIRKAREYA-----------KSR-ESNVEFIVGDARKLSFEDKTF 103 (226)
T ss_dssp EEEEETCTTSH--HHHHHHHT--TCEEEEEESCHHHHHHHHHHH-----------HHT-TCCCEEEECCTTSCCSCTTCE
T ss_pred EEEEECCCcch--hhhhHhhh--hcccccccccccchhhhhhhh-----------ccc-cccccccccccccccccCcCc
Confidence 57889999854 35677887 899999999999887665310 000 00011222333321 1 345
Q ss_pred CEEEEEccCCCCcCCCCCCCCCchHHHHHHHHHHHhhCCCCcEEEE
Q 011650 80 NIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (480)
Q Consensus 80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~ 125 (480)
|+|+.. -. .. ......+..+++.+...|++|-.+++
T Consensus 104 D~I~~~-~~-l~--------~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 104 DYVIFI-DS-IV--------HFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp EEEEEE-SC-GG--------GCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEe-cc-hh--------hCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 776544 22 11 12223456789999999998765433
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=81.62 E-value=3 Score=34.78 Aligned_cols=71 Identities=20% Similarity=0.378 Sum_probs=49.6
Q ss_pred ceEEEECCC--hhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHHH
Q 011650 2 VKICCIGAG--YVGGPTMAVIALKCPSIEVAVVDIS-----VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVEK 74 (480)
Q Consensus 2 mkI~VIGlG--~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (480)
.||+++|=| .|..+++..++.- |.+++++-.. ++..+.+++ .. ......+.+++++++
T Consensus 6 l~i~~vGD~~nnv~~Sli~~~~~~--g~~l~~~~P~~~~~~~~~~~~~~~------------~~-~~~g~~~~~~~d~~~ 70 (183)
T d1duvg2 6 MTLVYAGDARNNMGNSMLEAAALT--GLDLRLVAPQACWPEAALVTECRA------------LA-QQNGGNITLTEDVAK 70 (183)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHH--CCEEEEECCGGGCCCHHHHHHHHH------------HH-HHTTCEEEEESCHHH
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEEechHhhhhHHHHHHHHH------------HH-HhcCCceEEEechhh
Confidence 489999944 6889999988887 8999987653 222222211 00 012356789999999
Q ss_pred HhhcCCEEEEEcc
Q 011650 75 HVREANIVFVSVN 87 (480)
Q Consensus 75 a~~~aDvVii~Vp 87 (480)
++.++|+|...+=
T Consensus 71 a~~~aDvvyt~~w 83 (183)
T d1duvg2 71 GVEGADFIYTDVW 83 (183)
T ss_dssp HHTTCSEEEECCS
T ss_pred ccccCCEEEEEeh
Confidence 9999999987653
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=81.32 E-value=2.7 Score=36.99 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=26.5
Q ss_pred eEEE-EC-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 011650 3 KICC-IG-AGYVGGPTMAVIALKCPSIEVAVVDISVPRIN 40 (480)
Q Consensus 3 kI~V-IG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~ 40 (480)
|+.+ -| .+-+|..+|..|++. |.+|++.+++.++.+
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~--G~~vii~~r~~~~~~ 43 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPT 43 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--CCSEEEEEESSCCHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCcccHH
Confidence 4444 45 567999999999999 998888866544333
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.18 E-value=2.9 Score=34.54 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=31.6
Q ss_pred eEEEECC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC
Q 011650 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVPRINAWNSD 45 (480)
Q Consensus 3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~g 45 (480)
+|.|.|. |.+|...++..... |.+|++.++++++.+.+++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~ 73 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI 73 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT
T ss_pred EEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhh
Confidence 5778787 66777655544454 89999999999999888874
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=81.17 E-value=3.6 Score=36.28 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=31.1
Q ss_pred ceEEEE--CCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHH
Q 011650 2 VKICCI--GAGYVGGPTMAVIALKCPSIEVAVVDI-SVPRINAWN 43 (480)
Q Consensus 2 mkI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~ 43 (480)
|=|+|| |.+-+|..+|..|++. |++|++.++ +++..+++.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHH
Confidence 458888 5578999999999999 999988665 555555554
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.07 E-value=1.9 Score=37.96 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.4
Q ss_pred ceEEEECCChhHHHHHHHHHHcCCCCeEEEE
Q 011650 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV 32 (480)
Q Consensus 2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~ 32 (480)
++|+|-|.|.||..+|..|++.. |..|+++
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~-G~kvv~v 62 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDF-GMKVVAV 62 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-Ccceeec
Confidence 47999999999999999887532 7777754
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.69 E-value=1 Score=40.05 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=30.2
Q ss_pred eEEEE--CCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHH
Q 011650 3 KICCI--GAGYVGGPTMAVIALKCPSIEVAVV-DISVPRINAWN 43 (480)
Q Consensus 3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~ 43 (480)
|+++| |.+-+|..+|..|++. |++|++. +++++..+++.
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~ 48 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVV 48 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHH
Confidence 56666 6788999999999999 9999874 56666655544
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.29 E-value=0.59 Score=42.82 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=29.1
Q ss_pred eEEEECCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011650 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~ 36 (480)
.|.|||.|..|+..|..++++ |.+|++++..+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKA--GANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHH--TCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence 489999999999999999998 99999999753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.23 E-value=0.68 Score=43.89 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.4
Q ss_pred eEEEECCChhHHHHHHHHHH------cCCCCeEEEEeCCHH
Q 011650 3 KICCIGAGYVGGPTMAVIAL------KCPSIEVAVVDISVP 37 (480)
Q Consensus 3 kI~VIGlG~~G~~lA~~La~------~~~G~~V~~~D~~~~ 37 (480)
-|.|||.|.-|++.|..|++ + |++|.++|+...
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~--Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEK--DLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTC--CCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcC--CCEEEEEcCCCC
Confidence 38999999999999999997 5 999999998753
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=80.05 E-value=3 Score=33.74 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=47.8
Q ss_pred ceEEEECC---ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHcCCCCCCCCChHHHHHHhcCCCEEEecCHH
Q 011650 2 VKICCIGA---GYVGGPTMAVIALKCPSIEVAVVDIS-----VPRINAWNSDQLPIYEPGLEEVVKQCRGKNLFFSTDVE 73 (480)
Q Consensus 2 mkI~VIGl---G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~g~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (480)
.||++||= +.+..+++..+.+- |.+++.+... ++..+.+.+ ....+..++|++
T Consensus 5 l~i~~vGD~~~srV~~Sli~~~~~~--g~~~~~~~P~~~~~~~~~~~~~~~-----------------~~~~~~~~~d~~ 65 (157)
T d1ml4a2 5 LKIGLLGDLKYGRTVHSLAEALTFY--DVELYLISPELLRMPRHIVEELRE-----------------KGMKVVETTTLE 65 (157)
T ss_dssp EEEEEESCTTTCHHHHHHHHHGGGS--CEEEEEECCGGGCCCHHHHHHHHH-----------------TTCCEEEESCTH
T ss_pred CEEEEEcCCccChHHHHHHHHHHhc--CCcEEEEccchhhcchHHHHHHHh-----------------hcccceeecCHH
Confidence 48999997 67899999988876 8999887653 222222221 224578899999
Q ss_pred HHhhcCCEEEEEc
Q 011650 74 KHVREANIVFVSV 86 (480)
Q Consensus 74 ~a~~~aDvVii~V 86 (480)
+++.++|+|....
T Consensus 66 ~av~~aDvvy~~~ 78 (157)
T d1ml4a2 66 DVIGKLDVLYVTR 78 (157)
T ss_dssp HHHTTCSEEEECC
T ss_pred HhhccCcEEEeec
Confidence 9999999877653
|